Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_014050
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 982833
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
File 3 of 3
Found at i:835979 original size:39 final size:39
Alignment explanation
Indices: 835925--836008 Score: 168
Period size: 39 Copynumber: 2.2 Consensus size: 39
835915 AATCACCTAT
835925 TTATTCTCGAACTGTAAACTCTTGATCTGATCTTTCTGC
1 TTATTCTCGAACTGTAAACTCTTGATCTGATCTTTCTGC
835964 TTATTCTCGAACTGTAAACTCTTGATCTGATCTTTCTGC
1 TTATTCTCGAACTGTAAACTCTTGATCTGATCTTTCTGC
836003 TTATTC
1 TTATTC
836009 GAGTGAGTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (39 bp):
TTATTCTCGAACTGTAAACTCTTGATCTGATCTTTCTGC
Left flanking sequence: Indices 835425 -- 835924
CTTCTTGAACTCTTTTACGACGAGGTAACATAGAATAGAAAGATTAATGATCGTGAAGACGAAAG
AAGAAGAAATGAAGACGCTGCTTTGAAAGACTAAACTCCTTTCCCTTAGCTACTTCCTTCACCTA
TCCAACTCGTTCGTCTTCTTCCTTCCCCTCTGCCTTCGTTCACTCATTCCCCTACACCTTCAAAC
ACTCCGGAACCTATCTATCCTTCCCTTATTTATTGAGGTAAACTCGGTAAAGCTATTCCATTGCC
TTCCCTGAACCTATAGATTCTTGATCCGGAACCTATTCCGTAAACTCAATCACTACTGAACCTAT
TGATTTCTTTCTTCTTTCTCCTTAACTCCTTCTTCTTTTCCGAGATTCCCTTTCCTTATTTCCGG
AGAGTAGACTGAAATCCTCCCTTTTCGAGTCGAGCTGCTTCATAGTGTTTACTTAAGTGCTGCGG
AACCTTTTCTTCTTCTTCTTCTTCCTTCCCTGCTCAATCACCTAT
Right flanking sequence: Indices 836009 -- 836508
GAGTGAGTCAGGAAAGCCGAAACCTTAAACCTTTGACTATCCCTTACAGGAAATGAAAGGAAAGA
GAAGCGAATGAACGAACTGAACTCCGGCCGTAACCTCTTTCTCTTCTTTCTCCGGAACAGGAAGG
AAAGACAGAGAAGCGAATGAACAATTCCCTGAGCTACTTCTGGCCCCGATATTCCCTATTGGCCA
TTTCAGTCGGTAAAGCAATTCCATTGCCGGAGCTACTGAATGAAACCCTGACCAGAAGTTATTGC
ATTAAGGAAGTCAAGAAAGAGAAGCGACTTCCCCTGCACCGATATTCCCTGAACCTAGCTCCTTC
CCCTGAACCCGGATTTCCCTCCTCTCCCTGATTGAACAAGGCCAAGCTCATTCGCTCCTTCACAC
CTGTCTGTCGGTAAAGCAAGACAAGATGAGAGTGAAAACGAAAGAATTCCCTTCCCTGAGCTTCT
TCACCTTTATTTATAGAATGAAAGAAGAAATGAATTAGCAGCTTT
Found at i:842042 original size:35 final size:37
Alignment explanation
Indices: 841973--842046 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 37
841963 CCGATTGCCT
841973 TGAGAAAAGCATACGTTTTGTCCGTCCTTCCCTTTCTTC
1 TGAGAAAAGCATACGTTTTGT-CGTCCTTCCCTTT-TTC
*
842012 TGAGAAAAGCATCCG-TTT-T-GTCCTTCCCTTTTTC
1 TGAGAAAAGCATACGTTTTGTCGTCCTTCCCTTTTTC
842046 T
1 T
842047 TTCTCTCTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
34 4 0.12
35 12 0.35
37 1 0.03
38 3 0.09
39 14 0.41
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.41
Consensus pattern (37 bp):
TGAGAAAAGCATACGTTTTGTCGTCCTTCCCTTTTTC
Left flanking sequence: Indices 841473 -- 841972
AAGACTGACTTCTCCTACTCCTCCTTCTCCTTTAGGATAGGATCGTCGTTGGTCCTTCTTTCACT
AATGATCTCATTAGATCACCATTTGATAGTCCGCGAACGCACGAGGGACGAGACTTTCTATCGCT
TGCTTTTCACTCTCAAGACAATGGTCTCTCTCTTCTATAAATAGAAAGAAAGCGAAGCAAAGCGC
ATGGCGGTGAAGAAAGCTCAATAAAGACAGACGAACACGATGCAGGGCATAGCAGAAATGAGACC
GCTGAGCATTTCAGAAAACATATATATATGCTTGACCTTGATCGATGCTTTTTGGGGGGTGACTC
ACCAACCGACCCAGCAGTGATCGATGACAGAATGGTACGAACAAATCCAATGACTGGGATTTGGT
AGTTCTCCATTTTCTTTTCTCTTTACCCCTTTTCCTTATAAATAGGGGTGCACCTACAGATGCGC
AGGGACTTTGCTAAGCTGTTCGGCCACATTCTATTCCGATTGCCT
Right flanking sequence: Indices 842047 -- 842546
TTCTCTCTTCTCCGTATCCTTATTACAAGGGACTTTATCCAGATTGTAGACAGAAGGTAGTTGGT
AAGGGATAATGCAGGGTTGTGGTACAGGCAGGGCGAGGGGTTGAGTCGGGATTTGAATAAAACCT
CTATAAAACGTCGAGAATCTAAGAGTTTGACCTACCTGGGCGACAGTATAAAGAAGAGGGAATCC
GAGAATATGCGAGACTGGAAAGGAGAGGGAATCCGACCCCGGCTTCGCCCGAAGCATGCGAAGGA
ACGAGCCTTGTCTACGAAGCAAGTTCAGTCAGCGCAGAAATCGTACGCGAGTGTGTAGTTGACTA
GTAGTACCATTAGCCTAAACGCTCTGTATCCTTTGCGGCCGCCATTCGTCTTCCTTCGCTATTGG
AACTATGACTCCCGCTCCCTCCGTAAACTACGCTCGCTGCCTCCCGGGTCTCGTCTCAAGCTGTG
GTATAGACGGAGTTTCCTGCCTCCCGTCACAAATACAGACAAAGA
Found at i:842943 original size:64 final size:63
Alignment explanation
Indices: 842866--842988 Score: 219
Period size: 64 Copynumber: 1.9 Consensus size: 63
842856 GAAAGAAAAG
**
842866 GGGAAGGAGCGAAAGCGGTGAGCCCGAGGTTACGAGGCGAACTCGTTCAACAGCGAGACCAAA
1 GGGAAGGAGCGAAAGCGGTGAGCCCGAGGTTACGAGGCGAACGAGTTCAACAGCGAGACCAAA
842929 GGGAGAGGAGCGAAAGCGGTGAGCCCGAGGTTACGAGGCGAACGAGTTCAACAGCGAGAC
1 GGGA-AGGAGCGAAAGCGGTGAGCCCGAGGTTACGAGGCGAACGAGTTCAACAGCGAGAC
842989 ATAGAATATA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 4 0.07
64 53 0.93
ACGTcount: A:0.31, C:0.21, G:0.39, T:0.09
Consensus pattern (63 bp):
GGGAAGGAGCGAAAGCGGTGAGCCCGAGGTTACGAGGCGAACGAGTTCAACAGCGAGACCAAA
Left flanking sequence: Indices 842366 -- 842865
TGACTAGTAGTACCATTAGCCTAAACGCTCTGTATCCTTTGCGGCCGCCATTCGTCTTCCTTCGC
TATTGGAACTATGACTCCCGCTCCCTCCGTAAACTACGCTCGCTGCCTCCCGGGTCTCGTCTCAA
GCTGTGGTATAGACGGAGTTTCCTGCCTCCCGTCACAAATACAGACAAAGAAAGAAAGAAAGAAA
GGGTAGCTAGTGCCCTTAATCGAATGACTTGAAACACTTCTCCGTAAGAAGCACTATTGGATTGG
TTGCAACCACACCTACTCTTAGTCTAGTCTTGACCTGGGCTTTTTAGGGATTCCCTGAAACCGGA
GCATCTTGTATTTCATCAAAACTAGTTGGGCAACCCCTGAATCTCGAGACACGTGGCGTTAGTTG
AGTCTTGAAACACTTGATGAATGATGAATAAGGAAGGAGAAAGAAAGATCAGAGAAAGAATAGAA
TAAAACACCTATTTACCGAGTGAAAGAAGTAATAGGAAAGAAAAG
Right flanking sequence: Indices 842989 -- 843488
ATAGAATATAAGGAGAGGAGTTCGTTCAGGATCAGAGAAAGAAGCCGAGGTTCTTCTAGTTCCGG
CAGAGAAAGAAAAGAAATAGTTCAACCCCCAGTAAGTAAAGGAAGCAAACAAACTGACAGAGCTT
TACCTCCTTCTTTAATAAATAGGTAAGGAATTAAGGTAAGGAGAAATCATCTATCTTGCGTTCAG
TCTCATTAATCTTCTCTTGCTTTCTCTTCCTTTACTTTGAATAACAAGGTTCAGTAGCTAGCTTT
CTCTTTAGTCTTGACTTGTTTACGAGGAGGTGGAATAAATAGGTTCCGGGTTGAGGTTCAGTCGC
TTCTCTTTTCTTGACTCTCCAGTAAAGGCGGATATTCTTCTTCTTTCTCTTGAGTCTTTCAAAGC
TAAAGCTGCTAACTCCTTGATTCTAGAACGAACATCGTAAACTATTATTCATACTTCTTAGTCTT
TCCTCTACTGCTAATTAATATCCCCCTTGATAGGTTCAATCGGGT
Found at i:844183 original size:19 final size:20
Alignment explanation
Indices: 844159--844217 Score: 93
Period size: 19 Copynumber: 3.0 Consensus size: 20
844149 GACAGAGTAT
844159 TTAAGGTTATTACGGCAAG-
1 TTAAGGTTATTACGGCAAGA
844178 TTAAGGTTATTACGGCAAGTA
1 TTAAGGTTATTACGGCAAG-A
*
844199 TTAAAGTTATTACGGCAAG
1 TTAAGGTTATTACGGCAAG
844218 CAGAGTATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
19 19 0.51
21 18 0.49
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (20 bp):
TTAAGGTTATTACGGCAAGA
Left flanking sequence: Indices 843659 -- 844158
GTCTGAACGAAAAGGAGAGAAGCTGTGAGACCTACAAGTAAGTATGTTATTACCAAGTGCAAAGA
ATAGAGAGTCTAAGGTTCAGCCGCAGCATTCTCTTCCATCCTTTTGTGTCGAGTAAAAGAGTGAA
TGCAAGAATCATCCTACAGTAGGAAAGGAATCTTATCTTCAGTCTTAGTTTACGGAACCATACAT
ACAGGTCGATCGGAAAAGCTAAATGAGTCAGTTAAGTAGTTAGTGAGAGGAGAAAGAGAAGAGAA
AGAATGTTTTCTATTCTTCAATTGTTCAATCAAGTAATAATATTGGTTCAGGCTCAATAGCGAAG
GGTTAACGGTTCAGTCAGTCTTTCAAAGACAGTAAACTCTCTGGCTGGCTTTCGATAGTCTTTAC
TTGTTCAATCTTCTTAAGGTTAAGAGTCGGAATTGAATTAATCTTTCTTCAGTCTTTCTTTGTTG
TTCAATATACTAGAAGGTAATAATCAAATAGAATAGACAGAGTAT
Right flanking sequence: Indices 844218 -- 844717
CAGAGTATTAAAGTTATTACGGCAAGCAATGGAATAAAGCTTTTTTCGGATTGAATTATTAAGTA
GTAGCGAAGGTAATTCAGGTGAGGGAGTTCAACCCTTGCTGTAGAGGGGCGAAGAAGCTCGACTG
GAAAGGAGAGGGGCGAAGAAGCGAGACTGGAAAGGAAAGGAGAGGGGCGGTGTTCCGTACGTAAA
GCCTAATCTGATGACCCAATCAGTCTTCCTCACCACTCTCATGGAGGTGCTTTCGACTCCCCGGT
GCAAGCCTGAACCTCCGAAGACGGCGTCCCCAATGCCCGAGGCCGGGTTCTTGACGGCAGTAGTG
CTATCAATGCCGGGTTCTATAGTCGAGCCGATCAATAATTCTACGGAAGGTCAGGTCAGGGGTGA
ATTGGGACCTCCGAGTGGTGAACCAGTCCTATGAGTGGGTTGAGAGGGCTATCTTAGGTTAGGCC
GGAGCTCAAGAATTGGCAATCGGCAGTCAGAGACGGGCTATTGGA
Found at i:844226 original size:26 final size:26
Alignment explanation
Indices: 844195--844245 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
844185 TATTACGGCA
844195 AGTATTAAAGTTATTACGGCAAGCAG
1 AGTATTAAAGTTATTACGGCAAGCAG
844221 AGTATTAAAGTTATTACGGCAAGCA
1 AGTATTAAAGTTATTACGGCAAGCA
844246 ATGGAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (26 bp):
AGTATTAAAGTTATTACGGCAAGCAG
Left flanking sequence: Indices 843695 -- 844194
AGTAAGTATGTTATTACCAAGTGCAAAGAATAGAGAGTCTAAGGTTCAGCCGCAGCATTCTCTTC
CATCCTTTTGTGTCGAGTAAAAGAGTGAATGCAAGAATCATCCTACAGTAGGAAAGGAATCTTAT
CTTCAGTCTTAGTTTACGGAACCATACATACAGGTCGATCGGAAAAGCTAAATGAGTCAGTTAAG
TAGTTAGTGAGAGGAGAAAGAGAAGAGAAAGAATGTTTTCTATTCTTCAATTGTTCAATCAAGTA
ATAATATTGGTTCAGGCTCAATAGCGAAGGGTTAACGGTTCAGTCAGTCTTTCAAAGACAGTAAA
CTCTCTGGCTGGCTTTCGATAGTCTTTACTTGTTCAATCTTCTTAAGGTTAAGAGTCGGAATTGA
ATTAATCTTTCTTCAGTCTTTCTTTGTTGTTCAATATACTAGAAGGTAATAATCAAATAGAATAG
ACAGAGTATTTAAGGTTATTACGGCAAGTTAAGGTTATTACGGCA
Right flanking sequence: Indices 844246 -- 844745
ATGGAATAAAGCTTTTTTCGGATTGAATTATTAAGTAGTAGCGAAGGTAATTCAGGTGAGGGAGT
TCAACCCTTGCTGTAGAGGGGCGAAGAAGCTCGACTGGAAAGGAGAGGGGCGAAGAAGCGAGACT
GGAAAGGAAAGGAGAGGGGCGGTGTTCCGTACGTAAAGCCTAATCTGATGACCCAATCAGTCTTC
CTCACCACTCTCATGGAGGTGCTTTCGACTCCCCGGTGCAAGCCTGAACCTCCGAAGACGGCGTC
CCCAATGCCCGAGGCCGGGTTCTTGACGGCAGTAGTGCTATCAATGCCGGGTTCTATAGTCGAGC
CGATCAATAATTCTACGGAAGGTCAGGTCAGGGGTGAATTGGGACCTCCGAGTGGTGAACCAGTC
CTATGAGTGGGTTGAGAGGGCTATCTTAGGTTAGGCCGGAGCTCAAGAATTGGCAATCGGCAGTC
AGAGACGGGCTATTGGAAGCCGGTGTTGATCCCTATAATGGTTTG
Found at i:844255 original size:26 final size:26
Alignment explanation
Indices: 844200--844256 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
844190 CGGCAAGTAT
* *
844200 TAAAGTTATTACGGCAAGCAGAGTAT
1 TAAAGTTATTACGGCAAGCAGAGGAA
844226 TAAAGTTATTACGGCAAGCA-ATGGAA
1 TAAAGTTATTACGGCAAGCAGA-GGAA
844252 TAAAG
1 TAAAG
844257 CTTTTTTCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.25
Consensus pattern (26 bp):
TAAAGTTATTACGGCAAGCAGAGGAA
Left flanking sequence: Indices 843700 -- 844199
GTATGTTATTACCAAGTGCAAAGAATAGAGAGTCTAAGGTTCAGCCGCAGCATTCTCTTCCATCC
TTTTGTGTCGAGTAAAAGAGTGAATGCAAGAATCATCCTACAGTAGGAAAGGAATCTTATCTTCA
GTCTTAGTTTACGGAACCATACATACAGGTCGATCGGAAAAGCTAAATGAGTCAGTTAAGTAGTT
AGTGAGAGGAGAAAGAGAAGAGAAAGAATGTTTTCTATTCTTCAATTGTTCAATCAAGTAATAAT
ATTGGTTCAGGCTCAATAGCGAAGGGTTAACGGTTCAGTCAGTCTTTCAAAGACAGTAAACTCTC
TGGCTGGCTTTCGATAGTCTTTACTTGTTCAATCTTCTTAAGGTTAAGAGTCGGAATTGAATTAA
TCTTTCTTCAGTCTTTCTTTGTTGTTCAATATACTAGAAGGTAATAATCAAATAGAATAGACAGA
GTATTTAAGGTTATTACGGCAAGTTAAGGTTATTACGGCAAGTAT
Right flanking sequence: Indices 844257 -- 844756
CTTTTTTCGGATTGAATTATTAAGTAGTAGCGAAGGTAATTCAGGTGAGGGAGTTCAACCCTTGC
TGTAGAGGGGCGAAGAAGCTCGACTGGAAAGGAGAGGGGCGAAGAAGCGAGACTGGAAAGGAAAG
GAGAGGGGCGGTGTTCCGTACGTAAAGCCTAATCTGATGACCCAATCAGTCTTCCTCACCACTCT
CATGGAGGTGCTTTCGACTCCCCGGTGCAAGCCTGAACCTCCGAAGACGGCGTCCCCAATGCCCG
AGGCCGGGTTCTTGACGGCAGTAGTGCTATCAATGCCGGGTTCTATAGTCGAGCCGATCAATAAT
TCTACGGAAGGTCAGGTCAGGGGTGAATTGGGACCTCCGAGTGGTGAACCAGTCCTATGAGTGGG
TTGAGAGGGCTATCTTAGGTTAGGCCGGAGCTCAAGAATTGGCAATCGGCAGTCAGAGACGGGCT
ATTGGAAGCCGGTGTTGATCCCTATAATGGTTTGACTTTGGATCA
Found at i:844367 original size:29 final size:29
Alignment explanation
Indices: 844325--844383 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
844315 CCCTTGCTGT
**
844325 AGAGGGGCGAAGAAGCTCGACTGGAAAGG
1 AGAGGGGCGAAGAAGCGAGACTGGAAAGG
844354 AGAGGGGCGAAGAAGCGAGACTGGAAAGG
1 AGAGGGGCGAAGAAGCGAGACTGGAAAGG
844383 A
1 A
844384 AAGGAGAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.46, T:0.05
Consensus pattern (29 bp):
AGAGGGGCGAAGAAGCGAGACTGGAAAGG
Left flanking sequence: Indices 843825 -- 844324
CTTCAGTCTTAGTTTACGGAACCATACATACAGGTCGATCGGAAAAGCTAAATGAGTCAGTTAAG
TAGTTAGTGAGAGGAGAAAGAGAAGAGAAAGAATGTTTTCTATTCTTCAATTGTTCAATCAAGTA
ATAATATTGGTTCAGGCTCAATAGCGAAGGGTTAACGGTTCAGTCAGTCTTTCAAAGACAGTAAA
CTCTCTGGCTGGCTTTCGATAGTCTTTACTTGTTCAATCTTCTTAAGGTTAAGAGTCGGAATTGA
ATTAATCTTTCTTCAGTCTTTCTTTGTTGTTCAATATACTAGAAGGTAATAATCAAATAGAATAG
ACAGAGTATTTAAGGTTATTACGGCAAGTTAAGGTTATTACGGCAAGTATTAAAGTTATTACGGC
AAGCAGAGTATTAAAGTTATTACGGCAAGCAATGGAATAAAGCTTTTTTCGGATTGAATTATTAA
GTAGTAGCGAAGGTAATTCAGGTGAGGGAGTTCAACCCTTGCTGT
Right flanking sequence: Indices 844384 -- 844883
AAGGAGAGGGGCGGTGTTCCGTACGTAAAGCCTAATCTGATGACCCAATCAGTCTTCCTCACCAC
TCTCATGGAGGTGCTTTCGACTCCCCGGTGCAAGCCTGAACCTCCGAAGACGGCGTCCCCAATGC
CCGAGGCCGGGTTCTTGACGGCAGTAGTGCTATCAATGCCGGGTTCTATAGTCGAGCCGATCAAT
AATTCTACGGAAGGTCAGGTCAGGGGTGAATTGGGACCTCCGAGTGGTGAACCAGTCCTATGAGT
GGGTTGAGAGGGCTATCTTAGGTTAGGCCGGAGCTCAAGAATTGGCAATCGGCAGTCAGAGACGG
GCTATTGGAAGCCGGTGTTGATCCCTATAATGGTTTGACTTTGGATCATTCAGTGGGTACCAAGA
TTGGTGGTTCGACATTCGACAGTTCTGGTCGTAGACACAGTGTTGCTGATCTCCTCAGCTATGCG
AAAGCTTTGAATATGAGAGTGCAGTCTATGCAAGCTATGCAAGTG
Found at i:856672 original size:19 final size:19
Alignment explanation
Indices: 856646--856705 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
856636 CTTTGGTGTT
856646 CAATATACTCAAAAGGTAA
1 CAATATACTCAAAAGGTAA
* ****
856665 CCATATACTCTTCTGGTAA
1 CAATATACTCAAAAGGTAA
856684 CAATATACTCAAAAGGTAA
1 CAATATACTCAAAAGGTAA
856703 CAA
1 CAA
856706 ACAAGATACA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.25
Consensus pattern (19 bp):
CAATATACTCAAAAGGTAA
Left flanking sequence: Indices 856146 -- 856645
CTGGCTGGCTAGCTTGCTTTAGTCTTTCCTTGAAGTTGAAGTATCAATAGTTTACCTACTTCTTC
CCTCCGCCCGTAAACTATTCTTTCTATTCTATTTACCTATTGAGTATAAGAATAAATAAGGGGAA
TGCATTAATGGGTCTTTAGTCTGCCTGCCTCCTTCTTTCTTCTTGTCTTGCTTGAGGATTGAATG
AATAAGTAGTTCAGTTCGTAAACTAACACCTATTACATTTACAGAGTCAGGGAAAAGGTGAATGA
AGCTTTAGTCTCCCTTCTTTCACAAAGACTGTAAAGAAAGCATAGGGCAAGTATTTCATATACAG
GTTAATTAATGAGAAAGAGAAGAAAGGATAGATAGATAGCTAGCTTGTAACCCTCTTTCCTTTTA
TTCAAAGAGTAAGTAAGACAGTAAACTCTTTGGCTTTCGATAGTCTTTTCTTTACTTGTTCTTTA
GGTTTAAGGAATCAGATAATGAATCTTTAGTCAGTCTTTGGTGTT
Right flanking sequence: Indices 856706 -- 857205
ACAAGATACAATACATACTAGAAGGGTAACCATATACTCCTAAGGTAATAGAATATACGACGGAG
TATTAAGGTTCCAGCAATGGAGGAATAGTAGAGCTTGCTTTCAGATTGAATGAGTGAAGTTAGGT
AAGAGCTTTCTGAATGAAGTAGCTCGTGAGGGAGTGAAACCCTTGTTCAGTTACCCTTGTTGGAG
TTGTATAGAGGTGGGCAGGAAGAGCGGAGTAGTCCTTCTTTCTTTCTTGACTTTGTTCTTGTTCG
GAGAGAGAGTAAGTATCTTATCTTTCTTAGCAAGTCTGATTAATCCTTCTTTGCTTTCCTTTTAG
TCTCTACTGTAAAGATTCAGAGAATAAGCAAAAGATAGGTTACACGGCTAACTAGGAATCCGAGC
GAAGACACTTCCTGATAGTGGTTCCAGGTCAAGTGAAGTAGTTAAGGAGAATGAATCAAGGAGTC
TAGTGTTTACTTGTGAAAGGATACGATCATGAATGAGCTTAGCTC
Found at i:857428 original size:13 final size:13
Alignment explanation
Indices: 857412--857442 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
857402 AAGAAGAGAT
*
857412 AAAGGGAAGGGAG
1 AAAGGGAAGGGAC
857425 AAAGGGAAGGGAC
1 AAAGGGAAGGGAC
857438 AAAGG
1 AAAGG
857443 AAAGAGTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.03, G:0.48, T:0.00
Consensus pattern (13 bp):
AAAGGGAAGGGAC
Left flanking sequence: Indices 856912 -- 857411
TGGGCAGGAAGAGCGGAGTAGTCCTTCTTTCTTTCTTGACTTTGTTCTTGTTCGGAGAGAGAGTA
AGTATCTTATCTTTCTTAGCAAGTCTGATTAATCCTTCTTTGCTTTCCTTTTAGTCTCTACTGTA
AAGATTCAGAGAATAAGCAAAAGATAGGTTACACGGCTAACTAGGAATCCGAGCGAAGACACTTC
CTGATAGTGGTTCCAGGTCAAGTGAAGTAGTTAAGGAGAATGAATCAAGGAGTCTAGTGTTTACT
TGTGAAAGGATACGATCATGAATGAGCTTAGCTCCACTTCTTCCTCAGTGTAAGTAGAAAGAACC
AACTAGAGCTCACTGTAGAGCCTCCGGATTGAATAAGAACGGAAATACGGTATTGAGACCTGAAG
ACAGCTTTATCTCGTTCTCGAATCGATAAACGGCCATTTACGAGGTTCCACTAATAGAGAGTCGT
AGCTTGCCCCTCTTCTTCTTCTTCTCTTACAGTTCAAGAAGAGAT
Right flanking sequence: Indices 857443 -- 857942
AAAGAGTTGTTTGTTGAGTCTAATCATTCAGTCAGAGTTTACGCTTACTTACTCCTTAGTCTTGA
AAGCGGAAAGAAGTCAAGAAGCCAGCCACATTCTCTATCAATCCTTTCTTTTACCGACAAGTGAT
TCAAAAGAGACCAGAGAGAGAGTTGTTAGTTAAGTTCTACAGCTATGAAGAAACTAGGGAAAGAC
GGTGAAGGAAGTTGGTCATTAAGGAGACAGACAAAACCAAAGCTAAGGTGCGAAGCAGCCAGACC
AACCAGACCGAGAAGAAAGAATACCGAATACTAAGCTTTAAGGAAGGAATGAATCCTTTGACAGT
TAAAGCTAGCTAAAGCAAGCAGCAAAGAATACTACTAATTCAATCAAGTTACTTAGAAGGGGAAA
GAGTTAGTGAGCAGGGAAAAGAAAGAGTGAACGCGCGCATCTTGTCTTGCTTAAGCTTTTCTCCT
GAGTCTTGAAACAAACTAACCAAACCCAAACACTATTGGTTTCTT
Found at i:858253 original size:12 final size:12
Alignment explanation
Indices: 858236--858291 Score: 58
Period size: 12 Copynumber: 4.3 Consensus size: 12
858226 ATGTAAATGT
858236 AGTTGTTGTTAG
1 AGTTGTTGTTAG
858248 AGTTGTTGTTAG
1 AGTTGTTGTTAG
**
858260 AGTTAGAGAGAGTTAG
1 AGTT---G-TTGTTAG
858276 AGTTGTTGTTAG
1 AGTTGTTGTTAG
858288 AGTT
1 AGTT
858292 AGAAGTTAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
12 25 0.69
13 1 0.03
15 1 0.03
16 9 0.25
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (12 bp):
AGTTGTTGTTAG
Left flanking sequence: Indices 857736 -- 858235
AGCTTTAAGGAAGGAATGAATCCTTTGACAGTTAAAGCTAGCTAAAGCAAGCAGCAAAGAATACT
ACTAATTCAATCAAGTTACTTAGAAGGGGAAAGAGTTAGTGAGCAGGGAAAAGAAAGAGTGAACG
CGCGCATCTTGTCTTGCTTAAGCTTTTCTCCTGAGTCTTGAAACAAACTAACCAAACCCAAACAC
TATTGGTTTCTTCCGTTACTTTGACTCAACAAAAAAGACTGGAACAAGAGCTTGAAAGAGAGTCT
GACAGAGAACTCTAATTCATCAATCAAGTTTCAATCAAGAAATATCGTAACGTAAGTGGTCAAGG
GGGGAGAGATATATATATCACTATTCCTTATTATATTGTATTTCCAGTTGTAACAAGGTTTAGCT
TTACCGCTTCTTCCTTCCTGTAATGAATGTATGTAGTTGTAGTAGTAGTTGTAGTTGTTGTTGTT
AGACTAGGGGTAAGCTTGACCTTCCTCCTCCTTTAATGTAAATGT
Right flanking sequence: Indices 858292 -- 858791
AGAAGTTAGAGTTAGAGTTAGACGTTAGGGGAGTAGCTTTACCCGGCCGTAATGTCAATCTTGTT
GTTGTTCTTGTCTTCGTCAGGGGAGTAACTTGAACTTCCTTGCCGTAATGTCAATCTTGTTGTTG
TTGTTCGTCACGTTAGATTACTTAACCTTCTTTCCTTTAATGTAAATGTAGTTGTATTGCTTTAG
ACTAGGGGTAAGCTTTACCGCTTCCTGCCTGTAATGAATATATGTTGTTAGTGTTGCCTGCAGCT
TGCTTTCTTGAGACGTCAGGTAAGCCTACCACCCCCCTTCCCGTATGTAATTAATCTTGGTAGCT
TGTTTCCCATAGAAGTGACTTAGAAGCGAAGAATGGAACTTCCTTCCTCTAATGTAATTATCTTG
TTGTTCCTCTTGTTCCTGTTGTTGTGTGTGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTT
TCCGGGAATGTAATAATCTTGTTGTTCTTGTCTTGCTTCCTCTTC
Found at i:858266 original size:6 final size:6
Alignment explanation
Indices: 858255--858319 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
858245 TAGAGTTGTT
*
858255 GTTAGA GTTAGA G--AGA GTTAGA GTT-GTT GTTAGA GTTAGAA GTTAGA
1 GTTAGA GTTAGA GTTAGA GTTAGA GTTAG-A GTTAGA GTTAG-A GTTAGA
858302 GTTAGA GTTAGA CGTTAG
1 GTTAGA GTTAGA -GTTAG
858320 GGGAGTAGCT
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.08
5 1 0.02
6 34 0.67
7 12 0.24
ACGTcount: A:0.31, C:0.02, G:0.34, T:0.34
Consensus pattern (6 bp):
GTTAGA
Left flanking sequence: Indices 857755 -- 858254
ATCCTTTGACAGTTAAAGCTAGCTAAAGCAAGCAGCAAAGAATACTACTAATTCAATCAAGTTAC
TTAGAAGGGGAAAGAGTTAGTGAGCAGGGAAAAGAAAGAGTGAACGCGCGCATCTTGTCTTGCTT
AAGCTTTTCTCCTGAGTCTTGAAACAAACTAACCAAACCCAAACACTATTGGTTTCTTCCGTTAC
TTTGACTCAACAAAAAAGACTGGAACAAGAGCTTGAAAGAGAGTCTGACAGAGAACTCTAATTCA
TCAATCAAGTTTCAATCAAGAAATATCGTAACGTAAGTGGTCAAGGGGGGAGAGATATATATATC
ACTATTCCTTATTATATTGTATTTCCAGTTGTAACAAGGTTTAGCTTTACCGCTTCTTCCTTCCT
GTAATGAATGTATGTAGTTGTAGTAGTAGTTGTAGTTGTTGTTGTTAGACTAGGGGTAAGCTTGA
CCTTCCTCCTCCTTTAATGTAAATGTAGTTGTTGTTAGAGTTGTT
Right flanking sequence: Indices 858320 -- 858819
GGGAGTAGCTTTACCCGGCCGTAATGTCAATCTTGTTGTTGTTCTTGTCTTCGTCAGGGGAGTAA
CTTGAACTTCCTTGCCGTAATGTCAATCTTGTTGTTGTTGTTCGTCACGTTAGATTACTTAACCT
TCTTTCCTTTAATGTAAATGTAGTTGTATTGCTTTAGACTAGGGGTAAGCTTTACCGCTTCCTGC
CTGTAATGAATATATGTTGTTAGTGTTGCCTGCAGCTTGCTTTCTTGAGACGTCAGGTAAGCCTA
CCACCCCCCTTCCCGTATGTAATTAATCTTGGTAGCTTGTTTCCCATAGAAGTGACTTAGAAGCG
AAGAATGGAACTTCCTTCCTCTAATGTAATTATCTTGTTGTTCCTCTTGTTCCTGTTGTTGTGTG
TGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGGGAATGTAATAATCTTGTTGTTCT
TGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGACTTGACCAC
Found at i:858283 original size:28 final size:30
Alignment explanation
Indices: 858243--858310 Score: 113
Period size: 28 Copynumber: 2.3 Consensus size: 30
858233 TGTAGTTGTT
858243 GTTAGAGTTGTTGTTAGAGTTAG-AG-AGA
1 GTTAGAGTTGTTGTTAGAGTTAGAAGTAGA
858271 GTTAGAGTTGTTGTTAGAGTTAGAAGTTAGA
1 GTTAGAGTTGTTGTTAGAGTTAGAAG-TAGA
858302 GTTAGAGTT
1 GTTAGAGTT
858311 AGACGTTAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
28 23 0.62
29 2 0.05
31 12 0.32
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (30 bp):
GTTAGAGTTGTTGTTAGAGTTAGAAGTAGA
Left flanking sequence: Indices 857743 -- 858242
AGGAAGGAATGAATCCTTTGACAGTTAAAGCTAGCTAAAGCAAGCAGCAAAGAATACTACTAATT
CAATCAAGTTACTTAGAAGGGGAAAGAGTTAGTGAGCAGGGAAAAGAAAGAGTGAACGCGCGCAT
CTTGTCTTGCTTAAGCTTTTCTCCTGAGTCTTGAAACAAACTAACCAAACCCAAACACTATTGGT
TTCTTCCGTTACTTTGACTCAACAAAAAAGACTGGAACAAGAGCTTGAAAGAGAGTCTGACAGAG
AACTCTAATTCATCAATCAAGTTTCAATCAAGAAATATCGTAACGTAAGTGGTCAAGGGGGGAGA
GATATATATATCACTATTCCTTATTATATTGTATTTCCAGTTGTAACAAGGTTTAGCTTTACCGC
TTCTTCCTTCCTGTAATGAATGTATGTAGTTGTAGTAGTAGTTGTAGTTGTTGTTGTTAGACTAG
GGGTAAGCTTGACCTTCCTCCTCCTTTAATGTAAATGTAGTTGTT
Right flanking sequence: Indices 858311 -- 858810
AGACGTTAGGGGAGTAGCTTTACCCGGCCGTAATGTCAATCTTGTTGTTGTTCTTGTCTTCGTCA
GGGGAGTAACTTGAACTTCCTTGCCGTAATGTCAATCTTGTTGTTGTTGTTCGTCACGTTAGATT
ACTTAACCTTCTTTCCTTTAATGTAAATGTAGTTGTATTGCTTTAGACTAGGGGTAAGCTTTACC
GCTTCCTGCCTGTAATGAATATATGTTGTTAGTGTTGCCTGCAGCTTGCTTTCTTGAGACGTCAG
GTAAGCCTACCACCCCCCTTCCCGTATGTAATTAATCTTGGTAGCTTGTTTCCCATAGAAGTGAC
TTAGAAGCGAAGAATGGAACTTCCTTCCTCTAATGTAATTATCTTGTTGTTCCTCTTGTTCCTGT
TGTTGTGTGTGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGGGAATGTAATAATCT
TGTTGTTCTTGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGA
Found at i:858305 original size:19 final size:18
Alignment explanation
Indices: 858255--858319 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 18
858245 TAGAGTTGTT
858255 GTTAGAGTTAGAG--AGA
1 GTTAGAGTTAGAGTTAGA
*
858271 GTTAGAGTT-GTTGTTAGA
1 GTTAGAGTTAG-AGTTAGA
858289 GTTAGAAGTTAGAGTTAGA
1 GTTAG-AGTTAGAGTTAGA
858308 GTTAGACGTTAG
1 GTTAGA-GTTAG
858320 GGGAGTAGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
15 1 0.02
16 10 0.24
18 9 0.22
19 20 0.49
20 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.34, T:0.34
Consensus pattern (18 bp):
GTTAGAGTTAGAGTTAGA
Left flanking sequence: Indices 857755 -- 858254
ATCCTTTGACAGTTAAAGCTAGCTAAAGCAAGCAGCAAAGAATACTACTAATTCAATCAAGTTAC
TTAGAAGGGGAAAGAGTTAGTGAGCAGGGAAAAGAAAGAGTGAACGCGCGCATCTTGTCTTGCTT
AAGCTTTTCTCCTGAGTCTTGAAACAAACTAACCAAACCCAAACACTATTGGTTTCTTCCGTTAC
TTTGACTCAACAAAAAAGACTGGAACAAGAGCTTGAAAGAGAGTCTGACAGAGAACTCTAATTCA
TCAATCAAGTTTCAATCAAGAAATATCGTAACGTAAGTGGTCAAGGGGGGAGAGATATATATATC
ACTATTCCTTATTATATTGTATTTCCAGTTGTAACAAGGTTTAGCTTTACCGCTTCTTCCTTCCT
GTAATGAATGTATGTAGTTGTAGTAGTAGTTGTAGTTGTTGTTGTTAGACTAGGGGTAAGCTTGA
CCTTCCTCCTCCTTTAATGTAAATGTAGTTGTTGTTAGAGTTGTT
Right flanking sequence: Indices 858320 -- 858819
GGGAGTAGCTTTACCCGGCCGTAATGTCAATCTTGTTGTTGTTCTTGTCTTCGTCAGGGGAGTAA
CTTGAACTTCCTTGCCGTAATGTCAATCTTGTTGTTGTTGTTCGTCACGTTAGATTACTTAACCT
TCTTTCCTTTAATGTAAATGTAGTTGTATTGCTTTAGACTAGGGGTAAGCTTTACCGCTTCCTGC
CTGTAATGAATATATGTTGTTAGTGTTGCCTGCAGCTTGCTTTCTTGAGACGTCAGGTAAGCCTA
CCACCCCCCTTCCCGTATGTAATTAATCTTGGTAGCTTGTTTCCCATAGAAGTGACTTAGAAGCG
AAGAATGGAACTTCCTTCCTCTAATGTAATTATCTTGTTGTTCCTCTTGTTCCTGTTGTTGTGTG
TGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGGGAATGTAATAATCTTGTTGTTCT
TGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGACTTGACCAC
Found at i:858311 original size:25 final size:24
Alignment explanation
Indices: 858255--858319 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
858245 TAGAGTTGTT
858255 GTTAGAGTTAGAG--AGAGTTAGA
1 GTTAGAGTTAGAGTTAGAGTTAGA
*
858277 GTT-GTTGTTAGAGTTAGAAGTTAGA
1 GTTAG-AGTTAGAGTTAG-AGTTAGA
858302 GTTAGAGTTAGACGTTAG
1 GTTAGAGTTAGA-GTTAG
858320 GGGAGTAGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
21 1 0.03
22 10 0.29
24 2 0.06
25 16 0.46
26 6 0.17
ACGTcount: A:0.31, C:0.02, G:0.34, T:0.34
Consensus pattern (24 bp):
GTTAGAGTTAGAGTTAGAGTTAGA
Left flanking sequence: Indices 857755 -- 858254
ATCCTTTGACAGTTAAAGCTAGCTAAAGCAAGCAGCAAAGAATACTACTAATTCAATCAAGTTAC
TTAGAAGGGGAAAGAGTTAGTGAGCAGGGAAAAGAAAGAGTGAACGCGCGCATCTTGTCTTGCTT
AAGCTTTTCTCCTGAGTCTTGAAACAAACTAACCAAACCCAAACACTATTGGTTTCTTCCGTTAC
TTTGACTCAACAAAAAAGACTGGAACAAGAGCTTGAAAGAGAGTCTGACAGAGAACTCTAATTCA
TCAATCAAGTTTCAATCAAGAAATATCGTAACGTAAGTGGTCAAGGGGGGAGAGATATATATATC
ACTATTCCTTATTATATTGTATTTCCAGTTGTAACAAGGTTTAGCTTTACCGCTTCTTCCTTCCT
GTAATGAATGTATGTAGTTGTAGTAGTAGTTGTAGTTGTTGTTGTTAGACTAGGGGTAAGCTTGA
CCTTCCTCCTCCTTTAATGTAAATGTAGTTGTTGTTAGAGTTGTT
Right flanking sequence: Indices 858320 -- 858819
GGGAGTAGCTTTACCCGGCCGTAATGTCAATCTTGTTGTTGTTCTTGTCTTCGTCAGGGGAGTAA
CTTGAACTTCCTTGCCGTAATGTCAATCTTGTTGTTGTTGTTCGTCACGTTAGATTACTTAACCT
TCTTTCCTTTAATGTAAATGTAGTTGTATTGCTTTAGACTAGGGGTAAGCTTTACCGCTTCCTGC
CTGTAATGAATATATGTTGTTAGTGTTGCCTGCAGCTTGCTTTCTTGAGACGTCAGGTAAGCCTA
CCACCCCCCTTCCCGTATGTAATTAATCTTGGTAGCTTGTTTCCCATAGAAGTGACTTAGAAGCG
AAGAATGGAACTTCCTTCCTCTAATGTAATTATCTTGTTGTTCCTCTTGTTCCTGTTGTTGTGTG
TGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGGGAATGTAATAATCTTGTTGTTCT
TGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGACTTGACCAC
Found at i:858878 original size:51 final size:51
Alignment explanation
Indices: 858809--859023 Score: 251
Period size: 51 Copynumber: 4.2 Consensus size: 51
858799 TAGAGGAGAC
* *
858809 GACTTGACCACCTTTCTGTAATGTAACCCTGTTGTTCTCTTT-AAAGGAGAG
1 GACTTGACCACCTTTCTGTAATGTAACCCTCTTGTTC-CTTTGAAAGGGGAG
*
858860 GACTTGACCACCTTTCTGTAATGTAACCGTCTTGTTCCTTTGAGAAGAGGGGAG
1 GACTTGACCACCTTTCTGTAATGTAACCCTCTTGTTCCTTT--GAA-AGGGGAG
* * *
858914 GACTTTA-C-CC-TTCTGTAATGTAACCGTCTTGTTCCTTTGAGAGGGGAG
1 GACTTGACCACCTTTCTGTAATGTAACCCTCTTGTTCCTTTGAAAGGGGAG
* * *
858962 GACTTTACCACCTTTCTGTAATGTAACACCCTGTTGTTCTCCTT-AAAGGGGAG
1 GACTTGACCACCTTTCTGTAATGT-A-ACCCTCTTGTTC-CTTTGAAAGGGGAG
859015 GACTTGACC
1 GACTTGACC
859024 CTTCTGTAAT
Statistics
Matches: 144, Mismatches: 10, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
48 14 0.10
49 3 0.02
50 6 0.04
51 74 0.51
52 3 0.02
53 29 0.20
54 15 0.10
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (51 bp):
GACTTGACCACCTTTCTGTAATGTAACCCTCTTGTTCCTTTGAAAGGGGAG
Left flanking sequence: Indices 858309 -- 858808
TTAGACGTTAGGGGAGTAGCTTTACCCGGCCGTAATGTCAATCTTGTTGTTGTTCTTGTCTTCGT
CAGGGGAGTAACTTGAACTTCCTTGCCGTAATGTCAATCTTGTTGTTGTTGTTCGTCACGTTAGA
TTACTTAACCTTCTTTCCTTTAATGTAAATGTAGTTGTATTGCTTTAGACTAGGGGTAAGCTTTA
CCGCTTCCTGCCTGTAATGAATATATGTTGTTAGTGTTGCCTGCAGCTTGCTTTCTTGAGACGTC
AGGTAAGCCTACCACCCCCCTTCCCGTATGTAATTAATCTTGGTAGCTTGTTTCCCATAGAAGTG
ACTTAGAAGCGAAGAATGGAACTTCCTTCCTCTAATGTAATTATCTTGTTGTTCCTCTTGTTCCT
GTTGTTGTGTGTGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGGGAATGTAATAAT
CTTGTTGTTCTTGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGAC
Right flanking sequence: Indices 859024 -- 859523
CTTCTGTAATAGAAATGTTGTTCTCCTCTCAGGTTACTTAGAGGATTGCAAGGAAGTACATCCAG
TACGAACTAACATACATACAGCAAGGACAGTAGTAACATACAGACAGAGAAGAAGTCAATCCAGT
ACGAACTAACATACATACAGCAAGTACAGTAGTAACATACAGACAGACAGAGAAGAAGGAAATCC
AGTACGAACTAACATACAGAGAAGAAGTCAATCCAGTACCAACTAACATACAGACAGGAAGTACA
GTAACATACAGACAGAGAAGAAGGACAGTAGGAACATACAGAGAGGAAGGAAGTACAGTAACATA
CATACAGAGGTTCACGGCAGGGAATGAATCAATAGAGTTTATTAATCAGTACACAGACAGAAAGG
TAATGCGGAATGGCAGTACGGAAAGGGAAGAAGTCGAAGTAGTGCAGTAGTTAGTTCTTCCATTA
CAGTAGAGCCAGCCAGGAGGAAGTGAAAGTAGAGGCAGGAAGTAG
Found at i:859177 original size:64 final size:65
Alignment explanation
Indices: 859083--859236 Score: 247
Period size: 64 Copynumber: 2.3 Consensus size: 65
859073 AAGGAAGTAC
**
859083 ATCCAGTACGAACTAACATACATACAGCAAGGACAGTAGTAACAT-ACAGACAGAGAAGAAGTCA
1 ATCCAGTACGAACTAACATACATACAGCAAGGACAGTAGTAACATAACAGACAGAGAAGAAGGAA
*
859147 ATCCAGTACGAACTAACATACATACAGCAAGTACAGTAGTAACATACAGACAGACAGAGAAGAAG
1 ATCCAGTACGAACTAACATACATACAGCAAGGACAGTAGTAACAT--A-ACAGACAGAGAAGAAG
859212 GAA
63 GAA
859215 ATCCAGTACGAACTAACATACA
1 ATCCAGTACGAACTAACATACA
859237 GAGAAGAAGT
Statistics
Matches: 83, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
64 44 0.53
68 39 0.47
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.14
Consensus pattern (65 bp):
ATCCAGTACGAACTAACATACATACAGCAAGGACAGTAGTAACATAACAGACAGAGAAGAAGGAA
Left flanking sequence: Indices 858583 -- 859082
CCCCCCTTCCCGTATGTAATTAATCTTGGTAGCTTGTTTCCCATAGAAGTGACTTAGAAGCGAAG
AATGGAACTTCCTTCCTCTAATGTAATTATCTTGTTGTTCCTCTTGTTCCTGTTGTTGTGTGTGC
TCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGGGAATGTAATAATCTTGTTGTTCTTGT
CTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGACTTGACCACCTTTCTGTAATGTAACCCTGTTG
TTCTCTTTAAAGGAGAGGACTTGACCACCTTTCTGTAATGTAACCGTCTTGTTCCTTTGAGAAGA
GGGGAGGACTTTACCCTTCTGTAATGTAACCGTCTTGTTCCTTTGAGAGGGGAGGACTTTACCAC
CTTTCTGTAATGTAACACCCTGTTGTTCTCCTTAAAGGGGAGGACTTGACCCTTCTGTAATAGAA
ATGTTGTTCTCCTCTCAGGTTACTTAGAGGATTGCAAGGAAGTAC
Right flanking sequence: Indices 859237 -- 859736
GAGAAGAAGTCAATCCAGTACCAACTAACATACAGACAGGAAGTACAGTAACATACAGACAGAGA
AGAAGGACAGTAGGAACATACAGAGAGGAAGGAAGTACAGTAACATACATACAGAGGTTCACGGC
AGGGAATGAATCAATAGAGTTTATTAATCAGTACACAGACAGAAAGGTAATGCGGAATGGCAGTA
CGGAAAGGGAAGAAGTCGAAGTAGTGCAGTAGTTAGTTCTTCCATTACAGTAGAGCCAGCCAGGA
GGAAGTGAAAGTAGAGGCAGGAAGTAGTAAGTTCTTACAGGGCAGTAGGAAGTGGAAGAGTTCGA
AGTTCAGTTCTGTAGCTAGCTTTATGGCTTGACTTGGTCCTTCCAACCAAGTAAGCAAAAGAAAG
GAGAAGTGCCCTCAGTAGCTTAGCATCATAAACAGTACTAGGTTAGGATCATAAACAGGACTAGG
TCAAGATCATATACTAGTTTAACAGCATAACACAGTAAAGAGGTC
Found at i:859238 original size:34 final size:34
Alignment explanation
Indices: 859200--859272 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
859190 ATACAGACAG
*
859200 ACAGAGAAGAAGGAAATCCAGTACGAACTAACAT
1 ACAGAGAAGAAGGAAATCCAGTACCAACTAACAT
**
859234 ACAGAGAAGAAGTCAATCCAGTACCAACTAACAT
1 ACAGAGAAGAAGGAAATCCAGTACCAACTAACAT
859268 ACAGA
1 ACAGA
859273 CAGGAAGTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.49, C:0.21, G:0.18, T:0.12
Consensus pattern (34 bp):
ACAGAGAAGAAGGAAATCCAGTACCAACTAACAT
Left flanking sequence: Indices 858700 -- 859199
TTGTTGTGTGTGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGGGAATGTAATAATC
TTGTTGTTCTTGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGACTTGACCACCTTTCTGTAA
TGTAACCCTGTTGTTCTCTTTAAAGGAGAGGACTTGACCACCTTTCTGTAATGTAACCGTCTTGT
TCCTTTGAGAAGAGGGGAGGACTTTACCCTTCTGTAATGTAACCGTCTTGTTCCTTTGAGAGGGG
AGGACTTTACCACCTTTCTGTAATGTAACACCCTGTTGTTCTCCTTAAAGGGGAGGACTTGACCC
TTCTGTAATAGAAATGTTGTTCTCCTCTCAGGTTACTTAGAGGATTGCAAGGAAGTACATCCAGT
ACGAACTAACATACATACAGCAAGGACAGTAGTAACATACAGACAGAGAAGAAGTCAATCCAGTA
CGAACTAACATACATACAGCAAGTACAGTAGTAACATACAGACAG
Right flanking sequence: Indices 859273 -- 859772
CAGGAAGTACAGTAACATACAGACAGAGAAGAAGGACAGTAGGAACATACAGAGAGGAAGGAAGT
ACAGTAACATACATACAGAGGTTCACGGCAGGGAATGAATCAATAGAGTTTATTAATCAGTACAC
AGACAGAAAGGTAATGCGGAATGGCAGTACGGAAAGGGAAGAAGTCGAAGTAGTGCAGTAGTTAG
TTCTTCCATTACAGTAGAGCCAGCCAGGAGGAAGTGAAAGTAGAGGCAGGAAGTAGTAAGTTCTT
ACAGGGCAGTAGGAAGTGGAAGAGTTCGAAGTTCAGTTCTGTAGCTAGCTTTATGGCTTGACTTG
GTCCTTCCAACCAAGTAAGCAAAAGAAAGGAGAAGTGCCCTCAGTAGCTTAGCATCATAAACAGT
ACTAGGTTAGGATCATAAACAGGACTAGGTCAAGATCATATACTAGTTTAACAGCATAACACAGT
AAAGAGGTCAGGATCATTAGGTCAGGAGCAGAACACAGTAAGAGT
Found at i:859280 original size:34 final size:34
Alignment explanation
Indices: 859122--859280 Score: 117
Period size: 34 Copynumber: 4.6 Consensus size: 34
859112 AGGACAGTAG
*
859122 TAACATACAGACAGAGAAGAAGTCAATCCAGTACGAAC
1 TAACATACAGAC--AG--GAAGTCAATCCAGTACCAAC
* * * *
859160 TAACATACATACAGCAAGTACAGT--AGTAACATAC
1 TAACATACAGACAGGAAGT-CAATCCAGTACCA-AC
* * * ** *
859194 -AGACAGACAGAGAAGAAGGAAATCCAGTACGAAC
1 TA-ACATACAGACAGGAAGTCAATCCAGTACCAAC
* *
859228 TAACATACAGAGAAGAAGTCAATCCAGTACCAAC
1 TAACATACAGACAGGAAGTCAATCCAGTACCAAC
859262 TAACATACAGACAGGAAGT
1 TAACATACAGACAGGAAGT
859281 ACAGTAACAT
Statistics
Matches: 94, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
33 8 0.09
34 64 0.68
35 9 0.10
36 2 0.02
38 11 0.12
ACGTcount: A:0.48, C:0.20, G:0.18, T:0.14
Consensus pattern (34 bp):
TAACATACAGACAGGAAGTCAATCCAGTACCAAC
Left flanking sequence: Indices 858622 -- 859121
CCCATAGAAGTGACTTAGAAGCGAAGAATGGAACTTCCTTCCTCTAATGTAATTATCTTGTTGTT
CCTCTTGTTCCTGTTGTTGTGTGTGCTCTAGAAGTTCATAAGCTTGATCTTGACCTTCTTTCCGG
GAATGTAATAATCTTGTTGTTCTTGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGACTTGAC
CACCTTTCTGTAATGTAACCCTGTTGTTCTCTTTAAAGGAGAGGACTTGACCACCTTTCTGTAAT
GTAACCGTCTTGTTCCTTTGAGAAGAGGGGAGGACTTTACCCTTCTGTAATGTAACCGTCTTGTT
CCTTTGAGAGGGGAGGACTTTACCACCTTTCTGTAATGTAACACCCTGTTGTTCTCCTTAAAGGG
GAGGACTTGACCCTTCTGTAATAGAAATGTTGTTCTCCTCTCAGGTTACTTAGAGGATTGCAAGG
AAGTACATCCAGTACGAACTAACATACATACAGCAAGGACAGTAG
Right flanking sequence: Indices 859281 -- 859780
ACAGTAACATACAGACAGAGAAGAAGGACAGTAGGAACATACAGAGAGGAAGGAAGTACAGTAAC
ATACATACAGAGGTTCACGGCAGGGAATGAATCAATAGAGTTTATTAATCAGTACACAGACAGAA
AGGTAATGCGGAATGGCAGTACGGAAAGGGAAGAAGTCGAAGTAGTGCAGTAGTTAGTTCTTCCA
TTACAGTAGAGCCAGCCAGGAGGAAGTGAAAGTAGAGGCAGGAAGTAGTAAGTTCTTACAGGGCA
GTAGGAAGTGGAAGAGTTCGAAGTTCAGTTCTGTAGCTAGCTTTATGGCTTGACTTGGTCCTTCC
AACCAAGTAAGCAAAAGAAAGGAGAAGTGCCCTCAGTAGCTTAGCATCATAAACAGTACTAGGTT
AGGATCATAAACAGGACTAGGTCAAGATCATATACTAGTTTAACAGCATAACACAGTAAAGAGGT
CAGGATCATTAGGTCAGGAGCAGAACACAGTAAGAGTGAAGGATC
Found at i:859299 original size:27 final size:26
Alignment explanation
Indices: 859268--859356 Score: 88
Period size: 27 Copynumber: 3.2 Consensus size: 26
859258 CAACTAACAT
859268 ACAGACAGGAAGTACAGTAACATACAG
1 ACAGA-AGGAAGTACAGTAACATACAG
* *
859295 ACAGAGAAGAAGGACAGTAGGAACATACAG
1 ACAGA-AGGAAGTACAGT---AACATACAG
* *
859325 AGAGGAAGGAAGTACAGTAACATACAT
1 ACA-GAAGGAAGTACAGTAACATACAG
859352 ACAGA
1 ACAGA
859357 GGTTCACGGC
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
26 2 0.04
27 25 0.50
30 21 0.42
31 2 0.04
ACGTcount: A:0.49, C:0.15, G:0.26, T:0.10
Consensus pattern (26 bp):
ACAGAAGGAAGTACAGTAACATACAG
Left flanking sequence: Indices 858768 -- 859267
TTGTTCTTGTCTTGCTTCCTCTTCCCTTCCTTAGAGGAGACGACTTGACCACCTTTCTGTAATGT
AACCCTGTTGTTCTCTTTAAAGGAGAGGACTTGACCACCTTTCTGTAATGTAACCGTCTTGTTCC
TTTGAGAAGAGGGGAGGACTTTACCCTTCTGTAATGTAACCGTCTTGTTCCTTTGAGAGGGGAGG
ACTTTACCACCTTTCTGTAATGTAACACCCTGTTGTTCTCCTTAAAGGGGAGGACTTGACCCTTC
TGTAATAGAAATGTTGTTCTCCTCTCAGGTTACTTAGAGGATTGCAAGGAAGTACATCCAGTACG
AACTAACATACATACAGCAAGGACAGTAGTAACATACAGACAGAGAAGAAGTCAATCCAGTACGA
ACTAACATACATACAGCAAGTACAGTAGTAACATACAGACAGACAGAGAAGAAGGAAATCCAGTA
CGAACTAACATACAGAGAAGAAGTCAATCCAGTACCAACTAACAT
Right flanking sequence: Indices 859357 -- 859856
GGTTCACGGCAGGGAATGAATCAATAGAGTTTATTAATCAGTACACAGACAGAAAGGTAATGCGG
AATGGCAGTACGGAAAGGGAAGAAGTCGAAGTAGTGCAGTAGTTAGTTCTTCCATTACAGTAGAG
CCAGCCAGGAGGAAGTGAAAGTAGAGGCAGGAAGTAGTAAGTTCTTACAGGGCAGTAGGAAGTGG
AAGAGTTCGAAGTTCAGTTCTGTAGCTAGCTTTATGGCTTGACTTGGTCCTTCCAACCAAGTAAG
CAAAAGAAAGGAGAAGTGCCCTCAGTAGCTTAGCATCATAAACAGTACTAGGTTAGGATCATAAA
CAGGACTAGGTCAAGATCATATACTAGTTTAACAGCATAACACAGTAAAGAGGTCAGGATCATTA
GGTCAGGAGCAGAACACAGTAAGAGTGAAGGATCATAGACTAACTAGTTTAACAGCGAGTAGGAG
TGAAACTGCTCGACCAAAGGGAGAGGAGTGAAACTGTGAGACAAA
Found at i:859322 original size:30 final size:30
Alignment explanation
Indices: 859286--859343 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
859276 GAAGTACAGT
859286 AACATACAGACAGAGAA-GAAGGACAGTAGG
1 AACATACAGACAG-GAAGGAAGGACAGTAGG
* *
859316 AACATACAGAGAGGAAGGAAGTACAGTA
1 AACATACAGACAGGAAGGAAGGACAGTA
859344 ACATACATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.50, C:0.12, G:0.29, T:0.09
Consensus pattern (30 bp):
AACATACAGACAGGAAGGAAGGACAGTAGG
Left flanking sequence: Indices 858786 -- 859285
CTCTTCCCTTCCTTAGAGGAGACGACTTGACCACCTTTCTGTAATGTAACCCTGTTGTTCTCTTT
AAAGGAGAGGACTTGACCACCTTTCTGTAATGTAACCGTCTTGTTCCTTTGAGAAGAGGGGAGGA
CTTTACCCTTCTGTAATGTAACCGTCTTGTTCCTTTGAGAGGGGAGGACTTTACCACCTTTCTGT
AATGTAACACCCTGTTGTTCTCCTTAAAGGGGAGGACTTGACCCTTCTGTAATAGAAATGTTGTT
CTCCTCTCAGGTTACTTAGAGGATTGCAAGGAAGTACATCCAGTACGAACTAACATACATACAGC
AAGGACAGTAGTAACATACAGACAGAGAAGAAGTCAATCCAGTACGAACTAACATACATACAGCA
AGTACAGTAGTAACATACAGACAGACAGAGAAGAAGGAAATCCAGTACGAACTAACATACAGAGA
AGAAGTCAATCCAGTACCAACTAACATACAGACAGGAAGTACAGT
Right flanking sequence: Indices 859344 -- 859843
ACATACATACAGAGGTTCACGGCAGGGAATGAATCAATAGAGTTTATTAATCAGTACACAGACAG
AAAGGTAATGCGGAATGGCAGTACGGAAAGGGAAGAAGTCGAAGTAGTGCAGTAGTTAGTTCTTC
CATTACAGTAGAGCCAGCCAGGAGGAAGTGAAAGTAGAGGCAGGAAGTAGTAAGTTCTTACAGGG
CAGTAGGAAGTGGAAGAGTTCGAAGTTCAGTTCTGTAGCTAGCTTTATGGCTTGACTTGGTCCTT
CCAACCAAGTAAGCAAAAGAAAGGAGAAGTGCCCTCAGTAGCTTAGCATCATAAACAGTACTAGG
TTAGGATCATAAACAGGACTAGGTCAAGATCATATACTAGTTTAACAGCATAACACAGTAAAGAG
GTCAGGATCATTAGGTCAGGAGCAGAACACAGTAAGAGTGAAGGATCATAGACTAACTAGTTTAA
CAGCGAGTAGGAGTGAAACTGCTCGACCAAAGGGAGAGGAGTGAA
Found at i:859677 original size:23 final size:23
Alignment explanation
Indices: 859646--859702 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
859636 CCTCAGTAGC
* *
859646 TTAGCATCATAAACAGTACTAGG
1 TTAGGATCATAAACAGGACTAGG
859669 TTAGGATCATAAACAGGACTAGG
1 TTAGGATCATAAACAGGACTAGG
* *
859692 TCAAGATCATA
1 TTAGGATCATA
859703 TACTAGTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (23 bp):
TTAGGATCATAAACAGGACTAGG
Left flanking sequence: Indices 859146 -- 859645
AATCCAGTACGAACTAACATACATACAGCAAGTACAGTAGTAACATACAGACAGACAGAGAAGAA
GGAAATCCAGTACGAACTAACATACAGAGAAGAAGTCAATCCAGTACCAACTAACATACAGACAG
GAAGTACAGTAACATACAGACAGAGAAGAAGGACAGTAGGAACATACAGAGAGGAAGGAAGTACA
GTAACATACATACAGAGGTTCACGGCAGGGAATGAATCAATAGAGTTTATTAATCAGTACACAGA
CAGAAAGGTAATGCGGAATGGCAGTACGGAAAGGGAAGAAGTCGAAGTAGTGCAGTAGTTAGTTC
TTCCATTACAGTAGAGCCAGCCAGGAGGAAGTGAAAGTAGAGGCAGGAAGTAGTAAGTTCTTACA
GGGCAGTAGGAAGTGGAAGAGTTCGAAGTTCAGTTCTGTAGCTAGCTTTATGGCTTGACTTGGTC
CTTCCAACCAAGTAAGCAAAAGAAAGGAGAAGTGCCCTCAGTAGC
Right flanking sequence: Indices 859703 -- 860202
TACTAGTTTAACAGCATAACACAGTAAAGAGGTCAGGATCATTAGGTCAGGAGCAGAACACAGTA
AGAGTGAAGGATCATAGACTAACTAGTTTAACAGCGAGTAGGAGTGAAACTGCTCGACCAAAGGG
AGAGGAGTGAAACTGTGAGACAAAATAAAGCGAAGGAGTGAAACAGTGAGACCAAAGGGAGAGGA
GTGAGGGATCAGAGAAAGAAGCTGAGGTTGTTCTGGTTGTTACAGCAGAGAAAGAGAAGAAATAG
TTCAACCCCGAGTAAAAGAAGTAAGCAAACTCAACTCACTGACAGAGCTTTACCTAGAAATAGGA
GTTAAGGTAAGAAGGAGAATGAATCTATCTTTCGTTGAGTCTCATTCATCTTCTCTTGCTTTCTC
TTCGGTTACTTAGAATAACAAGGTGAAGTAACAAAGGGTTGAGGTTCAGTCTTTCTCTTTGATTT
ACTCTTGAGTGAGTAAAGGCAGATTCTTCTTCTTCTTTCTTTCCT
Found at i:871784 original size:32 final size:32
Alignment explanation
Indices: 871743--871828 Score: 127
Period size: 37 Copynumber: 2.5 Consensus size: 32
871733 AAAGCCGAGG
871743 TCGCCCCTCTCCTTTCCAGTCGAGCTGCTTCT
1 TCGCCCCTCTCCTTTCCAGTCGAGCTGCTTCT
871775 TCGCCCCTCTCCTTTCCTTTCCAGTCGAGCTGCTTCT
1 TCG-CCC-CT-C--TCCTTTCCAGTCGAGCTGCTTCT
871812 TCGCCCCTCTCCTTTCC
1 TCGCCCCTCTCCTTTCC
871829 TTTCCAGTCG
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
32 11 0.22
33 3 0.06
34 3 0.06
35 3 0.06
36 3 0.06
37 26 0.53
ACGTcount: A:0.05, C:0.47, G:0.13, T:0.36
Consensus pattern (32 bp):
TCGCCCCTCTCCTTTCCAGTCGAGCTGCTTCT
Left flanking sequence: Indices 871243 -- 871742
TCACTTTTCTAGCTGCTAATTTAGCCAAGGTTCTATCTATTTAAAGCTAGTTACGTATGTACGAA
AGTTGAAGCTGAACGATGGACTGTAAAGTGTTTAAGTAATGCTTTCAAGCGAAGGCTATCATTGA
TAGATAAGGGAAGATCCGACACCGAAGAGGAATTAACAGAAACAGATATTCTCAGATGCGCGTTA
GCGGCTTAATAACCGTGGACTGCATTAAAGGGGACTTGGTAGGACAGCATGGGATGGCCCTTCTT
GAACTAACCGGAAAGAAGTAAAGAAGTACAGGTTTTCTTGCTAGGTTCGATGAAGTTTGAGATGA
TGCACAATTTCAACATTGACAAAAAAGAAAGACTATCGAGAAAATCTCTGTGGTTGTTTATAAAC
GCTGCACGCTCCTTAAAGAAAAGTCGTTGCTTGCCTATCTCAGTAGGAAATTGGAACAGTCTCCG
ATTTCAAAGGCGAAGCAGCTACGTAGTTCGGTTCGAAAGCCGAGG
Right flanking sequence: Indices 871829 -- 872328
TTTCCAGTCGAGCTTCTTCGCCCCTTCCCCTATGGGTCTCAGAGCTCCGCCCCTGAACCTTAGCA
GCTTTGAAAGCCGAAACTCCTACTTCTTTCCGACGGACCATTAATTAATTTATTCTATCCCCATA
TAACTGTCAAAGTTCGTAAGAGGTTTTTCACTAATAGCTGGAGCAAAAAGCAAATAAATTCTATC
CAGCATAGGGGTCAAACCTTGTCATAGCTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAAT
TCTATCTTTCCCGTATTTTGGGGGTATTTCTCTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAG
AAATTCTATCTTTCCCGTATTTTAGGGGATCAAATCGATGCTTTACCCTCTTTTTGGGGATCAAA
TCGATGCTTTCCCCTATTTTTCGGGATAAAATGGATGCTTTACCCTATTTTGAGGGAGAAAAGTC
TATCTTTCCCGTATTTTAGGGGATCAAAGTCTATCTTTCCCGTAT
Found at i:871802 original size:37 final size:37
Alignment explanation
Indices: 871752--871853 Score: 183
Period size: 37 Copynumber: 2.8 Consensus size: 37
871742 GTCGCCCCTC
871752 TCCTTTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTT
1 TCCTTTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTT
871789 TCCTTTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTT
1 TCCTTTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTT
871826 TCCTTTCCAGTCGA---GCTTCTTCGCCCCT
1 TCCTTTCCAGTCGAGCTGCTTCTTCGCCCCT
871854 TCCCCTATGG
Statistics
Matches: 65, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
34 14 0.22
37 51 0.78
ACGTcount: A:0.06, C:0.43, G:0.14, T:0.37
Consensus pattern (37 bp):
TCCTTTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTT
Left flanking sequence: Indices 871252 -- 871751
TAGCTGCTAATTTAGCCAAGGTTCTATCTATTTAAAGCTAGTTACGTATGTACGAAAGTTGAAGC
TGAACGATGGACTGTAAAGTGTTTAAGTAATGCTTTCAAGCGAAGGCTATCATTGATAGATAAGG
GAAGATCCGACACCGAAGAGGAATTAACAGAAACAGATATTCTCAGATGCGCGTTAGCGGCTTAA
TAACCGTGGACTGCATTAAAGGGGACTTGGTAGGACAGCATGGGATGGCCCTTCTTGAACTAACC
GGAAAGAAGTAAAGAAGTACAGGTTTTCTTGCTAGGTTCGATGAAGTTTGAGATGATGCACAATT
TCAACATTGACAAAAAAGAAAGACTATCGAGAAAATCTCTGTGGTTGTTTATAAACGCTGCACGC
TCCTTAAAGAAAAGTCGTTGCTTGCCTATCTCAGTAGGAAATTGGAACAGTCTCCGATTTCAAAG
GCGAAGCAGCTACGTAGTTCGGTTCGAAAGCCGAGGTCGCCCCTC
Right flanking sequence: Indices 871854 -- 872353
TCCCCTATGGGTCTCAGAGCTCCGCCCCTGAACCTTAGCAGCTTTGAAAGCCGAAACTCCTACTT
CTTTCCGACGGACCATTAATTAATTTATTCTATCCCCATATAACTGTCAAAGTTCGTAAGAGGTT
TTTCACTAATAGCTGGAGCAAAAAGCAAATAAATTCTATCCAGCATAGGGGTCAAACCTTGTCAT
AGCTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTGGGGGT
ATTTCTCTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAG
GGGATCAAATCGATGCTTTACCCTCTTTTTGGGGATCAAATCGATGCTTTCCCCTATTTTTCGGG
ATAAAATGGATGCTTTACCCTATTTTGAGGGAGAAAAGTCTATCTTTCCCGTATTTTAGGGGATC
AAAGTCTATCTTTCCCGTATTTTAGGGGATAAAATGGATGCTTTA
Found at i:872136 original size:69 final size:69
Alignment explanation
Indices: 872051--872181 Score: 253
Period size: 69 Copynumber: 1.9 Consensus size: 69
872041 CTTGTCATAG
*
872051 CTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTGGGGGTAT
1 CTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
872116 TTCT
66 TTCT
872120 CTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGG
1 CTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGG
872182 ATCAAATCGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (69 bp):
CTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
TTCT
Left flanking sequence: Indices 871551 -- 872050
GATGAAGTTTGAGATGATGCACAATTTCAACATTGACAAAAAAGAAAGACTATCGAGAAAATCTC
TGTGGTTGTTTATAAACGCTGCACGCTCCTTAAAGAAAAGTCGTTGCTTGCCTATCTCAGTAGGA
AATTGGAACAGTCTCCGATTTCAAAGGCGAAGCAGCTACGTAGTTCGGTTCGAAAGCCGAGGTCG
CCCCTCTCCTTTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTTTCCTTTCCAGTCGAGCTGCTTC
TTCGCCCCTCTCCTTTCCTTTCCAGTCGAGCTTCTTCGCCCCTTCCCCTATGGGTCTCAGAGCTC
CGCCCCTGAACCTTAGCAGCTTTGAAAGCCGAAACTCCTACTTCTTTCCGACGGACCATTAATTA
ATTTATTCTATCCCCATATAACTGTCAAAGTTCGTAAGAGGTTTTTCACTAATAGCTGGAGCAAA
AAGCAAATAAATTCTATCCAGCATAGGGGTCAAACCTTGTCATAG
Right flanking sequence: Indices 872182 -- 872681
ATCAAATCGATGCTTTACCCTCTTTTTGGGGATCAAATCGATGCTTTCCCCTATTTTTCGGGATA
AAATGGATGCTTTACCCTATTTTGAGGGAGAAAAGTCTATCTTTCCCGTATTTTAGGGGATCAAA
GTCTATCTTTCCCGTATTTTAGGGGATAAAATGGATGCTTTACCCTTCTTTCCCTCGGGAACTCG
ACTGTAAACACTCAAAAAACTCGAATTCTCCTATCTCTCCCTTATTTTTTGGGGATCAAAGTCTA
TCTTTACCCTATTTTTCGGGATAAAATCGAGGTATTTAGGGCCGAGGTAATGTTGAAGTAGAAGG
AAAGACTATCGAAGAATCAATTCGACTTAACTGTAAGGAAAGACGAAAGATTCCTTCTTTCTCTT
TCTCTTCTCCGAAACTCTCTCTTCATTCTTTCTCTTTCTCTGATCCTTCTTTCACTTCTCAAACA
CTCTTTCCCTCGGTAAAGCTATTTTCATTCTCCTGAACCTCATAC
Found at i:872216 original size:31 final size:32
Alignment explanation
Indices: 872163--872356 Score: 181
Period size: 31 Copynumber: 6.2 Consensus size: 32
872153 GAAATTCTAT
*
872163 CTTT-CCCGTATTTTAGGGGATCAAATCGATG
1 CTTTACCCGTATTTTAGGGGATAAAATCGATG
* * *
872194 CTTTACCC-TCTTTTTGGGGATCAAATCGATG
1 CTTTACCCGTATTTTAGGGGATAAAATCGATG
* ** *
872225 CTTT-CCCCTATTTTTCGGGATAAAATGGATG
1 CTTTACCCGTATTTTAGGGGATAAAATCGATG
* *
872256 CTTTACCC-TATTTTGAGGGAGA-AAAGTCTAT-
1 CTTTACCCGTATTTT-AGGG-GATAAAATCGATG
* *
872287 CTTT-CCCGTATTTTAGGGGATCAAAGTCTAT-
1 CTTTACCCGTATTTTAGGGGAT-AAAATCGATG
*
872318 CTTT-CCCGTATTTTAGGGGATAAAATGGATG
1 CTTTACCCGTATTTTAGGGGATAAAATCGATG
872349 CTTTACCC
1 CTTTACCC
872357 TTCTTTCCCT
Statistics
Matches: 139, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
29 2 0.01
30 16 0.12
31 102 0.73
32 17 0.12
33 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (32 bp):
CTTTACCCGTATTTTAGGGGATAAAATCGATG
Left flanking sequence: Indices 871663 -- 872162
TTGCCTATCTCAGTAGGAAATTGGAACAGTCTCCGATTTCAAAGGCGAAGCAGCTACGTAGTTCG
GTTCGAAAGCCGAGGTCGCCCCTCTCCTTTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTTTCCT
TTCCAGTCGAGCTGCTTCTTCGCCCCTCTCCTTTCCTTTCCAGTCGAGCTTCTTCGCCCCTTCCC
CTATGGGTCTCAGAGCTCCGCCCCTGAACCTTAGCAGCTTTGAAAGCCGAAACTCCTACTTCTTT
CCGACGGACCATTAATTAATTTATTCTATCCCCATATAACTGTCAAAGTTCGTAAGAGGTTTTTC
ACTAATAGCTGGAGCAAAAAGCAAATAAATTCTATCCAGCATAGGGGTCAAACCTTGTCATAGCT
TTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTGGGGGTATTT
CTCTTTTTCCCTTAATAGCAGCAGCTTCAAGAAAAGAAATTCTAT
Right flanking sequence: Indices 872357 -- 872856
TTCTTTCCCTCGGGAACTCGACTGTAAACACTCAAAAAACTCGAATTCTCCTATCTCTCCCTTAT
TTTTTGGGGATCAAAGTCTATCTTTACCCTATTTTTCGGGATAAAATCGAGGTATTTAGGGCCGA
GGTAATGTTGAAGTAGAAGGAAAGACTATCGAAGAATCAATTCGACTTAACTGTAAGGAAAGACG
AAAGATTCCTTCTTTCTCTTTCTCTTCTCCGAAACTCTCTCTTCATTCTTTCTCTTTCTCTGATC
CTTCTTTCACTTCTCAAACACTCTTTCCCTCGGTAAAGCTATTTTCATTCTCCTGAACCTCATAC
TTTGACGATATTCCCTTGCTTGCCTTATGGAGGTCAAAGTAGCTCTTTCCTTCACCTCTGCTTCT
CTCCTTCACCTACACCTTCTTGCTTTCACTGATCTTTTCGCCTCTCCCTATTTTTTAGGCCATTG
AACTATTCCCTTCCCTTCCCCTGCCCCTGTATTCCCTGATTATTC
Found at i:888473 original size:35 final size:35
Alignment explanation
Indices: 888427--888518 Score: 148
Period size: 35 Copynumber: 2.6 Consensus size: 35
888417 TCTCAGACCA
888427 AGGAGCGAAAGCAACGAGACCAAGAGAAGAGGGAG
1 AGGAGCGAAAGCAACGAGACCAAGAGAAGAGGGAG
**
888462 AGGAGCGAAAGCAACTCGACCAAGAGAAGAGGGAG
1 AGGAGCGAAAGCAACGAGACCAAGAGAAGAGGGAG
*
888497 AGGAGCGAAGCGCAACGAGACC
1 AGGAGCGAA-AGCAACGAGACC
888519 GTAAGCTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 42 0.82
36 9 0.18
ACGTcount: A:0.42, C:0.18, G:0.38, T:0.01
Consensus pattern (35 bp):
AGGAGCGAAAGCAACGAGACCAAGAGAAGAGGGAG
Left flanking sequence: Indices 887927 -- 888426
AGAGAGTGAAAGAAACCCAAGTTCAAGGGATCAAGAACAGTGAAATCTGGTTCCAGTTGGTTAGT
AGCGAACAGAAGAAAGAACATAGGTGATTGAGCGAAGCAATGAGACCTATAAAGAATGAGCTTGA
CCTGATGATAGTTTAGAGGTAAAGGTCAAGTAGGGAAGGAGAATGCATCCATCCTCAGTCTTTAC
TTACAGAGTGACGGAGAAAGAATCAGAATCAATCCAGAGGAGAATATAGAGAGGTTCGTTCAGTA
TCAGTAGTTCAGGAGCGAAGACGAAGAGGAGAAGAGTTTACTGTTCAATGACGTCAGCAGGATTT
TCTTGTCCAAAGGAATCCGTAGGATCAGGATAATTCATCAAATAAGGAGTCTCGTCTTTCTTTAC
TGTTCAGGCAGGGACAGAGTAAATCAATTAGCTGCAGCAGCGGCCGACAGGGGAAGGAGCGAGTG
AGACCGAGAGGTCGAATGAGTGAAGGCAATGGAATTCTCAGACCA
Right flanking sequence: Indices 888519 -- 889018
GTAAGCTTTACTACCTTGTGAAAGAGTGACATCAGGGAGAGTCTATTCATTAGCAGCTTTATCCC
TTGTTCAATCAGGTCAGGGAATAGCGTGAAGAAGAATGAATCGATAGTGTTTACAGTCGAGTAAA
AGAGAGAGAAAGAAGGTGAAGGAGAATGAATCTTCTTGAGTTCAGTCTTTAGTTCTTGAGTCTTT
CAAAGCAGCTAACTCAATAAATAAGGCAATGGAAGCCACTTTACCGACAGGTTCAAGAGCCGGAA
GTAGCTCAGGGCTAGAAAGGCAAGGTCAGGGAATAGTAGCTCGACTCGTCAGGATTGAATCTGAA
TTTCCTCTCCTGTAAAGAAAGCTATTTTGCAGCTAACTCCTGAATTTCTTCCTTACGGTTCCTGT
TCATTCTCTGATTCTTATTCTTCTTTCATTCATTTAGCTTGACCTCGTGAAAGAGTGAAATCAGT
CTCATTCTTCGATAGTCTTGCCTTCCCCTTAATGAAAGAAGAGAT
Found at i:889754 original size:10 final size:10
Alignment explanation
Indices: 889714--889774 Score: 77
Period size: 10 Copynumber: 5.9 Consensus size: 10
889704 CCGCCCTAAA
*
889714 AAAGCAGAATC
1 AAAG-AGAAGC
*
889725 AAAGCAGAATC
1 AAAG-AGAAGC
*
889736 AAAGGGAAGC
1 AAAGAGAAGC
889746 AAAGAGAAGC
1 AAAGAGAAGC
889756 AAAGAGAAGC
1 AAAGAGAAGC
889766 AAAGAGAAG
1 AAAGAGAAG
889775 AGCTGGTAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
10 32 0.68
11 15 0.32
ACGTcount: A:0.57, C:0.11, G:0.28, T:0.03
Consensus pattern (10 bp):
AAAGAGAAGC
Left flanking sequence: Indices 889214 -- 889713
GTTTCATTTTCTTCTTCAATCAATTCATTCTCTCTCTTTGTCTTTTACCTCGTGAAAGAACTGAC
TTAAACGACGTGCTTGCTTTACCTCCTTCAATCAGGTCAGGTCATATGGGTGAAGTAGCTCAGGA
GGGGTGATTCCGGTTCCGTTATAGAAGCTGATAGTTTAGGAGGTTCAGTCTCATGAATAAGAAGG
AGGAGTATTTCTCCTTTTCTTTGACCTTGTTGAATCTGGTGAAGGAGGGAAGCCACTTTCCAGTT
CAAGAAGGGAGACGAAAGAAGCCGAGGTTCAGCAGAATGAATCGGGAAGGTGCGAAGCTGTGAGC
CCGAGTTTCGCTCCTTCAATAAGGGAGGGGAGGGGGTGGAGTCCGTAAAAGGAGACTCAACCTAC
TCCCTTTGTCTAGGGCTTCCCCTGTCTAGGGGCGCAGCTGGCTAGGGAAGCGGCTTTCGCTGTTG
AAAGAATAACTCCGCGAAGGAACCTTTCCTTTGTTCCGCCCTAAA
Right flanking sequence: Indices 889775 -- 890274
AGCTGGTAAAGGAGTGCCCTCCTTGTTTACACCGGTCAGGGAATATCATCAAAGAAAAGGAGAAA
GAATCCAGAGGTTCCCCCCAGAGAATGAATAAGGCTTGAGTTGAGTCTTGAGTCTGAGTTTTCAG
TGAAAGAAGAAGAAGAAGATAGTCCTGTTAAGGTTCAGGTTCTTCAAACACCTAGTTATTTACCG
AGTTCAAAGAGATAGTTCAACCAACCCTCATTGAATCAGGTCAGGTAATAGAGTCAAAGGGTCAG
GATCATTCTTTCTTGTTGAGTCCCTTTTGCTTACTCAACCTACTCCCTCTAGGGAAGACGCTTTA
CCCAGTCTTTGTTTGAATAGTCTTTCCCTAGTTCAAGAATAAATAGGTGAAGGAGAATGAAGAGT
ATTTCTCTTTTACAGTTCAATCAGGGACAGGTTCAGTAGTGATTGAGAATGAATCTTTCATTAGA
TTCTTCAAGAAATTCATGAATAGACAGACTCTCCCTTGTTCCCGT
Found at i:891486 original size:38 final size:38
Alignment explanation
Indices: 891430--891547 Score: 130
Period size: 38 Copynumber: 3.1 Consensus size: 38
891420 ATAGTCTTTC
* **
891430 CTGACAGTTCACTCTCATTGATTCTTCTTGAGGATTGA
1 CTGACAGTTAACGATCATTGATTCTTCTTGAGGATTGA
* * * * * **
891468 CTTAGAGTTCAGGATCATTGATTCTTCGAT-AGTCTTGA
1 CTGACAGTTAACGATCATTGATTCTTC-TTGAGGATTGA
891506 CTGACAGTTAACGATCATTGATTCTTCTTGAGGATTGA
1 CTGACAGTTAACGATCATTGATTCTTCTTGAGGATTGA
891544 CTGA
1 CTGA
891548 AACTTCATAA
Statistics
Matches: 63, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
37 1 0.02
38 61 0.97
39 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (38 bp):
CTGACAGTTAACGATCATTGATTCTTCTTGAGGATTGA
Left flanking sequence: Indices 890930 -- 891429
AGGCTTGAAGAGCGGGAGAGGATTTCATTGACTCAACTGGAAAGGAGAGAGGGAAGCATACGTAG
GACAGTAGGCCCGAAAGCTCTTAGTTAGCAAGTAGGCGCTGCGCTGTATTGCTAAGAGTCTTTCC
TTGTTTTTCACTTGTTCAATACCGGTACGCTATGAGCAAAGCGAATAGAGGAAGGCCCGGACCGT
TCCGGGAGCACCAACTACCATGGAATCTTGTAGCAACTATCTTGGAGTGAGGGGTAGTTGACTTC
GGCATCTATTCTTTCGGAGGTAGGTAGTTCTGAGGGAGCCCCATGCGATGCGTATATATCAAGAG
GACTACGGCCTCCTCCACTAAAAGCTTTTCAGCTCCTTCTTCTTTCGTTTCGTCTTGACTTGAAA
GACTTTCAGGTTCAGTAGTTCACGATCATTGATTCTTCGAGAGTGTTTACAGGAGAATGAATCGA
GAGGAGAGGATCAGAGAAAGAGAAAGAAGGAATCGATAGTCTTTC
Right flanking sequence: Indices 891548 -- 892047
AACTTCATAATTACCTCGGCCCTCAATCCCGGTATTTGATCCCGAAAAATAGGGGAAAGATACAC
TTTTATACCCTAAAATACGGGAAAGATAGAATGATTGATAGTTTTTTGACTGTTTACAGTCTCGT
TACCGAGGGAAATAGGGGAAAATGGACTCTTTTATACCCAAAAACACGGGAAAGATAGAATGATT
TCTTGTTTTTTGAGTGTTTACAGTCTCGTTACCGAGGGAAATAGGGTCAAATGGACGATTTGATA
CCCAAAAACACGGGAAAGATAGAAAAGAATTGATTTCCTATGCTGCTATTAAGGGAAAAAGCTAT
GACAAGGTTTGACCCCTATGCTAGATAGAAAATCTTTGATTTCAGTTCCAGCTATTAAGGGAAAA
CCCCTTTTAATGTTTTACCCCTATGCTGGATAGAAAATATTTGATTTCAGCTCCCGCTATTAGTG
AAAAAGGTCTTACGAACTTTGACCCCTATGTTTGTTGGATAGAAT
Found at i:891754 original size:94 final size:94
Alignment explanation
Indices: 891594--891831 Score: 347
Period size: 94 Copynumber: 2.5 Consensus size: 94
891584 TGATCCCGAA
* *
891594 AAATAGGGGAAAGAT--ACACTTTTATACCCTAAAATACGGGAAAGATAGAATGATTGATAGTTT
1 AAATAGGGGAAA-ATGGACACTTTTATACCCAAAAACACGGGAAAGATAGAATGATTGATAGTTT
891657 TTTGACTGTTTACAGTCTCGTTACCGAGGG
65 TTTGACTGTTTACAGTCTCGTTACCGAGGG
* ** *
891687 AAATAGGGGAAAATGGACTCTTTTATACCCAAAAACACGGGAAAGATAGAATGATTTCTTGTTTT
1 AAATAGGGGAAAATGGACACTTTTATACCCAAAAACACGGGAAAGATAGAATGATTGATAGTTTT
*
891752 TTGAGTGTTTACAGTCTCGTTACCGAGGG
66 TTGACTGTTTACAGTCTCGTTACCGAGGG
** *
891781 AAATAGGGTCAAATGGACGA-TTTGATACCCAAAAACACGGGAAAGATAGAA
1 AAATAGGGGAAAATGGAC-ACTTTTATACCCAAAAACACGGGAAAGATAGAA
891832 AAGAATTGAT
Statistics
Matches: 131, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
92 2 0.02
93 12 0.09
94 117 0.89
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.27
Consensus pattern (94 bp):
AAATAGGGGAAAATGGACACTTTTATACCCAAAAACACGGGAAAGATAGAATGATTGATAGTTTT
TTGACTGTTTACAGTCTCGTTACCGAGGG
Left flanking sequence: Indices 891094 -- 891593
AGCAAAGCGAATAGAGGAAGGCCCGGACCGTTCCGGGAGCACCAACTACCATGGAATCTTGTAGC
AACTATCTTGGAGTGAGGGGTAGTTGACTTCGGCATCTATTCTTTCGGAGGTAGGTAGTTCTGAG
GGAGCCCCATGCGATGCGTATATATCAAGAGGACTACGGCCTCCTCCACTAAAAGCTTTTCAGCT
CCTTCTTCTTTCGTTTCGTCTTGACTTGAAAGACTTTCAGGTTCAGTAGTTCACGATCATTGATT
CTTCGAGAGTGTTTACAGGAGAATGAATCGAGAGGAGAGGATCAGAGAAAGAGAAAGAAGGAATC
GATAGTCTTTCCTGACAGTTCACTCTCATTGATTCTTCTTGAGGATTGACTTAGAGTTCAGGATC
ATTGATTCTTCGATAGTCTTGACTGACAGTTAACGATCATTGATTCTTCTTGAGGATTGACTGAA
ACTTCATAATTACCTCGGCCCTCAATCCCGGTATTTGATCCCGAA
Right flanking sequence: Indices 891832 -- 892331
AAGAATTGATTTCCTATGCTGCTATTAAGGGAAAAAGCTATGACAAGGTTTGACCCCTATGCTAG
ATAGAAAATCTTTGATTTCAGTTCCAGCTATTAAGGGAAAACCCCTTTTAATGTTTTACCCCTAT
GCTGGATAGAAAATATTTGATTTCAGCTCCCGCTATTAGTGAAAAAGGTCTTACGAACTTTGACC
CCTATGTTTGTTGGATAGAATTAATTAATTCATGGTCTTTACTGGTTCCGGAATAAGGAGTTGAG
GATTGACTTCCAGTGAACGATGACGAATAAGGAGTGTTTACAGGAGAATGAATCGATCGTCTTTC
CTTCCCGGATTGAACTGTAAAGTCGGATAGTCTTCGGGTTCTGGTTCAGTAGCTCTCGGTTCTGG
TTCCGGATTGAATTGACTCGACTGTATAGGTGACGGTTCCTTCGCTTCTCTTTCTTTCATTCTCT
TTCTGTAAAGGAAAATTCATCTTTCTTCCCCCTTCATTTCTTCTT
Found at i:892028 original size:70 final size:70
Alignment explanation
Indices: 891880--892032 Score: 166
Period size: 70 Copynumber: 2.2 Consensus size: 70
891870 TATGACAAGG
* * * *
891880 TTTGACCCCTATGCTAGATAGAAAATCTTTGATTTCAGTTCCAGCTATTAAGGGAAAACCCCTTT
1 TTTGACCCCTATGCTAGATAGAAAATATTTGATTTCAGCTCCAGCTATTAAGGGAAAACACCTCT
**
891945 TAATG
66 TAAAC
* * * * **
891950 TTTTACCCCTATGCTGGATAGAAAATATTTGATTTCAGCTCCCGCTATT-AGTGAAAA-AGGTCT
1 TTTGACCCCTATGCTAGATAGAAAATATTTGATTTCAGCTCCAGCTATTAAGGGAAAACACCTCT
892013 TACGAAC
66 TA--AAC
892020 TTTGACCCCTATG
1 TTTGACCCCTATG
892033 TTTGTTGGAT
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
68 4 0.06
69 7 0.10
70 57 0.84
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (70 bp):
TTTGACCCCTATGCTAGATAGAAAATATTTGATTTCAGCTCCAGCTATTAAGGGAAAACACCTCT
TAAAC
Left flanking sequence: Indices 891380 -- 891879
ATCGAGAGGAGAGGATCAGAGAAAGAGAAAGAAGGAATCGATAGTCTTTCCTGACAGTTCACTCT
CATTGATTCTTCTTGAGGATTGACTTAGAGTTCAGGATCATTGATTCTTCGATAGTCTTGACTGA
CAGTTAACGATCATTGATTCTTCTTGAGGATTGACTGAAACTTCATAATTACCTCGGCCCTCAAT
CCCGGTATTTGATCCCGAAAAATAGGGGAAAGATACACTTTTATACCCTAAAATACGGGAAAGAT
AGAATGATTGATAGTTTTTTGACTGTTTACAGTCTCGTTACCGAGGGAAATAGGGGAAAATGGAC
TCTTTTATACCCAAAAACACGGGAAAGATAGAATGATTTCTTGTTTTTTGAGTGTTTACAGTCTC
GTTACCGAGGGAAATAGGGTCAAATGGACGATTTGATACCCAAAAACACGGGAAAGATAGAAAAG
AATTGATTTCCTATGCTGCTATTAAGGGAAAAAGCTATGACAAGG
Right flanking sequence: Indices 892033 -- 892532
TTTGTTGGATAGAATTAATTAATTCATGGTCTTTACTGGTTCCGGAATAAGGAGTTGAGGATTGA
CTTCCAGTGAACGATGACGAATAAGGAGTGTTTACAGGAGAATGAATCGATCGTCTTTCCTTCCC
GGATTGAACTGTAAAGTCGGATAGTCTTCGGGTTCTGGTTCAGTAGCTCTCGGTTCTGGTTCCGG
ATTGAATTGACTCGACTGTATAGGTGACGGTTCCTTCGCTTCTCTTTCTTTCATTCTCTTTCTGT
AAAGGAAAATTCATCTTTCTTCCCCCTTCATTTCTTCTTGAACTGTAAAGGTGATTGAGCTGATC
TTTCTCTCTCTTAGGTTACAGTTAAAGAATACTGAAAGAACTACAACAAACAAAGAACAGATAAA
AGGGAAGGGGCAGGGGAAGGTACATTAATGCAGGGTCAGGAGAAAGAATCTTGTCTTCGTCTTTT
CTTCCTTAGATCAGATGAGAGTCACCCTTAGAAGTCAGGTCAGGT
Found at i:893389 original size:70 final size:70
Alignment explanation
Indices: 893259--893390 Score: 185
Period size: 70 Copynumber: 1.9 Consensus size: 70
893249 ATTTAAGCTT
* * * *
893259 CAGCTATTAAGGGAAAACCTCTTTTACTGTTTTACCCCTATGGTGGATACAAAATCTTTTCTTTC
1 CAGCTATTAAGGGAAAACCTCTTTTAATGTTTTACCCCTATGCTAGATACAAAAGCTTTTCTTTC
893324 CTATG
66 CTATG
** *
893329 CAGCTATT-AGGGAAAAAGGTCTTTTAATGTTTTACCCCTATGCTAGATACAAAAGGTTTTCT
1 CAGCTATTAAGGG-AAAACCTCTTTTAATGTTTTACCCCTATGCTAGATACAAAAGCTTTTCT
893391 CTTTCGTCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
69 4 0.07
70 50 0.93
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (70 bp):
CAGCTATTAAGGGAAAACCTCTTTTAATGTTTTACCCCTATGCTAGATACAAAAGCTTTTCTTTC
CTATG
Left flanking sequence: Indices 892759 -- 893258
TGACACCTGATTCTCATCCAGCTTACCTTCTTCAATAAGGGAAGGTAAAGGTAATGTGAAGGAGC
CGGAGTTCAGTTCCGTCAGTAGTTCAGGAGTTTACAGAGTGAAGTAGTTCTGTCTCATTCATAAG
GAGTAGAGGCTTGACTTGAAAGACTTGAAGGTTCAGTAGTTCACGATCATTGATTCTTCTTTCGG
ATTGACTGACTGTTCAGGATCAAGATCAAGAAGGAATCTTGAGGATTGACTTACAGTGAACGATC
ATTGATTCTTCGATAGTCTTTCCTTCTACTTCTAAATTACCTTTACTAGATTTGATCCCCTAAAA
TACGGGATAGATAGAATTTCTTTTCTTTTTGCTGCTGCTATTAAGGGAAAAGGGTCTTTTACTCT
TTTACAGTTATATGGAGATAGAATTTCTTTTCTTTCAGCTTCAGCTATTAAGGGAAAAAGAGAAA
TACCCCTAAAATACGGGAAAGATAGAATTTCTTTGATTTAAGCTT
Right flanking sequence: Indices 893391 -- 893890
CTTTCGTCTTTCCTTACAGTTAAGTCGAATTGATTCTTCGAGAGTTGAGGATCAGAGAAAGAAGA
AATAGTCTGTCTTGTCTTTACTTACCGAGTTCAATCAGGTTCATGAATGAGTAAGTAGTTCTCCT
AGCAAGTCCGTCTTTAACTTAACTTACCTTCTTGTTCAATCAGGTTCATCAGTAAGTAGTTGTTC
TCCTGGCAAGTCTAATTAATCTTTATGTTTCTCTCCCGGAAAGGATCAGAATTAGTAGAATAGAT
AGGTGTTCCAGAGCCGGAGTTCAGTAGCTAAAGGTGTTACGGAGCCGGAGTTCAGTAGCTAAGCT
AAGGATCATGAATCGGAGCTTGGCGGCTGTTAGACCAATAGTAATGCGTGGGCGAATGAAGCAGC
CACTTTACAGTAAAGAAGAATGAATTGTTTAATATGCTTTACCGAGTTCATCAATCAATTAGGGG
AAAGGAGTGTCGGTAAGGATCCAGAATGTTTGTTGAGCCTTTCCT
Found at i:893686 original size:31 final size:31
Alignment explanation
Indices: 893651--893712 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
893641 TAGAATAGAT
*
893651 AGGTGTTCCAGAGCCGGAGTTCAGTAGCTAA
1 AGGTGTTACAGAGCCGGAGTTCAGTAGCTAA
*
893682 AGGTGTTACGGAGCCGGAGTTCAGTAGCTAA
1 AGGTGTTACAGAGCCGGAGTTCAGTAGCTAA
893713 GCTAAGGATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.23
Consensus pattern (31 bp):
AGGTGTTACAGAGCCGGAGTTCAGTAGCTAA
Left flanking sequence: Indices 893151 -- 893650
TACAGTTATATGGAGATAGAATTTCTTTTCTTTCAGCTTCAGCTATTAAGGGAAAAAGAGAAATA
CCCCTAAAATACGGGAAAGATAGAATTTCTTTGATTTAAGCTTCAGCTATTAAGGGAAAACCTCT
TTTACTGTTTTACCCCTATGGTGGATACAAAATCTTTTCTTTCCTATGCAGCTATTAGGGAAAAA
GGTCTTTTAATGTTTTACCCCTATGCTAGATACAAAAGGTTTTCTCTTTCGTCTTTCCTTACAGT
TAAGTCGAATTGATTCTTCGAGAGTTGAGGATCAGAGAAAGAAGAAATAGTCTGTCTTGTCTTTA
CTTACCGAGTTCAATCAGGTTCATGAATGAGTAAGTAGTTCTCCTAGCAAGTCCGTCTTTAACTT
AACTTACCTTCTTGTTCAATCAGGTTCATCAGTAAGTAGTTGTTCTCCTGGCAAGTCTAATTAAT
CTTTATGTTTCTCTCCCGGAAAGGATCAGAATTAGTAGAATAGAT
Right flanking sequence: Indices 893713 -- 894212
GCTAAGGATCATGAATCGGAGCTTGGCGGCTGTTAGACCAATAGTAATGCGTGGGCGAATGAAGC
AGCCACTTTACAGTAAAGAAGAATGAATTGTTTAATATGCTTTACCGAGTTCATCAATCAATTAG
GGGAAAGGAGTGTCGGTAAGGATCCAGAATGTTTGTTGAGCCTTTCCTTCCTGCCTGTTACGTCT
CAGGCATCGAGAGTTGAGTGTTTACGGTTCCTAAAAGAATATAAATAGGCAAGCAATATAAGGAA
TAAAGAATGAATAGGGGATATCGGAAAGAAAAGGTAAAGGAGTGAATGAAAGAAGGTTACGGGGA
AGGGGAAAGAGTGAGTGAAAGCAAGCCAGCCAGTTCCTTCCAACCCTGTAAGAAAGAAAGCAAGA
AAGGAGGTAAGGAGGAGAAGCTAAGTTCAGGAGAGAAGCTAAGTAAGCTCCTTTACCGAGAAAGA
GTGAATGAAAGAAGTATAAGGTTACGGAGTAAGTAGGGAGACGAG
Found at i:905617 original size:5 final size:5
Alignment explanation
Indices: 905607--905638 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
905597 GTAGTAAGAT
905607 AATAG AATAG AATAG AATAG AATAG AATAG AA
1 AATAG AATAG AATAG AATAG AATAG AATAG AA
905639 GGAAAAGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (5 bp):
AATAG
Left flanking sequence: Indices 905107 -- 905606
ACGAAAACGAACAAGGAAGCTCCTTATTCTCAAGTACTGGCATGTAACAAAAGATCAGTCAGATT
ACTGCCTTCCAGGCCTACTTTCTTCCAATGCATTCGTATTCCCGTAAGGAAGTGCTTTCTTTCTG
ACTTTCAGACTTCCTATCTCTGGTCTTTCTGTAACTGATAAAGAAATTAGTCTGGATCTTAGCGC
TAACTCCTACTAGCTTGATTCTCAATTTCCTCAAGCACAACAAGATAAATAGGAATCGAAGCCTG
ATCTAATGACTCCGGTTAAAAGTTCGGTCCCAAACTCTTTTTTTGAGTTACGGCTCAGAATATCC
ATAGGACGGAAGTCTGTACTTTTCGTACACAAAGGAAAGGTCGGTGGAAAAAGCTGACTAAGTCC
TCAAGCAGTAAACTCCTCGGAGCAGATGCGTCCAAGACTGCTACTTCTGACTCGCCTATGACGGA
TTTCCTGCTTCGCTTTGGAGTTACACTTGGATCCTGTAGTAAGAT
Right flanking sequence: Indices 905639 -- 906138
GGAAAAGGAATACGAATTCAATCCCTTCATCTACGGCTTATGGAGTAAAATAGAGGAGTAAGTGA
GAACAGCAACTTCCGAAGTCAGGCTTCAGGCTTCTTAGGTCGAATAAGGAGAGGTACAACTTCTC
TTGGTCTTAGCTTGCAGGTCTTCCCCCCTTCCTAGTTCAGGGAATTTGCCTGATCTTTGCTTTCA
ACGCAATTTCCCCTGTAAGTCAATAAATAGAAAGACTTGTTATCAAAGGTTCTTTTCTGTCTACA
GTCAGATAGATCTGATTTGCTGTCCGGCGAGTTAAAGACTGAAATTCATTAGCTCTTAGAACACT
CATCCAAACTGAATGAGAAATAGTTAAGGCATTTCGTCAGTCAGACTGACGTTTTTTCTCCGGGA
AAGTAACTAAAAGTACTGAAATAGAAAGATAATGACTGATTTGATCCTGCTTCTATGTCTCCAGC
AGGGATTGCAAATAGGTAGTCCCATACTTCATTCTATATATATCT
Found at i:910626 original size:19 final size:19
Alignment explanation
Indices: 910582--910633 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
910572 ACGTTGGACA
910582 AAAGACTACTATTATACTAG
1 AAAGACTACTATT-TACTAG
* *
910602 --ATACTACTATTTATTAG
1 AAAGACTACTATTTACTAG
910619 AAAGACTACTATTTA
1 AAAGACTACTATTTA
910634 AAGATAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 5 0.19
18 10 0.37
19 12 0.44
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (19 bp):
AAAGACTACTATTTACTAG
Left flanking sequence: Indices 910082 -- 910581
GGGTTACCCTGATGAATCAGAGAAGGTAGGAAAGAAAGGCCATTGAGAGTAAGAGAAGATCCTCA
GGCTATTCTCCATACGATTCCCATTAATCAGTTCCCAGTCCCTAGACGAAATCCATGCTCCCCTC
TTTCAACAGATCAGGCAGCAAGGAAAGCATCTAGTCACCCCCAAAACTATTGGAAGTCTGGTAGT
TCTCTTTCTAAGTTACAGCAGGTCTGGGAAGAATGAAATGACGTCTAATGAAAGATGATCCATTA
TCTAGCTCAGACTGTGCCTTTTGATAGAAGCCCGAAAAAGAGCTGAAAACTGCAAGTCAGATTTT
GATACAGCAGGAGGTTAGAAAGTCAAGTAAAGTTATTAAGTCACAAGGGTAAATATCAGAATATC
AGACTGACTGGCTTTAGAATAGAAGAGAATTATGAGGAATTAGATAGTTTATCCGACAAATCTCT
TACCCGAAAGCCGGGGAATAAAGGCAACAACAAAGACGTTGGACA
Right flanking sequence: Indices 910634 -- 911133
AAGATAAAGGAAAGCTAGAAGGTCAGGTCTAGTAGCCGTTGAGGAGATTGTTGATTCAGTAGCAG
TTGAGCGCTAGTCATTATAGTTATTAGATTGACTTACGATCCTAACCGGTGAAATAGGTAACCAG
ACTGAAGTTAGAAGCAAGCTGTATTCTCCCGGGGCTAGCTGTTAGTGTTAAAGTCTCATTACCTT
TGGTAGAGCTGCTAAAAAGCATCCTAAGATTGAGATGGCGAAGGTTCCAAGACCAGCGCATCCTA
TTTTTGATTCTTACCCGGAGTTGCAAGCATTGGAAGAAATGAAACTAACAAGGTTTGAAACTGCC
CGCCCTCTCGGAGGAAGTAGCAGTGTGATTAAATGCCTGCCTATTCTATAGTGTAGTTTGGCTTT
GATGTTTATCTTTCAGCGATAGAAGGGCTGGCTAGTCTAGTAGGTAAATTCCCGACTGAAGGGGA
GAGTGAAAAGATTGATCCTTCTATTTAGTTCTTACCACGCCCTTT
Found at i:911333 original size:32 final size:31
Alignment explanation
Indices: 911281--911340 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
911271 AAGAGTTAAA
*
911281 GAAGGAGAAGAGAAAAGAAAGAATGAATAAG
1 GAAGGAGAAGAGAAAAGAAAGAAAGAATAAG
**
911312 GAAGGAGAAAGAGAAGTGAAAGAAAGAAT
1 GAAGGAG-AAGAGAAAAGAAAGAAAGAAT
911341 TTTGAGGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (31 bp):
GAAGGAGAAGAGAAAAGAAAGAAAGAATAAG
Left flanking sequence: Indices 910781 -- 911280
GCTGTATTCTCCCGGGGCTAGCTGTTAGTGTTAAAGTCTCATTACCTTTGGTAGAGCTGCTAAAA
AGCATCCTAAGATTGAGATGGCGAAGGTTCCAAGACCAGCGCATCCTATTTTTGATTCTTACCCG
GAGTTGCAAGCATTGGAAGAAATGAAACTAACAAGGTTTGAAACTGCCCGCCCTCTCGGAGGAAG
TAGCAGTGTGATTAAATGCCTGCCTATTCTATAGTGTAGTTTGGCTTTGATGTTTATCTTTCAGC
GATAGAAGGGCTGGCTAGTCTAGTAGGTAAATTCCCGACTGAAGGGGAGAGTGAAAAGATTGATC
CTTCTATTTAGTTCTTACCACGCCCTTTGCTTCAGCCTAATCAGTCTAGCGCAAGGGATGGCATT
ACTAAACCCGACCATTCCACTATAAAACAAGACAAAAAACAACCTTCGGCCGAAAGATAAGATAA
GACAGATCAGCCGAGGAAAAGAAGGAGTTGAGGAAAAGAGTTAAA
Right flanking sequence: Indices 911341 -- 911840
TTTGAGGATTGACTGACAGTTCACTCTCATGAATCGATCGTCTTGACTTAAACATTACCTCGGCC
CAAAATACCGGGATTTGAATCAAAAAAATAAGGGAGAGATAGAAGGAATCTTTCGTCTTTCCTTA
CAGTTAAGTCGAATTGATTCTTCGATAGGATTCAATTCAACAAAGTCAGGCTTGACACCTTTTAT
ATAGCATCTTTCTCTCCCAACAAGTCTTTCTTCCTTCATTTTCACTAGCGCTTCCCGTAAAATCT
GTTGTTTTCTATTTCGACTCACAAGGCTAGGTCTGACACCCGAAAGAGTCTTTCACTTTACCTAT
CTTAACTGAGAGAAATCTAAACAGGCTATCACCGCTAATAGAAAAATTGCTTGACCCGGCTTACC
AATTCTATTAAAGAAAATGAAAGGGCTACTAAATACCTTTCGACAACTTACTAATGAACGAACCT
TGTTACTCTCCGGCGCCTGTTAAGGCTAGTTCTAATTTTCTCTTT
Found at i:928144 original size:13 final size:13
Alignment explanation
Indices: 928126--928152 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
928116 AGTAGGCCTT
928126 ACTGAGCTAATTC
1 ACTGAGCTAATTC
928139 ACTGAGCTAATTC
1 ACTGAGCTAATTC
928152 A
1 A
928153 GTAAGCTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (13 bp):
ACTGAGCTAATTC
Left flanking sequence: Indices 927626 -- 928125
TTGATTCCTTACCACCGGGGATTCATTCCACTATCCTCACTCTAGGAACATATTGAGGCTAAAGT
AGCCGCAGTCTTTGTCTTTGAGTAAGTTGCTATTGAGCTCAGCCCCTGGTAACATACTAAAGAAT
CATAAGAATCATATCCTGAGGACTAAAGAAAAGCTGCCTTGGAATCTCGAAACTTTGAAATAAAG
GCCTGTGAGAATTTCTTCTTTTAGAATAGAAGGAGATCTTTAGTGTATTCTCTGCAACCCTCACC
ACTTCGTCAGCAGGTGATAGATAACTGCTTTTTAGCTTTTTAAACCATCAGGACAGAATGCTTTT
AGCGGCAAATAGAACAAAGAAGCAGACAATATAACGCAATCTATCAATTGTTGAGCTAAACCAGC
CTTTTACCCTAAAGAAGATTTCCAACTAACTGGATTGAGGGATTTCTTGCTTTCCGGGGCCGCCC
TGATCTTCCCGACTGAACTCCTATAGACTCAAGAGAGTAGGCCTT
Right flanking sequence: Indices 928153 -- 928652
GTAAGCTATTCAAGCTCCTAGACCTCCGCCCAGTCCTGTCCTCAATAGATGACTTCCGCTTTCTC
TCGGAGATTAATCGATCTATCTTAGTTACGACCGGAGACAGATCGGGACGAGCTGCATCCTATTA
AGATTTATATCTTTTAGTTAGGGCGGAAAGCTACCTATCTTCTTCTGTCCTTATCTTCAATGCTA
AATTCCTGAAGTGACTTTGAAACATCAACATCATCAAATACGGCTACTGAAACTGCTACTTCCGA
ATCCCTGTGATGAACTGAAACGGAGTCTGATTCCACTTCTTTCCTTTAGCAACTAATGAATCTAT
CTATCTATTTGACTCTCTGGTTAGCTAGTGTCATTGTCCTTCTGCTTCTGACGAATTACCTAGGC
ATGTCAATGGACGAAGAAGAGCGAAAAGAAAAGAGAAGACATAGGGAATCAATAGGGAAATGAGT
GTAACGAATTAGGGATTCATTGAACTCATTCGGATGAAACCGAGA
Found at i:932743 original size:29 final size:29
Alignment explanation
Indices: 932701--932946 Score: 474
Period size: 29 Copynumber: 8.5 Consensus size: 29
932691 TTTACGAACC
**
932701 TCACTCCTCTCCCTACCGGTCTCGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932730 TCACTCCTCTCCCTACCGGTCGAGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932759 TCACTCCTCTCCCTACCGGTCGAGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932788 TCACTCCTCTCCCTACCGGTCGAGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932817 TCACTCCTCTCCCTACCGGTCGAGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932846 TCACTCCTCTCCCTACCGGTCGAGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932875 TCACTCCTCTCCCTACCGGTCGAGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932904 TCACTCCTCTCCCTACCGGTCGAGTGGTT
1 TCACTCCTCTCCCTACCGGTCGAGTGGTT
932933 TCACTCCTCTCCCT
1 TCACTCCTCTCCCT
932947 TTACTTACTG
Statistics
Matches: 215, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 215 1.00
ACGTcount: A:0.10, C:0.39, G:0.19, T:0.32
Consensus pattern (29 bp):
TCACTCCTCTCCCTACCGGTCGAGTGGTT
Left flanking sequence: Indices 932201 -- 932700
AATTTGTAAGTTAATCCTCAACTGCTTATTCATTCGACTGAACCTCTCCAACTGGGCTTGGCTGA
TCTGACCTCCGGAACTTATTGATTCAAAGACTAGGTAGTAACGCATATTCAATTAATTCGTTCTC
TTCTCGAGTTCGTTATTCAATCGGTAACTGTAAAGAAAGCAAAGACTGAAGATGGATTCTCCTTC
TTTCCCAAGGTCAAAGCCAAAGATCAAGCCGAAAACCCTCAACCCTCTCCCTTTCTTTGGTCTCG
CGTCTTCGACCCTCTCCTTTGTCGAGCGTCTTCGCCTCTTGGTCTCAGGGCTTCTAACCTTATTC
CTTCTTTCCCTCGGTAGTAAAGCAATTCAATTGCCTTTTCTTCCTTCTTTAACTCTCTTTGACTC
TCTTCCTCAGTACTTCCTCATTCAGCTTTTCCGATCGATATTACCTTCCCTTTACCTATTTATTC
ACTGTAACCAAAGACTGTCGATGAATGAGAGTTTGTTTACGAACC
Right flanking sequence: Indices 932947 -- 933446
TTACTTACTGTCTCGCTCTTTCACTCCTCTTCTTGAACGGTAACTAAGCCTAAAGATTAATGATC
TTGATTGTGAACTAAAGCTATTCCATTGCCTGAACTTCACTTCTCCCGGATTTCACTGTCAAAAA
AGAAGAAGAAAGATTAGAAGAAGACATATGGCCGGCCGGTCTCTCTCTCATCTCTTCTTTCCTGA
GCTTTCTTTAACTCCTTCCCCTTCAAAGACTCTTTCAGAAGGTCAAGCGCTATTTGATGAGAACC
AAAGATGATATTCCCTTTCAAAGACTGTAAACAAAGCCGAACCTCAACAAGATAAATTATCTATC
CCTCACCTTTCGATTCATTCGACTGAAGTCAGTCAGTCCTCTCCCTTACGGTCGAGCGCTTCGTC
CCTCTCCTCCCTCAACCCTGGCCGATTCTTATTGAAGGAGGTAAAGCAGCTGGGTGATAGATAGG
AACCTTCCCTTTTGACTCTATTCCGTAAGCTATTAACTGTAAACA
Found at i:938009 original size:12 final size:12
Alignment explanation
Indices: 937992--938016 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
937982 GAACGAACCT
937992 TCTTTCACTCAG
1 TCTTTCACTCAG
938004 TCTTTCACTCAG
1 TCTTTCACTCAG
938016 T
1 T
938017 AAAGCGGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.08, T:0.44
Consensus pattern (12 bp):
TCTTTCACTCAG
Left flanking sequence: Indices 937492 -- 937991
ATTTGATTTGCTCATGAACCCATATTACCTGAACTACGGAACCTAAACCTGAACCTGCCAAGGAA
AGACGAAAGAAGAATGATTTCACTCCTCTCCTTTCCAGTCTTCTGCCGCTTCGCCCCTTTTCCTA
TTTCTTCTTGACCTCGGTAAAGCTATTTGTTGAAGACCCTTTCTTTACAGTAAATTCCTAGTCTT
TATTAGATCAAACTGTCGAGCTGTGGAACCCGACGAAAAGAGAGAGATTCATTCGACTTAACTAC
TGACCCTGAACCTCTACAACTCGGTTTCACCATTTCATTTCCTGCCCCTGATTGAACGAGGTAAA
CTCATTAGCTACTGAACAGGAAAGTGTTGAAAGTCTCGACTCAAGCAAGACAAGAAAGAAAGAGT
AAACTCATTAGCTACTGAACCTGAAAGTCTTGAAAGGAAAGACGAAACGATTAATTCTTTCTCTT
CCCCTTCACCTTCCGATTCATGATCCCTCACTACTGAACGAACCT
Right flanking sequence: Indices 938017 -- 938516
AAAGCGGCTGTATGAGAATCAGGTCAAGCTCCGGAACCTCTATTACATTACCGGATTGAACTGTA
ATCTCCTGGACTATTAGCTCTGTAAATAGGTGTTAGCATCTTCCGTCCTGGACTGATTGAAGAAA
GATTAACGATCCAGAACTACTGAACGAACCAGATTGACCTCTTCCTCTTTTACTCGGAGGTCAGA
AAGGAAAGACTATCGATGAATGAGACGGAACCTTCTTTCACTTCTCTTGATCCTCTCCTGTAAGA
AAGATTAACGATCCAGAACTACTTCACTCCCTGATTTCACTCCTCTTCTCGTCTCGCTGATGAAT
AGATAGTGTTTACTTAAGTGCTGCGTGCGTCACTTTTTCTTCTTCTTCCCTCTCTCCTATTTATT
CTTGAACGAGGTAAATGGGTGAATGAAGTAGCTAATGTGACTCTCCTGTAACCCCGAAAGATGAG
AGAGAGTTGACTCCGGCCGGGGCCCCTATTGATTGATTCAGGATC
Found at i:939103 original size:71 final size:72
Alignment explanation
Indices: 938939--939106 Score: 185
Period size: 71 Copynumber: 2.3 Consensus size: 72
938929 TAAGGAAAGC
* * **
938939 AGCAAAAAGAAAAGAAATTCTATCTCCATATAACTGTCAAAGTTCGTAAGAGGTTTTTCCCTTAA
1 AGCAAAAAGAAAAGAAATTCTATCTCAATATAACTGTAAAAGTTCGTAAGACCTTTTTCCCTTAA
*
939004 TAGCAGC
66 TAGCAGA
* ** ** *****
939011 TGCTGAAATCAATTCTTTTCTATC-CAATATAACTGTAAAAGTTCGTAAGACCTTTTTCCCTTAA
1 AGCAAAAAGAAAAGAAATTCTATCTCAATATAACTGTAAAAGTTCGTAAGACCTTTTTCCCTTAA
*
939075 TAGCTGA
66 TAGCAGA
939082 AGCAAAAAGAAAAGAAATTCTATCT
1 AGCAAAAAGAAAAGAAATTCTATCT
939107 TTCCCGTGTT
Statistics
Matches: 69, Mismatches: 26, Indels: 2
0.71 0.27 0.02
Matches are distributed among these distances:
71 55 0.80
72 14 0.20
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (72 bp):
AGCAAAAAGAAAAGAAATTCTATCTCAATATAACTGTAAAAGTTCGTAAGACCTTTTTCCCTTAA
TAGCAGA
Left flanking sequence: Indices 938439 -- 938938
TAATGTGACTCTCCTGTAACCCCGAAAGATGAGAGAGAGTTGACTCCGGCCGGGGCCCCTATTGA
TTGATTCAGGATCCTTCCCCGGTATTCCCTTCAAAAGAAAGTTCAGACTCTCTACTCCTTATTCA
TTAGACTGATTTCACTCTTACACTCGGTAAGTCACTGTATGATCGTAAGGTCAAGCTCCTTCCCT
TCTATTCCCTTTGCTTGCTACTGACCCTCGGCCAGCTTCTTTCTCTTCTCTTTCTCCTCTGACTC
ATGAACCGGAACCTGATTTCATTCCTTTACCTCGGGTTCCTCTTTCTTTATTCTTGAACAGTAAA
CAAAAGATTGGATCTGAGAAGATTATTATACTAAATAACCAGTGTGCAGTTCTTGAATTAAGGAA
AGACGAAAGAAGGGCAACTCCTACTTCTGGAACTCTGCCGGACCAAGAATGAATTTCTTCTATCC
TATATAGGGGTAAAACATTAAAAGAGGTTTTTCCCTAAGGAAAGC
Right flanking sequence: Indices 939107 -- 939606
TTCCCGTGTTTTTGGGTATAAAAGAGTCCATTTTCCCCTATTTCCCTCGGTAACGAGACTGTAAA
CACTCAAAAAACTAGATCAAAGTCTATCTTTCCCGTGTTTTTGGGTATAAAAGTCTATCTTTCCC
CTATTTTTCGGGATCAAATTGATGCTTTGAGGGCCGAGGTAATGTTGAAGTCAATCCTTCAGATG
AATGAGACTGAACTCTCAGTAAATCCTCAAGATGAATGAAAGAGTAAACACTCCTTATTCATTCG
TCATCGTGAACTGGAAGGAAAGACTATCGATTCCTTCTTGATCTTGATCTTCCCCTTCAAGTCTT
TCAAGTCTGAACTCTCGATTCATTCTTTCTTTTCTCTGATCCTTCTTTCACTGATCTTTCTCATT
CACCTGTCGGTTGAACAATTCCCTTCCTCCTTCCCCTGCCCCTCTATCTTGTTGATTTACTCGAC
TGTAAGTAAGAAAGAAAGATGAATGAGACTGATTCGCCTCTCCCT
Found at i:940109 original size:31 final size:31
Alignment explanation
Indices: 940042--940110 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
940032 AAAAAAACAA
*
940042 GATCAAAGTCTATCTTTCCCGTATTTTGAGG
1 GATCAAAGTCTATCTTACCCGTATTTTGAGG
* * **
940073 TATCAAAGTCTATCTTGACCC-TCTTTTTCGG
1 GATCAAAGTCTATCTT-ACCCGTATTTTGAGG
940104 GATCAAA
1 GATCAAA
940111 TCGAGGTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
GATCAAAGTCTATCTTACCCGTATTTTGAGG
Left flanking sequence: Indices 939542 -- 940041
ATCTTGTTGATTTACTCGACTGTAAGTAAGAAAGAAAGATGAATGAGACTGATTCGCCTCTCCCT
ATTGATTCGTTCATTTTACTAGGGTTGAACTAAACTAGGTAAGCTGGATGAGAAGAGGGTAAAGC
GACTGAACTGTCAGGAAAGACTATCGATGAATGAGAGCATATGAAATCCGATTCCTTCATTCTCC
TTCACAGTCAGGAAAGAGGTAAACTCCGGAACTACTGAACCTGAAAGTGTTGAAAGGAAAGCCGC
TGAAAGAAAATCTTTTCTATCCTATATAGGGGTCAAAGTTCGTAATCGGTTTTTCACTAATAGCT
GCAGCAAAAAGAAATTATTTTCTATCTTTCCCGTGTTTTTGGGGTATTTCCCTTTTTCCCTTAAT
AGCGGGAGCTTCAAGAAATTATTTTCTATCTTTCCCGTGTTTTTGGGTATAAAATCGTCCATTTG
ACCCTATTTCCCTCGGTAACTCAACTGTAAACACGAAAAAAACAA
Right flanking sequence: Indices 940111 -- 940610
TCGAGGTATTTAGGGCCAGGGTAATGTTTCAGTAGAAGTCAAGACGAAAGAAGAATCAATGATCC
TTCACTCTCAGGAAAGACTATCGAAGAATCAATTCGACTTCACTGTAAGGAAAGACGAAAGATTC
CTTCTTTCACTCTTGAACTCGGTCTCGCTCTTTCACTCCTTTTATTCAGTCTCCTTCACCGGACT
ATTTATTACTTCTGTCTGTGCCTTCTTTCCTTTCCCTCTTTTACTCTCTCCTGCCTGTAAGAAGG
ATGATTTCTCCTTAACTCACTTGTCCCTATTTAATTTATTCTCTTACTTTCTTTCTTTCTTTCTT
TCACTGGGTAAAGCCTTTCTCTCTCCTTTACTGGCTTGCTTGAACTCAAACACTCCTTTTATTCT
GTCTCCTTAACTACTGAACTTGTCCCTTCTTTCCCTCTTTTTCGTGTAAGGATCAATTATTTATT
ATTTAATGGATGCTTTACGACTGTCAAGTTTCAGAATTCAGAAGG
Found at i:971001 original size:30 final size:30
Alignment explanation
Indices: 970965--971021 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
970955 AAGAAGGTGA
970965 AGGCAATGGAATTGTGAAACCGATAGGGGC
1 AGGCAATGGAATTGTGAAACCGATAGGGGC
970995 AGGCAATGGAATTGTGAAACCGATAGG
1 AGGCAATGGAATTGTGAAACCGATAGG
971022 TGAATGAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.35, T:0.18
Consensus pattern (30 bp):
AGGCAATGGAATTGTGAAACCGATAGGGGC
Left flanking sequence: Indices 970465 -- 970964
TCTGTAAAGATCTCGATGACCCTGAATGAGAGAGAAGTGGGTTTTTTTACGGTCTTGGCCTGAGT
GATCTCGGAAACTGAAAGCTTTTCGACTGAAAAGTGACCCATTAGGTCAGTAGCAGCCTGACGAG
CTGGGATAAGTAGGTAGCTGATAGACCAAATAAGCACAGTAGCAGTTTAGAGCCGAGTAAATGAA
TTAGCCTATTTACCAAGTTCAAGAATAAATAAATAGGGACAAGCAAGAAGGTGAAGGAGAATGAA
TAAGGAAGGAGTAGTTATCTTTTACAGTGAAACCCGAGTTCAATGACAGAATAAATAGGGGGAGG
AGTGAACGAGAATGAATAAGGAGCTCAAGCAGTGAGACCGAGTTTACGAGGCGAACGAGCTTCGG
CAGTGAGACCAAAGGGAGAGGAGTTCAGACTGACTGTGAAGGAGAATGAATAAGGAAAGGAGTCT
TTCTCTTTTTCTTTTACCGGAGCAACTCTTTGTGAAAGAAGGTGA
Right flanking sequence: Indices 971022 -- 971521
TGAATGAGTTTACCTCGTTCAAGAAGGAAAAGGTTTAAGGTTGAGGGACGAAGTGCGAGACCGTA
AGGGAAAGGGACGAAGTGCGAGACCGTAAGGGAGAGGATTGACTTATGAATTACCTTTACTGGAT
TTGATCCCAAAAAATAGACAGAGGATAGCTTTTCTTTATTGATGGTATTTAAAGGAAAAAGGGTT
CAATCAGTCCCATTTAGCCGATTTGGAACTCTTTTACAGGGAAATCAGGGATTTTGACCTCAAAT
ACCTCAAAAATAGCCCAAAAAATCAGGGAAGGATAGCATTTTATCCAAAAAAATAGACAGAGGAT
AGGAAAATAGAATGAAAGGTCTTTACACTCAAAAATAGGGATTTGATCCCAAAAAATCAGGGAAG
GATAGCTTTGATTTCTTTATGGTCTTTAAAGGAAAAAGAGTCTTTGAAGGTTCAGAGAAAGAATG
AATTGAGAGTATTGATCTTTTACAGTGAATAAATAGGGGAAGGTC
Found at i:971089 original size:28 final size:28
Alignment explanation
Indices: 971065--971119 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
971055 TTTAAGGTTG
971065 AGGGACGAAGTGCGAGACCGTAAGGGAA
1 AGGGACGAAGTGCGAGACCGTAAGGGAA
971093 AGGGACGAAGTGCGAGACCGTAAGGGA
1 AGGGACGAAGTGCGAGACCGTAAGGGA
971120 GAGGATTGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.44, T:0.07
Consensus pattern (28 bp):
AGGGACGAAGTGCGAGACCGTAAGGGAA
Left flanking sequence: Indices 970565 -- 971064
GACCCATTAGGTCAGTAGCAGCCTGACGAGCTGGGATAAGTAGGTAGCTGATAGACCAAATAAGC
ACAGTAGCAGTTTAGAGCCGAGTAAATGAATTAGCCTATTTACCAAGTTCAAGAATAAATAAATA
GGGACAAGCAAGAAGGTGAAGGAGAATGAATAAGGAAGGAGTAGTTATCTTTTACAGTGAAACCC
GAGTTCAATGACAGAATAAATAGGGGGAGGAGTGAACGAGAATGAATAAGGAGCTCAAGCAGTGA
GACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTGAGACCAAAGGGAGAGGAGTTCAGACTGACT
GTGAAGGAGAATGAATAAGGAAAGGAGTCTTTCTCTTTTTCTTTTACCGGAGCAACTCTTTGTGA
AAGAAGGTGAAGGCAATGGAATTGTGAAACCGATAGGGGCAGGCAATGGAATTGTGAAACCGATA
GGTGAATGAGTTTACCTCGTTCAAGAAGGAAAAGGTTTAAGGTTG
Right flanking sequence: Indices 971120 -- 971619
GAGGATTGACTTATGAATTACCTTTACTGGATTTGATCCCAAAAAATAGACAGAGGATAGCTTTT
CTTTATTGATGGTATTTAAAGGAAAAAGGGTTCAATCAGTCCCATTTAGCCGATTTGGAACTCTT
TTACAGGGAAATCAGGGATTTTGACCTCAAATACCTCAAAAATAGCCCAAAAAATCAGGGAAGGA
TAGCATTTTATCCAAAAAAATAGACAGAGGATAGGAAAATAGAATGAAAGGTCTTTACACTCAAA
AATAGGGATTTGATCCCAAAAAATCAGGGAAGGATAGCTTTGATTTCTTTATGGTCTTTAAAGGA
AAAAGAGTCTTTGAAGGTTCAGAGAAAGAATGAATTGAGAGTATTGATCTTTTACAGTGAATAAA
TAGGGGAAGGTCAAGTAGTTCAGCGAACATCCTTTCAGTAGTTCAGGGGTTTACCGAGTTCAAGC
AAGAAGCCGCAAGTGATTGACTTCCTTATTACTACTTCTAAAATG
Found at i:971793 original size:31 final size:31
Alignment explanation
Indices: 971758--971975 Score: 162
Period size: 31 Copynumber: 7.0 Consensus size: 31
971748 CCTTGACTCT
971758 CTTTTATCCCCAAAAATAGGGTAAAGATAGA
1 CTTTTATCCCCAAAAATAGGGTAAAGATAGA
** * *
971789 CTTTTTAAT-CAAAAAAATAAGGG-AGAGATACA
1 C-TTTT-ATCCCCAAAAAT-AGGGTAAAGATAGA
* **
971821 CTTTTAGCCCCAAAAATAGGGTAAAGCAT-CT
1 CTTTTATCCCCAAAAATAGGGTAAAG-ATAGA
* ** *
971852 CTTTTATCCCAAAAAATA-GACAGAGGATAGA
1 CTTTTATCCCCAAAAATAGGGTA-AAGATAGA
* *
971883 CTTTGATCCCCAAAAATAGGGTAAAGCATCGA
1 CTTTTATCCCCAAAAATAGGGTAAAG-ATAGA
* * *
971915 -TTTGATCCCCCAAAATAGGGTAAAGCATCGA
1 CTTTTATCCCCAAAAATAGGGTAAAG-ATAGA
*
971946 -TTTGATCCCCAAAAATACGGG-AAAGATAGA
1 CTTTTATCCCCAAAAATA-GGGTAAAGATAGA
971976 ATTTCTTTTC
Statistics
Matches: 151, Mismatches: 25, Indels: 23
0.76 0.13 0.12
Matches are distributed among these distances:
30 13 0.09
31 102 0.68
32 30 0.20
33 6 0.04
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (31 bp):
CTTTTATCCCCAAAAATAGGGTAAAGATAGA
Left flanking sequence: Indices 971258 -- 971757
AAATCAGGGATTTTGACCTCAAATACCTCAAAAATAGCCCAAAAAATCAGGGAAGGATAGCATTT
TATCCAAAAAAATAGACAGAGGATAGGAAAATAGAATGAAAGGTCTTTACACTCAAAAATAGGGA
TTTGATCCCAAAAAATCAGGGAAGGATAGCTTTGATTTCTTTATGGTCTTTAAAGGAAAAAGAGT
CTTTGAAGGTTCAGAGAAAGAATGAATTGAGAGTATTGATCTTTTACAGTGAATAAATAGGGGAA
GGTCAAGTAGTTCAGCGAACATCCTTTCAGTAGTTCAGGGGTTTACCGAGTTCAAGCAAGAAGCC
GCAAGTGATTGACTTCCTTATTACTACTTCTAAAATGGACCTCAAAATAGGGCATCAATTTGAAT
CAAAAAAATAAGGGAGAGATAGAATGAATCTTGAGGATTTACTGACAGTTCACTCTCATGTTGAG
TTTCGTTTCGTCTTTCCTTAATAATGAATGAATTACCTTGACTCT
Right flanking sequence: Indices 971976 -- 972475
ATTTCTTTTCTTTCAGCAGCTTTCCTTAGGGAAAAAGGTCTTACGAACTTTTACCCCTATGTTGG
ATAGAATTTCTTTTCTTTCAGCGGCTGCTATTAGGGAAAAACCTCTTTTAATGTTTTACCCCTAT
GCTGGATACAAAATCTTTTCTTTCCTATGCAGCTATTAGGGAAAAAGCTCTTTTAATGTTTTACC
CCTATGCTGGATACAAAAGATTTTCTTTCAGCGGCTCGACTGTAAAGGAGAGGATCAGCAATGGA
ATTGTGAGACCAATATAATGGGTTCAGGGGAAGGGAATAGAGAAAGATACCCGGTTATAGGTTTA
AAGATTAGAGAGTCGTGCTCCACACCTTTATGTATAAACCATTCCGGCCGGAGTCTCCCTATACC
AAACCGACTCGCCTTCAACTCAATCAATGAAAAGATATCTGAGTTAGGTTTAAAGATTGATATCA
GACAATGATTCGATATTTGAGTTTACACAATCGAATGAAAAGATA
Found at i:971894 original size:62 final size:61
Alignment explanation
Indices: 971758--971912 Score: 181
Period size: 62 Copynumber: 2.5 Consensus size: 61
971748 CCTTGACTCT
**
971758 CTTTTATCCCCAAAAATAGGGTAAAG-ATAGACTTTTTAATCAAAAAAATAAGGGAGAGATACA
1 CTTTTATCCCCAAAAATAGGGTAAAGCAT---CTTTTTAATCAAAAAAATAACAGAGAGATACA
* * *
971821 CTTTTAGCCCCAAAAATAGGGTAAAGCATCTCTTTT-ATCCCAAAAAATAGACAGAG-GATAGA
1 CTTTTATCCCCAAAAATAGGGTAAAGCATCT-TTTTAAT-CAAAAAAATA-ACAGAGAGATACA
*
971883 CTTTGATCCCCAAAAATAGGGTAAAGCATC
1 CTTTTATCCCCAAAAATAGGGTAAAGCATC
971913 GATTTGATCC
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
61 4 0.05
62 46 0.57
63 29 0.36
64 2 0.02
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25
Consensus pattern (61 bp):
CTTTTATCCCCAAAAATAGGGTAAAGCATCTTTTTAATCAAAAAAATAACAGAGAGATACA
Left flanking sequence: Indices 971258 -- 971757
AAATCAGGGATTTTGACCTCAAATACCTCAAAAATAGCCCAAAAAATCAGGGAAGGATAGCATTT
TATCCAAAAAAATAGACAGAGGATAGGAAAATAGAATGAAAGGTCTTTACACTCAAAAATAGGGA
TTTGATCCCAAAAAATCAGGGAAGGATAGCTTTGATTTCTTTATGGTCTTTAAAGGAAAAAGAGT
CTTTGAAGGTTCAGAGAAAGAATGAATTGAGAGTATTGATCTTTTACAGTGAATAAATAGGGGAA
GGTCAAGTAGTTCAGCGAACATCCTTTCAGTAGTTCAGGGGTTTACCGAGTTCAAGCAAGAAGCC
GCAAGTGATTGACTTCCTTATTACTACTTCTAAAATGGACCTCAAAATAGGGCATCAATTTGAAT
CAAAAAAATAAGGGAGAGATAGAATGAATCTTGAGGATTTACTGACAGTTCACTCTCATGTTGAG
TTTCGTTTCGTCTTTCCTTAATAATGAATGAATTACCTTGACTCT
Right flanking sequence: Indices 971913 -- 972412
GATTTGATCCCCCAAAATAGGGTAAAGCATCGATTTGATCCCCAAAAATACGGGAAAGATAGAAT
TTCTTTTCTTTCAGCAGCTTTCCTTAGGGAAAAAGGTCTTACGAACTTTTACCCCTATGTTGGAT
AGAATTTCTTTTCTTTCAGCGGCTGCTATTAGGGAAAAACCTCTTTTAATGTTTTACCCCTATGC
TGGATACAAAATCTTTTCTTTCCTATGCAGCTATTAGGGAAAAAGCTCTTTTAATGTTTTACCCC
TATGCTGGATACAAAAGATTTTCTTTCAGCGGCTCGACTGTAAAGGAGAGGATCAGCAATGGAAT
TGTGAGACCAATATAATGGGTTCAGGGGAAGGGAATAGAGAAAGATACCCGGTTATAGGTTTAAA
GATTAGAGAGTCGTGCTCCACACCTTTATGTATAAACCATTCCGGCCGGAGTCTCCCTATACCAA
ACCGACTCGCCTTCAACTCAATCAATGAAAAGATATCTGAGTTAG
Found at i:972098 original size:70 final size:70
Alignment explanation
Indices: 972024--972206 Score: 258
Period size: 70 Copynumber: 2.6 Consensus size: 70
972014 TCTTACGAAC
* * ** *
972024 TTTTACCCCTATGTTGGATAGAATTTCTTTTCTTTCAGCGGCTGCTATTAGGGAAAAACCTCTTT
1 TTTTACCCCTATGCTGGATACAAAATCTTTTCTTTCAGCGGCTGCTATTAGGGAAAAAGCTCTTT
972089 TAATG
66 TAATG
**** *
972094 TTTTACCCCTATGCTGGATACAAAATCTTTTCTTTCCTATGCAGCTATTAGGGAAAAAGCTCTTT
1 TTTTACCCCTATGCTGGATACAAAATCTTTTCTTTCAGCGGCTGCTATTAGGGAAAAAGCTCTTT
972159 TAATG
66 TAATG
**
972164 TTTTACCCCTATGCTGGATACAAAAGATTTTCTTTCAGCGGCT
1 TTTTACCCCTATGCTGGATACAAAATCTTTTCTTTCAGCGGCT
972207 CGACTGTAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
70 96 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (70 bp):
TTTTACCCCTATGCTGGATACAAAATCTTTTCTTTCAGCGGCTGCTATTAGGGAAAAAGCTCTTT
TAATG
Left flanking sequence: Indices 971524 -- 972023
GTAGTTCAGCGAACATCCTTTCAGTAGTTCAGGGGTTTACCGAGTTCAAGCAAGAAGCCGCAAGT
GATTGACTTCCTTATTACTACTTCTAAAATGGACCTCAAAATAGGGCATCAATTTGAATCAAAAA
AATAAGGGAGAGATAGAATGAATCTTGAGGATTTACTGACAGTTCACTCTCATGTTGAGTTTCGT
TTCGTCTTTCCTTAATAATGAATGAATTACCTTGACTCTCTTTTATCCCCAAAAATAGGGTAAAG
ATAGACTTTTTAATCAAAAAAATAAGGGAGAGATACACTTTTAGCCCCAAAAATAGGGTAAAGCA
TCTCTTTTATCCCAAAAAATAGACAGAGGATAGACTTTGATCCCCAAAAATAGGGTAAAGCATCG
ATTTGATCCCCCAAAATAGGGTAAAGCATCGATTTGATCCCCAAAAATACGGGAAAGATAGAATT
TCTTTTCTTTCAGCAGCTTTCCTTAGGGAAAAAGGTCTTACGAAC
Right flanking sequence: Indices 972207 -- 972706
CGACTGTAAAGGAGAGGATCAGCAATGGAATTGTGAGACCAATATAATGGGTTCAGGGGAAGGGA
ATAGAGAAAGATACCCGGTTATAGGTTTAAAGATTAGAGAGTCGTGCTCCACACCTTTATGTATA
AACCATTCCGGCCGGAGTCTCCCTATACCAAACCGACTCGCCTTCAACTCAATCAATGAAAAGAT
ATCTGAGTTAGGTTTAAAGATTGATATCAGACAATGATTCGATATTTGAGTTTACACAATCGAAT
GAAAAGATATGAGTTTACACAATTCCCTCCCTCCTTTACCTCTGACGGGAGTGTTTGTGCTTCCC
GAGGAAAAGCTGTACCTATTATTATAATGTCTCTGAAAAAGCTGTACCTATTAGAATGGCTCTGA
AAAGCTAGCTGTACCTATTCTATAGCTGTACCTATTCTATACCTTTACCTATTCTATACATACTA
CGGGTGGTGAGAGGCAGGCAGCCCTCGTAGCTCGATTGCTAAACA
Found at i:972607 original size:32 final size:29
Alignment explanation
Indices: 972536--972615 Score: 88
Period size: 32 Copynumber: 2.6 Consensus size: 29
972526 CTTCCCGAGG
* *
972536 AAAAGCTGTACCTATTATTATAATGTCTCTGA
1 AAAAGCTGTACC---TATTAGAATGGCTCTGA
972568 AAAAGCTGTACCTATTAGAATGGCTCTGA
1 AAAAGCTGTACCTATTAGAATGGCTCTGA
972597 AAAGCTAGCTGTACCTATT
1 AAA---AGCTGTACCTATT
972616 CTATAGCTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
29 18 0.42
32 25 0.58
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (29 bp):
AAAAGCTGTACCTATTAGAATGGCTCTGA
Left flanking sequence: Indices 972036 -- 972535
GTTGGATAGAATTTCTTTTCTTTCAGCGGCTGCTATTAGGGAAAAACCTCTTTTAATGTTTTACC
CCTATGCTGGATACAAAATCTTTTCTTTCCTATGCAGCTATTAGGGAAAAAGCTCTTTTAATGTT
TTACCCCTATGCTGGATACAAAAGATTTTCTTTCAGCGGCTCGACTGTAAAGGAGAGGATCAGCA
ATGGAATTGTGAGACCAATATAATGGGTTCAGGGGAAGGGAATAGAGAAAGATACCCGGTTATAG
GTTTAAAGATTAGAGAGTCGTGCTCCACACCTTTATGTATAAACCATTCCGGCCGGAGTCTCCCT
ATACCAAACCGACTCGCCTTCAACTCAATCAATGAAAAGATATCTGAGTTAGGTTTAAAGATTGA
TATCAGACAATGATTCGATATTTGAGTTTACACAATCGAATGAAAAGATATGAGTTTACACAATT
CCCTCCCTCCTTTACCTCTGACGGGAGTGTTTGTGCTTCCCGAGG
Right flanking sequence: Indices 972616 -- 973115
CTATAGCTGTACCTATTCTATACCTTTACCTATTCTATACATACTACGGGTGGTGAGAGGCAGGC
AGCCCTCGTAGCTCGATTGCTAAACAGGCGGTTTTCCGGGGGGAGTGGGCCTAGGAGGTCTCCAA
CGAAAAATCAATGTGTAAATTAATATGATGCAATAGTACGGTGCTTTTCCCTCTAAGCTGGAACG
ACGGCTGGCGGATTTCTTTCTGTCTGGGATGATTTAGTCAGGGCAAAGGATGAATCCGAGGTATA
TTAAGGTTCGGTATTTGACTCCGGGGACTACGTGATCTATTGTCTCTATTCTCTATTGGGTACTT
TTTCTTTCTTTCGGCCCTGACACCCTTTCTTCTCCTCCCTCAGCCTGACTTCGCCCTCTCTCTCT
TTCTTGTTGACAGTTCAATCCGAGTTGGTTACAGGGGAAAGCATGTAAAGGAAAAGTGAAATGGT
AGCTACTTTTTCCCTTTCTGGTCGGTCTGGTGTGGTGTCATTGAC
Found at i:972624 original size:17 final size:17
Alignment explanation
Indices: 972602--972654 Score: 88
Period size: 17 Copynumber: 3.1 Consensus size: 17
972592 TCTGAAAAGC
972602 TAGCTGTACCTATTCTA
1 TAGCTGTACCTATTCTA
972619 TAGCTGTACCTATTCTA
1 TAGCTGTACCTATTCTA
* *
972636 TACCTTTACCTATTCTA
1 TAGCTGTACCTATTCTA
972653 TA
1 TA
972655 CATACTACGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.43
Consensus pattern (17 bp):
TAGCTGTACCTATTCTA
Left flanking sequence: Indices 972102 -- 972601
CTATGCTGGATACAAAATCTTTTCTTTCCTATGCAGCTATTAGGGAAAAAGCTCTTTTAATGTTT
TACCCCTATGCTGGATACAAAAGATTTTCTTTCAGCGGCTCGACTGTAAAGGAGAGGATCAGCAA
TGGAATTGTGAGACCAATATAATGGGTTCAGGGGAAGGGAATAGAGAAAGATACCCGGTTATAGG
TTTAAAGATTAGAGAGTCGTGCTCCACACCTTTATGTATAAACCATTCCGGCCGGAGTCTCCCTA
TACCAAACCGACTCGCCTTCAACTCAATCAATGAAAAGATATCTGAGTTAGGTTTAAAGATTGAT
ATCAGACAATGATTCGATATTTGAGTTTACACAATCGAATGAAAAGATATGAGTTTACACAATTC
CCTCCCTCCTTTACCTCTGACGGGAGTGTTTGTGCTTCCCGAGGAAAAGCTGTACCTATTATTAT
AATGTCTCTGAAAAAGCTGTACCTATTAGAATGGCTCTGAAAAGC
Right flanking sequence: Indices 972655 -- 973154
CATACTACGGGTGGTGAGAGGCAGGCAGCCCTCGTAGCTCGATTGCTAAACAGGCGGTTTTCCGG
GGGGAGTGGGCCTAGGAGGTCTCCAACGAAAAATCAATGTGTAAATTAATATGATGCAATAGTAC
GGTGCTTTTCCCTCTAAGCTGGAACGACGGCTGGCGGATTTCTTTCTGTCTGGGATGATTTAGTC
AGGGCAAAGGATGAATCCGAGGTATATTAAGGTTCGGTATTTGACTCCGGGGACTACGTGATCTA
TTGTCTCTATTCTCTATTGGGTACTTTTTCTTTCTTTCGGCCCTGACACCCTTTCTTCTCCTCCC
TCAGCCTGACTTCGCCCTCTCTCTCTTTCTTGTTGACAGTTCAATCCGAGTTGGTTACAGGGGAA
AGCATGTAAAGGAAAAGTGAAATGGTAGCTACTTTTTCCCTTTCTGGTCGGTCTGGTGTGGTGTC
ATTGACTGAATTTCTCTTCACATCCCTCCGAATCTCTACTCTGTT
Done.