Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_014050
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 982833
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
File 2 of 3
Found at i:494304 original size:38 final size:38
Alignment explanation
Indices: 494260--494342 Score: 148
Period size: 38 Copynumber: 2.2 Consensus size: 38
494250 CTTTCTTTCG
*
494260 TTGCTTCACTCATTCGCCTCTACACCTGAGCGGGCTCA
1 TTGCTTCACTCATTCGCCTCTACACCTGAGCAGGCTCA
*
494298 TTGCTTCACTCATTCGCCTCTACACCTGAGCAGGTTCA
1 TTGCTTCACTCATTCGCCTCTACACCTGAGCAGGCTCA
494336 TTGCTTC
1 TTGCTTC
494343 GCTCTTCTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.16, C:0.35, G:0.17, T:0.33
Consensus pattern (38 bp):
TTGCTTCACTCATTCGCCTCTACACCTGAGCAGGCTCA
Left flanking sequence: Indices 493760 -- 494259
CCTCGTAAACTCAGTTGAACAGCTTCGCTCCGTCACCTTTCTTTACAGGAAAGAAGTCTAAACTC
CTTATTCCTGAACCTTACCCTGATTGCCCGAGGTAATTAAGAGGGAAAGACGAAAGCGCAAACTC
AAGCTATTTTCAGAACCTTGCCAGGAGGGAGAGTCAGTCAATTCATTCAATCCTGCCGAGTCGAA
TCAATGAATTAGCTGCTTTCTTTCGCTCGGTGAATAAGAATCAATCCTGAACCTTACCCTGATTG
CCCGAGGTAACTAGGTGTTAAAGCATCTTCTGTCCTGTCCTTTCTTTCCAGTCGAGTCGAGCTAC
TTACTCCTTCCCCTTTTGAATTGAATGAACTCCCTCACCTTCTCTCACGCACGATCACGATGAAG
GATCCTTCTGTCCTGTCCCTCTGGGTTTTTTCTTTCGTTTGCTTCGCTAATGAGCTTATTGTGTG
TCTCATTGCTTCTCTCGTCTTCTTCTTTACCGTTTCTTTCTTTCG
Right flanking sequence: Indices 494343 -- 494842
GCTCTTCTCCCTCTGGGTTTCTCGTTGCTTCGCTCATTCGTTGTGTGTCTGACATTGCTTGGCTC
CTTTGCTCTTCGAGTCTCGCTGCTTTGCCCCTTTACCTTCAACCACCCGGTAAATGGAATAGTTG
TTTGATTGAACTCGGTCTCTTCTCTTGTCTTTCCGATTCTTTCTTAGAGGTAAAGCGAATAACCT
TTCTTTCCTCTCTCTCCTATTTATTCTTGAACAAAGATAGGAGTCAGTCATCATTTCTTTGTCTC
GAGCTTCTTTCAGGAGGTAAAGCAATTCAATTGCCTGAACCTTCTTTATCTTTGTCCTCTCCCTC
TTTACTTACTTATTCAACCTTTCCTGACTCAATTACCTTCCCTGAACCTAGTTAGAAACTCTTAG
TTTACCTGACTCGAATCTGATCTTCTCTGATTTAAGGCCGAAACTGAAATATCATATATAATCAT
AGCAGCTCATCTTGACAGCTTCCATTTGATATTGAGAAAGCGGCG
Found at i:494356 original size:38 final size:38
Alignment explanation
Indices: 494260--494356 Score: 133
Period size: 38 Copynumber: 2.6 Consensus size: 38
494250 CTTTCTTTCG
* *
494260 TTGCTTCACTCATTCGCCTCTACACCTGAGCGGGCTCA
1 TTGCTTCACTCATTCCCCTCTACACCTGAGCAGGCTCA
* *
494298 TTGCTTCACTCATTCGCCTCTACACCTGAGCAGGTTCA
1 TTGCTTCACTCATTCCCCTCTACACCTGAGCAGGCTCA
*
494336 TTGCTTCGCTC-TTCTCCCTCT
1 TTGCTTCACTCATTC-CCCTCT
494357 GGGTTTCTCG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 3 0.06
38 51 0.94
ACGTcount: A:0.13, C:0.37, G:0.15, T:0.34
Consensus pattern (38 bp):
TTGCTTCACTCATTCCCCTCTACACCTGAGCAGGCTCA
Left flanking sequence: Indices 493760 -- 494259
CCTCGTAAACTCAGTTGAACAGCTTCGCTCCGTCACCTTTCTTTACAGGAAAGAAGTCTAAACTC
CTTATTCCTGAACCTTACCCTGATTGCCCGAGGTAATTAAGAGGGAAAGACGAAAGCGCAAACTC
AAGCTATTTTCAGAACCTTGCCAGGAGGGAGAGTCAGTCAATTCATTCAATCCTGCCGAGTCGAA
TCAATGAATTAGCTGCTTTCTTTCGCTCGGTGAATAAGAATCAATCCTGAACCTTACCCTGATTG
CCCGAGGTAACTAGGTGTTAAAGCATCTTCTGTCCTGTCCTTTCTTTCCAGTCGAGTCGAGCTAC
TTACTCCTTCCCCTTTTGAATTGAATGAACTCCCTCACCTTCTCTCACGCACGATCACGATGAAG
GATCCTTCTGTCCTGTCCCTCTGGGTTTTTTCTTTCGTTTGCTTCGCTAATGAGCTTATTGTGTG
TCTCATTGCTTCTCTCGTCTTCTTCTTTACCGTTTCTTTCTTTCG
Right flanking sequence: Indices 494357 -- 494856
GGGTTTCTCGTTGCTTCGCTCATTCGTTGTGTGTCTGACATTGCTTGGCTCCTTTGCTCTTCGAG
TCTCGCTGCTTTGCCCCTTTACCTTCAACCACCCGGTAAATGGAATAGTTGTTTGATTGAACTCG
GTCTCTTCTCTTGTCTTTCCGATTCTTTCTTAGAGGTAAAGCGAATAACCTTTCTTTCCTCTCTC
TCCTATTTATTCTTGAACAAAGATAGGAGTCAGTCATCATTTCTTTGTCTCGAGCTTCTTTCAGG
AGGTAAAGCAATTCAATTGCCTGAACCTTCTTTATCTTTGTCCTCTCCCTCTTTACTTACTTATT
CAACCTTTCCTGACTCAATTACCTTCCCTGAACCTAGTTAGAAACTCTTAGTTTACCTGACTCGA
ATCTGATCTTCTCTGATTTAAGGCCGAAACTGAAATATCATATATAATCATAGCAGCTCATCTTG
ACAGCTTCCATTTGATATTGAGAAAGCGGCGGGCCTCAATGAACT
Found at i:510056 original size:22 final size:22
Alignment explanation
Indices: 510021--510064 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
510011 GACTGCCTTA
*
510021 GTGCAAGAAATACCTGAAATGG
1 GTGCAAGAAATACCAGAAATGG
* *
510043 GTGCACGAACTACCAGAAATGG
1 GTGCAAGAAATACCAGAAATGG
510065 ACCTTCAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.18, G:0.27, T:0.16
Consensus pattern (22 bp):
GTGCAAGAAATACCAGAAATGG
Left flanking sequence: Indices 509521 -- 510020
TTCTACTGTCGAAGAACTCACTTGCGGGACGGACAACCTACCTAATTAAGAAAGTTGACTTCCTC
CAAACAGCATCCATCTCAGATAAGGAAGAGCAAACTACAGCGACTGACAGGTGAACTCAAGATCT
CTATCTTACTCCGGAGGAGGAGTGAAGTGATTAGAAAGACCTAACCTTTGACTAAAGATCGACAT
CGAGTCAATTACACATAGCAAGCATATAAGGCAACTTCAAAAGAAGCTTACTTAATAAAGAAAAA
TAGATCATTGGATAAATCGGTCAAAAGCCGCCTGCCTTTCCTTCTCCATCCACCTTGGGAGTCAA
ACCACCTTGTTTGGGTTGGGAGTCAAAACGGATCTAAAGACCTTGGTAAATGCACCGATCGTTCC
GACCTTCCTTACATGTCCTTTCAGGGTGACCAGCCCGCCTCCTTCTTCGGCCTTCTTCTCGCCTT
GCGGTGACAGCACCAGCACCACATGCTGACTGTGAGACTGCCTTA
Right flanking sequence: Indices 510065 -- 510564
ACCTTCAATAGAGCGAGCTTTTCCTGGCCTTTTCTCGGGATCGATCTTTCATGATCGGAAACATT
GAGATGCCAAAAAAGTCCCATGCCTTTCCGGACCAACCAACCCGGCCCTCGAAAGTCTCTATGCA
TTTTGGGAGCTGGAGCAGTCAAAGAATAAAAAAGAATAAGATGTCAGTATTGAATAGTCTAATTG
ATTGAAGAAGAAAATGAAAGATTAATTATAATAGTTTACAGGAAGGAAAGAAGAAAGAGAAAGAT
TAACGATCCTTTTTTACAGTTCAAGAATAAAGGGAGAGGAAAGAAAGATGACTGAGAGTGAACTC
CGGAACCTGAACCTGACCCTTTAGTAAATGAATGAAGAACCTTTACTGTCTTTGATTGAAGAAGA
AAATGAAAGATGAAGGAAAGACGAAACGAAAGAAGAAGACGACAGAACAGAACAGGACTATTACT
GATGAACCAGATTGAACGGTAAAGTGGCTGAGCACCTTTACGATG
Found at i:510759 original size:72 final size:72
Alignment explanation
Indices: 510632--510889 Score: 307
Period size: 71 Copynumber: 3.6 Consensus size: 72
510622 GTAAAAGGGG
* * **
510632 TTTTTCCC-TAAGGAAAGCTGCTTCAAGCTAATTTATTCTATCTCCATATAACTGTCAAAGTTCG
1 TTTTTCCCTTAAGGAAAGCTGCTTCAATCAAATAAATTCTATCTCCATATAACTGTCAAAGTTCG
510696 TAATCGC
66 TAATCGC
* *
510703 TTTTTCCC-TAAGGAAAGGTGTTTCAATCAAATGAAATTCTATCTCCATATAACTGTCAAAGTTC
1 TTTTTCCCTTAAGGAAAGCTGCTTCAATCAAAT-AAATTCTATCTCCATATAACTGTCAAAGTTC
510767 GTAATCGC
65 GTAATCGC
* * *
510775 TTTTTCCCTTAATAGCTG-AAGCTG---AAATCAAAGAAATTCTATC-CAATATAACTGTCAAAG
1 TTTTTCCCTT-A-AG--GAAAGCTGCTTCAATCAAATAAATTCTATCTCCATATAACTGTCAAAG
*
510835 TTCGTAAGAC-C
62 TTCGTAA-TCGC
*
510846 TTTTTCCCTTAAGGAAAGCCGCTTCAATCAAATAAATTCTATCT
1 TTTTTCCCTTAAGGAAAGCTGCTTCAATCAAATAAATTCTATCT
510890 TTCCCGTATT
Statistics
Matches: 161, Mismatches: 14, Indels: 23
0.81 0.07 0.12
Matches are distributed among these distances:
67 1 0.01
68 5 0.03
69 2 0.01
70 1 0.01
71 79 0.49
72 56 0.35
73 8 0.05
74 1 0.01
75 2 0.01
76 5 0.03
77 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (72 bp):
TTTTTCCCTTAAGGAAAGCTGCTTCAATCAAATAAATTCTATCTCCATATAACTGTCAAAGTTCG
TAATCGC
Left flanking sequence: Indices 510132 -- 510631
GATGCCAAAAAAGTCCCATGCCTTTCCGGACCAACCAACCCGGCCCTCGAAAGTCTCTATGCATT
TTGGGAGCTGGAGCAGTCAAAGAATAAAAAAGAATAAGATGTCAGTATTGAATAGTCTAATTGAT
TGAAGAAGAAAATGAAAGATTAATTATAATAGTTTACAGGAAGGAAAGAAGAAAGAGAAAGATTA
ACGATCCTTTTTTACAGTTCAAGAATAAAGGGAGAGGAAAGAAAGATGACTGAGAGTGAACTCCG
GAACCTGAACCTGACCCTTTAGTAAATGAATGAAGAACCTTTACTGTCTTTGATTGAAGAAGAAA
ATGAAAGATGAAGGAAAGACGAAACGAAAGAAGAAGACGACAGAACAGAACAGGACTATTACTGA
TGAACCAGATTGAACGGTAAAGTGGCTGAGCACCTTTACGATGAATGAGACTGTAAAGACCATGA
ATTAATTCATTCTATCCACATATAACTGTAAAACAGTAAAAGGGG
Right flanking sequence: Indices 510890 -- 511389
TTCCCGTATTTTAGGGTATAAAATGGATGCTTTACCCGGATTTCCCTCGGTAACTCGACTGTAAA
CACTCAAAAAACAAGATCAAAGTCTATCTTTCCCGTATTTTGAGGTATAAAAGTCTATCTTTACC
CTATTTTGAGGGATAAAATACCGGTCTTGAGGGCAGAGGTAATTTGGAAGTCAATCCTATCGAAG
AATCAATGAGAGTTAACTGGAAGGAAAGACTATCGATTCCTTCTTTCACTCTTGAACTCGGTCTC
ACAATTCCATGGCCTCTCCCTATTTATTCCTTCAAACCAAACACGAACAGTAAACAAAGACGAAA
CGAAAGACTATCGAGAAAACCTTCCCCTGCAATTCTCTGATCCTTTCTTGCTTTCACTCTTTGAC
TGACTCTCTGGTAAGTAAAGCAGCTGGCTTCGCCCCTGAACCTGTCCCTTCTGTGATTGTGAGTT
ATTCTAAGTTCTTGTTCACTTTCACCTATTTATTCACTGTAAACT
Found at i:511011 original size:31 final size:31
Alignment explanation
Indices: 510973--511037 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
510963 AAACAAGATC
*
510973 AAAGTCTATCTTT-CCCGTATTTTGAGGTATA
1 AAAGTCTATCTTTACCC-TATTTTGAGGGATA
511004 AAAGTCTATCTTTACCCTATTTTGAGGGATA
1 AAAGTCTATCTTTACCCTATTTTGAGGGATA
511035 AAA
1 AAA
511038 TACCGGTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 29 0.91
32 3 0.09
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (31 bp):
AAAGTCTATCTTTACCCTATTTTGAGGGATA
Left flanking sequence: Indices 510473 -- 510972
AGACGAAACGAAAGAAGAAGACGACAGAACAGAACAGGACTATTACTGATGAACCAGATTGAACG
GTAAAGTGGCTGAGCACCTTTACGATGAATGAGACTGTAAAGACCATGAATTAATTCATTCTATC
CACATATAACTGTAAAACAGTAAAAGGGGTTTTTCCCTAAGGAAAGCTGCTTCAAGCTAATTTAT
TCTATCTCCATATAACTGTCAAAGTTCGTAATCGCTTTTTCCCTAAGGAAAGGTGTTTCAATCAA
ATGAAATTCTATCTCCATATAACTGTCAAAGTTCGTAATCGCTTTTTCCCTTAATAGCTGAAGCT
GAAATCAAAGAAATTCTATCCAATATAACTGTCAAAGTTCGTAAGACCTTTTTCCCTTAAGGAAA
GCCGCTTCAATCAAATAAATTCTATCTTTCCCGTATTTTAGGGTATAAAATGGATGCTTTACCCG
GATTTCCCTCGGTAACTCGACTGTAAACACTCAAAAAACAAGATC
Right flanking sequence: Indices 511038 -- 511537
TACCGGTCTTGAGGGCAGAGGTAATTTGGAAGTCAATCCTATCGAAGAATCAATGAGAGTTAACT
GGAAGGAAAGACTATCGATTCCTTCTTTCACTCTTGAACTCGGTCTCACAATTCCATGGCCTCTC
CCTATTTATTCCTTCAAACCAAACACGAACAGTAAACAAAGACGAAACGAAAGACTATCGAGAAA
ACCTTCCCCTGCAATTCTCTGATCCTTTCTTGCTTTCACTCTTTGACTGACTCTCTGGTAAGTAA
AGCAGCTGGCTTCGCCCCTGAACCTGTCCCTTCTGTGATTGTGAGTTATTCTAAGTTCTTGTTCA
CTTTCACCTATTTATTCACTGTAAACTCATTCACCTTCTTTCACTCATTCGACAGATTTCCCTCG
CTCGGTAAAGCGTCAAGAAGAACCAAAGACTCTACGATATGACCTTCCCTTCGCTACTGAATGAA
ACCCTTGCCTTATTTCCGGAGGTAAAGCCGCCCGCTGGATGAGAA
Found at i:514732 original size:34 final size:34
Alignment explanation
Indices: 514646--514744 Score: 116
Period size: 34 Copynumber: 3.0 Consensus size: 34
514636 AGAATCAAAT
* *
514646 GAAAGATGAATGAGACTGAACTGGAAG-GAA--A
1 GAAAGATGAATGAGACTGAACTGGAAGTCAATCC
* *
514677 G-AAGAAGAAATGAGAGTGAACTGGAAGTCAATCC
1 GAAAGATG-AATGAGACTGAACTGGAAGTCAATCC
*
514711 GAAAGATGAATGAGACAGAACTGGAAGTCAATCC
1 GAAAGATGAATGAGACTGAACTGGAAGTCAATCC
514745 TCAACATTCT
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
30 5 0.09
31 19 0.34
32 2 0.04
34 25 0.45
35 5 0.09
ACGTcount: A:0.45, C:0.11, G:0.29, T:0.14
Consensus pattern (34 bp):
GAAAGATGAATGAGACTGAACTGGAAGTCAATCC
Left flanking sequence: Indices 514146 -- 514645
TTCATTCTCCTGGAACCGGGGAACCTGACGAGAAGGAAAGAAAGATCAGCTCCGTAACCTGAAAA
AGAAAGGCCTTACTCCTGACTTCTGAATGAGAGCATATGAAATCCTTCTTTCATTGTAAACTAAC
AAAGACTCAACTCAAGATTCATTCTAGTTGTAGAACTGAACTCATTCACCTATTCCTGATTTCAC
TCTTTCGTAAAGCGCTGCTATTTGAAGAACCTGCCCCTCTTCCTATTCTCTTTCTCTCGTTCACC
AGTATTACCTGACCTGTGAACCTATTTACCTTTATTCATTCAATCCTATACTAAAAGAAGAAGAA
GAAGATATTCCTGAGGTCAAGCTATTTGAAGGAAGAACCGGAACAAAGAAAGAAGCAAGACAAGA
TGAATGGAAATCCTTTACTGTCGAGTAAATCAAAGAAAAGAGAAAGCAAGAGACTGAACTACTGA
ACCTGAACTCCTTTATCTTTCTCCTTTACTGTGATAGAATCAAAT
Right flanking sequence: Indices 514745 -- 515244
TCAACATTCTTGATCTGATCCTCAAGATTCCTTCTTTCTCTTTCTCTTCTCCTCTCTCTTCATTC
TTTCTCTTCTCTTTCTCCTCTCCCTACTTACTCATGAACCTCTCCAATCCCATTTTTTGATCGAC
AGCAGGTGGGGTTGGTTCATTCTAAGGTTCCTTATTCCGGTTGTAAAGCGGAAGAAGCCCTTCTC
CCTGCCCCTGCCCTGTCCTATCTGAGAAAAGAGATCATCAAAGACGCACTCAAGAAAGGAATTGC
AAATGAAAGAAGAATCTGTGTTCCCGAGATATGGAGTGGAGTGACTATCCTGAATCTCCTCTTCT
CCTCCCCCCTTTTTTTCTTTCTCGTCGAGAATCTCTTTCTTTTTTTGTATTGTGTATTATTCAGG
ATCTGTAGTTCAAGGGCACTCTTCCTAATCCGAGTTTGAGATGGAATAAGACCCAGTAGTAGAGT
CCCGCCGGGAAGGTCTTTTTTCTATTGATTTTTGACTCCCTTCTG
Found at i:514798 original size:31 final size:31
Alignment explanation
Indices: 514763--514829 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
514753 CTTGATCTGA
*
514763 TCCTCAAGATTCCTTCTTTCTCTT-TCTCTTC
1 TCCTCAAGATTCATTCTTTCTCTTCTCT-TTC
****
514794 TCCTCTCTCTTCATTCTTTCTCTTCTCTTTC
1 TCCTCAAGATTCATTCTTTCTCTTCTCTTTC
514825 TCCTC
1 TCCTC
514830 TCCCTACTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 27 0.90
32 3 0.10
ACGTcount: A:0.06, C:0.39, G:0.01, T:0.54
Consensus pattern (31 bp):
TCCTCAAGATTCATTCTTTCTCTTCTCTTTC
Left flanking sequence: Indices 514263 -- 514762
ATTGTAAACTAACAAAGACTCAACTCAAGATTCATTCTAGTTGTAGAACTGAACTCATTCACCTA
TTCCTGATTTCACTCTTTCGTAAAGCGCTGCTATTTGAAGAACCTGCCCCTCTTCCTATTCTCTT
TCTCTCGTTCACCAGTATTACCTGACCTGTGAACCTATTTACCTTTATTCATTCAATCCTATACT
AAAAGAAGAAGAAGAAGATATTCCTGAGGTCAAGCTATTTGAAGGAAGAACCGGAACAAAGAAAG
AAGCAAGACAAGATGAATGGAAATCCTTTACTGTCGAGTAAATCAAAGAAAAGAGAAAGCAAGAG
ACTGAACTACTGAACCTGAACTCCTTTATCTTTCTCCTTTACTGTGATAGAATCAAATGAAAGAT
GAATGAGACTGAACTGGAAGGAAAGAAGAAGAAATGAGAGTGAACTGGAAGTCAATCCGAAAGAT
GAATGAGACAGAACTGGAAGTCAATCCTCAACATTCTTGATCTGA
Right flanking sequence: Indices 514830 -- 515329
TCCCTACTTACTCATGAACCTCTCCAATCCCATTTTTTGATCGACAGCAGGTGGGGTTGGTTCAT
TCTAAGGTTCCTTATTCCGGTTGTAAAGCGGAAGAAGCCCTTCTCCCTGCCCCTGCCCTGTCCTA
TCTGAGAAAAGAGATCATCAAAGACGCACTCAAGAAAGGAATTGCAAATGAAAGAAGAATCTGTG
TTCCCGAGATATGGAGTGGAGTGACTATCCTGAATCTCCTCTTCTCCTCCCCCCTTTTTTTCTTT
CTCGTCGAGAATCTCTTTCTTTTTTTGTATTGTGTATTATTCAGGATCTGTAGTTCAAGGGCACT
CTTCCTAATCCGAGTTTGAGATGGAATAAGACCCAGTAGTAGAGTCCCGCCGGGAAGGTCTTTTT
TCTATTGATTTTTGACTCCCTTCTGGCCTTTACTTTAAATCTGGTGTTCTTCTCTTTCTCCACGA
GGTAAAGCTCTTTCCAGATGGAGTAGTGCATCTCTGTCTTGAAAG
Found at i:514824 original size:11 final size:11
Alignment explanation
Indices: 514776--514831 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
514766 TCAAGATTCC
514776 TTCT-TTCTCT
1 TTCTCTTCTCT
514786 TTCTCTTCTCCT
1 TTCTCTTCT-CT
*
514798 CTCTCTTCATTCT
1 TTCTCTTC--TCT
514811 TTCTCTTCTCT
1 TTCTCTTCTCT
*
514822 TTCTCCTCTC
1 TTCTCTTCTC
514832 CCTACTTACT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
10 4 0.10
11 16 0.41
12 9 0.23
13 9 0.23
14 1 0.03
ACGTcount: A:0.02, C:0.39, G:0.00, T:0.59
Consensus pattern (11 bp):
TTCTCTTCTCT
Left flanking sequence: Indices 514276 -- 514775
AAAGACTCAACTCAAGATTCATTCTAGTTGTAGAACTGAACTCATTCACCTATTCCTGATTTCAC
TCTTTCGTAAAGCGCTGCTATTTGAAGAACCTGCCCCTCTTCCTATTCTCTTTCTCTCGTTCACC
AGTATTACCTGACCTGTGAACCTATTTACCTTTATTCATTCAATCCTATACTAAAAGAAGAAGAA
GAAGATATTCCTGAGGTCAAGCTATTTGAAGGAAGAACCGGAACAAAGAAAGAAGCAAGACAAGA
TGAATGGAAATCCTTTACTGTCGAGTAAATCAAAGAAAAGAGAAAGCAAGAGACTGAACTACTGA
ACCTGAACTCCTTTATCTTTCTCCTTTACTGTGATAGAATCAAATGAAAGATGAATGAGACTGAA
CTGGAAGGAAAGAAGAAGAAATGAGAGTGAACTGGAAGTCAATCCGAAAGATGAATGAGACAGAA
CTGGAAGTCAATCCTCAACATTCTTGATCTGATCCTCAAGATTCC
Right flanking sequence: Indices 514832 -- 515331
CCTACTTACTCATGAACCTCTCCAATCCCATTTTTTGATCGACAGCAGGTGGGGTTGGTTCATTC
TAAGGTTCCTTATTCCGGTTGTAAAGCGGAAGAAGCCCTTCTCCCTGCCCCTGCCCTGTCCTATC
TGAGAAAAGAGATCATCAAAGACGCACTCAAGAAAGGAATTGCAAATGAAAGAAGAATCTGTGTT
CCCGAGATATGGAGTGGAGTGACTATCCTGAATCTCCTCTTCTCCTCCCCCCTTTTTTTCTTTCT
CGTCGAGAATCTCTTTCTTTTTTTGTATTGTGTATTATTCAGGATCTGTAGTTCAAGGGCACTCT
TCCTAATCCGAGTTTGAGATGGAATAAGACCCAGTAGTAGAGTCCCGCCGGGAAGGTCTTTTTTC
TATTGATTTTTGACTCCCTTCTGGCCTTTACTTTAAATCTGGTGTTCTTCTCTTTCTCCACGAGG
TAAAGCTCTTTCCAGATGGAGTAGTGCATCTCTGTCTTGAAAGCC
Found at i:516928 original size:29 final size:28
Alignment explanation
Indices: 516870--516938 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 28
516860 CAGCTTCGCT
* *
516870 CCTGCCCCTC-TCCCTATCGGTCTCATG
1 CCTGCGCCTCTTCCCTATCGGTCTCAGG
*
516897 CCTGCGCCTCTTCGCCTGTCGGTCTCAGG
1 CCTGCGCCTCTTC-CCTATCGGTCTCAGG
* *
516926 CCTTCGCCCCTTC
1 CCTGCGCCTCTTC
516939 AATAGAATCG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 9 0.26
28 2 0.06
29 24 0.69
ACGTcount: A:0.04, C:0.48, G:0.19, T:0.29
Consensus pattern (28 bp):
CCTGCGCCTCTTCCCTATCGGTCTCAGG
Left flanking sequence: Indices 516370 -- 516869
GGGGGACCTTCGCTTCATTATCAATTTGCCCCGGACCTTCTTTCTTCTCCTACGGAGCCCTGAGA
AAGTCACCGTCGGCAGGTTAGTACAGTTCTCCTGCAGCTGATTTTGCCCTGTGCTGATTCAGGAG
CTTCTTCTTTTTTCTAGGAAATAATAAAGAAAAAGAGCTGGGCGAGAACAAGAAAGCGAAGAACC
GCTCGCAGCCTTTTCTTTCTTCCCGAGTCACATGTGCTGGTAGCCTAGGAGAAGAGAAGCAAGCT
ACCTTCGCCTACCCCCCATATCTATGGCAATGGTCAGAGCCGGTAAGCATGGTAACTGTATCTAA
GGCCGGAGCCGGCGCTCTGCGTTCGAGATAGGTTCCGCTCTGACGTACGCCCCACCTCACATAGA
AAGAAGAAGGGGAACCCCTTTACCTCTCCAACTCGGTTTCATGTCTTCGCCTCTTCGCCCTCCGG
GTCTCACAATTCCTTCACCTCCTCTGTCGGTTTCACAGCTTCGCT
Right flanking sequence: Indices 516939 -- 517438
AATAGAATCGAAGAACCCGTGTGGGTGGGAGGGGATTGAATCATTCATTCATCGGATACGTCTTC
TTCCGTGATCCATTTCATGTCAACTCACATTAGTTAGAAAAGGAAAAGGTCGACTTTACAAAGGG
AACGTCGTTTCCCGCAACCATTTCTTTTTTTGATGTTTTTCTTTCTTCAGGGCTTACGGGTCAGG
TCATTACACCAAAGGCTTGAAGTGAACGAGAGAAGCTATCGAGAGAGTACCAAATGCTGACGGTG
ACGAAGGTAACCTACTTTCGGTGGACGCGGAGCCAACGAGTTCAGTCGAACAGCGTAACGAGTCT
AAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGTTGCAAGCAAATAGAACAGAGA
GAGGAGAGCTTACCCTTTCTTTCTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCCAACAAGAGAG
AATCTTGCTGCTTACTTGCTATATCCCCGCGTTCTTGCACGGCTC
Found at i:517482 original size:23 final size:23
Alignment explanation
Indices: 517438--517482 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
517428 TTGCACGGCT
***
517438 CTTCTCCCTTCGGTCTCGCCCTG
1 CTTCTCCCTTCCCCCTCGCCCTG
*
517461 CTTCTCCCTTCCCCCTCTCCCT
1 CTTCTCCCTTCCCCCTCGCCCT
517483 TTCTTTGGTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.00, C:0.56, G:0.09, T:0.36
Consensus pattern (23 bp):
CTTCTCCCTTCCCCCTCGCCCTG
Left flanking sequence: Indices 516938 -- 517437
CAATAGAATCGAAGAACCCGTGTGGGTGGGAGGGGATTGAATCATTCATTCATCGGATACGTCTT
CTTCCGTGATCCATTTCATGTCAACTCACATTAGTTAGAAAAGGAAAAGGTCGACTTTACAAAGG
GAACGTCGTTTCCCGCAACCATTTCTTTTTTTGATGTTTTTCTTTCTTCAGGGCTTACGGGTCAG
GTCATTACACCAAAGGCTTGAAGTGAACGAGAGAAGCTATCGAGAGAGTACCAAATGCTGACGGT
GACGAAGGTAACCTACTTTCGGTGGACGCGGAGCCAACGAGTTCAGTCGAACAGCGTAACGAGTC
TAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGTTGCAAGCAAATAGAACAGAG
AGAGGAGAGCTTACCCTTTCTTTCTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCCAACAAGAGA
GAATCTTGCTGCTTACTTGCTATATCCCCGCGTTCTTGCACGGCT
Right flanking sequence: Indices 517483 -- 517982
TTCTTTGGTCTCGCGGTTGAACCTCTTCTTAGGTCTCACAATTCCTGAACCTCCTCTGTCGGTTT
CACAGCTTCGCTCCTGCCCCTCTCCCTTCGGTCTCGCGGTTTCACCCCTCTCCCTTCGGTCTCGC
GGTTTCACCCCTCTCCCTTTTCTTTTCTCGTCGAGCGTCTTCACCTCTTCGCCCGTAGGGTCTCA
GGTCTTCGCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTA
AGGCATCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCC
GATCGGATCTGTCAAGAACGAGCTGACGACTACAGGGGAAGGAAGCGGCTGACTGCAGTCCCTGA
GCCCAGCTTGTAGCAAGCAAAAAGTGTGACTTGAACCTACTTTGCTAAGAGAAGATCTCGAAGGG
AAAAACAGACGGCAGAAAGCAATCCCTTCCAACCAGCCAACCCCC
Found at i:517596 original size:28 final size:28
Alignment explanation
Indices: 517564--517631 Score: 136
Period size: 28 Copynumber: 2.4 Consensus size: 28
517554 TTCGCTCCTG
517564 CCCCTCTCCCTTCGGTCTCGCGGTTTCA
1 CCCCTCTCCCTTCGGTCTCGCGGTTTCA
517592 CCCCTCTCCCTTCGGTCTCGCGGTTTCA
1 CCCCTCTCCCTTCGGTCTCGCGGTTTCA
517620 CCCCTCTCCCTT
1 CCCCTCTCCCTT
517632 TTCTTTTCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.03, C:0.50, G:0.15, T:0.32
Consensus pattern (28 bp):
CCCCTCTCCCTTCGGTCTCGCGGTTTCA
Left flanking sequence: Indices 517064 -- 517563
AAGGGAACGTCGTTTCCCGCAACCATTTCTTTTTTTGATGTTTTTCTTTCTTCAGGGCTTACGGG
TCAGGTCATTACACCAAAGGCTTGAAGTGAACGAGAGAAGCTATCGAGAGAGTACCAAATGCTGA
CGGTGACGAAGGTAACCTACTTTCGGTGGACGCGGAGCCAACGAGTTCAGTCGAACAGCGTAACG
AGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGTTGCAAGCAAATAGAAC
AGAGAGAGGAGAGCTTACCCTTTCTTTCTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCCAACAA
GAGAGAATCTTGCTGCTTACTTGCTATATCCCCGCGTTCTTGCACGGCTCTTCTCCCTTCGGTCT
CGCCCTGCTTCTCCCTTCCCCCTCTCCCTTTCTTTGGTCTCGCGGTTGAACCTCTTCTTAGGTCT
CACAATTCCTGAACCTCCTCTGTCGGTTTCACAGCTTCGCTCCTG
Right flanking sequence: Indices 517632 -- 518131
TTCTTTTCTCGTCGAGCGTCTTCACCTCTTCGCCCGTAGGGTCTCAGGTCTTCGCCCCTCTCCCC
GTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTAC
CGGCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAAC
GAGCTGACGACTACAGGGGAAGGAAGCGGCTGACTGCAGTCCCTGAGCCCAGCTTGTAGCAAGCA
AAAAGTGTGACTTGAACCTACTTTGCTAAGAGAAGATCTCGAAGGGAAAAACAGACGGCAGAAAG
CAATCCCTTCCAACCAGCCAACCCCCGGAGTTGAACACAAGCCCTTTTTAGTCAAGCTTCGGCCG
GGTTCTTCTATCAATCTCCTGCCCCTTGCTTCACTCCTTGTTCTGTAAACCGGTCGCTGGTTGAT
CTGATCGGACCCAGGACACGCGAGAGCCCAGCCAGGGAGGACGGA
Found at i:519446 original size:26 final size:25
Alignment explanation
Indices: 519417--519468 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
519407 TTGATATTGA
519417 TTCTCCTTTCGTTCTCTTCTTTCTTC
1 TTCTCCTTTCGTTCTCTTCTTT-TTC
519443 TTCTCCTTTCGTTCTCTTCTTTTTC
1 TTCTCCTTTCGTTCTCTTCTTTTTC
519468 T
1 T
519469 ATTGATTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.00, C:0.33, G:0.04, T:0.63
Consensus pattern (25 bp):
TTCTCCTTTCGTTCTCTTCTTTTTC
Left flanking sequence: Indices 518917 -- 519416
GTAGGAATGGGAGCTGCACGTTAGCACTTGACTTTCTTTTCCGGCATAAGAGGTCTTGTCTCTTT
ACAGTTTTAGCGGAATAAGCAGTCTTGGTGCTTTGGGCGTGGCACTAGTCTGACTGTGCTTTCCT
AGTTGGCTATTCTTGATCTGATCTTGTTGCCAGGAAGAAGGGGGCATCCAACAGCCTACAGACAG
AGTGATGGTGATGCTTCTGTCATATATATAGTCTCTTTTTTCATTTTGGTTGGAGGAATCCGTAT
AAATAGACTGTTTGGCTTAGTCTTCGTATCAAACTCTAAAAAGAGGTTGGGTTGTTTTCTTGCAA
TTGAATCAAAAGGAACTGTTCTTACCTCAAAGGGAGTGCAGCCAGCCTATAGAACATAATATAGG
ACAAGGAGAGTAAATCAAAGAGATAGTTCAACCTTCACCTTCACCGAAACCGACACCCTTTTCCT
ATTTATTCTCAATTCCGATTCGCCTTCCGATTCTTTTGATATTGA
Right flanking sequence: Indices 519469 -- 519968
ATTGATTCTCAATTCCTCCTTGACTTTCTCTTCTGTAAAAGATTAGAATGGAATTGATCGAGAGG
AGCACTTCTCGGGGTAGCATCGCCCAGGTTGAGAAGGAATCGCTTAGGTTTCTTCGGAACAAGAA
GAATAGGAATTCTTCTCTTCGATGAGAGATAACCCGGGCTTTAGACACTCGCCCTATAAATCTCC
ATAGAAATGGGGAGTGCCAGATGCGGAATCAGTTCCAGTCCCAGCAGCTGAGGCAGTGAGAGGTG
AGAAGAATAACAAGAGAGCGGAAGGAAGATCCAGTCAGCAGTAGTATATTCCGTTGTTTGCGGTG
GAATAGATTCAAGCAAGCGTCCGGGCCAGTAGATCCAGAGCAAATAGGCGTTTGACTTAGTTTCT
TTTGCAGTGGATTCTAATCCCGATGTTGATCCGACTTACCGGTGATAGTCGCAGCACCAGGAGCT
TTCAAGGGAGGCGGCCATGTATATCTCGATAGTAGCCGTGGCATA
Found at i:519451 original size:13 final size:14
Alignment explanation
Indices: 519417--519457 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
519407 TTGATATTGA
519417 TTCTCCTTTCGTTC
1 TTCTCCTTTCGTTC
*
519431 -TCTTCTTTC-TTC
1 TTCTCCTTTCGTTC
519443 TTCTCCTTTCGTTC
1 TTCTCCTTTCGTTC
519457 T
1 T
519458 CTTCTTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 3 0.13
13 16 0.70
14 4 0.17
ACGTcount: A:0.00, C:0.34, G:0.05, T:0.61
Consensus pattern (14 bp):
TTCTCCTTTCGTTC
Left flanking sequence: Indices 518917 -- 519416
GTAGGAATGGGAGCTGCACGTTAGCACTTGACTTTCTTTTCCGGCATAAGAGGTCTTGTCTCTTT
ACAGTTTTAGCGGAATAAGCAGTCTTGGTGCTTTGGGCGTGGCACTAGTCTGACTGTGCTTTCCT
AGTTGGCTATTCTTGATCTGATCTTGTTGCCAGGAAGAAGGGGGCATCCAACAGCCTACAGACAG
AGTGATGGTGATGCTTCTGTCATATATATAGTCTCTTTTTTCATTTTGGTTGGAGGAATCCGTAT
AAATAGACTGTTTGGCTTAGTCTTCGTATCAAACTCTAAAAAGAGGTTGGGTTGTTTTCTTGCAA
TTGAATCAAAAGGAACTGTTCTTACCTCAAAGGGAGTGCAGCCAGCCTATAGAACATAATATAGG
ACAAGGAGAGTAAATCAAAGAGATAGTTCAACCTTCACCTTCACCGAAACCGACACCCTTTTCCT
ATTTATTCTCAATTCCGATTCGCCTTCCGATTCTTTTGATATTGA
Right flanking sequence: Indices 519458 -- 519957
CTTCTTTTTCTATTGATTCTCAATTCCTCCTTGACTTTCTCTTCTGTAAAAGATTAGAATGGAAT
TGATCGAGAGGAGCACTTCTCGGGGTAGCATCGCCCAGGTTGAGAAGGAATCGCTTAGGTTTCTT
CGGAACAAGAAGAATAGGAATTCTTCTCTTCGATGAGAGATAACCCGGGCTTTAGACACTCGCCC
TATAAATCTCCATAGAAATGGGGAGTGCCAGATGCGGAATCAGTTCCAGTCCCAGCAGCTGAGGC
AGTGAGAGGTGAGAAGAATAACAAGAGAGCGGAAGGAAGATCCAGTCAGCAGTAGTATATTCCGT
TGTTTGCGGTGGAATAGATTCAAGCAAGCGTCCGGGCCAGTAGATCCAGAGCAAATAGGCGTTTG
ACTTAGTTTCTTTTGCAGTGGATTCTAATCCCGATGTTGATCCGACTTACCGGTGATAGTCGCAG
CACCAGGAGCTTTCAAGGGAGGCGGCCATGTATATCTCGATAGTA
Found at i:519462 original size:16 final size:16
Alignment explanation
Indices: 519417--519462 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 16
519407 TTGATATTGA
519417 TTCTCCTTTCGTTCTC
1 TTCTCCTTTCGTTCTC
519433 -T-T-CTTTC--T-TC
1 TTCTCCTTTCGTTCTC
519443 TTCTCCTTTCGTTCTC
1 TTCTCCTTTCGTTCTC
519459 TTCT
1 TTCT
519463 TTTTCTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 12
0.67 0.00 0.33
Matches are distributed among these distances:
10 2 0.08
11 2 0.08
12 1 0.04
13 10 0.42
14 1 0.04
15 2 0.08
16 6 0.25
ACGTcount: A:0.00, C:0.35, G:0.04, T:0.61
Consensus pattern (16 bp):
TTCTCCTTTCGTTCTC
Left flanking sequence: Indices 518917 -- 519416
GTAGGAATGGGAGCTGCACGTTAGCACTTGACTTTCTTTTCCGGCATAAGAGGTCTTGTCTCTTT
ACAGTTTTAGCGGAATAAGCAGTCTTGGTGCTTTGGGCGTGGCACTAGTCTGACTGTGCTTTCCT
AGTTGGCTATTCTTGATCTGATCTTGTTGCCAGGAAGAAGGGGGCATCCAACAGCCTACAGACAG
AGTGATGGTGATGCTTCTGTCATATATATAGTCTCTTTTTTCATTTTGGTTGGAGGAATCCGTAT
AAATAGACTGTTTGGCTTAGTCTTCGTATCAAACTCTAAAAAGAGGTTGGGTTGTTTTCTTGCAA
TTGAATCAAAAGGAACTGTTCTTACCTCAAAGGGAGTGCAGCCAGCCTATAGAACATAATATAGG
ACAAGGAGAGTAAATCAAAGAGATAGTTCAACCTTCACCTTCACCGAAACCGACACCCTTTTCCT
ATTTATTCTCAATTCCGATTCGCCTTCCGATTCTTTTGATATTGA
Right flanking sequence: Indices 519463 -- 519962
TTTTCTATTGATTCTCAATTCCTCCTTGACTTTCTCTTCTGTAAAAGATTAGAATGGAATTGATC
GAGAGGAGCACTTCTCGGGGTAGCATCGCCCAGGTTGAGAAGGAATCGCTTAGGTTTCTTCGGAA
CAAGAAGAATAGGAATTCTTCTCTTCGATGAGAGATAACCCGGGCTTTAGACACTCGCCCTATAA
ATCTCCATAGAAATGGGGAGTGCCAGATGCGGAATCAGTTCCAGTCCCAGCAGCTGAGGCAGTGA
GAGGTGAGAAGAATAACAAGAGAGCGGAAGGAAGATCCAGTCAGCAGTAGTATATTCCGTTGTTT
GCGGTGGAATAGATTCAAGCAAGCGTCCGGGCCAGTAGATCCAGAGCAAATAGGCGTTTGACTTA
GTTTCTTTTGCAGTGGATTCTAATCCCGATGTTGATCCGACTTACCGGTGATAGTCGCAGCACCA
GGAGCTTTCAAGGGAGGCGGCCATGTATATCTCGATAGTAGCCGT
Found at i:519464 original size:13 final size:13
Alignment explanation
Indices: 519422--519464 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
519412 ATTGATTCTC
519422 CTTTCGTTCTCTT
1 CTTTCGTTCTCTT
*
519435 CTTTC-TTCTTCTC
1 CTTTCGTTC-TCTT
519448 CTTTCGTTCTCTT
1 CTTTCGTTCTCTT
519461 CTTT
1 CTTT
519465 TTCTATTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 3 0.12
13 20 0.77
14 3 0.12
ACGTcount: A:0.00, C:0.33, G:0.05, T:0.63
Consensus pattern (13 bp):
CTTTCGTTCTCTT
Left flanking sequence: Indices 518922 -- 519421
AATGGGAGCTGCACGTTAGCACTTGACTTTCTTTTCCGGCATAAGAGGTCTTGTCTCTTTACAGT
TTTAGCGGAATAAGCAGTCTTGGTGCTTTGGGCGTGGCACTAGTCTGACTGTGCTTTCCTAGTTG
GCTATTCTTGATCTGATCTTGTTGCCAGGAAGAAGGGGGCATCCAACAGCCTACAGACAGAGTGA
TGGTGATGCTTCTGTCATATATATAGTCTCTTTTTTCATTTTGGTTGGAGGAATCCGTATAAATA
GACTGTTTGGCTTAGTCTTCGTATCAAACTCTAAAAAGAGGTTGGGTTGTTTTCTTGCAATTGAA
TCAAAAGGAACTGTTCTTACCTCAAAGGGAGTGCAGCCAGCCTATAGAACATAATATAGGACAAG
GAGAGTAAATCAAAGAGATAGTTCAACCTTCACCTTCACCGAAACCGACACCCTTTTCCTATTTA
TTCTCAATTCCGATTCGCCTTCCGATTCTTTTGATATTGATTCTC
Right flanking sequence: Indices 519465 -- 519964
TTCTATTGATTCTCAATTCCTCCTTGACTTTCTCTTCTGTAAAAGATTAGAATGGAATTGATCGA
GAGGAGCACTTCTCGGGGTAGCATCGCCCAGGTTGAGAAGGAATCGCTTAGGTTTCTTCGGAACA
AGAAGAATAGGAATTCTTCTCTTCGATGAGAGATAACCCGGGCTTTAGACACTCGCCCTATAAAT
CTCCATAGAAATGGGGAGTGCCAGATGCGGAATCAGTTCCAGTCCCAGCAGCTGAGGCAGTGAGA
GGTGAGAAGAATAACAAGAGAGCGGAAGGAAGATCCAGTCAGCAGTAGTATATTCCGTTGTTTGC
GGTGGAATAGATTCAAGCAAGCGTCCGGGCCAGTAGATCCAGAGCAAATAGGCGTTTGACTTAGT
TTCTTTTGCAGTGGATTCTAATCCCGATGTTGATCCGACTTACCGGTGATAGTCGCAGCACCAGG
AGCTTTCAAGGGAGGCGGCCATGTATATCTCGATAGTAGCCGTGG
Found at i:519478 original size:31 final size:31
Alignment explanation
Indices: 519402--519478 Score: 92
Period size: 26 Copynumber: 2.6 Consensus size: 31
519392 CGCCTTCCGA
**
519402 TTCTTTTGATATTGATTCTCCTTTCGTTCTC
1 TTCTTTTTCTATTGATTCTCCTTTCGTTCTC
*
519433 TTC--TTTC--TT-CTTCTCCTTTCGTTCTC
1 TTCTTTTTCTATTGATTCTCCTTTCGTTCTC
519459 TTCTTTTTCTATTGATTCTC
1 TTCTTTTTCTATTGATTCTC
519479 AATTCCTCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
26 19 0.51
27 2 0.05
28 4 0.11
29 2 0.05
30 2 0.05
31 8 0.22
ACGTcount: A:0.06, C:0.26, G:0.06, T:0.61
Consensus pattern (31 bp):
TTCTTTTTCTATTGATTCTCCTTTCGTTCTC
Left flanking sequence: Indices 518902 -- 519401
AGGCTTTCTCTTGGTGTAGGAATGGGAGCTGCACGTTAGCACTTGACTTTCTTTTCCGGCATAAG
AGGTCTTGTCTCTTTACAGTTTTAGCGGAATAAGCAGTCTTGGTGCTTTGGGCGTGGCACTAGTC
TGACTGTGCTTTCCTAGTTGGCTATTCTTGATCTGATCTTGTTGCCAGGAAGAAGGGGGCATCCA
ACAGCCTACAGACAGAGTGATGGTGATGCTTCTGTCATATATATAGTCTCTTTTTTCATTTTGGT
TGGAGGAATCCGTATAAATAGACTGTTTGGCTTAGTCTTCGTATCAAACTCTAAAAAGAGGTTGG
GTTGTTTTCTTGCAATTGAATCAAAAGGAACTGTTCTTACCTCAAAGGGAGTGCAGCCAGCCTAT
AGAACATAATATAGGACAAGGAGAGTAAATCAAAGAGATAGTTCAACCTTCACCTTCACCGAAAC
CGACACCCTTTTCCTATTTATTCTCAATTCCGATTCGCCTTCCGA
Right flanking sequence: Indices 519479 -- 519978
AATTCCTCCTTGACTTTCTCTTCTGTAAAAGATTAGAATGGAATTGATCGAGAGGAGCACTTCTC
GGGGTAGCATCGCCCAGGTTGAGAAGGAATCGCTTAGGTTTCTTCGGAACAAGAAGAATAGGAAT
TCTTCTCTTCGATGAGAGATAACCCGGGCTTTAGACACTCGCCCTATAAATCTCCATAGAAATGG
GGAGTGCCAGATGCGGAATCAGTTCCAGTCCCAGCAGCTGAGGCAGTGAGAGGTGAGAAGAATAA
CAAGAGAGCGGAAGGAAGATCCAGTCAGCAGTAGTATATTCCGTTGTTTGCGGTGGAATAGATTC
AAGCAAGCGTCCGGGCCAGTAGATCCAGAGCAAATAGGCGTTTGACTTAGTTTCTTTTGCAGTGG
ATTCTAATCCCGATGTTGATCCGACTTACCGGTGATAGTCGCAGCACCAGGAGCTTTCAAGGGAG
GCGGCCATGTATATCTCGATAGTAGCCGTGGCATACCTTCCGGAT
Found at i:521004 original size:39 final size:39
Alignment explanation
Indices: 520949--521027 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
520939 CCGATCCATT
* *
520949 AATATCATGATTGGGTCGCCCAGGCCAGATCGTCAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCGTCAGTGA
520988 AATATCATGATCGGGTCGACCAGGCCAGATCGTCAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCGTCAGTGA
521027 A
1 A
521028 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCGTCAGTGA
Left flanking sequence: Indices 520449 -- 520948
AATAGTCGAATCTATCTCTCAGCGATTCTTTTCTCCACTAAGAACCCCTTCCCAACCAGCCCGCC
CGATCGATTTTGTAAGGCTAATTCAAAGGGGTGAATCTGGTCCGAAGTTGTCGGAACGAATCGTT
TGCTTTATCGAAGCTTTATTAGGGGGTCTTGGTTGGCCATTTTCAACCATTACAGCAGGCGTCGA
CCAGCTTTGCGATACGGACGGACACAAAAAAGAACGCAGGCAGCGGAAATGCAAAAGAGAAGAGA
AAAGATTCCCGACCCAGAGCATCTTATTGACTCAACCACAAATCTGTTGAATGAAGGTAGCTTGC
TTACTCTCAGCCGCTAGTTAGAAGGAAATCCGTTGACTTCGTTTATGCCCTTATGCAGTAAAGAA
AGCACAAGTGAGGCGGGCTTCCATTCGAAGTAAGGTAAGAGGATTCGATCTTGCACCATCTTCAA
CTCTTCTCGGGATCCGGTGTTTTTCGAGAAAAGGTCCGATCCATT
Right flanking sequence: Indices 521028 -- 521527
TAGAAAATCGAAAACGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATGATAAA
AGAACCTCTTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGGATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATCGCGGGTTG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACTAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:533666 original size:26 final size:26
Alignment explanation
Indices: 533630--533681 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
533620 AAAAGAAGGA
533630 TCTGCGGCTGAACCTATTCCTGATTG
1 TCTGCGGCTGAACCTATTCCTGATTG
*
533656 TCTGCTGCTGAACCTATTCCTGATTG
1 TCTGCGGCTGAACCTATTCCTGATTG
533682 ATTGACTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGCGGCTGAACCTATTCCTGATTG
Left flanking sequence: Indices 533130 -- 533629
AGCAAGACAAGATTAACGATCCTTTGATTGAACTCGTCTACAACTATCAGCTGCTTCTTTCCTGA
AATCCTTCTTTCACTCCTGAACCGGAAGGAAGTCAAGAGGAAACTCCTATTGCTATTGATTCTTG
ATCCTTTATAGTGTTTGAAAGAAGAAAGCTAACTAACCAACCCTTTGAAAGAGGAAACCGTCACC
CTTACTCTTTGACTCTCTTTCTATAGTGTTTGAAAGAGAATCAATCCGCCTATAAACTCTTATTC
TTCTATTCTATTTCTGCATTCTCCTGAACCTATGGATTCTTTCTTTGTCGAGTCAGTTAATTCAA
TCCGTCACCTAGTAAACCCCGTATCATTGGTTCTTTCTCCTCCTTAAGAGGACATATGTATGGTA
TGGCCAGTTGTGAATCTATTCTTTCACAGTAAACAAAGACTGAAGGAAAGCTGCATTAAACTTTG
TAACTGTCAGACTCAACGAAAGCTTCATGAGACGTAAAAGAAGGA
Right flanking sequence: Indices 533682 -- 534181
ATTGACTGAACTTCACTCCTTTACTACTTACTCATTCTGTTTATACTTACTCTATTCTATTCCCT
GACCGATACTTGAACAGCTCTTGATCTTTTCTTGCTTTCACTCTTTGACTGACTGCTAAAGTAAC
TAATTCAGTTACTCGCCGACTGAAGGGTTGAACTAACTAACTATGTTTACGGTCTCTGTTTCTTG
TTCATTATATTATTCTTTTATAGGTAAATTCAGTGTATTGATTGTTGAGAGTTAGTCTTTCTTTC
TCCTTACTTTACCGGTATTTTAGGCTTAATGTTAATGTAATAAGACTGATGGAAGGAAGTAACTC
TTTTACTTCACCTTCTCTTCTTTGTATGTAACTAAGCTGAGCGGAAGGTCAAGCTCGTACGTAAC
CTATTCTATTTCTATTGATAAAGAAAGCTGCAGCTAATGAATTAACTAACTCTTTCACTTCCAAC
TCTGTCCGAGCATATTCTCTCCCTCCTGTCCTTTACTGAACTTCT
Found at i:533730 original size:19 final size:21
Alignment explanation
Indices: 533701--533739 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
533691 ACTTCACTCC
533701 TTTACTACTTACTC-ATTCTG
1 TTTACTACTTACTCTATTCTG
533721 TTTA-TACTTACTCTATTCT
1 TTTACTACTTACTCTATTCT
533740 ATTCCCTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.21, C:0.23, G:0.03, T:0.54
Consensus pattern (21 bp):
TTTACTACTTACTCTATTCTG
Left flanking sequence: Indices 533201 -- 533700
TCTTTCACTCCTGAACCGGAAGGAAGTCAAGAGGAAACTCCTATTGCTATTGATTCTTGATCCTT
TATAGTGTTTGAAAGAAGAAAGCTAACTAACCAACCCTTTGAAAGAGGAAACCGTCACCCTTACT
CTTTGACTCTCTTTCTATAGTGTTTGAAAGAGAATCAATCCGCCTATAAACTCTTATTCTTCTAT
TCTATTTCTGCATTCTCCTGAACCTATGGATTCTTTCTTTGTCGAGTCAGTTAATTCAATCCGTC
ACCTAGTAAACCCCGTATCATTGGTTCTTTCTCCTCCTTAAGAGGACATATGTATGGTATGGCCA
GTTGTGAATCTATTCTTTCACAGTAAACAAAGACTGAAGGAAAGCTGCATTAAACTTTGTAACTG
TCAGACTCAACGAAAGCTTCATGAGACGTAAAAGAAGGATCTGCGGCTGAACCTATTCCTGATTG
TCTGCTGCTGAACCTATTCCTGATTGATTGACTGAACTTCACTCC
Right flanking sequence: Indices 533740 -- 534239
ATTCCCTGACCGATACTTGAACAGCTCTTGATCTTTTCTTGCTTTCACTCTTTGACTGACTGCTA
AAGTAACTAATTCAGTTACTCGCCGACTGAAGGGTTGAACTAACTAACTATGTTTACGGTCTCTG
TTTCTTGTTCATTATATTATTCTTTTATAGGTAAATTCAGTGTATTGATTGTTGAGAGTTAGTCT
TTCTTTCTCCTTACTTTACCGGTATTTTAGGCTTAATGTTAATGTAATAAGACTGATGGAAGGAA
GTAACTCTTTTACTTCACCTTCTCTTCTTTGTATGTAACTAAGCTGAGCGGAAGGTCAAGCTCGT
ACGTAACCTATTCTATTTCTATTGATAAAGAAAGCTGCAGCTAATGAATTAACTAACTCTTTCAC
TTCCAACTCTGTCCGAGCATATTCTCTCCCTCCTGTCCTTTACTGAACTTCTATCTACTCTACTG
CTAAACTCCTAATTCATATAATCTTGAACTCGTTAAGTAGTATTA
Found at i:535457 original size:59 final size:62
Alignment explanation
Indices: 535342--535493 Score: 229
Period size: 59 Copynumber: 2.4 Consensus size: 62
535332 TCATTAAAGG
535342 AAGGAAGGAAGCGGTAAAGCTAACCTCTCTCTCTAACGTCTCTAGCAAGCTAACAACATTTACAT
1 AAGGAAGGAAGCGGTAAAGCTAA---C-CTCTCT-ACGTCTCTAGCAAGCTAACAACATTTACAT
535407 TA
61 TA
535409 AAGGAAGGAAGCGGTAAAGCTAACCTCTCT-C-T-TCTAGCAAGCTAACAACATTTACATTA
1 AAGGAAGGAAGCGGTAAAGCTAACCTCTCTACGTCTCTAGCAAGCTAACAACATTTACATTA
*
535468 AAGGAAGGAAGCGGTAAAGCTTACCT
1 AAGGAAGGAAGCGGTAAAGCTAACCT
535494 ATAGTGACGA
Statistics
Matches: 84, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
59 52 0.62
60 1 0.01
61 1 0.01
63 6 0.07
64 1 0.01
67 23 0.27
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (62 bp):
AAGGAAGGAAGCGGTAAAGCTAACCTCTCTACGTCTCTAGCAAGCTAACAACATTTACATTA
Left flanking sequence: Indices 534842 -- 535341
TGTTACTACTTACCTTCCTTCCTTGCAATCTTCTAAGTAACCTTACTTAACCTGACGAGCAAGAG
AACAACACATTTACATTACGGAAGGGTAAAGCCCTAGCTAGTCATGAAAGAACAACAACGTTTAC
ATTACGGAAGGGTAAAGTCCTCTCTTCTCAAGAGAACAACAAAACAACAAGATTATTACATTAGA
GGAAGAAAGAAGGTAAAGCTCAAGCTCCTTCACCTCCCCTATGGGTAAAGGGGCTTCGCTCATTC
ACTTATAGAGCACAACAACAACAAGATAAGATTATTACATTAGAGGAAAGAAGGGCAGCAAGTCC
TCTCTTATACTCTCTTCTAAGTAACCTCTGGAGCAACCAAGCTAACAACATTCGTTACATACGGG
AAGGGGGCGGTAAGGCTTACCCCTAGTCTACAGAAAGCAAGCAGCAGGCAAGCAACAACAATATA
TTCATTACAGGAAAGAAGGGGTAAGGTAAAGCTAATCATTAAAGG
Right flanking sequence: Indices 535494 -- 535993
ATAGTGACGAACAACTACATTAGTTTACTGACGAACAACTACATTAGTTTACATTACAGGAAGGT
AAAGCTTACCTATAGTGACGAACAACTACAATATTTACATTACGGAAGGGTAAAGCTTACCCCTA
GTCATGAGAAAGACAAACAACAAGACAACATTCATTACAGACAGAAAGGTAAACTCATTCACCTA
CAAACACAACAACAACAACATTCTTTACAGACAAACAAGGTAAAGCTAATCTGACGTACACAGAA
CAAATGGAAATACGAAATACAATAAAACAATATTGATATATCTTCCCGGACCACTTACTCTATTT
CTTGATTGAAAAACAACTAAATATTGATGACTAAAATGACTAAATATTGCTGAAGACGAGTTCTC
TGTCAGACTCTCTCTCCTGTTCCTGTTCCAGTGTTTTTTGAATCAAAGTAACTGCACAGGAAGAA
ACCTATAGTGTTTGTTTCAATCCTAAAGAGAAAGGCTTAAGCCAA
Found at i:535530 original size:24 final size:24
Alignment explanation
Indices: 535498--535545 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
535488 TTACCTATAG
535498 TGACGAACAACTACATTAGTTTAC
1 TGACGAACAACTACATTAGTTTAC
535522 TGACGAACAACTACATTAGTTTAC
1 TGACGAACAACTACATTAGTTTAC
535546 ATTACAGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (24 bp):
TGACGAACAACTACATTAGTTTAC
Left flanking sequence: Indices 534998 -- 535497
CTCAAGAGAACAACAAAACAACAAGATTATTACATTAGAGGAAGAAAGAAGGTAAAGCTCAAGCT
CCTTCACCTCCCCTATGGGTAAAGGGGCTTCGCTCATTCACTTATAGAGCACAACAACAACAAGA
TAAGATTATTACATTAGAGGAAAGAAGGGCAGCAAGTCCTCTCTTATACTCTCTTCTAAGTAACC
TCTGGAGCAACCAAGCTAACAACATTCGTTACATACGGGAAGGGGGCGGTAAGGCTTACCCCTAG
TCTACAGAAAGCAAGCAGCAGGCAAGCAACAACAATATATTCATTACAGGAAAGAAGGGGTAAGG
TAAAGCTAATCATTAAAGGAAGGAAGGAAGCGGTAAAGCTAACCTCTCTCTCTAACGTCTCTAGC
AAGCTAACAACATTTACATTAAAGGAAGGAAGCGGTAAAGCTAACCTCTCTCTTCTAGCAAGCTA
ACAACATTTACATTAAAGGAAGGAAGCGGTAAAGCTTACCTATAG
Right flanking sequence: Indices 535546 -- 536045
ATTACAGGAAGGTAAAGCTTACCTATAGTGACGAACAACTACAATATTTACATTACGGAAGGGTA
AAGCTTACCCCTAGTCATGAGAAAGACAAACAACAAGACAACATTCATTACAGACAGAAAGGTAA
ACTCATTCACCTACAAACACAACAACAACAACATTCTTTACAGACAAACAAGGTAAAGCTAATCT
GACGTACACAGAACAAATGGAAATACGAAATACAATAAAACAATATTGATATATCTTCCCGGACC
ACTTACTCTATTTCTTGATTGAAAAACAACTAAATATTGATGACTAAAATGACTAAATATTGCTG
AAGACGAGTTCTCTGTCAGACTCTCTCTCCTGTTCCTGTTCCAGTGTTTTTTGAATCAAAGTAAC
TGCACAGGAAGAAACCTATAGTGTTTGTTTCAATCCTAAAGAGAAAGGCTTAAGCCAAGATGCGT
GAACTAACTCTTTCCCCTTCTAAGTAACCTGATTTGATTGAATTA
Found at i:535611 original size:51 final size:52
Alignment explanation
Indices: 535522--535619 Score: 164
Period size: 51 Copynumber: 1.9 Consensus size: 52
535512 ATTAGTTTAC
*
535522 TGACGAACAACTACATTAGTTTACATTACAGGAAGGTAAAGCTTACCTATAG
1 TGACGAACAACTACAATAGTTTACATTACAGGAAGGTAAAGCTTACCTATAG
535574 TGACGAACAACTACAATA-TTTACATTAC-GGAAGGGTAAAGCTTACC
1 TGACGAACAACTACAATAGTTTACATTACAGGAA-GGTAAAGCTTACC
535620 CCTAGTCATG
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
50 4 0.09
51 23 0.52
52 17 0.39
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (52 bp):
TGACGAACAACTACAATAGTTTACATTACAGGAAGGTAAAGCTTACCTATAG
Left flanking sequence: Indices 535022 -- 535521
GATTATTACATTAGAGGAAGAAAGAAGGTAAAGCTCAAGCTCCTTCACCTCCCCTATGGGTAAAG
GGGCTTCGCTCATTCACTTATAGAGCACAACAACAACAAGATAAGATTATTACATTAGAGGAAAG
AAGGGCAGCAAGTCCTCTCTTATACTCTCTTCTAAGTAACCTCTGGAGCAACCAAGCTAACAACA
TTCGTTACATACGGGAAGGGGGCGGTAAGGCTTACCCCTAGTCTACAGAAAGCAAGCAGCAGGCA
AGCAACAACAATATATTCATTACAGGAAAGAAGGGGTAAGGTAAAGCTAATCATTAAAGGAAGGA
AGGAAGCGGTAAAGCTAACCTCTCTCTCTAACGTCTCTAGCAAGCTAACAACATTTACATTAAAG
GAAGGAAGCGGTAAAGCTAACCTCTCTCTTCTAGCAAGCTAACAACATTTACATTAAAGGAAGGA
AGCGGTAAAGCTTACCTATAGTGACGAACAACTACATTAGTTTAC
Right flanking sequence: Indices 535620 -- 536119
CCTAGTCATGAGAAAGACAAACAACAAGACAACATTCATTACAGACAGAAAGGTAAACTCATTCA
CCTACAAACACAACAACAACAACATTCTTTACAGACAAACAAGGTAAAGCTAATCTGACGTACAC
AGAACAAATGGAAATACGAAATACAATAAAACAATATTGATATATCTTCCCGGACCACTTACTCT
ATTTCTTGATTGAAAAACAACTAAATATTGATGACTAAAATGACTAAATATTGCTGAAGACGAGT
TCTCTGTCAGACTCTCTCTCCTGTTCCTGTTCCAGTGTTTTTTGAATCAAAGTAACTGCACAGGA
AGAAACCTATAGTGTTTGTTTCAATCCTAAAGAGAAAGGCTTAAGCCAAGATGCGTGAACTAACT
CTTTCCCCTTCTAAGTAACCTGATTTGATTGAATTAGTATTCTTTCTTTACCTTTAACTGTCAAA
GGATTCCTTCCTTAAAGCTTGATATTAGTTATTCGTTGCTTCTCG
Found at i:537120 original size:75 final size:76
Alignment explanation
Indices: 537025--537255 Score: 259
Period size: 75 Copynumber: 2.9 Consensus size: 76
537015 TACCTGAGGA
* *
537025 GTATCTTGTTACCTTTTGAGTATATGGGTACCTGATGAGTATGTATTGTATCTTGTTACCCGATG
1 GTATCTTGTTACCTTTTGAGTATATGGTTACCT-TTGAGTATGTATTGTATCTTGTTACCCGATG
537090 AGTATCTA-T-T
65 AGTATCTATTGT
* *
537100 GTATCTTGTTACCTTTTGAGTATCTGGTTACCTTTCTAGTATGTATTGTATCTTGTTACCCTTTC
1 GTATCTTGTTACCTTTTGAGTATATGGTTACCTTT-GAGTATGTATTGTATCTTGTTA-CC---C
** * *
537165 TTTCAGTATGTATTGT
61 GATGAGTATCTATTGT
* *
537181 GTATCTTGTTACCTTTTGAGTATATGGTTACCTTTTGAGTATGTATATTGTTTGTTTGTTACCCG
1 GTATCTTGTTACCTTTTGAGTATATGGTTACC-TTTGAGTATG--TATTGTAT-CTTGTTACCCG
*
537246 AAGAGTATCT
62 ATGAGTATCT
537256 TGTTACCCTT
Statistics
Matches: 128, Mismatches: 17, Indels: 17
0.79 0.10 0.10
Matches are distributed among these distances:
74 1 0.01
75 52 0.41
76 2 0.02
79 9 0.07
80 8 0.06
81 38 0.30
82 3 0.02
83 9 0.07
84 6 0.05
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.48
Consensus pattern (76 bp):
GTATCTTGTTACCTTTTGAGTATATGGTTACCTTTGAGTATGTATTGTATCTTGTTACCCGATGA
GTATCTATTGT
Left flanking sequence: Indices 536525 -- 537024
GCAATCCGGAGGCTCTACAGTGAGCTCTCATTGGTTCTTTCAACTTAGACTGAAGAGGAAGTGAA
GCTACGCTCATTCATTCACCTATCCGTTCACAAGTAAACACTAGACTCCTTGATTCATTCTCCTT
AACTACTTCACTTGACTAGAAGGAAGTGTCTTCGCTCGGATTACGAGTTAGCCGGTAACCAACCT
TTTGCTTATTCTCTGAATCTTTACAGTAGAGACTAACAAGGAAAGAAAAGAAGGATTAATCAGAC
TTGCCAAGAAAGAAAGAGACTTACTCCGAACAAGAACAAAGTAAAGAACCAAAGACTACTCTGCT
CTTCCTGCCCACCTCTCTACAACTACAACAAGGGTAACTGCTTCACTCTCTCACGAGCTACTGCA
TTCATTGAATCTGAAAGCTCTACTATTCATTCCTCTATTGCTGGAACCTTAATACTCTGGCGTCT
AGTCTATTACCTGAGGAGTATCTATTGTATCTTGTTACCTGAGGA
Right flanking sequence: Indices 537256 -- 537755
TGTTACCCTTTCAGTATGTATCTTGTTTGTTCCCTTTCTTTTCTAGTATATTGAGAAAGGAAAGA
TTGACTAAAGCTTTCCCTTAAACCTAAAGAACAAAGTCAAGACAAAAGCCAAAGAGTTTACTGTC
TTACTTACTCTTACTGTCTTTGAATAAAAGAAAAGAGGGTTCCGCGCTAGCTATCTATTTATCTA
TCTATCTATCCTTTCTTCTCTTGATTGATGATTAATTAACTTGCATATGAACACCTTATGCTTTC
TTTACAGTCTTTGTTCAAGTAAGGTAGACAGACTAAAGCTTCATTCACCTTTTCCCTTACTCTGT
AAATGTAATAGATGTTAGTTTACGAACTTCACTACTTATTCCTGAAGCAAGAGAAGATTCAATCA
CCTGTACTGTATGTCATTTACAGTTAAAGACTAGTTTTAGGAAGAGGAAAGACTGAAGCAACTAC
TTATTCATTCAATCCTCAAACAAGACAAGAAGACAAGAAGGAGGT
Found at i:537124 original size:28 final size:28
Alignment explanation
Indices: 537053--537112 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
537043 AGTATATGGG
* *
537053 TACCTGATGAGTATGTATTGTATCTTGT
1 TACCCGATGAGTATCTATTGTATCTTGT
537081 TACCCGATGAGTATCTATTGTATCTTGT
1 TACCCGATGAGTATCTATTGTATCTTGT
537109 TACC
1 TACC
537113 TTTTGAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (28 bp):
TACCCGATGAGTATCTATTGTATCTTGT
Left flanking sequence: Indices 536553 -- 537052
CATTGGTTCTTTCAACTTAGACTGAAGAGGAAGTGAAGCTACGCTCATTCATTCACCTATCCGTT
CACAAGTAAACACTAGACTCCTTGATTCATTCTCCTTAACTACTTCACTTGACTAGAAGGAAGTG
TCTTCGCTCGGATTACGAGTTAGCCGGTAACCAACCTTTTGCTTATTCTCTGAATCTTTACAGTA
GAGACTAACAAGGAAAGAAAAGAAGGATTAATCAGACTTGCCAAGAAAGAAAGAGACTTACTCCG
AACAAGAACAAAGTAAAGAACCAAAGACTACTCTGCTCTTCCTGCCCACCTCTCTACAACTACAA
CAAGGGTAACTGCTTCACTCTCTCACGAGCTACTGCATTCATTGAATCTGAAAGCTCTACTATTC
ATTCCTCTATTGCTGGAACCTTAATACTCTGGCGTCTAGTCTATTACCTGAGGAGTATCTATTGT
ATCTTGTTACCTGAGGAGTATCTTGTTACCTTTTGAGTATATGGG
Right flanking sequence: Indices 537113 -- 537612
TTTTGAGTATCTGGTTACCTTTCTAGTATGTATTGTATCTTGTTACCCTTTCTTTCAGTATGTAT
TGTGTATCTTGTTACCTTTTGAGTATATGGTTACCTTTTGAGTATGTATATTGTTTGTTTGTTAC
CCGAAGAGTATCTTGTTACCCTTTCAGTATGTATCTTGTTTGTTCCCTTTCTTTTCTAGTATATT
GAGAAAGGAAAGATTGACTAAAGCTTTCCCTTAAACCTAAAGAACAAAGTCAAGACAAAAGCCAA
AGAGTTTACTGTCTTACTTACTCTTACTGTCTTTGAATAAAAGAAAAGAGGGTTCCGCGCTAGCT
ATCTATTTATCTATCTATCTATCCTTTCTTCTCTTGATTGATGATTAATTAACTTGCATATGAAC
ACCTTATGCTTTCTTTACAGTCTTTGTTCAAGTAAGGTAGACAGACTAAAGCTTCATTCACCTTT
TCCCTTACTCTGTAAATGTAATAGATGTTAGTTTACGAACTTCAC
Found at i:537150 original size:28 final size:32
Alignment explanation
Indices: 537119--537196 Score: 101
Period size: 34 Copynumber: 2.5 Consensus size: 32
537109 TACCTTTTGA
*
537119 GTATCTGGTTACCTTTC-T-AGTATGTA-T-T
1 GTATCTTGTTACCTTTCTTCAGTATGTATTGT
537147 GTATCTTGTTACCCTTTCTTTCAGTATGTATTGT
1 GTATCTTGTTA-CCTTTC-TTCAGTATGTATTGT
537181 GTATCTTGTTACCTTT
1 GTATCTTGTTACCTTT
537197 TGAGTATATG
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
28 10 0.23
29 6 0.14
31 1 0.02
32 8 0.19
33 6 0.14
34 12 0.28
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53
Consensus pattern (32 bp):
GTATCTTGTTACCTTTCTTCAGTATGTATTGT
Left flanking sequence: Indices 536619 -- 537118
ACAAGTAAACACTAGACTCCTTGATTCATTCTCCTTAACTACTTCACTTGACTAGAAGGAAGTGT
CTTCGCTCGGATTACGAGTTAGCCGGTAACCAACCTTTTGCTTATTCTCTGAATCTTTACAGTAG
AGACTAACAAGGAAAGAAAAGAAGGATTAATCAGACTTGCCAAGAAAGAAAGAGACTTACTCCGA
ACAAGAACAAAGTAAAGAACCAAAGACTACTCTGCTCTTCCTGCCCACCTCTCTACAACTACAAC
AAGGGTAACTGCTTCACTCTCTCACGAGCTACTGCATTCATTGAATCTGAAAGCTCTACTATTCA
TTCCTCTATTGCTGGAACCTTAATACTCTGGCGTCTAGTCTATTACCTGAGGAGTATCTATTGTA
TCTTGTTACCTGAGGAGTATCTTGTTACCTTTTGAGTATATGGGTACCTGATGAGTATGTATTGT
ATCTTGTTACCCGATGAGTATCTATTGTATCTTGTTACCTTTTGA
Right flanking sequence: Indices 537197 -- 537696
TGAGTATATGGTTACCTTTTGAGTATGTATATTGTTTGTTTGTTACCCGAAGAGTATCTTGTTAC
CCTTTCAGTATGTATCTTGTTTGTTCCCTTTCTTTTCTAGTATATTGAGAAAGGAAAGATTGACT
AAAGCTTTCCCTTAAACCTAAAGAACAAAGTCAAGACAAAAGCCAAAGAGTTTACTGTCTTACTT
ACTCTTACTGTCTTTGAATAAAAGAAAAGAGGGTTCCGCGCTAGCTATCTATTTATCTATCTATC
TATCCTTTCTTCTCTTGATTGATGATTAATTAACTTGCATATGAACACCTTATGCTTTCTTTACA
GTCTTTGTTCAAGTAAGGTAGACAGACTAAAGCTTCATTCACCTTTTCCCTTACTCTGTAAATGT
AATAGATGTTAGTTTACGAACTTCACTACTTATTCCTGAAGCAAGAGAAGATTCAATCACCTGTA
CTGTATGTCATTTACAGTTAAAGACTAGTTTTAGGAAGAGGAAAG
Found at i:542597 original size:25 final size:27
Alignment explanation
Indices: 542559--542610 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
542549 GTAAAGATAG
542559 ATTCATTCTACTTA-C-TAACTCCTTA
1 ATTCATTCTACTTACCTTAACTCCTTA
*
542584 ATTCATTCTCCTTACCTTAACTCCTTA
1 ATTCATTCTACTTACCTTAACTCCTTA
542611 TTTATTAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 13 0.54
26 1 0.04
27 10 0.42
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (27 bp):
ATTCATTCTACTTACCTTAACTCCTTA
Left flanking sequence: Indices 542059 -- 542558
GCCTTCTTTTCGTGAAGAATAAAGATTAATGGATTGAACGAGGTAAGGTAAACACACCCCTACCT
ATTATTTATTCACAGTAAGTAAGTAAGTAAACAAAGACAGACTCAACCTTAACAAATCTTTCACC
CTCTCCTCTCTTATTCTATTAGCTGCTGACCGTAAGGAGGTAAAGTCAAGCTATTTGAAGAAGAA
CTAACCTTTCTTTCTTTACAGTAGAGGAAAGATTAATTAAATAAAGATTCATACATAATATAGTT
TACAGTCTTTGTTCTATAGAATGAAGGAGTTAGCAGCTTTAGCTTTGAAAGAGTAAGGCGTAAGA
AGAGAGAGAGAATGGGCCGGAACAGCCGTAAAGAAAGAAGAAGAAGAATCTGCCTTTCCTGTTGA
GTAAATCAAAGACTGAACCTCAACCCTGAGTTACTTCACCCTTGTTTTGTTATTCTAAGTAACTG
AAGAGAAAGCAAGAAAGAGATTAATGATCCTGAACGTAAAGATAG
Right flanking sequence: Indices 542611 -- 543110
TTTATTAAAGAACTAGGTAAAGCTTCTGTCAGTGAGTTTGCTTACTTTACTTACTCTGGGTTGAA
CGAACTATTCTTTCTCTGCCGTAACAACCAGAACAACCTCGGCTTCTTGATCTGATCCTACTTCT
GGAACTCTGACGGACCATTAATTAATTTATTCTATCCTATATAGGGGTAAAAGAAAGGTGTTTGA
TGGAAGGAACTGTCCCCTCGCTCGGGTTGAACTACTCTACTCTTCTCTGTTGTTCTTTACCTGCT
AGCTGTAACTGTAAACTGGCTGGGAAGAAGGGGAATCTTAGCTAGCTCGGGCTCTGATCTTTCTC
CTGACTACCTGACTGACTCTTACTACTCTTACTGACTTCATTCTTGTTATTGTGTGAGTTATTAT
TCTATTCTTTAACTGTAAACAAACAAGGGAAACTCTTGATTCCTTATTCTTTCTCCGAACCTATT
TCTCTTCTTTCCCGAGGTAAACTGATCATTAAGTCAAACAAACTC
Found at i:544914 original size:18 final size:18
Alignment explanation
Indices: 544891--544927 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
544881 TGAACAACCA
544891 ACTGCTTATTCATTCATT
1 ACTGCTTATTCATTCATT
544909 ACTGCTTATTCATTCATT
1 ACTGCTTATTCATTCATT
544927 A
1 A
544928 GAGTTTACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.22, G:0.05, T:0.49
Consensus pattern (18 bp):
ACTGCTTATTCATTCATT
Left flanking sequence: Indices 544391 -- 544890
TCCTGCTTAACTGTTCTGGCGTAACTGCTCCTTCCTTCCTTCCTGCTTGCTGGGTTAACTGCCTT
TCTTTCTTCTCCTGCTGGCTTAAAACTGCTCCGCCTGTTCTCCTGTCCTGCTTATAACTGCTCTC
TCCGCCTGCTCCTGCTTGGTTGGTTTCTTTGCTGGCTTGTTTGTTCTCCTGCTTGCTTTGTTGGC
TTAACTGCTCTCTCTCTCTCTGCCTTGCCTGTTCTTTCTGTTCATTCTTCCTGCTTGCTGTCTTC
ATCCTTTTCCTGCCTGCGTAACCTGAATCTTCTCTGTCTGAGTTTACAGTCTTTGTTTGATTGAA
GGTAGACTCCGGAAGAAGAAGAGAATGTATTGTATTGAAAGAGTAAGTCAAGCCTTACGCCCTTA
AGAAAGAGAGAGAACTCATAGTATCTCTATCTCTAGTATCTATGGATAACTCACTCTTGCCCCCT
AGTACGTAGGATATGGATTCGCTGACTTGTAAGACTGAACAACCA
Right flanking sequence: Indices 544928 -- 545427
GAGTTTACGTAACTTGCTTTCTTGCTTGCTAGCTCGGGTTAACTGCTTGCTTTGCTCTTTCTTTT
CTCTCTCTTTCCTTGCTGGCTTAACTCTTTTCTTCGTTCTCTTCTCTGTCTGTTCTCTGTCTGCG
TAACCTGTCTTGTCTTTGTCTGTCTTACCTGCTTGCTCTGTCTGCTCCTTCCCTTCCTGCGTAAC
TGCTCTCTTTCTCTGTCTTTCCTTTCGTTGTCTTCTCTGTCTGCTTGTTCCTTCCTGGTTGCTTT
GCGCTTTGCGCTTTCTTTTCTCTCTTCTCTCTCCTTTCTCTTTCCTGCGTAACAGCTTGCTTTGC
TGGCTTAACTGCTGCTCTCTCCTCTGCTCTCCTCTCTTTTCTTCTCTTCGTTCGTTCTCTTCGTT
CTCTCTCTTCTTTTGTTCTCTTCTCTGTCTGCGCGTAACCTGTCTTGTCTTTCTTTGTCTGTTTG
ACTTACTTTACCTGGTTGCTCTCTCTGTCTGCTCTCCTCTGCTGT
Found at i:545312 original size:13 final size:13
Alignment explanation
Indices: 545294--545340 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
545284 CTCTCTTTTC
545294 TTCTCTTCGTTCG
1 TTCTCTTCGTTCG
545307 TTCTCTTCGTTC-
1 TTCTCTTCGTTCG
* *
545319 TCTCTCTTCTTTTG
1 T-TCTCTTCGTTCG
545333 TTCTCTTC
1 TTCTCTTC
545341 TCTGTCTGCG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 1 0.03
13 28 0.93
14 1 0.03
ACGTcount: A:0.00, C:0.32, G:0.09, T:0.60
Consensus pattern (13 bp):
TTCTCTTCGTTCG
Left flanking sequence: Indices 544794 -- 545293
ACTCATAGTATCTCTATCTCTAGTATCTATGGATAACTCACTCTTGCCCCCTAGTACGTAGGATA
TGGATTCGCTGACTTGTAAGACTGAACAACCAACTGCTTATTCATTCATTACTGCTTATTCATTC
ATTAGAGTTTACGTAACTTGCTTTCTTGCTTGCTAGCTCGGGTTAACTGCTTGCTTTGCTCTTTC
TTTTCTCTCTCTTTCCTTGCTGGCTTAACTCTTTTCTTCGTTCTCTTCTCTGTCTGTTCTCTGTC
TGCGTAACCTGTCTTGTCTTTGTCTGTCTTACCTGCTTGCTCTGTCTGCTCCTTCCCTTCCTGCG
TAACTGCTCTCTTTCTCTGTCTTTCCTTTCGTTGTCTTCTCTGTCTGCTTGTTCCTTCCTGGTTG
CTTTGCGCTTTGCGCTTTCTTTTCTCTCTTCTCTCTCCTTTCTCTTTCCTGCGTAACAGCTTGCT
TTGCTGGCTTAACTGCTGCTCTCTCCTCTGCTCTCCTCTCTTTTC
Right flanking sequence: Indices 545341 -- 545840
TCTGTCTGCGCGTAACCTGTCTTGTCTTTCTTTGTCTGTTTGACTTACTTTACCTGGTTGCTCTC
TCTGTCTGCTCTCCTCTGCTGTTGTCTGTGTAACCTGTCTTGTTTGTCTTGTCTTGTCTGTCTGA
CTTACCTTACCTGGTTGCTTGCTCTGCCTGCTCTTGCTCTGGTCTGTCTGCTCGCTCGCTCCTCT
CCTGGTTGCTCTGTCTGTATGTAACCTTAGCTTAAGCTTAACTGCTGCTGGCTGCTCTGCGCTCT
GCTCTGCTCTGCTTCCCCTGCCTGCCTGGCTTGCCTGAAGCTTGTCTGTTTGTTTGTTTGTCTGT
CTGAGTTTACGTTTACAGTCTTTGTTTGAAGGTGGACTCTGTAAGAAGAAGAGGGGAATGGATTG
TGTAAGAAGGATAACCTTATTCTGTCTTCCCTGTCGAAGAAGAGAATGTATTGTATTCAGGCTAA
CCTTCTTTTGTCTTCCCTTAAGAAGGAGAGAAGAGAGTATTGTAC
Found at i:545335 original size:26 final size:25
Alignment explanation
Indices: 545291--545340 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
545281 CTCCTCTCTT
545291 TTCTTCTCTTCGTTCGTTCTCTTCG
1 TTCTTCTCTTCGTTCGTTCTCTTCG
* *
545316 TTCTCTCTCTTCTTTTGTTCTCTTC
1 TTCT-TCTCTTCGTTCGTTCTCTTC
545341 TCTGTCTGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.00, C:0.32, G:0.08, T:0.60
Consensus pattern (25 bp):
TTCTTCTCTTCGTTCGTTCTCTTCG
Left flanking sequence: Indices 544791 -- 545290
AGAACTCATAGTATCTCTATCTCTAGTATCTATGGATAACTCACTCTTGCCCCCTAGTACGTAGG
ATATGGATTCGCTGACTTGTAAGACTGAACAACCAACTGCTTATTCATTCATTACTGCTTATTCA
TTCATTAGAGTTTACGTAACTTGCTTTCTTGCTTGCTAGCTCGGGTTAACTGCTTGCTTTGCTCT
TTCTTTTCTCTCTCTTTCCTTGCTGGCTTAACTCTTTTCTTCGTTCTCTTCTCTGTCTGTTCTCT
GTCTGCGTAACCTGTCTTGTCTTTGTCTGTCTTACCTGCTTGCTCTGTCTGCTCCTTCCCTTCCT
GCGTAACTGCTCTCTTTCTCTGTCTTTCCTTTCGTTGTCTTCTCTGTCTGCTTGTTCCTTCCTGG
TTGCTTTGCGCTTTGCGCTTTCTTTTCTCTCTTCTCTCTCCTTTCTCTTTCCTGCGTAACAGCTT
GCTTTGCTGGCTTAACTGCTGCTCTCTCCTCTGCTCTCCTCTCTT
Right flanking sequence: Indices 545341 -- 545840
TCTGTCTGCGCGTAACCTGTCTTGTCTTTCTTTGTCTGTTTGACTTACTTTACCTGGTTGCTCTC
TCTGTCTGCTCTCCTCTGCTGTTGTCTGTGTAACCTGTCTTGTTTGTCTTGTCTTGTCTGTCTGA
CTTACCTTACCTGGTTGCTTGCTCTGCCTGCTCTTGCTCTGGTCTGTCTGCTCGCTCGCTCCTCT
CCTGGTTGCTCTGTCTGTATGTAACCTTAGCTTAAGCTTAACTGCTGCTGGCTGCTCTGCGCTCT
GCTCTGCTCTGCTTCCCCTGCCTGCCTGGCTTGCCTGAAGCTTGTCTGTTTGTTTGTTTGTCTGT
CTGAGTTTACGTTTACAGTCTTTGTTTGAAGGTGGACTCTGTAAGAAGAAGAGGGGAATGGATTG
TGTAAGAAGGATAACCTTATTCTGTCTTCCCTGTCGAAGAAGAGAATGTATTGTATTCAGGCTAA
CCTTCTTTTGTCTTCCCTTAAGAAGGAGAGAAGAGAGTATTGTAC
Found at i:545811 original size:51 final size:52
Alignment explanation
Indices: 545737--545885 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 52
545727 ATTGTGTAAG
* * * **
545737 AAGGATAACCTTATTCTGTCTTCCCTGTCGAAGA-AGAGA-ATGTATTGTATT
1 AAGGCTAACCTTCTTTTGTCTTCCCTGTCGAAGAGAGAGAGA-GTATTGTACA
* *
545788 CAGGCTAACCTTCTTTTGTCTTCCCT-TAAGAAGGAGAGAAGAGAGTATTGTACA
1 AAGGCTAACCTTCTTTTGTCTTCCCTGT-CGAA-GAGAG-AGAGAGTATTGTACA
545842 AAGGCTAACCTTCTTTTGTCTTCCCTGTCGAAAGAGAGAGAGAG
1 AAGGCTAACCTTCTTTTGTCTTCCCTGTCG-AAGAGAGAGAGAG
545886 AACTAATAAC
Statistics
Matches: 82, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
50 1 0.01
51 25 0.30
52 2 0.02
53 8 0.10
54 42 0.51
55 4 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (52 bp):
AAGGCTAACCTTCTTTTGTCTTCCCTGTCGAAGAGAGAGAGAGTATTGTACA
Left flanking sequence: Indices 545237 -- 545736
TAACAGCTTGCTTTGCTGGCTTAACTGCTGCTCTCTCCTCTGCTCTCCTCTCTTTTCTTCTCTTC
GTTCGTTCTCTTCGTTCTCTCTCTTCTTTTGTTCTCTTCTCTGTCTGCGCGTAACCTGTCTTGTC
TTTCTTTGTCTGTTTGACTTACTTTACCTGGTTGCTCTCTCTGTCTGCTCTCCTCTGCTGTTGTC
TGTGTAACCTGTCTTGTTTGTCTTGTCTTGTCTGTCTGACTTACCTTACCTGGTTGCTTGCTCTG
CCTGCTCTTGCTCTGGTCTGTCTGCTCGCTCGCTCCTCTCCTGGTTGCTCTGTCTGTATGTAACC
TTAGCTTAAGCTTAACTGCTGCTGGCTGCTCTGCGCTCTGCTCTGCTCTGCTTCCCCTGCCTGCC
TGGCTTGCCTGAAGCTTGTCTGTTTGTTTGTTTGTCTGTCTGAGTTTACGTTTACAGTCTTTGTT
TGAAGGTGGACTCTGTAAGAAGAAGAGGGGAATGGATTGTGTAAG
Right flanking sequence: Indices 545886 -- 546385
AACTAATAACTAGTATCTCTAGATAACTAATACCCTGTCCCCCTAATACTCTATTTATTCGTTGA
ATTGTAAGACTGAACTCAAGACTAATTCATTAGAGTTTCCGTAACTTGCTGCTTGCTTTCTTTCT
TTCTTTTCTTGCTTGCTAGCTCGGGCTGTCTCTGCTCTGTCTTTCGTTCTCTTCGTTCTCTTCCT
TCTCTTTCTTCTTGCTTGCTTGCTGCTTGCTTTCTATTCTACTCTTTTAGATGAGAGAGAAAGTG
TTTCATTTCAAGCCTCAAGTAAAGATGCATATGAGAGTTTCCGGGCCAGGCTAGGTGTTGGAAGG
AACAGGCCTGGAGTCAGACTCTTTCTTCACCTTTACTGTGTTTGTTTGAAGAAGGTAGACTCAAT
CAAGCCAAGGAGGATGAATTCATTAGAGTGAACTGGCAACTCAACTCCTTATTCATTAGAGTTTA
CGGAACAGGCTAGGTTGGAAGAGAACAAACGATGTCGAGTCAAGC
Found at i:546466 original size:46 final size:46
Alignment explanation
Indices: 546407--546542 Score: 147
Period size: 46 Copynumber: 2.9 Consensus size: 46
546397 AGAGGAGAGT
*
546407 GTATTGT-A-AGAAGGATAGCCTACTTCTGTCTTCCCTAAGAAAGA
1 GTATTGTAAGAGAAGGATAACCTACTTCTGTCTTCCCTAAGAAAGA
*
546451 GTATTGTAAGAGAAGGATAACCTCCTTCTGTCTTCCCTACTAAGAAAGA
1 GTATTGTAAGAGAAGGATAACCTACTTCTGTCTT-CC--CTAAGAAAGA
*
546500 ATA-T-TAATTGTCA-AAGGATAACCTACTTCTGTCTTCCCTAAGA
1 GTATTGTAA--G--AGAAGGATAACCTACTTCTGTCTTCCCTAAGA
546543 GAACTACAAG
Statistics
Matches: 79, Mismatches: 4, Indels: 15
0.81 0.04 0.15
Matches are distributed among these distances:
44 7 0.09
45 1 0.01
46 22 0.28
47 11 0.14
48 1 0.01
49 15 0.19
50 21 0.27
51 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (46 bp):
GTATTGTAAGAGAAGGATAACCTACTTCTGTCTTCCCTAAGAAAGA
Left flanking sequence: Indices 545907 -- 546406
GATAACTAATACCCTGTCCCCCTAATACTCTATTTATTCGTTGAATTGTAAGACTGAACTCAAGA
CTAATTCATTAGAGTTTCCGTAACTTGCTGCTTGCTTTCTTTCTTTCTTTTCTTGCTTGCTAGCT
CGGGCTGTCTCTGCTCTGTCTTTCGTTCTCTTCGTTCTCTTCCTTCTCTTTCTTCTTGCTTGCTT
GCTGCTTGCTTTCTATTCTACTCTTTTAGATGAGAGAGAAAGTGTTTCATTTCAAGCCTCAAGTA
AAGATGCATATGAGAGTTTCCGGGCCAGGCTAGGTGTTGGAAGGAACAGGCCTGGAGTCAGACTC
TTTCTTCACCTTTACTGTGTTTGTTTGAAGAAGGTAGACTCAATCAAGCCAAGGAGGATGAATTC
ATTAGAGTGAACTGGCAACTCAACTCCTTATTCATTAGAGTTTACGGAACAGGCTAGGTTGGAAG
AGAACAAACGATGTCGAGTCAAGCCTTCCCTGTCGAGAGGAGAGT
Right flanking sequence: Indices 546543 -- 547042
GAACTACAAGAGAACTACCAAGAGAAAGAACTACTAGGAGAAAGAACTACAAGAACTACTAGAAC
TAATAATTAGTATCTATAGATAACTAATACCCTGTCCCCCTAATACTCTATTTCTTCTCTTTTTC
TTGTCTTGTTCTTGTCTTTCTCCTCTCTCTGCTGCCTACTTCCTCTTTCACCTTTTCCGGTAAGG
TAAGACGAAACAAGATTCATTCTTTAACTAATCCTACTCCTCTCTCCTCTGCCTACTCCTTACTC
CTACTCTCCTTACTCCTACTCTACTTACTTGACTCCTTTTGTCTAGTGTATTACCTGACCTATAC
TATACATACTTCTTGCTTCTTTCACCTATTCTTGAACTGTAAACTAAGACTAAAGCGAAACCCTG
CTGTACTATTCTTCTTTCACGATATTCCCTTCCGGAACAAGGTGAAAGTCAAGCATCTTCCCTTC
TGTCCTGTCCTTCTGTTCTCTGTGCTTTCTTTCCTCTGTCTGATT
Found at i:546555 original size:11 final size:12
Alignment explanation
Indices: 546539--546568 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
546529 TGTCTTCCCT
546539 AAGAGAACTA-C
1 AAGAGAACTACC
546550 AAGAGAACTACC
1 AAGAGAACTACC
546562 AAGAGAA
1 AAGAGAA
546569 AGAACTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.57, C:0.17, G:0.20, T:0.07
Consensus pattern (12 bp):
AAGAGAACTACC
Left flanking sequence: Indices 546039 -- 546538
GGCTGTCTCTGCTCTGTCTTTCGTTCTCTTCGTTCTCTTCCTTCTCTTTCTTCTTGCTTGCTTGC
TGCTTGCTTTCTATTCTACTCTTTTAGATGAGAGAGAAAGTGTTTCATTTCAAGCCTCAAGTAAA
GATGCATATGAGAGTTTCCGGGCCAGGCTAGGTGTTGGAAGGAACAGGCCTGGAGTCAGACTCTT
TCTTCACCTTTACTGTGTTTGTTTGAAGAAGGTAGACTCAATCAAGCCAAGGAGGATGAATTCAT
TAGAGTGAACTGGCAACTCAACTCCTTATTCATTAGAGTTTACGGAACAGGCTAGGTTGGAAGAG
AACAAACGATGTCGAGTCAAGCCTTCCCTGTCGAGAGGAGAGTGTATTGTAAGAAGGATAGCCTA
CTTCTGTCTTCCCTAAGAAAGAGTATTGTAAGAGAAGGATAACCTCCTTCTGTCTTCCCTACTAA
GAAAGAATATTAATTGTCAAAGGATAACCTACTTCTGTCTTCCCT
Right flanking sequence: Indices 546569 -- 547068
AGAACTACTAGGAGAAAGAACTACAAGAACTACTAGAACTAATAATTAGTATCTATAGATAACTA
ATACCCTGTCCCCCTAATACTCTATTTCTTCTCTTTTTCTTGTCTTGTTCTTGTCTTTCTCCTCT
CTCTGCTGCCTACTTCCTCTTTCACCTTTTCCGGTAAGGTAAGACGAAACAAGATTCATTCTTTA
ACTAATCCTACTCCTCTCTCCTCTGCCTACTCCTTACTCCTACTCTCCTTACTCCTACTCTACTT
ACTTGACTCCTTTTGTCTAGTGTATTACCTGACCTATACTATACATACTTCTTGCTTCTTTCACC
TATTCTTGAACTGTAAACTAAGACTAAAGCGAAACCCTGCTGTACTATTCTTCTTTCACGATATT
CCCTTCCGGAACAAGGTGAAAGTCAAGCATCTTCCCTTCTGTCCTGTCCTTCTGTTCTCTGTGCT
TTCTTTCCTCTGTCTGATTGAAGTAAATAGGCTGTATGGATTCTC
Found at i:546574 original size:16 final size:16
Alignment explanation
Indices: 546553--546596 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
546543 GAACTACAAG
546553 AGAACTACCAAGAGAA
1 AGAACTACCAAGAGAA
* *
546569 AGAACTACTAGGAGAA
1 AGAACTACCAAGAGAA
546585 AGAACTA-CAAGA
1 AGAACTACCAAGA
546597 ACTACTAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 3 0.12
16 21 0.88
ACGTcount: A:0.55, C:0.16, G:0.20, T:0.09
Consensus pattern (16 bp):
AGAACTACCAAGAGAA
Left flanking sequence: Indices 546053 -- 546552
TGTCTTTCGTTCTCTTCGTTCTCTTCCTTCTCTTTCTTCTTGCTTGCTTGCTGCTTGCTTTCTAT
TCTACTCTTTTAGATGAGAGAGAAAGTGTTTCATTTCAAGCCTCAAGTAAAGATGCATATGAGAG
TTTCCGGGCCAGGCTAGGTGTTGGAAGGAACAGGCCTGGAGTCAGACTCTTTCTTCACCTTTACT
GTGTTTGTTTGAAGAAGGTAGACTCAATCAAGCCAAGGAGGATGAATTCATTAGAGTGAACTGGC
AACTCAACTCCTTATTCATTAGAGTTTACGGAACAGGCTAGGTTGGAAGAGAACAAACGATGTCG
AGTCAAGCCTTCCCTGTCGAGAGGAGAGTGTATTGTAAGAAGGATAGCCTACTTCTGTCTTCCCT
AAGAAAGAGTATTGTAAGAGAAGGATAACCTCCTTCTGTCTTCCCTACTAAGAAAGAATATTAAT
TGTCAAAGGATAACCTACTTCTGTCTTCCCTAAGAGAACTACAAG
Right flanking sequence: Indices 546597 -- 547096
ACTACTAGAACTAATAATTAGTATCTATAGATAACTAATACCCTGTCCCCCTAATACTCTATTTC
TTCTCTTTTTCTTGTCTTGTTCTTGTCTTTCTCCTCTCTCTGCTGCCTACTTCCTCTTTCACCTT
TTCCGGTAAGGTAAGACGAAACAAGATTCATTCTTTAACTAATCCTACTCCTCTCTCCTCTGCCT
ACTCCTTACTCCTACTCTCCTTACTCCTACTCTACTTACTTGACTCCTTTTGTCTAGTGTATTAC
CTGACCTATACTATACATACTTCTTGCTTCTTTCACCTATTCTTGAACTGTAAACTAAGACTAAA
GCGAAACCCTGCTGTACTATTCTTCTTTCACGATATTCCCTTCCGGAACAAGGTGAAAGTCAAGC
ATCTTCCCTTCTGTCCTGTCCTTCTGTTCTCTGTGCTTTCTTTCCTCTGTCTGATTGAAGTAAAT
AGGCTGTATGGATTCTCAAGTGTTTCTCAACTCCTTATAAATTCT
Found at i:546813 original size:15 final size:15
Alignment explanation
Indices: 546793--546831 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
546783 CCTCTGCCTA
546793 CTCCTTACTCCTACT
1 CTCCTTACTCCTACT
546808 CTCCTTACTCCTACT
1 CTCCTTACTCCTACT
*
546823 CTACTTACT
1 CTCCTTACT
546832 TGACTCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.41
Consensus pattern (15 bp):
CTCCTTACTCCTACT
Left flanking sequence: Indices 546293 -- 546792
ATTCATTAGAGTGAACTGGCAACTCAACTCCTTATTCATTAGAGTTTACGGAACAGGCTAGGTTG
GAAGAGAACAAACGATGTCGAGTCAAGCCTTCCCTGTCGAGAGGAGAGTGTATTGTAAGAAGGAT
AGCCTACTTCTGTCTTCCCTAAGAAAGAGTATTGTAAGAGAAGGATAACCTCCTTCTGTCTTCCC
TACTAAGAAAGAATATTAATTGTCAAAGGATAACCTACTTCTGTCTTCCCTAAGAGAACTACAAG
AGAACTACCAAGAGAAAGAACTACTAGGAGAAAGAACTACAAGAACTACTAGAACTAATAATTAG
TATCTATAGATAACTAATACCCTGTCCCCCTAATACTCTATTTCTTCTCTTTTTCTTGTCTTGTT
CTTGTCTTTCTCCTCTCTCTGCTGCCTACTTCCTCTTTCACCTTTTCCGGTAAGGTAAGACGAAA
CAAGATTCATTCTTTAACTAATCCTACTCCTCTCTCCTCTGCCTA
Right flanking sequence: Indices 546832 -- 547331
TGACTCCTTTTGTCTAGTGTATTACCTGACCTATACTATACATACTTCTTGCTTCTTTCACCTAT
TCTTGAACTGTAAACTAAGACTAAAGCGAAACCCTGCTGTACTATTCTTCTTTCACGATATTCCC
TTCCGGAACAAGGTGAAAGTCAAGCATCTTCCCTTCTGTCCTGTCCTTCTGTTCTCTGTGCTTTC
TTTCCTCTGTCTGATTGAAGTAAATAGGCTGTATGGATTCTCAAGTGTTTCTCAACTCCTTATAA
ATTCTCCTTCCCCTGAGTCTCTATTCTATTCCTTTCTTGCTTTAACTCGTTAAATAGGTGGTTAA
GGTTAAAGCATCTTCCCTTCTGTCCTGAACTATTACTTCTTTCACTCTTTCAGAAGGTAAAGCAT
ATGAATGAACTAGCTCTTTTCTTTCACCTATTGATTATTCTTAAGACTCAATGAAAGAGAAGCTG
ATGAACCTGCCCCTGCTATCTATTAGCATTAATTCCTTACCTTCC
Found at i:546837 original size:20 final size:21
Alignment explanation
Indices: 546791--546839 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
546781 CTCCTCTGCC
*
546791 TACTCCTTACTCCTACTCTCCT
1 TACTCC-TACTCCTACTCTACT
546813 TACTCCTACT-CTACT-TACT
1 TACTCCTACTCCTACTCTACT
546832 TGACTCCT
1 T-ACTCCT
546840 TTTGTCTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 4 0.16
20 11 0.44
21 4 0.16
22 6 0.24
ACGTcount: A:0.16, C:0.41, G:0.02, T:0.41
Consensus pattern (21 bp):
TACTCCTACTCCTACTCTACT
Left flanking sequence: Indices 546291 -- 546790
GAATTCATTAGAGTGAACTGGCAACTCAACTCCTTATTCATTAGAGTTTACGGAACAGGCTAGGT
TGGAAGAGAACAAACGATGTCGAGTCAAGCCTTCCCTGTCGAGAGGAGAGTGTATTGTAAGAAGG
ATAGCCTACTTCTGTCTTCCCTAAGAAAGAGTATTGTAAGAGAAGGATAACCTCCTTCTGTCTTC
CCTACTAAGAAAGAATATTAATTGTCAAAGGATAACCTACTTCTGTCTTCCCTAAGAGAACTACA
AGAGAACTACCAAGAGAAAGAACTACTAGGAGAAAGAACTACAAGAACTACTAGAACTAATAATT
AGTATCTATAGATAACTAATACCCTGTCCCCCTAATACTCTATTTCTTCTCTTTTTCTTGTCTTG
TTCTTGTCTTTCTCCTCTCTCTGCTGCCTACTTCCTCTTTCACCTTTTCCGGTAAGGTAAGACGA
AACAAGATTCATTCTTTAACTAATCCTACTCCTCTCTCCTCTGCC
Right flanking sequence: Indices 546840 -- 547339
TTTGTCTAGTGTATTACCTGACCTATACTATACATACTTCTTGCTTCTTTCACCTATTCTTGAAC
TGTAAACTAAGACTAAAGCGAAACCCTGCTGTACTATTCTTCTTTCACGATATTCCCTTCCGGAA
CAAGGTGAAAGTCAAGCATCTTCCCTTCTGTCCTGTCCTTCTGTTCTCTGTGCTTTCTTTCCTCT
GTCTGATTGAAGTAAATAGGCTGTATGGATTCTCAAGTGTTTCTCAACTCCTTATAAATTCTCCT
TCCCCTGAGTCTCTATTCTATTCCTTTCTTGCTTTAACTCGTTAAATAGGTGGTTAAGGTTAAAG
CATCTTCCCTTCTGTCCTGAACTATTACTTCTTTCACTCTTTCAGAAGGTAAAGCATATGAATGA
ACTAGCTCTTTTCTTTCACCTATTGATTATTCTTAAGACTCAATGAAAGAGAAGCTGATGAACCT
GCCCCTGCTATCTATTAGCATTAATTCCTTACCTTCCCCTTTCTT
Found at i:549414 original size:15 final size:15
Alignment explanation
Indices: 549396--549425 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
549386 GCACCTGAAA
549396 GTGGAATCCCTAAAG
1 GTGGAATCCCTAAAG
549411 GTGGAATCCCTAAAG
1 GTGGAATCCCTAAAG
549426 AAAGGCTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (15 bp):
GTGGAATCCCTAAAG
Left flanking sequence: Indices 548896 -- 549395
GGAGTTCACGATTGTTTGATAGCTCGCTGCGTGACTTTCTGGCTGTTAAACCCTGAGGGATGTAG
CTAACTAAGGCAGTCTGGATGCTAGCCAAGAGCGGAGGTTTGTTTTCAACGCCTTGCCTGCAAGC
TTTATGAGATTGTAGCTTTCTTCTATTTACAGCTCTAAAATGGATAGCGTTATAGGTATAGGTGG
AGTCCTTCCTGACTTTGAGTCTCAACACTTATAAGTTCTTTAGTATGAAGGTAGCTTGGCTCACT
TCTGATAGTAAACGTCAGTCTCATTCCCTGGGCTAGGATCGGCTACTGTTGGGATCGGTCCGGCA
GGAAGGAAAGCTAATCGGCTGAGCAAAGAAGGTTCTTCCACGTACTGAAAGAGTTAAAGCATTGA
AATGCAGTCATGTGTCAACGCCTTTCTCCATTAAAGAAGATCGGAGTCGTGAACAGTAAAAGCAG
ATTCTTGGCAAAACCTTGCATCAAGAGGAAGTCCCGCACCTGAAA
Right flanking sequence: Indices 549426 -- 549925
AAAGGCTCATCCCGCGCTTGGGTACTTCATTTTGGTTATTCAATCTCTCAAGAAAAAATGGTTGA
ATCTTAGTCAACTGAGTGAATGCAGAATGATTGATAGCTCTCTACAAGCTCTTGGCACTCTACTT
AAGGAAGCGAAGCAACCACTTCTCCCCGGCACAGGCAAGAGGGATCCATTGAGAGGGCTACCCGC
GTATGAGATTGAGAGAGAGGCGGGGGATGATCAAATATGGTTAGACTGATTTCTTTCCAATAAGG
AAGGGGGAATCAGCTTCATTCAATGCCAGTATCTCTCTCAGCTGCAAGAAGATCAACTGCATTTC
TATTTTGGTTTTAGTCGGCCAGGAGTTCGGAATCGGCAAGAGAGAAAGAGAAGACGTTCGTGCTG
GGAAGCCGGGCCCTTTACATAGGCTTTTCGAAGTAGCTGCAATTGAATGAATGCGTATCAGCTGT
GATTGAATCAGTAAGCGCTGCAATATCCATCTTTCTTGGTCTTCA
Found at i:551235 original size:35 final size:36
Alignment explanation
Indices: 551142--551247 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 36
551132 TCGCCCTCTC
* * * * *
551142 ACCTCGTAACCTCGGTTTCCCAATTTCATTGCCTTA
1 ACCTCCTAAACTCGGTTTCACAATTTCATTTCCTGA
*
551178 ACCTCGTAAACTCGGTTTCACAATTTCATTTCCTGA
1 ACCTCCTAAACTCGGTTTCACAATTTCATTTCCTGA
***
551214 ACCTCCT-CTGTCGGTTTCACAATTTCATTTCCTG
1 ACCTCCTAAACTCGGTTTCACAATTTCATTTCCTG
551248 CCCCTGATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
35 24 0.39
36 38 0.61
ACGTcount: A:0.20, C:0.31, G:0.11, T:0.38
Consensus pattern (36 bp):
ACCTCCTAAACTCGGTTTCACAATTTCATTTCCTGA
Left flanking sequence: Indices 550642 -- 551141
TCTAATGATATCCCACGGGTAAGCCGTTAAGTGAAGAGAATGCTATGAGTTCACAAGAGTAACTA
GAAGGTGAATGAAAAGAATCTAGCCCTGAGCAATAAGGGTCCGGAAGCAAAGGTTATTCCAATCC
CGGCTTTTGTGTTGGTTGGGAAGTATGCTCTTGCGTCCACTGCTGCTAATGAAGTTCCAGCTGTC
AATGTGGTTAAGTTAGACATCCCCGACGTCTGGGTATCCCCATTGATGAATTCATACCATGAGAG
TATGGATGTGATCTGTAGTTATTGCAGTGTCAAATTCCTTTGCTTTCTCGGTATCTGACCTTGTA
GCAGCAAATCAAAATGATCATAACATACAATAGTAGTCAAAACAAGAAATGGTACCACTGTCGTT
TGAAGAGGTAGAATGGGGTTTTCCACTGTAAACAGTCATAGTGTCACGCTGACCTCGAGCTAGCT
ACGAAGAGCACTCCTCTCGCTCCTCTCCTTTACCTTCGCCCTCTC
Right flanking sequence: Indices 551248 -- 551747
CCCCTGATTTCACTCTGTAATAGGTGTTTATTTGTTTACGAACTTCTCTCTTTCACCTTCTTTCT
TTAACTGTAAACAGGGAATCTTAACTATTTTCCTATCCCCCTTTCTTTTCTCGGTTTCATGTCTT
CGACCCTTATACTTCTGTTCGTCTTCGTTATTCTTTCTTTTACAGTAACCAAGGTAAATAGGTTC
ATTAGCTAATTCATTTACTGTGCCCTTCTTTCATTCATAAGGTAAATAGGCTGGACTGGCTAGAC
GGATTCACCTATCTCTTGATCAGATCCTTCACCTTTCTTGAACTGTAAACGAAGACAGACTGAAC
CGAAACCTTATTCTTGAACTCCTTTTTACAGTGAGGGATATTAATTAGCTGGCTGCTTTGAAAGA
CGAAAACCAGACAAGATGCATTCTCCGGGGAACCCATATTACCTGACCCTGAACCTGATATTGAA
CTTCTCTTTCCGCTTATGAATCAAGTGTTGAAAGGAAGGACTCAA
Found at i:553550 original size:29 final size:29
Alignment explanation
Indices: 553515--553576 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
553505 AAACTCCTGA
553515 ACCTGTCGGTTTCACAGCTTCGCTCCTTC
1 ACCTGTCGGTTTCACAGCTTCGCTCCTTC
553544 ACCTGTCGGTTTCACAGCTTCGCTCCTTC
1 ACCTGTCGGTTTCACAGCTTCGCTCCTTC
553573 ACCT
1 ACCT
553577 ATTCATTGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.11, C:0.39, G:0.16, T:0.34
Consensus pattern (29 bp):
ACCTGTCGGTTTCACAGCTTCGCTCCTTC
Left flanking sequence: Indices 553015 -- 553514
CACCTACACCTGACGAGAATGTATGTAAGAAAGAATCATTCTCCTGCCTGAACCTGCTGCCTATG
TTATTCACTCGGTCAAGCTAGCACTAAGAAAAAGGAAAGACTGACAGAAGGATGAATGAGAGTGA
AGTTGACTCCTCTCCCTATTTTTTGGGCTATGCCATTTTCCCGGTATTTGAGGTCATTGAACTCC
TTTTCCTCTCTCTATTCTATTGTATTAGCATCAGTTCTTGTTCTTTCCCTTCTTTCACTGTAAGC
ACTGGCTGGGAATCTGAGCTCTGTCTCTGTCTGATCTTTCTCCTTATGAATCAAGTGGTTGAAAG
GAAAGACTGACCTCAAGAATTAATGAGACTTAACTACTGACCCTGAACCTCTACAACTCGGTTTC
ACAATTTCATTTCCTGCCCCTCTGCCTTCTTTGACTCCCTTTCCTCTATTACAAGCCAAGACTCC
TTATGCATTCTCCGATTCCTTCTTGATAGTAAAGGAAACTCCTGA
Right flanking sequence: Indices 553577 -- 554076
ATTCATTGTCGGTCTTACAATTCCATTGCTGATCCTCTCCTTTACAGTCGAGCCGCTGAAAGAAA
ATCTTTTGTATCCTATATAGGGGTAAAAGTTCGTAAGAGGTTTTTCACTAATAGCTGGAGCAAAA
AGCAAATAAATTCTATCCAGCATAGGGGTCAAACCTTGTCATAGCTTTTTCCCTTAATAGCTGAA
GCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTGCACTTTTTCCCTTAAGGAA
AGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTTCTCTTTTTCCCTTAA
GGAAAGCAGCTTCAAGAAATTCTTTTCTATCTTTCCCCTATTTTTCGGGATAAAATCCCGGTATT
TAGGGCAGAGGTAATGTTGAAGTCAATCCTTCAGATTCATGAGAGTTAACTGTCAGTCAATCCTC
AAGATTCATGAAACTGTAAACACGACTTATTCATTCGTCATCGTT
Found at i:553945 original size:69 final size:69
Alignment explanation
Indices: 553777--553920 Score: 270
Period size: 69 Copynumber: 2.1 Consensus size: 69
553767 CTGAAGCTGA
553777 AAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTGCACTTTTTCCCTTAAGGAAAGCAG
1 AAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTGCACTTTTTCCCTTAAGGAAAGCAG
553842 CTTC
66 CTTC
* *
553846 AAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTTCTCTTTTTCCCTTAAGGAAAGCAG
1 AAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTGCACTTTTTCCCTTAAGGAAAGCAG
553911 CTTC
66 CTTC
553915 AAGAAA
1 AAGAAA
553921 TTCTTTTCTA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 73 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (69 bp):
AAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTGCACTTTTTCCCTTAAGGAAAGCAG
CTTC
Left flanking sequence: Indices 553277 -- 553776
TGGCTGGGAATCTGAGCTCTGTCTCTGTCTGATCTTTCTCCTTATGAATCAAGTGGTTGAAAGGA
AAGACTGACCTCAAGAATTAATGAGACTTAACTACTGACCCTGAACCTCTACAACTCGGTTTCAC
AATTTCATTTCCTGCCCCTCTGCCTTCTTTGACTCCCTTTCCTCTATTACAAGCCAAGACTCCTT
ATGCATTCTCCGATTCCTTCTTGATAGTAAAGGAAACTCCTGAACCTGTCGGTTTCACAGCTTCG
CTCCTTCACCTGTCGGTTTCACAGCTTCGCTCCTTCACCTATTCATTGTCGGTCTTACAATTCCA
TTGCTGATCCTCTCCTTTACAGTCGAGCCGCTGAAAGAAAATCTTTTGTATCCTATATAGGGGTA
AAAGTTCGTAAGAGGTTTTTCACTAATAGCTGGAGCAAAAAGCAAATAAATTCTATCCAGCATAG
GGGTCAAACCTTGTCATAGCTTTTTCCCTTAATAGCTGAAGCTGA
Right flanking sequence: Indices 553921 -- 554420
TTCTTTTCTATCTTTCCCCTATTTTTCGGGATAAAATCCCGGTATTTAGGGCAGAGGTAATGTTG
AAGTCAATCCTTCAGATTCATGAGAGTTAACTGTCAGTCAATCCTCAAGATTCATGAAACTGTAA
ACACGACTTATTCATTCGTCATCGTTCACTGGAAGGAAAGACTATCGATTCATGAGACAGTCAAT
CCTCTCTCTTCCTTCTTTCTCTTTCTCTGATCCTCAAGATTCCTTCTATCTTTACCCTATTTTTG
GGGATCAAATCTAGTCAAGGTAATTACGTATTAAGGAAAGACGAAACGAAACATTCGTTATCCTT
CACAGTCAGGAAAGAGGTAAACTCCGGAACTACTTCACGAACCGAACCTTCTTTCACTCAGTCTT
GAACAAGGTACGCTAATGAATTGACTCTCACTCTCCCTTGAACGAACAGTAAACAAAGACTCCTT
ATTAATTCGACAGATTGAACTGTACTTTCTCCTTCACCGATATTA
Found at i:561750 original size:33 final size:33
Alignment explanation
Indices: 561712--561808 Score: 109
Period size: 33 Copynumber: 3.2 Consensus size: 33
561702 ACCTTAAGAG
561712 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAA
1 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAA
** * *
561745 GAGGTG-A--AACCGCGAGA-CC-AAGGG-G-A
1 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAA
561771 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAA
1 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAA
561804 GAGGT
1 GAGGT
561809 TCAACCACGA
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
26 7 0.14
27 2 0.04
28 4 0.08
29 9 0.18
30 9 0.18
31 4 0.08
32 2 0.04
33 12 0.24
ACGTcount: A:0.31, C:0.13, G:0.43, T:0.12
Consensus pattern (33 bp):
GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAA
Left flanking sequence: Indices 561212 -- 561711
AGTAATAAGAGAAAGAAAGAAAGAGAATGCGGAAATCCCTCTCATCGCATCTAATCTTTTGGATT
CAGCGTCCATCTTCTTAAGCTTAAAACCTAGCATCCACTTGACTTTATCTGAAAGATCCTTGATC
TTGAAAATCTACTTTGTCAGATAGACGATCAAGTTTATCTTCTAACCTCTCAAAATGCTTCTCAA
GGAGGCTGAATCTATATTCCGTGAGGAAAGGAGAAGAAAGACGTTTTATGTGTTTTATCTTTTCT
TTTTCTACAGGAACAGCCATACGGTGAATATAACAAATTAGAAGGGGGAAGAGTCAAATCATACT
CTTTTTTTATCCTGGTGAACCGTTTACCACCGGAGCATAGCATTTGTCATAATTCCTCCTACAGC
TCTTTAGTATTAGTATATGCGTCTTTCCCACTTGATTTGCTGGACAGGGGTGAAACCGCGAGACC
AAAGAAAGGGAGAGGGGCAGGAGCGAAGCTGTGAAACCTTAAGAG
Right flanking sequence: Indices 561809 -- 562308
TCAACCACGAGACCAAAGGGAGAGGGGTGAGGTTTCCTTCTTTCCTGTATCAAAAAGTCTTCCTC
CATTGTGCGCTTACCGAGAAAGGTCAGCTCATATATATAATGCGTCCCTTTGCATCCCTTCAATA
AATGCCCCGTAAGAACAAGGTAATCAATCAATCACTGTCCGTGCGCTAAGAGGAGGGTTTCATTT
TCTTCCAATATCTTTTAGGCAATAACAAAGAGACATAATTATTCGGTTCAGGAATCTTCCTAAGG
ATCCTAGAAGACTCACACCTTTAAGAGTTCTTACAAATCTATTTGCGGAAAGGGGGTTTTGATTA
ATATCAAGCCCAAGATCACCCGCTATCTTCAATCCCATGTTTTAGGTATTTTTTTCTTTGTTAAA
TATACAACCAGTCTTTATGATGGATGGAAGAACCTTCTCTCCTGCAATCCATTTCGAAAACGGAA
GCGAGGCTTATCCGAACGAGCGAGGAAGAAATATAGCCCTTGCTC
Found at i:561778 original size:59 final size:59
Alignment explanation
Indices: 561712--561833 Score: 208
Period size: 59 Copynumber: 2.1 Consensus size: 59
561702 ACCTTAAGAG
* *
561712 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAAGAGGTGAAACCGCGAGACCAAGGGGA
1 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAAGAGGTGAAACCACGAGACCAAAGGGA
**
561771 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAAGAGGTTCAACCACGAGACCAAAGGGA
1 GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAAGAGGTGAAACCACGAGACCAAAGGGA
561830 GAGG
1 GAGG
561834 GGTGAGGTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.33, C:0.16, G:0.41, T:0.11
Consensus pattern (59 bp):
GAGGTGAAGGAATTGTGAGACCCGTAGGGCGAAGAGGTGAAACCACGAGACCAAAGGGA
Left flanking sequence: Indices 561212 -- 561711
AGTAATAAGAGAAAGAAAGAAAGAGAATGCGGAAATCCCTCTCATCGCATCTAATCTTTTGGATT
CAGCGTCCATCTTCTTAAGCTTAAAACCTAGCATCCACTTGACTTTATCTGAAAGATCCTTGATC
TTGAAAATCTACTTTGTCAGATAGACGATCAAGTTTATCTTCTAACCTCTCAAAATGCTTCTCAA
GGAGGCTGAATCTATATTCCGTGAGGAAAGGAGAAGAAAGACGTTTTATGTGTTTTATCTTTTCT
TTTTCTACAGGAACAGCCATACGGTGAATATAACAAATTAGAAGGGGGAAGAGTCAAATCATACT
CTTTTTTTATCCTGGTGAACCGTTTACCACCGGAGCATAGCATTTGTCATAATTCCTCCTACAGC
TCTTTAGTATTAGTATATGCGTCTTTCCCACTTGATTTGCTGGACAGGGGTGAAACCGCGAGACC
AAAGAAAGGGAGAGGGGCAGGAGCGAAGCTGTGAAACCTTAAGAG
Right flanking sequence: Indices 561834 -- 562333
GGTGAGGTTTCCTTCTTTCCTGTATCAAAAAGTCTTCCTCCATTGTGCGCTTACCGAGAAAGGTC
AGCTCATATATATAATGCGTCCCTTTGCATCCCTTCAATAAATGCCCCGTAAGAACAAGGTAATC
AATCAATCACTGTCCGTGCGCTAAGAGGAGGGTTTCATTTTCTTCCAATATCTTTTAGGCAATAA
CAAAGAGACATAATTATTCGGTTCAGGAATCTTCCTAAGGATCCTAGAAGACTCACACCTTTAAG
AGTTCTTACAAATCTATTTGCGGAAAGGGGGTTTTGATTAATATCAAGCCCAAGATCACCCGCTA
TCTTCAATCCCATGTTTTAGGTATTTTTTTCTTTGTTAAATATACAACCAGTCTTTATGATGGAT
GGAAGAACCTTCTCTCCTGCAATCCATTTCGAAAACGGAAGCGAGGCTTATCCGAACGAGCGAGG
AAGAAATATAGCCCTTGCTCTGATAGAACGTATACATTTGGATAC
Found at i:566112 original size:17 final size:17
Alignment explanation
Indices: 566090--566126 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
566080 CAAGAATGAG
*
566090 ACTGAACTCCGGAACCT
1 ACTGAACTACGGAACCT
*
566107 ACTGAACTACTGAACCT
1 ACTGAACTACGGAACCT
566124 ACT
1 ACT
566127 TATTAATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (17 bp):
ACTGAACTACGGAACCT
Left flanking sequence: Indices 565590 -- 566089
ATTAGTGTAGTTATAAGGCTTAGCCATTTATCTGAATGAGAGTTTTTCTTAGAGCGGGATTCCAC
CTTTCAGCTATTTCTTCCAAGGTCTTCATTCAATAGCTGCTCTCTTGTCGGATGCCCTAGAGAAT
AGACCATATTCTCCGTCAGGCTTTTCACGGTCAACGAAAACTGGGATATTTATTCATCTATGATA
TGGTTATGGTTTATATGGTATGGTTCCTACAGGGCTGAATCCAAACTTCCATAGGTCTCTTAACT
GCTTTTTCGGGAAAGAGATTGATAGAGGATCTCCGCTTTTGAAGAGGGCACCGGCAAGAGGCTAA
TCAAAGAATAGATTGATTGCATTCATACATATTCTTTCTGCTTAAAAAAGATGAATCTTCACTCA
TCGAACACGGTAGGGCTTGGCACGCTAACGCTACTACGACCGATACGAGACTGAACTCAAGATTA
ATTAGACTGGAACTGTAAGAAAAGAAGCAACGAAACAAGAATGAG
Right flanking sequence: Indices 566127 -- 566626
TATTAATGATCCGGAAGAGTAAGTCAAGAAAGAGAAGCTAGCTCATGAACCTGAACCGCTATTAC
CTGACCAGAACCTGAACAGAATGAAAGAATCAGATATTCCTTTCTTTACTGTCGAGTCAATGAAT
TAGTTGCTTTACAAGAGAATTGATTGAAGGGAGGGGAGAAATGAAAGATTAATTCGACTTGCCAG
GAGGGAGAGTACGGGAACGAACCTTAACCTTATAATGGATTAGCTACTGAAAGAGAATGAACAGG
GTAAACTGGACTATGTATTCTTCTTCACCTCTATTCCTTCCCTCACCTCAGAGAAGGAATTGATT
GAAGATTACAGTAGAGTCAATTCATGAAATCCAGTACCAGATTGAACTGAAAAAGAAAGATCAGC
TGCCAGCCCCTTCTATATTAGATTATTACTACCTTCGCTTCTGGAACAGTAAACTCATTAACCTC
TATTCCTTTCTGTGTGAGTTATTCGACTGAACTACCTAACCTCTC
Found at i:570382 original size:17 final size:17
Alignment explanation
Indices: 570360--570393 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
570350 TACTATACTA
*
570360 TAACCTTAATAAGCTCT
1 TAACCTTAATAACCTCT
570377 TAACCTTAATAACCTCT
1 TAACCTTAATAACCTCT
570394 ATAGAAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (17 bp):
TAACCTTAATAACCTCT
Left flanking sequence: Indices 569860 -- 570359
TTGCCCTATGTATGCTCTGCTTTCTTGACTTGACCTTTCCAGTCTTTGATTGAAGTGTTGAAAGG
AAAGCCTAAGGATGAATTCTACTGAACGAAATCACTCACTATACTTCTTTGATTTCCCTTAGCAA
GTCTTTCATCAAGTCTGAACTCAGCAGCAACTGAAAGAGCAAGATCAATTCAAGACTGAACCTCA
CTTAAGTTAGTTAGCTATACTGAACCGGAACCAGAAAGCATTCCCTACTCCATACTGACACTTAC
GACTGACTCTCTACTTTCACTTAGAACTCTAGACTTATTACACTTCCTACTCCCTACTCCATACT
GGAACTTAGAACTACTTACTCATTAAGCGATCCTACTCATTAAGCTCTACTGCCTGCCTACAAGC
GATATTCCTTGACGGACGAGGAGAACCTATTATGTTACACCTTCAATCCTCTAACTGAGGAGAAA
GCAAGACAAGAAGATTGATTACGGGAAGGTAATGCTACTATACTA
Right flanking sequence: Indices 570394 -- 570893
ATAGAAAGCAAGAGCGTAAGATCCCTTCCCTACCCATTACTACAATAAGGTCAGTCAAGCTCACT
CATTAACAGACAGCAAGAGAAGAAGATTTCTTAGATCCGGGAAGGTCATGCTACTAACTTTGACG
AGACAACTGGAACAAGAAGATTTATATATTACAGGAAGTAGGTTCAAGCAAATCTCTGGCCTAGA
ACAAGAGTATGAATTACGGAAAGGGGGAAGGGGTCAAGTTAACCTAACGTGACGAGCAAGACAAC
TACATTGACATTAAAAGGTAAAGCTTACCCCTAGTCTATCTAGAGAAAGACAAAGAACAAGAGAG
GATAGATATTCATTACATACAGAAAGAGAAGCTGCTCACTCACTCACCTATAGCTATAGAGCAAG
CAACCAACCAATACAGACAAGAAGATTCCTTACATACGGAAAGGGTAAAGCTAATCTGACGTCAA
GAAGAACTACATTGACATTGACATTACTACTGAAGGGTAAAGCTT
Found at i:571018 original size:47 final size:47
Alignment explanation
Indices: 570949--571041 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
570939 AAGGTCAAGT
*
570949 CAAGCTCCTGCTATTCTGGAAGAACTTAATTGACATTACGGAAAGGC
1 CAAGCTCCTGCTATTCTGGAAGAACTTAATTGACATTACAGAAAGGC
570996 CAAGCTCCTGCTATTCTGGAAGAACTTAATTGACATTACAGAAAGG
1 CAAGCTCCTGCTATTCTGGAAGAACTTAATTGACATTACAGAAAGG
571042 GGTCAAGCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (47 bp):
CAAGCTCCTGCTATTCTGGAAGAACTTAATTGACATTACAGAAAGGC
Left flanking sequence: Indices 570449 -- 570948
CAAGCTCACTCATTAACAGACAGCAAGAGAAGAAGATTTCTTAGATCCGGGAAGGTCATGCTACT
AACTTTGACGAGACAACTGGAACAAGAAGATTTATATATTACAGGAAGTAGGTTCAAGCAAATCT
CTGGCCTAGAACAAGAGTATGAATTACGGAAAGGGGGAAGGGGTCAAGTTAACCTAACGTGACGA
GCAAGACAACTACATTGACATTAAAAGGTAAAGCTTACCCCTAGTCTATCTAGAGAAAGACAAAG
AACAAGAGAGGATAGATATTCATTACATACAGAAAGAGAAGCTGCTCACTCACTCACCTATAGCT
ATAGAGCAAGCAACCAACCAATACAGACAAGAAGATTCCTTACATACGGAAAGGGTAAAGCTAAT
CTGACGTCAAGAAGAACTACATTGACATTGACATTACTACTGAAGGGTAAAGCTTACCTGACGTC
AAAGAAGAACTTAATTGACATTACGGGCAGGCAAGAAGGTCAAGT
Right flanking sequence: Indices 571042 -- 571541
GGTCAAGCTCAAGCTACTAACCTGACAATATAACAACATTTACAGGAAGGTGTTCTCAAGCTAAC
CTAAGGTGACGAACAACAACATGAATTACATACTCCTGAAAGGGCAAGGCTGGCTGGCTGGCTAA
TCTAATCTATAGAAAGAAAGAGAAAGAACAAGAGAAAACTAAGACTAACATGACAAACTAGGTAA
AGCTAAACCTTATTACAAATATAAATACAATAAAGTGATTTCTATCTCTCCCCCCTCCCTTGACC
ACTTACTCTATTTCTTGATATTTCTGTTTGATTGAAAAAAGACTAAATTGCTGAAGACGAGTTTT
CACTGTCAGACTAAAGCCAAAGAGTTTACGGTGAATAACTAGCTAGTCAAAGTAACTGCATAAGA
GTCACGAACCTATAGTGTTGAAAGACTCTTAAGAAAGGCTTAAGCCAAGATGCGTTCACTCTTTC
TTTCTTTCCCCTGTCCCGTAACCTGATTGACTTTGTATTCTTTCT
Found at i:577034 original size:20 final size:20
Alignment explanation
Indices: 577009--577051 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
576999 CTTATACTCT
577009 GATACGATATTCCCTTGCCG
1 GATACGATATTCCCTTGCCG
577029 GATACGATATTCCCTTGCCG
1 GATACGATATTCCCTTGCCG
577049 GAT
1 GAT
577052 GGAACTGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (20 bp):
GATACGATATTCCCTTGCCG
Left flanking sequence: Indices 576509 -- 577008
TGAACTACTGAACGAACCTTTGACTCTATTCCCGGACTATTCTTTCATTGCCCTCGGTAAAGCTG
CTTGCTTCTCCCCTCGTCTCGTGTGTGGCTTGGTTCTTTCTCCTGCCTTCACTCTTTCACCTATT
TCTTATTCTTTTTCACAGTCAAAACAAGGGAAACTGATGAACCTACCTTCTTTCCCCTATTCTTT
TTCTATTTCTTCTTTGTAAACTCATGAACTACTTCCTTTTCCTTCTTTCACGGATCTTTCTCCCT
TGAACTCGGGTGGAACTATTCTTGAACTTGGTAAAGCCTATTCTTTCTCTTTATGAATGAGACTG
ATTGAGACCTCGGTAAAGAAGTTGCTAATTCGGGGACTCTCCCTTGTCAAATACCCCTTCTTCCT
TCCCTTATGAATGAGAGAGAACTATTCTATTACTGATTAACCTGATTGAGCCTATTTCTTCTTGT
AACTGTAACCAGATTGTGTGTCTTCGCTTCTTCCCCTTATACTCT
Right flanking sequence: Indices 577052 -- 577551
GGAACTGTCAAAGAAGAGATGAATGAGCCAGAACAGTCAGTCAATCCTCAACTCAAGACTGAAGA
TGAATGAGACTTGACAGTGTTTGAAATCGGGTATAGGAAAGAAAAGAGATAGTTCAACCTGCCCC
TCTACTCTATCTATTCCCTATTGATTCTTGAACTCGTTATTCTTTGTTTCCGGTCTCGTTGCTGC
TGCTGCGCGCCTCTTTATTCACACTCTGCTGTAAACTCAATCACTACTGAACTACTTCACTCACC
TTCTTTCACTCTGTCTTTCCTTTCAGAAGGTAAAGCATATGGAATCCTTCTTTCACTCCGTCACC
TATTCTATTGGTCTCACGGCTGAGATTACCTTATTTGGTCTGAGAAGGACTAAGTCAGTTCTTTG
CCCAGATTAAGTTCCAGATAAAGAAAGTAACCCTGGGACTTCTATTACTTACTTACTCTCCTGTA
ATAAAAGAAGAAGAATCAACCTTTTCCTCGGCTTGGCTCCTTGCA
Found at i:581656 original size:26 final size:26
Alignment explanation
Indices: 581589--581660 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
581579 AGACTATCGA
**
581589 TTCCTTCTTGATCTTGATCTTCTCTC
1 TTCCTTCTTGATCTTTCTCTTCTCTC
581615 TTCCTTCTTGATCTTTCTCTTCTCTC
1 TTCCTTCTTGATCTTTCTCTTCTCTC
581641 TTCCTTCTTGATCTTTCTCT
1 TTCCTTCTTGATCTTTCTCT
581661 GATCCTCAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.06, C:0.32, G:0.06, T:0.57
Consensus pattern (26 bp):
TTCCTTCTTGATCTTTCTCTTCTCTC
Left flanking sequence: Indices 581089 -- 581588
TTCTCCTCGTTGCTTCGCTCATTCGTTGTGTGTTTCACATTGCTTGGTTGGTTCCTCTCTCTCCT
GTTGGAGTCTCATTGGTTTGCTCCTGTCCCTGCCTGATTCAGAATGATTTCTTCTTGTTTACGAA
GGTTGAACTCTGTAAGCTTTTCTTTCTTTCACTCCTTATATTCTATGTCTCACTGTTTAGCTCCT
TTCCCTTAAGGTAAAGCTGCAGCAGAGCTCAATCACCTGTCGGTTAAACAGCATCGCTCCTCTCC
CTTCTTTAACTGTAAAGGGGAATTGAAAATGAAAGAAAGATTTGCTCATTCTCCTGTAAACACGA
AAAAAACTAGAATGATCCGAAAGAAGAATCAATGAGAGTGAACTGTAAGTCAATCCTCATTCTTC
CTTCTATCTCCCCCTGATTTTGAGGGCTATTTAGGGCCGAGGTAATGTTGAAGTAGAAGGAAAGA
CTATCGAAGAATCAATGATCGTTAACTGTAAGGAAAGACTATCGA
Right flanking sequence: Indices 581661 -- 582160
GATCCTCAACTCTCTCGTCATTCTTTCTCTGATCTTTCTCCTCTCGCTATCGGTCTCGCTCGCTC
CTTTCAAAAAGCATTCTAACCTCCTCTCCTGAACTATGTTATTACTTCTGTCCCTGATTGAACTG
ATCTTGATCCTGTCCCTTCAGTAGTGTTTCAAGTAAAGCCGAAAGAAGAATGATCGTTCCCTCAA
TCACTTGTCCCTATGTATTCTTTAACTGTAAACTCCTCTCTTTTTCCTGGCAGCTTCAATTCTAT
TGCTTTAACCTCTCACTCGGTAAAGTTCGGCCCTTCCCCTATTCTATTACCTGACCTTGCTGCGC
TAGCTTTCTTTGTTTTATTCCCTTCTTTGTCTTCGTCTTCTGACTTTGCCTCCCCCTGTGAACCT
GTCCCTGATTTCATTGAAGAAGGTCAAGCTATTTTACGGTCTCTTCTCTATATCTGCTTAATTCC
ATTCTTGTTATGGTTCTTTCTTTATTCTCATTCAGTGATTGATTG
Found at i:582945 original size:70 final size:67
Alignment explanation
Indices: 582849--583054 Score: 189
Period size: 70 Copynumber: 2.9 Consensus size: 67
582839 TGTATCCTAT
* ** ** **
582849 ATAGGGGTAAAAGTTCGTAATCGGTTTTTCAC-TAATAGCTGGAGCAAAAAGTGAATTAATTCTA
1 ATAGGGGTCAAAGTTCGTAAGAGGTTTTTCACGTAA-AGCT--A-CAAAAAGAAAAAGAATTCTA
582913 TCCAGC
62 TCCAGC
* * **
582919 ATAGGGGTCAAAGTTCGTCAGAGGTTTTTCCCTCGGTAAAGCTACTGAAAGAAAAAGAATTCTAT
1 ATAGGGGTCAAAGTTCGTAAGAGGTTTTT--CAC-GTAAAGCTACAAAAAGAAAAAGAATTCTAT
582984 CCAGC
63 CCAGC
* **
582989 ATAGGGGTCAAAGTTCGTAAGAGGTTTTTCCCTCGGTAAAGCTACTGAAAGAAAAAGAATTCTAT
1 ATAGGGGTCAAAGTTCGTAAGAGGTTTTT--CAC-GTAAAGCTACAAAAAGAAAAAGAATTCTAT
583054 C
63 C
583055 TTTCCCGTAT
Statistics
Matches: 120, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
70 110 0.92
71 1 0.01
72 2 0.02
73 4 0.03
74 3 0.03
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (67 bp):
ATAGGGGTCAAAGTTCGTAAGAGGTTTTTCACGTAAAGCTACAAAAAGAAAAAGAATTCTATCCA
GC
Left flanking sequence: Indices 582349 -- 582848
CCTCTCCCGTAAGGTCTCGCTCTTTCACTCCTGACCCTGACGTTAGTCCTATTGATTCTTGAACT
GTAAACACTCAACTCCTTATTCATTCTTGATCTGATCCTTTCTTGAACTATAAACTAAGAAACCC
CCTGATCTTTCTTCCACAGCTGAGATTCCCTCATTCCCCTCGTACGTAAACTCTCTGTCTCGCAG
CTTCGCTCAATCACCTGTCCTTTACAGGAGAGAAAATGAATAGTGTTTGGAAGAGAACTTAACTG
CTCCTGAAAAAGAAAGTGTTGAAAGGAAAGACGAAAGATGAATGAGCCGGAACAAACGGGAAGTC
AAGACTAAAGATTCGTTAGAGTTTACAGTGAAAGAAGGGAGAGGAAAGAGACTGAACCTATCCTT
TCTTTACCTTAGCTGCTTCAATTCTGATTAATTCCGGAAACCCCGGTAAAATGGGCTATTTAGCT
TTTTCACTAACAAAAGCTACTGAAAGAAAATCTTTTGTATCCTAT
Right flanking sequence: Indices 583055 -- 583554
TTTCCCGTATTTTAGGGTATAAAATGGATGCTTTACCCTGATTTCCCTCGGTAACGAGACTGTAA
ACAGTCAAAAAACAAGAAATCATTCTATCTTTCCCGTGTTTTTGGGTATAAAAGTCTATCTTGAC
CCCTATTTCCCTCGGTAACTCGACTGTAAACACTCAAAAAACAAGAAATCATTCTATCTTTCCCG
TATTTTGAGGTATCAAAGTGTATCTTTCCCCTCTTTTTCGGGATCAAATACCGGTATTTAGGGCC
GAGGTAATTATGAAGTTTCAGTCAATCCTATCGAAGAATCAATTCGACTTAACTGTAAGGAAAGA
CGAAAGATTCCTTCTTGATCTTGATCTTCTCCTCAACTCTCGATTCATTCAACAGTAAACACTCC
TTATTCATGAGACTCAACCAACCTATCCTTATTCATTCTTGATCTTTCGATTCATGATCCTGTAA
ACACTCCTTATTCGTCATCGTTCACTGTAAGTCAATCCTCAAGAT
Found at i:583210 original size:94 final size:93
Alignment explanation
Indices: 583047--583275 Score: 318
Period size: 94 Copynumber: 2.4 Consensus size: 93
583037 AAGAAAAAGA
* * *
583047 ATTCTATCTTTCCCGTATTTTAGGGTATAAAA-TGGATGCTTTACCCTGATTTCCCTCGGTAACG
1 ATTCTATCTTTCCCGT-TTTTTGGGTATAAAAGTGTAT-CTTGACCCTGATTTCCCTCGGTAACG
*
583111 AGACTGTAAACAGTCAAAAAACAAGAAATC
64 AGACTGTAAACACTCAAAAAACAAGAAATC
* *
583141 ATTCTATCTTTCCCGTGTTTTTGGGTATAAAAGTCTATCTTGACCCCT-ATTTCCCTCGGTAACT
1 ATTCTATCTTTCCCGT-TTTTTGGGTATAAAAGTGTATCTTGA-CCCTGATTTCCCTCGGTAACG
*
583205 CGACTGTAAACACTCAAAAAACAAGAAATC
64 AGACTGTAAACACTCAAAAAACAAGAAATC
* *
583235 ATTCTATCTTTCCCGTATTTTGAGGTATCAAAGTGTATCTT
1 ATTCTATCTTTCCCGTTTTTTG-GGTATAAAAGTGTATCTT
583276 TCCCCTCTTT
Statistics
Matches: 121, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
93 5 0.04
94 109 0.90
95 7 0.06
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (93 bp):
ATTCTATCTTTCCCGTTTTTTGGGTATAAAAGTGTATCTTGACCCTGATTTCCCTCGGTAACGAG
ACTGTAAACACTCAAAAAACAAGAAATC
Left flanking sequence: Indices 582547 -- 583046
CGCTCAATCACCTGTCCTTTACAGGAGAGAAAATGAATAGTGTTTGGAAGAGAACTTAACTGCTC
CTGAAAAAGAAAGTGTTGAAAGGAAAGACGAAAGATGAATGAGCCGGAACAAACGGGAAGTCAAG
ACTAAAGATTCGTTAGAGTTTACAGTGAAAGAAGGGAGAGGAAAGAGACTGAACCTATCCTTTCT
TTACCTTAGCTGCTTCAATTCTGATTAATTCCGGAAACCCCGGTAAAATGGGCTATTTAGCTTTT
TCACTAACAAAAGCTACTGAAAGAAAATCTTTTGTATCCTATATAGGGGTAAAAGTTCGTAATCG
GTTTTTCACTAATAGCTGGAGCAAAAAGTGAATTAATTCTATCCAGCATAGGGGTCAAAGTTCGT
CAGAGGTTTTTCCCTCGGTAAAGCTACTGAAAGAAAAAGAATTCTATCCAGCATAGGGGTCAAAG
TTCGTAAGAGGTTTTTCCCTCGGTAAAGCTACTGAAAGAAAAAGA
Right flanking sequence: Indices 583276 -- 583775
TCCCCTCTTTTTCGGGATCAAATACCGGTATTTAGGGCCGAGGTAATTATGAAGTTTCAGTCAAT
CCTATCGAAGAATCAATTCGACTTAACTGTAAGGAAAGACGAAAGATTCCTTCTTGATCTTGATC
TTCTCCTCAACTCTCGATTCATTCAACAGTAAACACTCCTTATTCATGAGACTCAACCAACCTAT
CCTTATTCATTCTTGATCTTTCGATTCATGATCCTGTAAACACTCCTTATTCGTCATCGTTCACT
GTAAGTCAATCCTCAAGATTCTTTCTCTGATCTTTCTCCTCTCCCTTATAGTCTTTGCTGCTGAG
CTTATTCGCCCATTATATGTCTCACAATTGCATAGCCTGAACCGTAACCCTGATTTCACTCCTCT
CCCTTGCTTGAAGAACTGGTAACCAAAGACGAACCGAAAGATTAAATTAATGAGACTTGACAGTC
GTAAATTCATTAGCTACTGAACCTTTATTCTCCGATTCATGATCC
Found at i:587269 original size:3 final size:3
Alignment explanation
Indices: 587261--587286 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
587251 ACTGGAGGAA
587261 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
587287 AGCGACACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Left flanking sequence: Indices 586761 -- 587260
GATTCATCCAACTTACCTTCTCAATCACCTGGCGGTAAAGCAATTCTACTATATGCCTGAACCTG
AACAACCTTTACACGGTCTCTTTTCTTTCCTCTCGCTATAGGTAGGTTGTCTCGAATCTCTTTTC
TTTCTCTTGATTTTCTAGTGTGAGTTTTTCTTTCCTTGACCTTTGACAGTATTACCTTCCTCTTT
TGCTTTCATTTTCTTCTCTGACTGATTAAACTTCTATCTTCAATACCTTTTTCACCTGTAGAGAT
TGGGTTGGCGTGAAGTGAGCGACTTCCCCTGTATTCCCTTCCCTTAACCTATTTACTACCTTATT
CATTTGAACTACTGAACCTATTGCTATTTCTTCTTTCTACTATGGATTCTTGAACAGGAAACTCG
GGGTAAAGAGTAGTAGGCTGATTGAACTCACTCTTTTACTCGACTGTAAGAAGGATGAATGAGAC
TCAAGCTTAACCCTTTTGATTGAACGAGGTAAACAACTGGAGGAA
Right flanking sequence: Indices 587287 -- 587786
AGCGACACCCTGAACCTGCCTGATGTCCCCCTTCCCTATTTATTCCTTCCAAAGGCAAGGTAAGG
TCAAGCTGCTAACTCATTCATTTATTCAAAGACTTACAACTCTCTTTAATCGTTCATCTTCTTTC
TCTTTCTCTGATCCTGAACCTGTCCAACAAGGACTATTCTTTCTTCGTCTTCTCTCTTTCACGTT
TTCCTATTTCTTCTTTCAGAGTAAACAAGGGAACCAGATTGACCTCTTTTCTTTCCTCTCCGGCT
TGTAAGAAGGATGAATGAAGTAGCTCTTTTCTTTCTTTCACCTATGGATTGATTCTTGAACAGTA
AACTGATGAACCTGATTGAACTCCTTTCCTTTACAGTCTCAGGGTTTCGCTCATTCGACGGTCTC
AGAATTCCATTGCCTTAGCTGCTTTGAAAGACTGAAGCAAGAAAGAGTTGTAAGTGTGTGTTTGA
ATAAATTCAGGGAGAAGCAAATGAAGGAATAATTCTCCTGACCCT
Found at i:597277 original size:96 final size:96
Alignment explanation
Indices: 597113--597314 Score: 404
Period size: 96 Copynumber: 2.1 Consensus size: 96
597103 TCTCCTGCCT
597113 GCCCCTTCACCTCCTCCGTCGGTTTCACCATTTCATTTCCTTCACCGGGTACGGTTTCGTGTCTT
1 GCCCCTTCACCTCCTCCGTCGGTTTCACCATTTCATTTCCTTCACCGGGTACGGTTTCGTGTCTT
597178 CGCCTCTTCGCCCTACGGGTCTCAGGGCTTC
66 CGCCTCTTCGCCCTACGGGTCTCAGGGCTTC
597209 GCCCCTTCACCTCCTCCGTCGGTTTCACCATTTCATTTCCTTCACCGGGTACGGTTTCGTGTCTT
1 GCCCCTTCACCTCCTCCGTCGGTTTCACCATTTCATTTCCTTCACCGGGTACGGTTTCGTGTCTT
597274 CGCCTCTTCGCCCTACGGGTCTCAGGGCTTC
66 CGCCTCTTCGCCCTACGGGTCTCAGGGCTTC
597305 GCCCCTTCAC
1 GCCCCTTCAC
597315 TCAATCACTT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 106 1.00
ACGTcount: A:0.08, C:0.40, G:0.19, T:0.33
Consensus pattern (96 bp):
GCCCCTTCACCTCCTCCGTCGGTTTCACCATTTCATTTCCTTCACCGGGTACGGTTTCGTGTCTT
CGCCTCTTCGCCCTACGGGTCTCAGGGCTTC
Left flanking sequence: Indices 596613 -- 597112
TCAGAGGGTCAAGCGACTGAACCTATATGACCTGAGCAGCTACTTCACCTACTTATTAATGAGAA
AGAAGAGTCAGTCAATCCGAAAGAAGAAGAAATGAGAGTGAACTGTAAGGAAAGACTCAAGATTC
CTTCTATCTCTCCCTTATTTTTTTGATTCAAATCCCGGTATTTAGGGCCGGGGTAATTTCTCAAT
CCGAAACTCTCGATTCCTTCTCCTTCACCTTCTTTCACAAGGTCAAAAAGATCAAGGAAAGAAAG
ATCAGCTCAATCACCTCTCCCTATTTTGTTGGTCATTTAACTCTTGAACAAGGGAAAGCCGAAAG
ATGAATGAGACTGAACCTTGAAAGAAAGAAGGGAGAGCCCAGCAAGGCTCAACAAGAATTCTCCT
TCACCCTTTTACAGAATGAATTGATTGAAAAAGAAAAAGAAAGTCAAGACTGAAGCTCAAACCAG
GACGGACTATAAACACGGGGTAAAGCTATTTTCATTCTCCTGCCT
Right flanking sequence: Indices 597315 -- 597814
TCAATCACTTGAAGAACTGTAAACACCTGACCATTCACCTATCGGTCTCATTGCTGGCTTCGCTC
CTTCACCGTAGAGGAAATTCATGAAAGAAGGAAGGAACCTTCCCCGGAACCTATTTCCCATTTCT
TCTTTCACTCAGTCTTTCACAAGGGAAAGCCGCTAATTCATTGACTCACTCTCCCTTTTCCGTCA
TTGAACAAGGTAAATAAATAGGAACAGTAAGAAAAGAAGAAGAAAGATGAAGACGAGTTGTAGAA
CTGAACTCAATCACCTGAACCGATATGACCTTCTTTCACTCTTTCAAAAGCTGGTTGGTTACCTC
CTACAGTCTCGTCGCTTTGCTCCTCTCTCTCTTAGCCTTTCTTTCACCGTACGTAAAGTGGCTTG
GCTTCGCTCCTTAGCTGCTTTTCAAGCCAAAACAAGAAGGGGGAGACTCAACTCCTTCTCCTCTG
GATCCTATTTATGAAGGAACTGTAAACACTCAATCAACTCCTTAT
Found at i:609621 original size:31 final size:31
Alignment explanation
Indices: 609585--609646 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
609575 ATCGATTCAT
** **
609585 TCTATCTTCTGTCTATTTTTTTGGATAAAAG
1 TCTATCTTCTCCCTATTTTTGGGGATAAAAG
609616 TCTATCTTCTCCCTATTTTTGGGGATAAAAG
1 TCTATCTTCTCCCTATTTTTGGGGATAAAAG
609647 AGAGTCAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.47
Consensus pattern (31 bp):
TCTATCTTCTCCCTATTTTTGGGGATAAAAG
Left flanking sequence: Indices 609085 -- 609584
CACTCTTTTACTCGACTGTAAACAAATGAAAGGATGGAAGAGAGTGCGGCTTCTTCTCCTCTTTC
TTCTTTGCACTCGGTAATAAATAAATAGGTTAAAGCATCTTCTGTTACTTTATGGTCGAGCAGCT
TGGCTCCTTTTCTTTTCCTGAAGAAGAAAGATGAATCAGACAGATTGAACTCGGTAAACAGGACG
ATTCTCCTTTCTTTCACTGTCTGTAAACTAAGACTCAACCTTAACTAACCCTGAACCTGCCCCGA
TATTATTCCCTCACCTTCTTTCTGGAGGTAAAGCGTCAAGAAGAACCTGAACCGGAAGGAAAGAG
TAAATTCATGAAGACGCTGCTTTGAAAGACTCAAGCAAGAAAGACTCCTTATTCATGATCGTTCA
CTACTGAACCTGAGAGTGAACTGTCAGGAAAGACTCAAGATTCCTTCTTTCTCTTTCTCTGATCC
TCAAGATTCATTCTCGTTCACTGTCAGTCAAGACTATCGATTCAT
Right flanking sequence: Indices 609647 -- 610146
AGAGTCAAGGTAATTCCGTATTAAGGAAAGACTCCTTATTCATGAGAGTTCACTGTCAGTAAATC
CTCAAGAGAAAACCGTCACCTTTATTCCCTTCCCTTATTTCTGGAGGTAAACTCGGCGAGCAGCT
TCGCACCTTTCCGATTCATTCTCCTGAACTACTTCACGAACCAGATGGAACTCTGTCTTCTCCTT
TCGTTCTTTTCTTTCTTTTTCTATTTCTTCTTTTATTCCATTCTAATCTTTTACAGAAACTCTTA
GTTGTCCTTACGATCCCCCTTTCAACAACATACCGGCCAAAACTCGTGCTCCGAAAGACTAGTAT
GAGATAATTTGTATAAATGTATCGCCATGCTATTAATTTGATTTCAGTTCTTTTCTTTCTAAGAG
GTGGAATAGAATAGAATAACCCGGTTGAAGCGTAATGATCATACGTCTGTAATGCATTGTATGTC
CCATAATAGGTCCCATTCATTCTTCCTTCTAGCCTTTCTTTCCCG
Found at i:615528 original size:18 final size:18
Alignment explanation
Indices: 615505--615543 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
615495 AGGGTTTGAT
*
615505 TATTGATGATAGTGGCGA
1 TATTGATGATAGTGACGA
615523 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
615541 TAT
1 TAT
615544 CGACCGTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Left flanking sequence: Indices 615005 -- 615504
GATATTATTCATTGATAAGAAGAAATGTGAACGGTTATTGGATTGATGAGAAAGAAAGAGAATTC
TTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGATTCTGACTCA
TAGTGAGAATTTCTCAAAGAATGACTCTGGTTATCAAATGATTGAACAACCGGGAGTAATTGACT
TACGAGACTTAGTGGACATTCATCTTTAGCAGAAAGACGGACATTCCTTGCTCATTATCAGACAA
TCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGTTTGAATTTCCCATCTCATGGAA
AACCCTTTTCCCTCCGCTTAGCCCTATCCCCGGGGGTATTTTAGTGATAGGTTCTATAGGAACTG
GACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGGTAT
TTCTGAACAAGTTCCTGGATAACAAGCCTAGCCTAAGGGTTTGAT
Right flanking sequence: Indices 615544 -- 616043
CGACCGTGACCTTGAGGCTGGAGCTTCTAAGATGAATGCGCTATGGATATGATGCCGGAAATAGA
CCGATTTGATATCACCCTGAAATTAGAATTAGCAAAAGCAATGTCTCCTTGCCTAATATGGATTC
CAAAGATGAATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGTCTATTAGTGAACTAT
CTCTCCAGGGATTGTGAAAGATGTTCCACCCACTAGAATCTTTCGACTGGAACGAGAATCTCGAT
AACCTAAACAAAAATGCAGAAGTGAGCCTACTCCTCTCTCCCCCTTTTTTAGCCAACACCATCAA
CCCCATTCATTTTGAACCTTGAATGAGTCAAAGCAAAAAATAGAAGATAAATAGAAGGAAAGGAG
ATCAGAAAGATACGTGGACGACTTGACTCTCGTATAGGTCGGATGTTTCCGTGAACAGTAAGCAG
TGGATCTCCCCTGATTTTGGGAAAGCTGGTGTGGTGGCCGCGTGT
Found at i:622513 original size:29 final size:30
Alignment explanation
Indices: 622481--622539 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
622471 TATCTGATTG
622481 AACTGT-AAACAAAGACTATCGAAGAATGA
1 AACTGTCAAACAAAGACTATCGAAGAATGA
** *
622510 AACTGTCAAGTAAAGACTATCGATGAATGA
1 AACTGTCAAACAAAGACTATCGAAGAATGA
622540 GACGGAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (30 bp):
AACTGTCAAACAAAGACTATCGAAGAATGA
Left flanking sequence: Indices 621981 -- 622480
ATTCTATAACTGGCACATCTGTCTTTTGCTCCTCTCTATATGTATGTGCTTTAGCCCTGCCTACC
TAATTTGTGAATACTGAAAGAGAAAGAGATTCGTCTTGCTTATGTGCTTGCTTATTGGATGGAGT
GCGGGGTAGATGCTTCTGACCGAACGGCTCTTTGCTTGCTTCACCCAAGATGCTGTTTTATTCTA
TGGATTATAGAAGTTAACATTCTGAAGGAAACCCCGATTTCGTTAGTGTTTCGGGAAAAGGGAAA
TGAGGCGTTAAGAAAAGGAAAACAAAGCGCCCCTCTCCTTTACAGTCGAGCTTCTTCGCCCCTCT
CCTTTCCAGTCTTCGCCGCTTCGCGCGTTCGCCCATTGGGTCTCACCGCTTCGCGCCTCTTCTCG
TGGAGCTTCTTCTCCCCTCCCCTCTTCTCGTCGAGCTCCTTACTCCTTCCCCGATATGACCTGAA
CTTTACAGGAGAGTCAATGTGTGACTCTACTCTATTATCTGATTG
Right flanking sequence: Indices 622540 -- 623039
GACGGAACTAGAAGGAAAGAAGAAACTATCGAAGAATGAAACTGACGAGTGATAGAATAAATTCA
GGGAGAAGAAAGATGAATGAGACAGAACCAGAACCGAGAGCTACTGAACCAGAACCGAAACCCAA
AGACTATCCGACTTTACAGTGATAGAATAAATAGGGAGCCGAAAGAAAGATGAATGAGACTGTAA
ACACTATCGATGAATGAGAGTGAACTGTCAGACTCCCCTCAAGATTAATGAGACAGAACTCAATC
ACTTGTCCCTGATTTCACTCAAACACAAGGTAAAGCGCTATTTGAAGAACCTGCCCCTGAACCGG
GTACGGTAAAGTGTCTTCGCCCCTGAACCGGGTACGGTTTCATGTCTTCGCCCCTGAACCGGGTA
CGGTAAAGTGTCTTCGCCTCTTCGCCCTACGGGTCTCAGGGCTTCGCCCCTGAACCGGGTACGGT
TTCATGTCTTCGCCCCTGAACTCAATCACTTTCATAACAGTAAAT
Found at i:623007 original size:31 final size:31
Alignment explanation
Indices: 622852--623015 Score: 165
Period size: 31 Copynumber: 5.3 Consensus size: 31
622842 TGAAGAACCT
**
622852 GCCCCTGAACCGGGTACGG-TAAAGTGTCTTC
1 GCCCCTGAACCGGGTACGGTTTCA-TGTCTTC
622883 GCCCCTGAACCGGGTACGGTTTCATGTCTTC
1 GCCCCTGAACCGGGTACGGTTTCATGTCTTC
**
622914 GCCCCTGAACCGGGTACGG-TAAAGTGTCTTC
1 GCCCCTGAACCGGGTACGGTTTCA-TGTCTTC
* *** * * * *
622945 GCCTCTTCGCC--CTACGGGTCTCAGGGCTTC
1 GCCCCTGAACCGGGTAC-GGTTTCATGTCTTC
622975 GCCCCTGAACCGGGTACGGTTTCATGTCTTC
1 GCCCCTGAACCGGGTACGGTTTCATGTCTTC
623006 GCCCCTGAAC
1 GCCCCTGAAC
623016 TCAATCACTT
Statistics
Matches: 105, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
29 3 0.03
30 16 0.15
31 81 0.77
32 5 0.05
ACGTcount: A:0.15, C:0.34, G:0.27, T:0.25
Consensus pattern (31 bp):
GCCCCTGAACCGGGTACGGTTTCATGTCTTC
Left flanking sequence: Indices 622352 -- 622851
CGCTTCGCGCCTCTTCTCGTGGAGCTTCTTCTCCCCTCCCCTCTTCTCGTCGAGCTCCTTACTCC
TTCCCCGATATGACCTGAACTTTACAGGAGAGTCAATGTGTGACTCTACTCTATTATCTGATTGA
ACTGTAAACAAAGACTATCGAAGAATGAAACTGTCAAGTAAAGACTATCGATGAATGAGACGGAA
CTAGAAGGAAAGAAGAAACTATCGAAGAATGAAACTGACGAGTGATAGAATAAATTCAGGGAGAA
GAAAGATGAATGAGACAGAACCAGAACCGAGAGCTACTGAACCAGAACCGAAACCCAAAGACTAT
CCGACTTTACAGTGATAGAATAAATAGGGAGCCGAAAGAAAGATGAATGAGACTGTAAACACTAT
CGATGAATGAGAGTGAACTGTCAGACTCCCCTCAAGATTAATGAGACAGAACTCAATCACTTGTC
CCTGATTTCACTCAAACACAAGGTAAAGCGCTATTTGAAGAACCT
Right flanking sequence: Indices 623016 -- 623515
TCAATCACTTTCATAACAGTAAATAAAGACGAAAGGAAAGAGTAAATCAAAGAATCAGACTCCTG
ATCCTGTAAAGACCCTTGATTATTTTGTTGATGCTAGACGACTGTAAAGTGTCGTAAGAGCTTTT
TCACTAACAGCAGCGGGTTCAATTAATTCAAGTTTATCTAGATGACTGTAAAAGATCATTTTTTA
GTTAAAGAAGAAGGAACTGGCAGGCAGGATGAGAATCAGGTCAAGCTCCGGAACCGGAACCCATT
TCTTCTTGAACCTACTTATTAATGAGAAAGAACAGTAAGGAAAGACTAAACTCTCGATTCAACCT
CAAACCGTCACCTCTCCCTATTTTTGAGGTCATTTAACTCTTTTACTCGACTGTAAAGCTGCTTC
GCTCCTCTCCCTATCGGTCTCGTAGCTTCGCTCCTCTCCCTACTTACTCCCTCTTCTCTACACCC
TGCCTGCATTGGACTTCAAACACTCTTTTTCCAGTAAAGACCAAT
Found at i:627923 original size:14 final size:15
Alignment explanation
Indices: 627906--627934 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
627896 AAGCCAGCCC
627906 CAGT-GATCCATACA
1 CAGTCGATCCATACA
627920 CAGTCGATCCATACA
1 CAGTCGATCCATACA
627935 TAGCGTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.34, C:0.31, G:0.14, T:0.21
Consensus pattern (15 bp):
CAGTCGATCCATACA
Left flanking sequence: Indices 627406 -- 627905
ATGAAAATAAACGCAGAATTGAGAACAAGATTGTTTATACTTGCAACATGGTATCAATCAGAGCC
TAAAACCAAACCCTAACTCAATCGGTGAAGTCTGAATAGCTGCCGACCTCTCTGTGCATTACCGT
AAGTCCAATCGAGTCTCACAGCAACCACCACTTCCAAACCACTGTTTTTTTCCCCCGCTTACCAC
AATTTTGATAAAGTTTCTCGCAAGTCCCAGGAATAAAGCCGCAAGTTGCAAGTCCGCGAACCCAC
CAATACTAGTCCATACACATCACTGTAACAAGCCCATCCATCCTTACCACTAGCGTATTACGGCA
GCAAGCCCAACAAGCCAGCCCATCACCGTATAACTTTATCCATCCATTCCCACTACTGCCATAGT
CCATCTCTTTCTTAGATTCTTAGTCCCACTACCGCCAATAATTCTATCCATCACAGATTCATAGT
CCTCCCCAATTGCCAAAAGTCCATCAAGCCCATCTAAGCCAGCCC
Right flanking sequence: Indices 627935 -- 628434
TAGCGTATATACCTGGGTGACCCAGTCGCATATGCAGTAGCTCCAGATCGATACCCCAACCACGT
GATCGAGACCTATACACCCCACCCCTTCGTATGGTTACAGGTCCTCCAGTCCTTGTTTGTTGCAG
CGCATTAGTAGGTGATCCAAGACCAGAGATAAAAGAGGCAGCGGATTCATATACTGACCTTAGTG
ATATAGATCGAGACCTAGATAGAGAACGAGACCTGTTAGTGAGGTCCATATCGGTAATAGAAAGA
CCTGCCACAAAAAGCATTCGGAGCGGAAGTCGACCCTTCCCCCGCCATAATAGGACCACCTAGCT
TCGCAGCATCGGTCTCGTAGTAGCACATATCTTTATTTAGTGATCGTTATAGGGATAATGAAACC
AATGATAGAGTTGACCTAGCCTAGCGACATCCATCCCTTGTCTCCGACCGTAAGATAGAGACTAC
TGAATGCGCAACTTCAACATTTCCTGGGGTAGGCCTTTTTTTCAA
Found at i:633553 original size:12 final size:12
Alignment explanation
Indices: 633536--633560 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
633526 CCGACAATGA
633536 ATAGGTTCAGGC
1 ATAGGTTCAGGC
633548 ATAGGTTCAGGC
1 ATAGGTTCAGGC
633560 A
1 A
633561 ATGGAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (12 bp):
ATAGGTTCAGGC
Left flanking sequence: Indices 633036 -- 633535
TGAGGTACAACAAGGCCATTTCTGTCCACCGCCCTTCTCACAGAGCCGTACGTGGACGTTACCGC
TCATACAGCTCCCAGCCAGCAAGCAGTTAGCCTTCCTCTACAAAGAATGGAAGTGTAAATGAATC
GACATCAAATAGAGGAATTCGCTTTTTCTTTTCAGCAAGCCACATCTCAGATACGGGGCATCCCT
TTCACAAAAACCTATGGATCCACCCCAGCACCTTGTGATCTTTGAGAAAGAAGATCATTACGAGC
CCTCTCCCTATCGGTAAAGCAGCTTCGTTCCTCTCCGGTCCATAATCTTTTATCTTTTCTTTCCT
CTCCATCAATGTTTTTGTAGATTGAGAAAATTCCATGGTGGATCAGGACGAGAATGAATTCGGGA
ATCCAGGCAGGACATACTCATCCTGGAGCTTCCGCTCTCCTCTGGGGAAGAGTTTATATATATAT
CTCGAGAGGTGAGGAGAGGCAATGGAATTCTGAGACCGACAATGA
Right flanking sequence: Indices 633561 -- 634060
ATGGAATTGTGAGACGAGAAGAGGGTAGCCCCCTGACCGATTTCTCGGAATCTGAGGAAGACCCT
GAACAAGAAGAAGCAGCTCTCGATGTGAGATCCTCAGGAAAAGAAAGAAGAGGAATTGGATGCCC
CAGAGCAGCAGCCCACGGATAAGCCTTAAAAAACACACACACCACACCTCTTTTTCACTAATAAA
GCCGGACACAAACAAAAGAAAGAAGAAAAGGGCCATGATGATGATCCTATCTGAGTTTTCGACCC
GATTGATGCGCTCCTAGCTCGCCTACATACCAGAACAAAGAAAAAGAATCTCTAGATTACTTTGA
TCAGAGAATCCTTGGTTTGACCGACGGACTACGTGGGAAATACGAGATCTAGGCAAGCCGCTACT
TTCCCCTTGCCCTTGAACGATAGAAGAACTACTGAGATTCTCTTAGATAGCGGTCGCATCTATGG
TCAATCAATACAATAGGTCTGCGGATCTATTCTTCTATACTACAA
Found at i:638409 original size:28 final size:29
Alignment explanation
Indices: 638355--638416 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 29
638345 AGCTGCATCG
638355 CTCCTCTCCCTTCCGGTCTCACAGTTGAA
1 CTCCTCTCCCTTCCGGTCTCACAGTTGAA
* *
638384 CTCCTCTCCCTT-TGGTCTCACTGTTGAA
1 CTCCTCTCCCTTCCGGTCTCACAGTTGAA
638412 CTCCT
1 CTCCT
638417 ACTGTGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 19 0.61
29 12 0.39
ACGTcount: A:0.11, C:0.40, G:0.13, T:0.35
Consensus pattern (29 bp):
CTCCTCTCCCTTCCGGTCTCACAGTTGAA
Left flanking sequence: Indices 637855 -- 638354
CAGACCCCAATCCCCAAGCTTAGCATTGAACTCTGCATCAAGCAATATATTGCAAGTCTGAACAT
TTCTTTGAATGATTTGCCTCTCACATTCTTCATTCAGATAAGTCAGAGCGGAAGCAACCCCCCAA
ACGATATTCAATCTTTGCTTCCATGACAGGACTCTCGTCGAATTGGAGTTTCTGTGGAGAATATT
GCTGAGGCTTCCATTGGGTAAGTAATAAGAAACCAGGACTCACTCAGTATCTGAACAGCACCATC
CTTGAAGCTGAACCAAGTTAAGTTCTTGTGCCGTAAACAACCCAGCATTGTTTCAAACGAAAGGA
TTGCGCACGCATTCCATTGGCCCTCTCAACCCTTTTAATAGGTACTTCTCCACTTAATAGCCACA
CTTCTCCACCAGATGGAAGAAACAAACCCCTTCTGGTCGCTGATGCCCCTTCACCGGGTACGGTA
AAGTGTCTTCGACCCTGAACCTCCCCTTAAGGTAAAGCTGCATCG
Right flanking sequence: Indices 638417 -- 638916
ACTGTGTTATGCTCCTGACCTAGTACTGTTTCTGATCCTAACCTACTCCTGTTTCTGATCCTGAA
CTACTGAAGGCACTTCTCCTCTCTTTCTTTTGCTTACTTGGTTGGAAGGAACAAGTCAAGCCATA
AAGCTAGCTACTGAACTTCACTTCCAACTCTTAGACTTACTACTGCCCTGTAAGAACTGACTACT
GGCTCTACTGTAAGAACTGACTACTGCCTATACTTTCACTTCCTACTTGGCTCTACTGGAAGACC
TTACTACTGCTCTACTGGAAGAACTTACTACTGCTCTCTCTCTCTACTGGAAGAACTTACTACTG
CACTACTTCGACTTCTTCCCTTTCCCTACTGCCCTTTCTGTGTACTGATTAAACTCTATTGATTC
ATTCCCTGACGTGAACCTCTGTATGTATGTTACTACTGTACTTCCAACTCTCTACTGCTTTCACT
CTGTATGTATGTATGTTACTACTGTACTTCCTCTCTGTATGTTAC
Found at i:638460 original size:23 final size:23
Alignment explanation
Indices: 638415--638486 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
638405 TGTTGAACTC
* * *
638415 CTACTGTGTTATGCTCCTGACCTA
1 CTACTGT-TTCTGATCCTAACCTA
*
638439 GTACTGTTTCTGATCCTAACCTA
1 CTACTGTTTCTGATCCTAACCTA
*
638462 CTCCTGTTTCTGATCCTGAA-CTA
1 CTACTGTTTCTGATCCT-AACCTA
638485 CT
1 CT
638487 GAAGGCACTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
23 33 0.80
24 8 0.20
ACGTcount: A:0.18, C:0.29, G:0.14, T:0.39
Consensus pattern (23 bp):
CTACTGTTTCTGATCCTAACCTA
Left flanking sequence: Indices 637915 -- 638414
AACATTTCTTTGAATGATTTGCCTCTCACATTCTTCATTCAGATAAGTCAGAGCGGAAGCAACCC
CCCAAACGATATTCAATCTTTGCTTCCATGACAGGACTCTCGTCGAATTGGAGTTTCTGTGGAGA
ATATTGCTGAGGCTTCCATTGGGTAAGTAATAAGAAACCAGGACTCACTCAGTATCTGAACAGCA
CCATCCTTGAAGCTGAACCAAGTTAAGTTCTTGTGCCGTAAACAACCCAGCATTGTTTCAAACGA
AAGGATTGCGCACGCATTCCATTGGCCCTCTCAACCCTTTTAATAGGTACTTCTCCACTTAATAG
CCACACTTCTCCACCAGATGGAAGAAACAAACCCCTTCTGGTCGCTGATGCCCCTTCACCGGGTA
CGGTAAAGTGTCTTCGACCCTGAACCTCCCCTTAAGGTAAAGCTGCATCGCTCCTCTCCCTTCCG
GTCTCACAGTTGAACTCCTCTCCCTTTGGTCTCACTGTTGAACTC
Right flanking sequence: Indices 638487 -- 638986
GAAGGCACTTCTCCTCTCTTTCTTTTGCTTACTTGGTTGGAAGGAACAAGTCAAGCCATAAAGCT
AGCTACTGAACTTCACTTCCAACTCTTAGACTTACTACTGCCCTGTAAGAACTGACTACTGGCTC
TACTGTAAGAACTGACTACTGCCTATACTTTCACTTCCTACTTGGCTCTACTGGAAGACCTTACT
ACTGCTCTACTGGAAGAACTTACTACTGCTCTCTCTCTCTACTGGAAGAACTTACTACTGCACTA
CTTCGACTTCTTCCCTTTCCCTACTGCCCTTTCTGTGTACTGATTAAACTCTATTGATTCATTCC
CTGACGTGAACCTCTGTATGTATGTTACTACTGTACTTCCAACTCTCTACTGCTTTCACTCTGTA
TGTATGTATGTTACTACTGTACTTCCTCTCTGTATGTTACTACTGTACTTCTTCTCTGTATGTTA
GTTCCTACTGGATTTCCTTCCTTGCAATCCTCTAAGTAACCTGAC
Found at i:638622 original size:25 final size:25
Alignment explanation
Indices: 638594--638713 Score: 106
Period size: 24 Copynumber: 5.0 Consensus size: 25
638584 TACTACTGCC
*
638594 CTGTAAGAACTGACTACTGGCTCTA
1 CTGTAAGAACTTACTACTGGCTCTA
* * *
638619 CTGTAAGAACTGACTACTGCCTATA
1 CTGTAAGAACTTACTACTGGCTCTA
** *
638644 CT-T--TCACTTCCTACTTGGCTCTA
1 CTGTAAGAACTTACTAC-TGGCTCTA
* *
638667 CTGGAAGACCTTACTACT-GCTCTA
1 CTGTAAGAACTTACTACTGGCTCTA
*
638691 CTGGAAGAACTTACTACT-GCTCT
1 CTGTAAGAACTTACTACTGGCTCT
638714 CTCTCTCTAC
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
22 7 0.09
23 8 0.10
24 29 0.38
25 26 0.34
26 7 0.09
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (25 bp):
CTGTAAGAACTTACTACTGGCTCTA
Left flanking sequence: Indices 638094 -- 638593
CAGTATCTGAACAGCACCATCCTTGAAGCTGAACCAAGTTAAGTTCTTGTGCCGTAAACAACCCA
GCATTGTTTCAAACGAAAGGATTGCGCACGCATTCCATTGGCCCTCTCAACCCTTTTAATAGGTA
CTTCTCCACTTAATAGCCACACTTCTCCACCAGATGGAAGAAACAAACCCCTTCTGGTCGCTGAT
GCCCCTTCACCGGGTACGGTAAAGTGTCTTCGACCCTGAACCTCCCCTTAAGGTAAAGCTGCATC
GCTCCTCTCCCTTCCGGTCTCACAGTTGAACTCCTCTCCCTTTGGTCTCACTGTTGAACTCCTAC
TGTGTTATGCTCCTGACCTAGTACTGTTTCTGATCCTAACCTACTCCTGTTTCTGATCCTGAACT
ACTGAAGGCACTTCTCCTCTCTTTCTTTTGCTTACTTGGTTGGAAGGAACAAGTCAAGCCATAAA
GCTAGCTACTGAACTTCACTTCCAACTCTTAGACTTACTACTGCC
Right flanking sequence: Indices 638714 -- 639213
CTCTCTCTACTGGAAGAACTTACTACTGCACTACTTCGACTTCTTCCCTTTCCCTACTGCCCTTT
CTGTGTACTGATTAAACTCTATTGATTCATTCCCTGACGTGAACCTCTGTATGTATGTTACTACT
GTACTTCCAACTCTCTACTGCTTTCACTCTGTATGTATGTATGTTACTACTGTACTTCCTCTCTG
TATGTTACTACTGTACTTCTTCTCTGTATGTTAGTTCCTACTGGATTTCCTTCCTTGCAATCCTC
TAAGTAACCTGACTTAACCTGAGGAAGACGAGAACAACAGTTACATTACAGAAAGGTCAAGTCCT
CTCCTCTAAAGAGAACAACACAGTTACATTACGGAAAGGTCAAGTCCTCTCCTCTAAGGAACGGA
AGAGCAAGCAAGACAAGAACAACCAGATAAGATTATTACATTCCAGGAAAGAAAGAAGGTCAAGA
TCAAGCTCATTCACTTCTAGAGCACACACAACAGCAGGAACAACA
Found at i:638910 original size:26 final size:26
Alignment explanation
Indices: 638881--638941 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
638871 TCTGTATGTA
638881 TGTATGTTACTACTGTACTTCCTCTC
1 TGTATGTTACTACTGTACTTCCTCTC
*
638907 TGTATGTTACTACTGTACTTCTTCTC
1 TGTATGTTACTACTGTACTTCCTCTC
638933 TGTATGTTA
1 TGTATGTTA
638942 GTTCCTACTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.16, C:0.21, G:0.13, T:0.49
Consensus pattern (26 bp):
TGTATGTTACTACTGTACTTCCTCTC
Left flanking sequence: Indices 638381 -- 638880
GAACTCCTCTCCCTTTGGTCTCACTGTTGAACTCCTACTGTGTTATGCTCCTGACCTAGTACTGT
TTCTGATCCTAACCTACTCCTGTTTCTGATCCTGAACTACTGAAGGCACTTCTCCTCTCTTTCTT
TTGCTTACTTGGTTGGAAGGAACAAGTCAAGCCATAAAGCTAGCTACTGAACTTCACTTCCAACT
CTTAGACTTACTACTGCCCTGTAAGAACTGACTACTGGCTCTACTGTAAGAACTGACTACTGCCT
ATACTTTCACTTCCTACTTGGCTCTACTGGAAGACCTTACTACTGCTCTACTGGAAGAACTTACT
ACTGCTCTCTCTCTCTACTGGAAGAACTTACTACTGCACTACTTCGACTTCTTCCCTTTCCCTAC
TGCCCTTTCTGTGTACTGATTAAACTCTATTGATTCATTCCCTGACGTGAACCTCTGTATGTATG
TTACTACTGTACTTCCAACTCTCTACTGCTTTCACTCTGTATGTA
Right flanking sequence: Indices 638942 -- 639441
GTTCCTACTGGATTTCCTTCCTTGCAATCCTCTAAGTAACCTGACTTAACCTGAGGAAGACGAGA
ACAACAGTTACATTACAGAAAGGTCAAGTCCTCTCCTCTAAAGAGAACAACACAGTTACATTACG
GAAAGGTCAAGTCCTCTCCTCTAAGGAACGGAAGAGCAAGCAAGACAAGAACAACCAGATAAGAT
TATTACATTCCAGGAAAGAAAGAAGGTCAAGATCAAGCTCATTCACTTCTAGAGCACACACAACA
GCAGGAACAACAGGAACAACAGGAACAACAAGATATTATTACATTCTAGGAGAAAGAGGGAAGTG
AAAGTCTTCTCTTCTAAGTCACTTCTGTAGGAAGCAAGCTAACAGCATTCATTACATACGGGAAG
AAGGGGGTAAAGCTTACCTGACGTCTTAAGAAAGCAAGCATCAGGCAAGCAACACCAACACAATA
TGAATTACAGGCAGGAAGCGGTAAAGCTTACCCCTAGTCATGAGC
Found at i:638950 original size:30 final size:29
Alignment explanation
Indices: 638877--638951 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 29
638867 TCACTCTGTA
638877 TGTATG-TATGTTACTACTGTACTTCCTCTC
1 TGTATGTTA-GTT-CTACTGTACTTCCTCTC
*
638907 TGTATGTTA---CTACTGTACTTCTTCTC
1 TGTATGTTAGTTCTACTGTACTTCCTCTC
638933 TGTATGTTAGTTCCTACTG
1 TGTATGTTAGTT-CTACTG
638952 GATTTCCTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
26 25 0.64
30 12 0.31
31 2 0.05
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.48
Consensus pattern (29 bp):
TGTATGTTAGTTCTACTGTACTTCCTCTC
Left flanking sequence: Indices 638377 -- 638876
AGTTGAACTCCTCTCCCTTTGGTCTCACTGTTGAACTCCTACTGTGTTATGCTCCTGACCTAGTA
CTGTTTCTGATCCTAACCTACTCCTGTTTCTGATCCTGAACTACTGAAGGCACTTCTCCTCTCTT
TCTTTTGCTTACTTGGTTGGAAGGAACAAGTCAAGCCATAAAGCTAGCTACTGAACTTCACTTCC
AACTCTTAGACTTACTACTGCCCTGTAAGAACTGACTACTGGCTCTACTGTAAGAACTGACTACT
GCCTATACTTTCACTTCCTACTTGGCTCTACTGGAAGACCTTACTACTGCTCTACTGGAAGAACT
TACTACTGCTCTCTCTCTCTACTGGAAGAACTTACTACTGCACTACTTCGACTTCTTCCCTTTCC
CTACTGCCCTTTCTGTGTACTGATTAAACTCTATTGATTCATTCCCTGACGTGAACCTCTGTATG
TATGTTACTACTGTACTTCCAACTCTCTACTGCTTTCACTCTGTA
Right flanking sequence: Indices 638952 -- 639451
GATTTCCTTCCTTGCAATCCTCTAAGTAACCTGACTTAACCTGAGGAAGACGAGAACAACAGTTA
CATTACAGAAAGGTCAAGTCCTCTCCTCTAAAGAGAACAACACAGTTACATTACGGAAAGGTCAA
GTCCTCTCCTCTAAGGAACGGAAGAGCAAGCAAGACAAGAACAACCAGATAAGATTATTACATTC
CAGGAAAGAAAGAAGGTCAAGATCAAGCTCATTCACTTCTAGAGCACACACAACAGCAGGAACAA
CAGGAACAACAGGAACAACAAGATATTATTACATTCTAGGAGAAAGAGGGAAGTGAAAGTCTTCT
CTTCTAAGTCACTTCTGTAGGAAGCAAGCTAACAGCATTCATTACATACGGGAAGAAGGGGGTAA
AGCTTACCTGACGTCTTAAGAAAGCAAGCATCAGGCAAGCAACACCAACACAATATGAATTACAG
GCAGGAAGCGGTAAAGCTTACCCCTAGTCATGAGCAAGACAACTA
Found at i:639076 original size:48 final size:46
Alignment explanation
Indices: 639003--639095 Score: 159
Period size: 48 Copynumber: 2.0 Consensus size: 46
638993 TGAGGAAGAC
639003 GAGAACAACAGTTACATTACAGAAAGGTCAAGTCCTCTCCTCTAAA
1 GAGAACAACAGTTACATTACAGAAAGGTCAAGTCCTCTCCTCTAAA
*
639049 GAGAACAACACAGTTACATTACGGAAAGGTCAAGTCCTCTCCTCTAA
1 GAGAAC-A-ACAGTTACATTACAGAAAGGTCAAGTCCTCTCCTCTAA
639096 GGAACGGAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 6 0.14
47 1 0.02
48 37 0.84
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.22
Consensus pattern (46 bp):
GAGAACAACAGTTACATTACAGAAAGGTCAAGTCCTCTCCTCTAAA
Left flanking sequence: Indices 638503 -- 639002
TCTTTCTTTTGCTTACTTGGTTGGAAGGAACAAGTCAAGCCATAAAGCTAGCTACTGAACTTCAC
TTCCAACTCTTAGACTTACTACTGCCCTGTAAGAACTGACTACTGGCTCTACTGTAAGAACTGAC
TACTGCCTATACTTTCACTTCCTACTTGGCTCTACTGGAAGACCTTACTACTGCTCTACTGGAAG
AACTTACTACTGCTCTCTCTCTCTACTGGAAGAACTTACTACTGCACTACTTCGACTTCTTCCCT
TTCCCTACTGCCCTTTCTGTGTACTGATTAAACTCTATTGATTCATTCCCTGACGTGAACCTCTG
TATGTATGTTACTACTGTACTTCCAACTCTCTACTGCTTTCACTCTGTATGTATGTATGTTACTA
CTGTACTTCCTCTCTGTATGTTACTACTGTACTTCTTCTCTGTATGTTAGTTCCTACTGGATTTC
CTTCCTTGCAATCCTCTAAGTAACCTGACTTAACCTGAGGAAGAC
Right flanking sequence: Indices 639096 -- 639595
GGAACGGAAGAGCAAGCAAGACAAGAACAACCAGATAAGATTATTACATTCCAGGAAAGAAAGAA
GGTCAAGATCAAGCTCATTCACTTCTAGAGCACACACAACAGCAGGAACAACAGGAACAACAGGA
ACAACAAGATATTATTACATTCTAGGAGAAAGAGGGAAGTGAAAGTCTTCTCTTCTAAGTCACTT
CTGTAGGAAGCAAGCTAACAGCATTCATTACATACGGGAAGAAGGGGGTAAAGCTTACCTGACGT
CTTAAGAAAGCAAGCATCAGGCAAGCAACACCAACACAATATGAATTACAGGCAGGAAGCGGTAA
AGCTTACCCCTAGTCATGAGCAAGACAACTACATTTCCATTAAAGGAAGGTTAAGTAATCTAACG
TGACGAACAACAAGATTATTACATTACAGGAAAGAGGGTAAAGCTTACCTGACGTGACGAACAAC
AAGAACTATTTACATTACAGAAAGGAAGGTAAAGCTACTCCCCTG
Found at i:639215 original size:9 final size:9
Alignment explanation
Indices: 639198--639231 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
639188 GAGCACACAC
*
639198 AACAGCAGG
1 AACAACAGG
639207 AACAACAGG
1 AACAACAGG
639216 AACAACAGG
1 AACAACAGG
639225 AACAACA
1 AACAACA
639232 AGATATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.56, C:0.24, G:0.21, T:0.00
Consensus pattern (9 bp):
AACAACAGG
Left flanking sequence: Indices 638698 -- 639197
AACTTACTACTGCTCTCTCTCTCTACTGGAAGAACTTACTACTGCACTACTTCGACTTCTTCCCT
TTCCCTACTGCCCTTTCTGTGTACTGATTAAACTCTATTGATTCATTCCCTGACGTGAACCTCTG
TATGTATGTTACTACTGTACTTCCAACTCTCTACTGCTTTCACTCTGTATGTATGTATGTTACTA
CTGTACTTCCTCTCTGTATGTTACTACTGTACTTCTTCTCTGTATGTTAGTTCCTACTGGATTTC
CTTCCTTGCAATCCTCTAAGTAACCTGACTTAACCTGAGGAAGACGAGAACAACAGTTACATTAC
AGAAAGGTCAAGTCCTCTCCTCTAAAGAGAACAACACAGTTACATTACGGAAAGGTCAAGTCCTC
TCCTCTAAGGAACGGAAGAGCAAGCAAGACAAGAACAACCAGATAAGATTATTACATTCCAGGAA
AGAAAGAAGGTCAAGATCAAGCTCATTCACTTCTAGAGCACACAC
Right flanking sequence: Indices 639232 -- 639731
AGATATTATTACATTCTAGGAGAAAGAGGGAAGTGAAAGTCTTCTCTTCTAAGTCACTTCTGTAG
GAAGCAAGCTAACAGCATTCATTACATACGGGAAGAAGGGGGTAAAGCTTACCTGACGTCTTAAG
AAAGCAAGCATCAGGCAAGCAACACCAACACAATATGAATTACAGGCAGGAAGCGGTAAAGCTTA
CCCCTAGTCATGAGCAAGACAACTACATTTCCATTAAAGGAAGGTTAAGTAATCTAACGTGACGA
ACAACAAGATTATTACATTACAGGAAAGAGGGTAAAGCTTACCTGACGTGACGAACAACAAGAAC
TATTTACATTACAGAAAGGAAGGTAAAGCTACTCCCCTGACGAAGACAACAACTACAACTACATT
TACATTAAAGGAAGGAAAAGCTACTCCCCTAACATGACGTCTAACAACAACAACAACAACAAGAA
CAATTTACATTACGGAGGAGGAAGGTAAAGCTACTCCCCTAACGT
Found at i:639584 original size:56 final size:54
Alignment explanation
Indices: 639483--639586 Score: 156
Period size: 56 Copynumber: 1.9 Consensus size: 54
639473 AAGTAATCTA
* *
639483 ACGTGACGAACAACAAGATTATTACATTACAGGAAAGAGGGTAAAGCTTACCTG
1 ACGTGACGAACAACAAGACTATTACATTACAGGAAAGAAGGTAAAGCTTACCTG
639537 ACGTGACGAACAACAAGAACTATTTACATTACA-GAAAGGAAGGTAAAGCT
1 ACGTGACGAACAACAAG-ACTA-TTACATTACAGGAAA-GAAGGTAAAGCT
639587 ACTCCCCTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
54 17 0.38
55 7 0.16
56 21 0.47
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.19
Consensus pattern (54 bp):
ACGTGACGAACAACAAGACTATTACATTACAGGAAAGAAGGTAAAGCTTACCTG
Left flanking sequence: Indices 638983 -- 639482
TGACTTAACCTGAGGAAGACGAGAACAACAGTTACATTACAGAAAGGTCAAGTCCTCTCCTCTAA
AGAGAACAACACAGTTACATTACGGAAAGGTCAAGTCCTCTCCTCTAAGGAACGGAAGAGCAAGC
AAGACAAGAACAACCAGATAAGATTATTACATTCCAGGAAAGAAAGAAGGTCAAGATCAAGCTCA
TTCACTTCTAGAGCACACACAACAGCAGGAACAACAGGAACAACAGGAACAACAAGATATTATTA
CATTCTAGGAGAAAGAGGGAAGTGAAAGTCTTCTCTTCTAAGTCACTTCTGTAGGAAGCAAGCTA
ACAGCATTCATTACATACGGGAAGAAGGGGGTAAAGCTTACCTGACGTCTTAAGAAAGCAAGCAT
CAGGCAAGCAACACCAACACAATATGAATTACAGGCAGGAAGCGGTAAAGCTTACCCCTAGTCAT
GAGCAAGACAACTACATTTCCATTAAAGGAAGGTTAAGTAATCTA
Right flanking sequence: Indices 639587 -- 640086
ACTCCCCTGACGAAGACAACAACTACAACTACATTTACATTAAAGGAAGGAAAAGCTACTCCCCT
AACATGACGTCTAACAACAACAACAACAACAAGAACAATTTACATTACGGAGGAGGAAGGTAAAG
CTACTCCCCTAACGTCTAACTCTAACTCTAACTTCTAACTCTCTCTAACTCTAACTCTAACAACA
ACTCTAACTCTAACAACAACATTTACATTAAAGAGGAGGAAGGTAAAGCTTACCTGACGTCCAGA
CAAACAACAACATTCTTTACAGACAAACAAGGTAAAGCTAATCTGACGTACACAGAACAAATAGA
AATACAATAAAACAATATTGATATATCTTCCCGGACCACTTACTCTATTTCTTGATTAAAACTTG
ATTGAAAAAAGACTAAAATATTGCTGAATTAGAGTGAACTGTCGGCCTCTCTTTCAAGCTCTTGT
TCCAGTCTTTTTTGTTGAGTCAAAGTAACGGAAGAAACCAATAGT
Found at i:639606 original size:56 final size:53
Alignment explanation
Indices: 639486--639651 Score: 147
Period size: 56 Copynumber: 3.0 Consensus size: 53
639476 TAATCTAACG
* * ** *
639486 TGACGAACAACAAGATTATTACATTACAGGAAA-GAGGGTAAAGCTTACCTGACG
1 TGACGAACAACAAGACTATTACATTACAGGAAAGGAAGGTAAAGC-TA-CTCCCC
639540 TGACGAACAACAAGAACTATTTACATTACA-GAAAGGAAGGTAAAGCTACTCCCC
1 TGACGAACAACAAG-ACTA-TTACATTACAGGAAAGGAAGGTAAAGCTACTCCCC
* * * ** *
639594 TGACGAAGACAACAACTACAACTACATTTACATTAAAGGAAGGAAAAGCTACTCCCC
1 TGACG-A-ACAACAA-GACTATTACA-TTACAGGAAAGGAAGGTAAAGCTACTCCCC
639651 T
1 T
639652 AACATGACGT
Statistics
Matches: 94, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
54 22 0.23
55 14 0.15
56 35 0.37
57 23 0.24
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (53 bp):
TGACGAACAACAAGACTATTACATTACAGGAAAGGAAGGTAAAGCTACTCCCC
Left flanking sequence: Indices 638986 -- 639485
CTTAACCTGAGGAAGACGAGAACAACAGTTACATTACAGAAAGGTCAAGTCCTCTCCTCTAAAGA
GAACAACACAGTTACATTACGGAAAGGTCAAGTCCTCTCCTCTAAGGAACGGAAGAGCAAGCAAG
ACAAGAACAACCAGATAAGATTATTACATTCCAGGAAAGAAAGAAGGTCAAGATCAAGCTCATTC
ACTTCTAGAGCACACACAACAGCAGGAACAACAGGAACAACAGGAACAACAAGATATTATTACAT
TCTAGGAGAAAGAGGGAAGTGAAAGTCTTCTCTTCTAAGTCACTTCTGTAGGAAGCAAGCTAACA
GCATTCATTACATACGGGAAGAAGGGGGTAAAGCTTACCTGACGTCTTAAGAAAGCAAGCATCAG
GCAAGCAACACCAACACAATATGAATTACAGGCAGGAAGCGGTAAAGCTTACCCCTAGTCATGAG
CAAGACAACTACATTTCCATTAAAGGAAGGTTAAGTAATCTAACG
Right flanking sequence: Indices 639652 -- 640151
AACATGACGTCTAACAACAACAACAACAACAAGAACAATTTACATTACGGAGGAGGAAGGTAAAG
CTACTCCCCTAACGTCTAACTCTAACTCTAACTTCTAACTCTCTCTAACTCTAACTCTAACAACA
ACTCTAACTCTAACAACAACATTTACATTAAAGAGGAGGAAGGTAAAGCTTACCTGACGTCCAGA
CAAACAACAACATTCTTTACAGACAAACAAGGTAAAGCTAATCTGACGTACACAGAACAAATAGA
AATACAATAAAACAATATTGATATATCTTCCCGGACCACTTACTCTATTTCTTGATTAAAACTTG
ATTGAAAAAAGACTAAAATATTGCTGAATTAGAGTGAACTGTCGGCCTCTCTTTCAAGCTCTTGT
TCCAGTCTTTTTTGTTGAGTCAAAGTAACGGAAGAAACCAATAGTGTTTGGGTTTGGTTGGTTTG
TTTGTTTCAAGACTCAGGAGAAAAGCTTAAGCAAGACAAGATGCG
Found at i:639742 original size:6 final size:6
Alignment explanation
Indices: 639725--639795 Score: 85
Period size: 6 Copynumber: 11.8 Consensus size: 6
639715 AGCTACTCCC
639725 CTAACGT CTAACT CTAACT CTAACTT CTAACT CT--CT CTAACT CTAACT
1 CTAAC-T CTAACT CTAACT CTAAC-T CTAACT CTAACT CTAACT CTAACT
*
639773 CTAACAA C-AACT CTAACT CTAAC
1 CTAAC-T CTAACT CTAACT CTAAC
639796 AACAACATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
4 4 0.07
5 1 0.02
6 40 0.70
7 12 0.21
ACGTcount: A:0.34, C:0.34, G:0.01, T:0.31
Consensus pattern (6 bp):
CTAACT
Left flanking sequence: Indices 639225 -- 639724
AACAACAAGATATTATTACATTCTAGGAGAAAGAGGGAAGTGAAAGTCTTCTCTTCTAAGTCACT
TCTGTAGGAAGCAAGCTAACAGCATTCATTACATACGGGAAGAAGGGGGTAAAGCTTACCTGACG
TCTTAAGAAAGCAAGCATCAGGCAAGCAACACCAACACAATATGAATTACAGGCAGGAAGCGGTA
AAGCTTACCCCTAGTCATGAGCAAGACAACTACATTTCCATTAAAGGAAGGTTAAGTAATCTAAC
GTGACGAACAACAAGATTATTACATTACAGGAAAGAGGGTAAAGCTTACCTGACGTGACGAACAA
CAAGAACTATTTACATTACAGAAAGGAAGGTAAAGCTACTCCCCTGACGAAGACAACAACTACAA
CTACATTTACATTAAAGGAAGGAAAAGCTACTCCCCTAACATGACGTCTAACAACAACAACAACA
ACAAGAACAATTTACATTACGGAGGAGGAAGGTAAAGCTACTCCC
Right flanking sequence: Indices 639796 -- 640295
AACAACATTTACATTAAAGAGGAGGAAGGTAAAGCTTACCTGACGTCCAGACAAACAACAACATT
CTTTACAGACAAACAAGGTAAAGCTAATCTGACGTACACAGAACAAATAGAAATACAATAAAACA
ATATTGATATATCTTCCCGGACCACTTACTCTATTTCTTGATTAAAACTTGATTGAAAAAAGACT
AAAATATTGCTGAATTAGAGTGAACTGTCGGCCTCTCTTTCAAGCTCTTGTTCCAGTCTTTTTTG
TTGAGTCAAAGTAACGGAAGAAACCAATAGTGTTTGGGTTTGGTTGGTTTGTTTGTTTCAAGACT
CAGGAGAAAAGCTTAAGCAAGACAAGATGCGTGCGTTCACTCTTTCTTTTCCCTGCTCACTAACT
CTTTCCCCTTCTCCGTAACTTGTTGATTGAATTAGTATTCATTCTTTGGTGCTTGCTTTACTTTA
GCTTTAACTGTCAAAGGATTGATTCCTTCCTTAACGCTTGGTATT
Found at i:639786 original size:18 final size:18
Alignment explanation
Indices: 639763--639801 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
639753 AACTCTCTCT
639763 AACTCTAACTCTAACAAC
1 AACTCTAACTCTAACAAC
639781 AACTCTAACTCTAACAAC
1 AACTCTAACTCTAACAAC
639799 AAC
1 AAC
639802 ATTTACATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (18 bp):
AACTCTAACTCTAACAAC
Left flanking sequence: Indices 639263 -- 639762
AGTGAAAGTCTTCTCTTCTAAGTCACTTCTGTAGGAAGCAAGCTAACAGCATTCATTACATACGG
GAAGAAGGGGGTAAAGCTTACCTGACGTCTTAAGAAAGCAAGCATCAGGCAAGCAACACCAACAC
AATATGAATTACAGGCAGGAAGCGGTAAAGCTTACCCCTAGTCATGAGCAAGACAACTACATTTC
CATTAAAGGAAGGTTAAGTAATCTAACGTGACGAACAACAAGATTATTACATTACAGGAAAGAGG
GTAAAGCTTACCTGACGTGACGAACAACAAGAACTATTTACATTACAGAAAGGAAGGTAAAGCTA
CTCCCCTGACGAAGACAACAACTACAACTACATTTACATTAAAGGAAGGAAAAGCTACTCCCCTA
ACATGACGTCTAACAACAACAACAACAACAAGAACAATTTACATTACGGAGGAGGAAGGTAAAGC
TACTCCCCTAACGTCTAACTCTAACTCTAACTTCTAACTCTCTCT
Right flanking sequence: Indices 639802 -- 640301
ATTTACATTAAAGAGGAGGAAGGTAAAGCTTACCTGACGTCCAGACAAACAACAACATTCTTTAC
AGACAAACAAGGTAAAGCTAATCTGACGTACACAGAACAAATAGAAATACAATAAAACAATATTG
ATATATCTTCCCGGACCACTTACTCTATTTCTTGATTAAAACTTGATTGAAAAAAGACTAAAATA
TTGCTGAATTAGAGTGAACTGTCGGCCTCTCTTTCAAGCTCTTGTTCCAGTCTTTTTTGTTGAGT
CAAAGTAACGGAAGAAACCAATAGTGTTTGGGTTTGGTTGGTTTGTTTGTTTCAAGACTCAGGAG
AAAAGCTTAAGCAAGACAAGATGCGTGCGTTCACTCTTTCTTTTCCCTGCTCACTAACTCTTTCC
CCTTCTCCGTAACTTGTTGATTGAATTAGTATTCATTCTTTGGTGCTTGCTTTACTTTAGCTTTA
ACTGTCAAAGGATTGATTCCTTCCTTAACGCTTGGTATTGGTTAT
Found at i:640602 original size:13 final size:13
Alignment explanation
Indices: 640584--640609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
640574 ACACCTCTTT
640584 CCTTTGTCCCTTC
1 CCTTTGTCCCTTC
640597 CCTTTGTCCCTTC
1 CCTTTGTCCCTTC
640610 TTGAACTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.08, T:0.46
Consensus pattern (13 bp):
CCTTTGTCCCTTC
Left flanking sequence: Indices 640084 -- 640583
AGTGTTTGGGTTTGGTTGGTTTGTTTGTTTCAAGACTCAGGAGAAAAGCTTAAGCAAGACAAGAT
GCGTGCGTTCACTCTTTCTTTTCCCTGCTCACTAACTCTTTCCCCTTCTCCGTAACTTGTTGATT
GAATTAGTATTCATTCTTTGGTGCTTGCTTTACTTTAGCTTTAACTGTCAAAGGATTGATTCCTT
CCTTAACGCTTGGTATTGGTTATTCTTTCTTCTCGATCTGATTGGTCGCTTCGTCCCTTAGCTTT
GGTTTTGTCTGTCTCCTTAATGAACTACTTCCTTACACCGTCTGTCTTTCCGTAACCTAGTTTCT
TCATCATAGATGTAGGACTTAACTAACTACTCTCTCTCTGGTCTCTTTTGAATCACTTGTCGGTA
AAAGAAAGGATTGATAGAGAATGTGGCTGACTTCTTGACTTCTTTCCGCTTTCAAGACTGAAGAG
TACGTAAACTAAGACTGAATGATTAGACTCAACAAACACCTCTTT
Right flanking sequence: Indices 640610 -- 641109
TTGAACTGTAAGAGAAGAAGAGGGTTAAGCTCATGAACTACTTAACCTCTATTAGTGGAACCTCG
TCAACGGTGGTTTAGCTATTCGAGAACACGAGAAAGCAGTCTGCAGGTCTCAAACAAGGAAAGGC
CCGTATTTGTGTTCTTATTCAATCCGTCGGCTCTACAGGAAGCTCTCATGGGTTCTTTCTACTTA
CACTGAAGAGAAAGTAACGCTAAGCTCATTCATGATCCTATTCTTTCACAAGTAAAGACTAAACT
CCTCTTCTCATTCTCCTTAACTCCTTCACTTGACCTGGAACCACTATCAGGAAGTGTCCTCGCTC
GGATTCCTAGTTAGCCGTCGTAACCAACCTATCTTTTGCTTATTCTCTGAATCTTTACAGTAGAA
AAGGAAAGCAAAGAAGGATTAATCAGACTTGCCAAGAAAGAGACTGACTATCTCTCCTGATTGAA
CAAGAACAAAGTCAAGAAAGAAAGAAGACTACTCCGCTCCTCCTG
Found at i:641290 original size:19 final size:19
Alignment explanation
Indices: 641266--641318 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
641256 GTCTATTCTA
641266 TTACCTTAGGAGTATATGG
1 TTACCTTAGGAGTATATGG
*** *
641285 TTACCTTTCTAGTATATTG
1 TTACCTTAGGAGTATATGG
*
641304 TTACCCTAGGAGTAT
1 TTACCTTAGGAGTAT
641319 GTATTGTATC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (19 bp):
TTACCTTAGGAGTATATGG
Left flanking sequence: Indices 640766 -- 641265
TCGGCTCTACAGGAAGCTCTCATGGGTTCTTTCTACTTACACTGAAGAGAAAGTAACGCTAAGCT
CATTCATGATCCTATTCTTTCACAAGTAAAGACTAAACTCCTCTTCTCATTCTCCTTAACTCCTT
CACTTGACCTGGAACCACTATCAGGAAGTGTCCTCGCTCGGATTCCTAGTTAGCCGTCGTAACCA
ACCTATCTTTTGCTTATTCTCTGAATCTTTACAGTAGAAAAGGAAAGCAAAGAAGGATTAATCAG
ACTTGCCAAGAAAGAGACTGACTATCTCTCCTGATTGAACAAGAACAAAGTCAAGAAAGAAAGAA
GACTACTCCGCTCCTCCTGCCCACCTCTATACAACTACAACAAGGGTAACTGCAACAAGGCACTC
CCTCACGAGCTACTTCATTCCGAAAGCTCTTACCTAACTTCACTCATTCAATCCTCAAGCTATAT
TTATTCCTCCAATGCTGGAACCTTAATACTCTGTCGTCTATTCTA
Right flanking sequence: Indices 641319 -- 641818
GTATTGTATCTTGTTTGTTACCAGAAGAGTATATTGTTACCCTATGAGTATGTATCTTGTTTGTT
ACCTTTTTAGTATATTGAACAAGAAAGGAAAGACTGACTAAAGATTCATTATCTGATTCCTTACC
TTAAACCTAAAGAACAAGTAAAGACTATCGAAAGCCAAAGAGTTTACTGTCTTACTTACTCTTAC
TGTCTTTGAATAAAAGGAAAGAGGGTTACAAGCAGCTATCTATCTATCCTTTCTTCTCTTTCTCA
TTAATTAAATTAACTTGCATATGAAATACTTGCCCTATGCTTTCTTTACAGTCTTTGTGAAAGAA
GGGAGACAGACTAAAGCTTCATTCACCTTTTCCCTGACTCTGTAAATGTAATAGGTGTTAGTTTA
CGAACTTAACTACTTATTCCTCAAGCAAGACAAGAAGAAAGAAGGAGGCAGGTAGACTAAAGAAC
AATTAATTCATTCCCTTTATTCTTATACTCAATAGGTAAATAGAA
Found at i:641396 original size:46 final size:50
Alignment explanation
Indices: 641284--641400 Score: 134
Period size: 46 Copynumber: 2.4 Consensus size: 50
641274 GGAGTATATG
*
641284 GTTACCTTTCTAGTATATTGTTACCCTAGGAGTATGTATTGTATCTTGTTT
1 GTTACCTTTATAGTATATTGTTACCCTA-GAGTATGTATTGTATCTTGTTT
*** * *
641335 GTTACCAGAAGAGTATATTGTTACCCTA-TG-A-GTA-TGTATCTTGTTT
1 GTTACCTTTATAGTATATTGTTACCCTAGAGTATGTATTGTATCTTGTTT
*
641381 GTTACCTTTTTAGTATATTG
1 GTTACCTTTATAGTATATTG
641401 AACAAGAAAG
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
46 27 0.49
47 3 0.05
48 1 0.02
49 1 0.02
51 23 0.42
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (50 bp):
GTTACCTTTATAGTATATTGTTACCCTAGAGTATGTATTGTATCTTGTTT
Left flanking sequence: Indices 640784 -- 641283
CTCATGGGTTCTTTCTACTTACACTGAAGAGAAAGTAACGCTAAGCTCATTCATGATCCTATTCT
TTCACAAGTAAAGACTAAACTCCTCTTCTCATTCTCCTTAACTCCTTCACTTGACCTGGAACCAC
TATCAGGAAGTGTCCTCGCTCGGATTCCTAGTTAGCCGTCGTAACCAACCTATCTTTTGCTTATT
CTCTGAATCTTTACAGTAGAAAAGGAAAGCAAAGAAGGATTAATCAGACTTGCCAAGAAAGAGAC
TGACTATCTCTCCTGATTGAACAAGAACAAAGTCAAGAAAGAAAGAAGACTACTCCGCTCCTCCT
GCCCACCTCTATACAACTACAACAAGGGTAACTGCAACAAGGCACTCCCTCACGAGCTACTTCAT
TCCGAAAGCTCTTACCTAACTTCACTCATTCAATCCTCAAGCTATATTTATTCCTCCAATGCTGG
AACCTTAATACTCTGTCGTCTATTCTATTACCTTAGGAGTATATG
Right flanking sequence: Indices 641401 -- 641900
AACAAGAAAGGAAAGACTGACTAAAGATTCATTATCTGATTCCTTACCTTAAACCTAAAGAACAA
GTAAAGACTATCGAAAGCCAAAGAGTTTACTGTCTTACTTACTCTTACTGTCTTTGAATAAAAGG
AAAGAGGGTTACAAGCAGCTATCTATCTATCCTTTCTTCTCTTTCTCATTAATTAAATTAACTTG
CATATGAAATACTTGCCCTATGCTTTCTTTACAGTCTTTGTGAAAGAAGGGAGACAGACTAAAGC
TTCATTCACCTTTTCCCTGACTCTGTAAATGTAATAGGTGTTAGTTTACGAACTTAACTACTTAT
TCCTCAAGCAAGACAAGAAGAAAGAAGGAGGCAGGTAGACTAAAGAACAATTAATTCATTCCCTT
TATTCTTATACTCAATAGGTAAATAGAAAGAATAGTTTACGGACGGAGGGAAGAAGTAGGTAAAC
TATTGATACTGATACTGAAAGGAAAGACTAAAGCAAGCTAGTCAG
Found at i:646712 original size:29 final size:29
Alignment explanation
Indices: 646622--646713 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
646612 CTGTAAACAA
*
646622 CTCCTTCACCTGTCGGTTTCACAGCATCG
1 CTCCTTCACCTGTCGGTTTCACAGCTTCG
* * * *
646651 CTCCTCTC-CCTCTTGG--TC-GAGCTGTTG
1 CTCCT-TCACCTGTCGGTTTCACAGCT-TCG
646678 AACTCCTTCACCTGTCGGTTTCACAGCTTCG
1 --CTCCTTCACCTGTCGGTTTCACAGCTTCG
646709 CTCCT
1 CTCCT
646714 GAACCTTAAC
Statistics
Matches: 46, Mismatches: 9, Indels: 16
0.65 0.13 0.23
Matches are distributed among these distances:
26 3 0.07
27 4 0.09
28 2 0.04
29 27 0.59
30 2 0.04
31 4 0.09
32 4 0.09
ACGTcount: A:0.11, C:0.38, G:0.17, T:0.34
Consensus pattern (29 bp):
CTCCTTCACCTGTCGGTTTCACAGCTTCG
Left flanking sequence: Indices 646122 -- 646621
TTAATGAGACTGAACAGGAAGGACTAATACTGATTAACCTGATGGAACTTCTCTTTCAAGCAAGT
CAAGACTCTACTCCTTCTCCTTATTAATAAGAGAGACTGAACGAGGTAAAATGGGCTGGCTTGGC
TTCTCCCCTTCGCTTCTATTCCCTGACTGTGACCGGATTGAACTCCGTAACCTTCTTGAACTCCG
GAACCGATATGACCTGAGCTACTCAACCAGAGAAAGATTCATTCACTGTAACTCCTTATTCGTCA
GCCAGATTTCACTTTTTCACATAGGCTGGAGAGAAGGAAGAAGAAACCTCAAACCTGAACCTCGG
CTTCGCTCTTGTCCCTTCAAACACTCCTTCACCTATTTCTTCTTTAACTTCTTTATGAGTCAGGG
GAAGTCTTCACTCTCGATTCATTCTTTATGCATTCTTGATCTTCTCCTTTACTTGAACAGGGTAA
AGCGGTAAACTCCTGTCCCTGATTGATTGAACGAACTGTAAACAA
Right flanking sequence: Indices 646714 -- 647213
GAACCTTAACTTCTCTCCTTCCTTTCTTTAACAGTAAATTCAATAACTACTTGACCTTCCCCTAT
CGGTCTGTCTCATTGCTTGGCTTGGCTCCTCTTTCTCTTTATTCAAAGACTGGGTAAACTCCTGA
CTGAACTACTGAAGGAACTGAACTCCGGCTCCTGACCTATTCTTTTACTCGGTAAACAAGTCTCA
ACTCCTTTCCTTATTCATTCTTGATCTTCTCCTCTTTATTCAAAGACTGTAAAGTGGCTGGCTTC
GCTCTTTTCCTTAGCTTTGGTTTTTTCTCCTGCACTTCTCTAGGTGGAACTATTCTTTCACGAGG
TAACTAGGCTGGCTGGCTGATCTGTTCCTGACCCTATTCATTGTCGGTCGGTCTCACAATTCCAT
TTACTATTACTTCTTGAACAAGCAAGGTAAATAGGTTGGTTATAGGTTAAAGGAAGAAAAGAAGA
AGAAAGAGATGCATTCTCCGGAACAGGAAGGAAAGACTGAACCAA
Found at i:647797 original size:4 final size:4
Alignment explanation
Indices: 647788--647835 Score: 60
Period size: 4 Copynumber: 12.0 Consensus size: 4
647778 TCCGGAACTG
* * * *
647788 GCTT GCTT GCTT GCTG GCTT TCTT GCTT GCTG GCTT TCTT GCTT GCTT
1 GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT
647836 TCTCACTCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
GCTT
Left flanking sequence: Indices 647288 -- 647787
TATTTAATGGATACCTCTCCCTATATTTCGGGTCATTTTAGAGGGAATTAGTTCGGAAAGAGACT
GAACGAAATCACTACTGAACCTATTTATTCTGGAACTGGAAACAAGGGAAAGAAAAGAAAAGAAG
AATCAGGCAGGAAGGAAAGACGAAAGCAAAGAGATAGTTCAACCTTCACCCTCTCACCTCTACAC
CTCGGTTTCCCAATTTCATTTCCTGCCCCTCTCCCTCTCGGTCGAGCTCTTTCACCCCTCGTAAA
CTCGGTTTCCTTTCCCAATTTCATTGCCTGCCCCTCTCCCTCTCGGTCGAGCTCTTTCACCCCTC
TACAACTATCTGAAGGTCAAGCTCCGGAACAGGAAGTCAAGACTATCGAAGAATGAGACTGTAAA
GACCATTTCTTCTTTTTTCTATCCTCTCCCTATTTTTTGGGATAAAATCTAGTAAAGGTAATGTT
GAAGTCAAGACTGCTTATCCTTATTATAGAGAGTTTCCGGAACTG
Right flanking sequence: Indices 647836 -- 648335
TCTCACTCTTTCACTCTGACGGACCGACCAACAAGAAATTCATTCTATCTCTCCCTTATTTTTAG
GGATAAAAGAGAGGTATTTAGGGTGAGAGGTAATTCTCAAGTCAATCCTTCAGATTCATGAGAGT
GAACTGGAAGTCAAGACTATCGAAGAATCCATGAGAGTGAACCTATCTTTACAGTGAAAGAAGAA
ATGAAGGGAGAAGAAGAATGAGCTACTGAACGATCAAACACTCTTGAACTCGTTAAAAGCCAAAG
AGAAAGGGGAAAGAACACCCGGACTGTCTACTCTTCTCTTATGTGTGTGGCCATGGGCTTTCCCT
TCTGTAAAGTCTATAAGGATTCTATATAAGGATCAAGTCTGGGCTAAGCACCTTTGGGTCCCCCT
CTTAGTTCAATTTCGCTCGAAAGAAATGGTAATCTGTCTGTCTTCCCTTCATTTTTTATTCACTT
ATATTCTCTTCTTCTTCGATTCCTTTCCATTAAGGTAGGTATATA
Found at i:647806 original size:16 final size:16
Alignment explanation
Indices: 647785--647834 Score: 91
Period size: 16 Copynumber: 3.1 Consensus size: 16
647775 GTTTCCGGAA
*
647785 CTGGCTTGCTTGCTTG
1 CTGGCTTTCTTGCTTG
647801 CTGGCTTTCTTGCTTG
1 CTGGCTTTCTTGCTTG
647817 CTGGCTTTCTTGCTTG
1 CTGGCTTTCTTGCTTG
647833 CT
1 CT
647835 TTCTCACTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.00, C:0.26, G:0.26, T:0.48
Consensus pattern (16 bp):
CTGGCTTTCTTGCTTG
Left flanking sequence: Indices 647285 -- 647784
TCTTATTTAATGGATACCTCTCCCTATATTTCGGGTCATTTTAGAGGGAATTAGTTCGGAAAGAG
ACTGAACGAAATCACTACTGAACCTATTTATTCTGGAACTGGAAACAAGGGAAAGAAAAGAAAAG
AAGAATCAGGCAGGAAGGAAAGACGAAAGCAAAGAGATAGTTCAACCTTCACCCTCTCACCTCTA
CACCTCGGTTTCCCAATTTCATTTCCTGCCCCTCTCCCTCTCGGTCGAGCTCTTTCACCCCTCGT
AAACTCGGTTTCCTTTCCCAATTTCATTGCCTGCCCCTCTCCCTCTCGGTCGAGCTCTTTCACCC
CTCTACAACTATCTGAAGGTCAAGCTCCGGAACAGGAAGTCAAGACTATCGAAGAATGAGACTGT
AAAGACCATTTCTTCTTTTTTCTATCCTCTCCCTATTTTTTGGGATAAAATCTAGTAAAGGTAAT
GTTGAAGTCAAGACTGCTTATCCTTATTATAGAGAGTTTCCGGAA
Right flanking sequence: Indices 647835 -- 648334
TTCTCACTCTTTCACTCTGACGGACCGACCAACAAGAAATTCATTCTATCTCTCCCTTATTTTTA
GGGATAAAAGAGAGGTATTTAGGGTGAGAGGTAATTCTCAAGTCAATCCTTCAGATTCATGAGAG
TGAACTGGAAGTCAAGACTATCGAAGAATCCATGAGAGTGAACCTATCTTTACAGTGAAAGAAGA
AATGAAGGGAGAAGAAGAATGAGCTACTGAACGATCAAACACTCTTGAACTCGTTAAAAGCCAAA
GAGAAAGGGGAAAGAACACCCGGACTGTCTACTCTTCTCTTATGTGTGTGGCCATGGGCTTTCCC
TTCTGTAAAGTCTATAAGGATTCTATATAAGGATCAAGTCTGGGCTAAGCACCTTTGGGTCCCCC
TCTTAGTTCAATTTCGCTCGAAAGAAATGGTAATCTGTCTGTCTTCCCTTCATTTTTTATTCACT
TATATTCTCTTCTTCTTCGATTCCTTTCCATTAAGGTAGGTATAT
Found at i:652663 original size:12 final size:12
Alignment explanation
Indices: 652646--652671 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
652636 TTAAGTATTA
652646 AAAGAGCTAGTC
1 AAAGAGCTAGTC
652658 AAAGAGCTAGTC
1 AAAGAGCTAGTC
652670 AA
1 AA
652672 TTAGTTCAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (12 bp):
AAAGAGCTAGTC
Left flanking sequence: Indices 652146 -- 652645
CTCAGATCTACTCTTTTTTTGAGGAACTGAGTAAACGGCCCTCTAAACGAAATTCGGTAGAACTA
CATTCGGGTCTGATACCAATACTATTTCCATCATTACTATAACCAACCTTAGAAGATCTCATTTT
TGATCTTGAGTAGGTTATGTAGGCACTCGGCCCTACTCGGGGATAGCAATTGGAAATGGCGGGCT
CGACCTTTGACCAAAAATCAAATTAATGAATGAAACAGCTGACGGCGGCGGCGTCAAGGGATTGC
TATACCAGCGCAGCCAGACCAGATTCTATAATGAATTGAATAACGAAAAGCTAACGAACTTAAGG
AAGAACACCCAGTTAATGCATAAATTTCCTTAAGGATCGCAGTGTAATAGCGACTAGCGGACCCA
CCCCCCCGCAGTCAAAATCATTATCCCTTGGAATTTCCATCTTCGAGTTCTTCTGGAAGACCTCA
AGTCACGGCTTCCCACCCAGTCTTAGTGGAATCGCTTAAGTATTA
Right flanking sequence: Indices 652672 -- 653171
TTAGTTCAGTCTTATTATTCCGGCAGTCACTTAGTGCGTCTTCCTTTTAATCAATGGAAAATACA
AGACAATAAAAAACATAGTTCTATTATGTTTATCTTACAGACTTGAAAGTCAAATCAAATAGAAA
AGAAGATTATTCTCAAAATGAGCTTAATCAGCAGACTTCCCAGCGCCAACAGGAGCCTGCAAATT
CAAGATCTATTATTCCTAATAATCTGACTCTTAGTTCGTTAGGGGTCAAAATGAGAGGCCATCAT
AACAAGCCTATGATGAGGAGTAAAGTCTTCTCTACTCATACCCTTCCTGGAACTGATAGCATCTC
CCTCCCCTCTGAATGAATTGCTGCTGGATTTGAGACCGGCACGAGTTGGTCATACAAGTTGCTCA
GCTAAGCCCTTCACAGGTGATGCATCAACATCTTGTAGTCAATCTCATTCCACAATTCCTTCCTC
CATTATTCTTAGGATATCTTTTTTGGGACCAAATCCCTCTCTCAG
Found at i:654657 original size:30 final size:30
Alignment explanation
Indices: 654595--654669 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
654585 GCAATCAACG
* *
654595 GAGTGGCTTTCGCTCCTCTCCCTCTTGGTC
1 GAGTAGCTTTCGCTCCTCTCCCTCATGGTC
* *
654625 GAGTTGCTTTCGCTCCTCTCGCT-ATGGTTC
1 GAGTAGCTTTCGCTCCTCTCCCTCATGG-TC
*
654655 GAGCAGCTTTCGCTC
1 GAGTAGCTTTCGCTC
654670 GTTCGCCTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.07, C:0.33, G:0.24, T:0.36
Consensus pattern (30 bp):
GAGTAGCTTTCGCTCCTCTCCCTCATGGTC
Left flanking sequence: Indices 654095 -- 654594
TCTTTTCATTTCAAATAAATAGGTAAAGGGCCAAGCTACATTCCCTTTGAACCATATCAGGACCT
GACCATAAGAACCTTCTGCAGATCTTCTTATCAATTGTCTTCAAATCAAAACTCAAACCGGCACT
GGCAGTATGAACACAGTACTCAAGTAAACACTTTCATGCTAAGGAGGGCACCCTGAACGAACCTG
TTGTACAGCATATTAGACGGCTTTTCCAGTCCATCTCTATACTCTAGCTTTGATTCTCTCAATTA
GAGTAGAGGCAAACAATCACTAACTGAGAGACTGGCAATCCCAGGTACTTCATTGGCATTTTACC
TTCATTGAAGCCAAGTAGATTTTCAATATTTCACTTTGCAGCATCAGACAGAAAGATCTCCATAG
TAGATTGGACTCTTGGATATGCAGTAAGAACAGAAAGATTTTGGAATTCTTTTAAGCATTGATTG
ACCACAGCAAATCCTTCTCACGAACTAGAGATTTAGCAATCAACG
Right flanking sequence: Indices 654670 -- 655169
GTTCGCCTCGTAAACTCGGTCTCACAGCTTTCGCTCCTTGGTTTATTGTCTATCGACACCTTTTT
CTTTTGAATTCATTGATAGAGCTTTTGGAGCAGATGTAAAGCACTAGATTCTTCAACGAGTACCA
AGAAGAAATTCATTCACCAGACTAAGAGAAGAAAACAGAACAAAAAGAGTCTTGGCTTAAGCCCA
GCCGCCTCCGGGAATTCATCGGGAGGAAGAGCCCCAAGGGCGCCATATTCTAGGAGCCCAAACTA
TGTGATTGAATAAATCCTCCTACATCTGTTGCGGGTCGAGGACTACGGAACCTTTGACGATATTA
CCTGACCGGAACCAAAGCTTAATGAGAGAGTGAGAGTTTACAGTTAAAGAAGAAAAGGAAAGACA
TGAAAGAAAGAAAGACAAGATGAAACAAAAGAAGAATGAGACTGAACAGGAAGGGCTGAAGAAGA
AGAAAATGAAACTAGAATTATCCGTCACCTATTTCTTCTTTCAAT
Found at i:655407 original size:69 final size:68
Alignment explanation
Indices: 655322--655516 Score: 248
Period size: 69 Copynumber: 2.8 Consensus size: 68
655312 CTTGTCATAG
* *
655322 CTTTTTCCCTTAATAGCTGAAGCTTCAAGCTAATTTTTTCTATCTTTCCCGTATTTTTGGGGTAT
1 CTTTTTCCCTTAATAGCTGAAGCTTCAAG-AAATTTTTTCTATCTTTCCCGTATTTTAGGGGTAT
655387 TTCT
65 TTCT
* ****
655391 CTTTTTCCCTTAATAGCTGGAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
1 CTTTTTCCCTTAATAGCTGAAGCTTCAAG-AAATTTTTTCTATCTTTCCCGTATTTTAGGGGTAT
655456 TTCT
65 TTCT
* ** *
655460 CTTTTTCCCTTAA-GGAAAGCAGCTTCAAGAAATTCTTTTCTATCTTTCCCGTATTTT
1 CTTTTTCCCTTAATAG-CTGAAGCTTCAAGAAATT-TTTTCTATCTTTCCCGTATTTT
655517 GAGGTATAAA
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
68 4 0.04
69 104 0.96
ACGTcount: A:0.22, C:0.21, G:0.13, T:0.45
Consensus pattern (68 bp):
CTTTTTCCCTTAATAGCTGAAGCTTCAAGAAATTTTTTCTATCTTTCCCGTATTTTAGGGGTATT
TCT
Left flanking sequence: Indices 654822 -- 655321
TAAGAGAAGAAAACAGAACAAAAAGAGTCTTGGCTTAAGCCCAGCCGCCTCCGGGAATTCATCGG
GAGGAAGAGCCCCAAGGGCGCCATATTCTAGGAGCCCAAACTATGTGATTGAATAAATCCTCCTA
CATCTGTTGCGGGTCGAGGACTACGGAACCTTTGACGATATTACCTGACCGGAACCAAAGCTTAA
TGAGAGAGTGAGAGTTTACAGTTAAAGAAGAAAAGGAAAGACATGAAAGAAAGAAAGACAAGATG
AAACAAAAGAAGAATGAGACTGAACAGGAAGGGCTGAAGAAGAAGAAAATGAAACTAGAATTATC
CGTCACCTATTTCTTCTTTCAATGAATGAAATCAGGGAGACGAAAGAAAGACAAGATGAAACGAA
AGATGAATGAGAGAGAGAGAGTTTACAGAAAGAGAAGCGAATGAACCTGAACCTGCAAAGATCAT
TAAGAAATTGATTCTATCCAGCATAGGGGTAAAACCTTGTCATAG
Right flanking sequence: Indices 655517 -- 656016
GAGGTATAAAAGAGTCCATTTTCCCTGATTTCCCTCGGTAACTCAACTGTAAACACTCAAAAAAC
AAGAAATCAGTCTATCTTCTGTCTATTTTTTTGGATAAAAGTCTATCTTTCCCGTATTTTTGGGG
ATCAAATGGATGCTTTACCCTATTTTTGGGGCTATTTTCCTTGATTTCACTCTTTCACTCTCCTG
TAAACACTCAAAAAACTAGAATGATCCTATCTATCCCGTATTTTTAGGGATAAAATCGAGGTCTT
TTGGGTGAGAGGTAATGAAACTGTCAATCCTCAACTCTCTCTTCTATCTTTCTTTCCCTTCCCTT
ATTTCAGGAAGTAGGTAAACTCGTTCTCACTGCTTGCTTCGCACCTTTCCTCTTCATTATCCCCA
AAAAGTCTTGTTTGTGGCCTTCCTTCTCTTCTGGTTAATCCTGAGAGTCAGGGGTCTTTTCTTAT
TTGGGCAGTCACGGGCTCTTTGAGGTCCTCCTAATGAGTCGTGGA
Found at i:659999 original size:58 final size:58
Alignment explanation
Indices: 659931--660227 Score: 193
Period size: 65 Copynumber: 4.9 Consensus size: 58
659921 CTCCACGAGA
* * * **
659931 AGAGGCGCGAAGCTAAGAGACTG-GAAAGGAGAGGAGCGAAGCGGCTCGACCGAGAGGG
1 AGAGGAGCGAAGCGAAGAGACCGAG-AAGGAGAGGAGCGAAGCGGCGAGACCGAGAGGG
** * *
659989 AGAGGAGCGAAGCGGGGAGACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGAGGG
1 AGAGGAGCGAAGCGAAGAGACCGAGAAGGAGAGGAGCGAAGCGGCGAGACCGAGAGGG
** * * *
660047 AGAGGAGCGAAGCGGGGAGACCGAGTTGTAGAGGCGAACGAGCGAAGCGGTGAAGACCGAGAGGG
1 AGAGGAGCGAAGCGAAGAGACCGA---G-A-AGGAG-AGGAGCGAAGCGGCG-AGACCGAGAGGG
** * * * * *
660112 AGAGGAGCGAAGCGGTGAGACCGAGTTTACGAGGCGAACGAGCGAAGCGGTGAAGACTG-GAAAG
1 AGAGGAGCGAAGCGAAGAGACCGAG---A--AGGAG-AGGAGCGAAGCGGCG-AGACCGAG-AGG
660176 G
58 G
**** * *
660177 AGAGGAGCGAAGCGGCTCGACCGAGAGGGAGAGGAGCGAAGCGGGGAGACC
1 AGAGGAGCGAAGCGAAGAGACCGAGAAGGAGAGGAGCGAAGCGGCGAGACC
660228 CTTAATAATG
Statistics
Matches: 203, Mismatches: 24, Indels: 24
0.81 0.10 0.10
Matches are distributed among these distances:
58 75 0.37
59 14 0.07
60 3 0.01
61 1 0.00
62 3 0.01
63 3 0.01
64 16 0.08
65 88 0.43
ACGTcount: A:0.31, C:0.16, G:0.48, T:0.05
Consensus pattern (58 bp):
AGAGGAGCGAAGCGAAGAGACCGAGAAGGAGAGGAGCGAAGCGGCGAGACCGAGAGGG
Left flanking sequence: Indices 659431 -- 659930
AAAAGCCACTTTCTTTTCTGATTAGTAAGTGGACGAATATTCGTTGTATATCTATATTGGACTTG
AGATTTAGCATTGTTTTTTTTCAGTATATATACTCTAATGTTCAGTGAGATTTCCTACTGACGGA
ATCGCTTGAATTAGTTGAAGGAAAGGAGGTGGCTGGTCTCACTGGAGAGGAGAGTTTTGACAGCG
AGGGAGGCAGGGGTGCGTTGGTATCGTATATGTATATATATAAAAGGCTGCATTTAGGAGTGATC
CTTCCCTTTTCTTCCAGTGGCGATCTCACTTGAGAAAGAGAGTCTGTGCTTAGTAGCGCGTAAAC
AGAACACGTAGCTCCATAGCGGAACTAGTCACTGGCTACAGGTTTCTTTCCTACCTTAGGACCGG
AGGCAGCCGAGAATGTGATGTCAAAAGGACCAACGACGATGAAGGAGAAGAAAGAAGGAGTAGGA
GCTAGCCTGCCTTTATAAGAGTAGGGGCGAAGAAGCTCCACGAGA
Right flanking sequence: Indices 660228 -- 660727
CTTAATAATGGGCGAACGCGCGAAGCTAAGAAGACTGTAAAGGAGAGGGGCGGAATCGAATGATT
ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGG
GAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGC
GATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAA
TATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAA
ATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCC
GCGGCCTATTTTCGTTCTCTTCCACGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCT
CCTGGACAGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGG
Found at i:660029 original size:87 final size:92
Alignment explanation
Indices: 659931--660136 Score: 217
Period size: 87 Copynumber: 2.3 Consensus size: 92
659921 CTCCACGAGA
* * * **
659931 AGAGGCGCGAAGCTAAGAGACTG-GAAAGGAGAGGAGCGAAGCGGCTCGACCGA-G-AG-GGAG-
1 AGAGGAGCGAAGCGAAGAGACCGAG-AAGGAGAGGAGCGAAGCGGCGAGACCGATGTAGAGGAGA
* *
659991 AGGAGCGAAGCGG-GGAGACCGAGAGGG
65 ACGAGCGAAGCGGTGAAGACCGAGAGGG
** * * *
660018 AGAGGAGCGAAGCGGGGAGACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGTTGTAGAGGCG
1 AGAGGAGCGAAGCGAAGAGACCGAGAAGGAGAGGAGCGAAGCGGCGAGACCGA--TGTAGAGGAG
660083 AACGAGCGAAGCGGTGAAGACCGAGAGGG
64 AACGAGCGAAGCGGTGAAGACCGAGAGGG
**
660112 AGAGGAGCGAAGCGGTGAGACCGAG
1 AGAGGAGCGAAGCGAAGAGACCGAG
660137 TTTACGAGGC
Statistics
Matches: 98, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
87 42 0.43
88 1 0.01
90 1 0.01
91 2 0.02
92 3 0.03
93 12 0.12
94 37 0.38
ACGTcount: A:0.32, C:0.16, G:0.49, T:0.04
Consensus pattern (92 bp):
AGAGGAGCGAAGCGAAGAGACCGAGAAGGAGAGGAGCGAAGCGGCGAGACCGATGTAGAGGAGAA
CGAGCGAAGCGGTGAAGACCGAGAGGG
Left flanking sequence: Indices 659431 -- 659930
AAAAGCCACTTTCTTTTCTGATTAGTAAGTGGACGAATATTCGTTGTATATCTATATTGGACTTG
AGATTTAGCATTGTTTTTTTTCAGTATATATACTCTAATGTTCAGTGAGATTTCCTACTGACGGA
ATCGCTTGAATTAGTTGAAGGAAAGGAGGTGGCTGGTCTCACTGGAGAGGAGAGTTTTGACAGCG
AGGGAGGCAGGGGTGCGTTGGTATCGTATATGTATATATATAAAAGGCTGCATTTAGGAGTGATC
CTTCCCTTTTCTTCCAGTGGCGATCTCACTTGAGAAAGAGAGTCTGTGCTTAGTAGCGCGTAAAC
AGAACACGTAGCTCCATAGCGGAACTAGTCACTGGCTACAGGTTTCTTTCCTACCTTAGGACCGG
AGGCAGCCGAGAATGTGATGTCAAAAGGACCAACGACGATGAAGGAGAAGAAAGAAGGAGTAGGA
GCTAGCCTGCCTTTATAAGAGTAGGGGCGAAGAAGCTCCACGAGA
Right flanking sequence: Indices 660137 -- 660636
TTTACGAGGCGAACGAGCGAAGCGGTGAAGACTGGAAAGGAGAGGAGCGAAGCGGCTCGACCGAG
AGGGAGAGGAGCGAAGCGGGGAGACCCTTAATAATGGGCGAACGCGCGAAGCTAAGAAGACTGTA
AAGGAGAGGGGCGGAATCGAATGATTATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCA
CTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGT
TTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGT
CTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGA
TGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGAT
CCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTC
Found at i:660066 original size:17 final size:16
Alignment explanation
Indices: 659986--660062 Score: 76
Period size: 16 Copynumber: 5.2 Consensus size: 16
659976 TCGACCGAGA
659986 GGGAGAGGAGCGAAGC
1 GGGAGAGGAGCGAAGC
* *
660002 GGG-GA-GACCG-AGA
1 GGGAGAGGAGCGAAGC
660015 GGGAGAGGAGCGAAGC
1 GGGAGAGGAGCGAAGC
* *
660031 GGG-GA-GACCG-AGA
1 GGGAGAGGAGCGAAGC
660044 GGGAGAGGAGCGAAGC
1 GGGAGAGGAGCGAAGC
660060 GGG
1 GGG
660063 GAGACCGAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
13 10 0.21
14 12 0.26
15 12 0.26
16 13 0.28
ACGTcount: A:0.30, C:0.13, G:0.57, T:0.00
Consensus pattern (16 bp):
GGGAGAGGAGCGAAGC
Left flanking sequence: Indices 659486 -- 659985
ATTGGACTTGAGATTTAGCATTGTTTTTTTTCAGTATATATACTCTAATGTTCAGTGAGATTTCC
TACTGACGGAATCGCTTGAATTAGTTGAAGGAAAGGAGGTGGCTGGTCTCACTGGAGAGGAGAGT
TTTGACAGCGAGGGAGGCAGGGGTGCGTTGGTATCGTATATGTATATATATAAAAGGCTGCATTT
AGGAGTGATCCTTCCCTTTTCTTCCAGTGGCGATCTCACTTGAGAAAGAGAGTCTGTGCTTAGTA
GCGCGTAAACAGAACACGTAGCTCCATAGCGGAACTAGTCACTGGCTACAGGTTTCTTTCCTACC
TTAGGACCGGAGGCAGCCGAGAATGTGATGTCAAAAGGACCAACGACGATGAAGGAGAAGAAAGA
AGGAGTAGGAGCTAGCCTGCCTTTATAAGAGTAGGGGCGAAGAAGCTCCACGAGAAGAGGCGCGA
AGCTAAGAGACTGGAAAGGAGAGGAGCGAAGCGGCTCGACCGAGA
Right flanking sequence: Indices 660063 -- 660562
GAGACCGAGTTGTAGAGGCGAACGAGCGAAGCGGTGAAGACCGAGAGGGAGAGGAGCGAAGCGGT
GAGACCGAGTTTACGAGGCGAACGAGCGAAGCGGTGAAGACTGGAAAGGAGAGGAGCGAAGCGGC
TCGACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCCTTAATAATGGGCGAACGCGCGAAGCTAAG
AAGACTGTAAAGGAGAGGGGCGGAATCGAATGATTATGATCTCGACAATGAGACAAAGCCAAGAG
GGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCG
TATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAA
GCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCT
CCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACG
Found at i:660115 original size:65 final size:65
Alignment explanation
Indices: 659978--660191 Score: 293
Period size: 65 Copynumber: 3.4 Consensus size: 65
659968 GAAGCGGCTC
* * *
659978 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGA---G-AG-GGAG-AGGAGCGAAGCGG-GGA
1 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGTTGTAGAGGCGAACGAGCGAAGCGGTGAA
660036 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGTTGTAGAGGCGAACGAGCGAAGCGGTGAA
1 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGTTGTAGAGGCGAACGAGCGAAGCGGTGAA
*
660101 GACCGAGAGGGAGAGGAGCGAAGCGGTGAGACCGAGTT-TACGAGGCGAACGAGCGAAGCGGTGA
1 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGTTGTA-GAGGCGAACGAGCGAAGCGGTGA
660165 A
65 A
* *
660166 GACTG-GAAAGGAGAGGAGCGAAGCGG
1 GACCGAG-AGGGAGAGGAGCGAAGCGG
660192 CTCGACCGAG
Statistics
Matches: 141, Mismatches: 6, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
58 35 0.25
61 1 0.01
62 2 0.01
63 3 0.02
64 15 0.11
65 85 0.60
ACGTcount: A:0.31, C:0.15, G:0.49, T:0.05
Consensus pattern (65 bp):
GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGTTGTAGAGGCGAACGAGCGAAGCGGTGAA
Left flanking sequence: Indices 659478 -- 659977
ATATCTATATTGGACTTGAGATTTAGCATTGTTTTTTTTCAGTATATATACTCTAATGTTCAGTG
AGATTTCCTACTGACGGAATCGCTTGAATTAGTTGAAGGAAAGGAGGTGGCTGGTCTCACTGGAG
AGGAGAGTTTTGACAGCGAGGGAGGCAGGGGTGCGTTGGTATCGTATATGTATATATATAAAAGG
CTGCATTTAGGAGTGATCCTTCCCTTTTCTTCCAGTGGCGATCTCACTTGAGAAAGAGAGTCTGT
GCTTAGTAGCGCGTAAACAGAACACGTAGCTCCATAGCGGAACTAGTCACTGGCTACAGGTTTCT
TTCCTACCTTAGGACCGGAGGCAGCCGAGAATGTGATGTCAAAAGGACCAACGACGATGAAGGAG
AAGAAAGAAGGAGTAGGAGCTAGCCTGCCTTTATAAGAGTAGGGGCGAAGAAGCTCCACGAGAAG
AGGCGCGAAGCTAAGAGACTGGAAAGGAGAGGAGCGAAGCGGCTC
Right flanking sequence: Indices 660192 -- 660691
CTCGACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCCTTAATAATGGGCGAACGCGCGAAGCTAA
GAAGACTGTAAAGGAGAGGGGCGGAATCGAATGATTATGATCTCGACAATGAGACAAAGCCAAGA
GGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGC
GTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGA
AGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGC
TCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGC
CGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCACGCCC
GGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACAG
Found at i:660227 original size:29 final size:29
Alignment explanation
Indices: 659958--660227 Score: 263
Period size: 29 Copynumber: 8.8 Consensus size: 29
659948 AGACTGGAAA
***
659958 GGAGAGGAGCGAAGCGGCTCGACCGAGAG
1 GGAGAGGAGCGAAGCGGGGAGACCGAGAG
659987 GGAGAGGAGCGAAGCGGGGAGACCGAGAG
1 GGAGAGGAGCGAAGCGGGGAGACCGAGAG
660016 GGAGAGGAGCGAAGCGGGGAGACCGAGAG
1 GGAGAGGAGCGAAGCGGGGAGACCGAGAG
660045 GGAGAGGAGCGAAGCGGGGAGACCGAGTTGTAG
1 GGAGAGGAGCGAAGCGGGGAGACCGA---G-AG
* * *
660078 AGGCGAACGAGCGAAGCGGTGAAGACCGAGAG
1 -GGAG-AGGAGCGAAGCGG-GGAGACCGAGAG
*
660110 GGAGAGGAGCGAAGCGGTGAGACCGAGTTTACG
1 GGAGAGGAGCGAAGCGGGGAGACCGAG---A-G
* * * * *
660143 AGGCGAACGAGCGAAGCGGTGAAGACTG-GAAA
1 -GGAG-AGGAGCGAAGCGG-GGAGACCGAG-AG
***
660175 GGAGAGGAGCGAAGCGGCTCGACCGAGAG
1 GGAGAGGAGCGAAGCGGGGAGACCGAGAG
660204 GGAGAGGAGCGAAGCGGGGAGACC
1 GGAGAGGAGCGAAGCGGGGAGACC
660228 CTTAATAATG
Statistics
Matches: 199, Mismatches: 27, Indels: 30
0.78 0.11 0.12
Matches are distributed among these distances:
29 115 0.58
30 25 0.13
31 6 0.03
32 4 0.02
33 5 0.03
34 6 0.03
35 25 0.13
36 13 0.07
ACGTcount: A:0.30, C:0.16, G:0.49, T:0.04
Consensus pattern (29 bp):
GGAGAGGAGCGAAGCGGGGAGACCGAGAG
Left flanking sequence: Indices 659458 -- 659957
AGTGGACGAATATTCGTTGTATATCTATATTGGACTTGAGATTTAGCATTGTTTTTTTTCAGTAT
ATATACTCTAATGTTCAGTGAGATTTCCTACTGACGGAATCGCTTGAATTAGTTGAAGGAAAGGA
GGTGGCTGGTCTCACTGGAGAGGAGAGTTTTGACAGCGAGGGAGGCAGGGGTGCGTTGGTATCGT
ATATGTATATATATAAAAGGCTGCATTTAGGAGTGATCCTTCCCTTTTCTTCCAGTGGCGATCTC
ACTTGAGAAAGAGAGTCTGTGCTTAGTAGCGCGTAAACAGAACACGTAGCTCCATAGCGGAACTA
GTCACTGGCTACAGGTTTCTTTCCTACCTTAGGACCGGAGGCAGCCGAGAATGTGATGTCAAAAG
GACCAACGACGATGAAGGAGAAGAAAGAAGGAGTAGGAGCTAGCCTGCCTTTATAAGAGTAGGGG
CGAAGAAGCTCCACGAGAAGAGGCGCGAAGCTAAGAGACTGGAAA
Right flanking sequence: Indices 660228 -- 660727
CTTAATAATGGGCGAACGCGCGAAGCTAAGAAGACTGTAAAGGAGAGGGGCGGAATCGAATGATT
ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGG
GAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGC
GATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAA
TATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAA
ATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCC
GCGGCCTATTTTCGTTCTCTTCCACGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCT
CCTGGACAGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGG
Found at i:660242 original size:94 final size:93
Alignment explanation
Indices: 660101--660275 Score: 228
Period size: 94 Copynumber: 1.9 Consensus size: 93
660091 AAGCGGTGAA
* * **
660101 GACCGAGAGGGAGAGGAGCGAAGCGGTGAGACCGAGTTTACGAGGCGAACGAGCGAAGCGGTGAA
1 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACC-ACTTTACGAGGCGAACGAGCGAAGCGAAGAA
660166 GACTGGAAAGGAGAGGAGCGAAGCGGCTC
65 GACTGGAAAGGAGAGGAGCGAAGCGGCTC
* * *
660195 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACC-CTTAATAATG-GGCGAACGCGCGAAGCTAAG
1 GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCACTT--T-ACGAGGCGAACGAGCGAAGCGAAG
*
660258 AAGACTGTAAAGGAGAGG
63 AAGACTGGAAAGGAGAGG
660276 GGCGGAATCG
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 2 0.03
94 66 0.94
95 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.43, T:0.08
Consensus pattern (93 bp):
GACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCACTTTACGAGGCGAACGAGCGAAGCGAAGAAG
ACTGGAAAGGAGAGGAGCGAAGCGGCTC
Left flanking sequence: Indices 659601 -- 660100
ACTGGAGAGGAGAGTTTTGACAGCGAGGGAGGCAGGGGTGCGTTGGTATCGTATATGTATATATA
TAAAAGGCTGCATTTAGGAGTGATCCTTCCCTTTTCTTCCAGTGGCGATCTCACTTGAGAAAGAG
AGTCTGTGCTTAGTAGCGCGTAAACAGAACACGTAGCTCCATAGCGGAACTAGTCACTGGCTACA
GGTTTCTTTCCTACCTTAGGACCGGAGGCAGCCGAGAATGTGATGTCAAAAGGACCAACGACGAT
GAAGGAGAAGAAAGAAGGAGTAGGAGCTAGCCTGCCTTTATAAGAGTAGGGGCGAAGAAGCTCCA
CGAGAAGAGGCGCGAAGCTAAGAGACTGGAAAGGAGAGGAGCGAAGCGGCTCGACCGAGAGGGAG
AGGAGCGAAGCGGGGAGACCGAGAGGGAGAGGAGCGAAGCGGGGAGACCGAGAGGGAGAGGAGCG
AAGCGGGGAGACCGAGTTGTAGAGGCGAACGAGCGAAGCGGTGAA
Right flanking sequence: Indices 660276 -- 660775
GGCGGAATCGAATGATTATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAA
TTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCG
AGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCA
TTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAG
GGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACC
TACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCACGCCCGGGAAGGTGGATCAAAGAA
AGGTAGCTTGCTTCTCTCCTGGACAGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATT
CCTCCTTGCTCGAAGAGCCCCTTTACTAGTAAGGGCGCAGGAAGC
Found at i:663914 original size:19 final size:19
Alignment explanation
Indices: 663890--663929 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
663880 GCTATCAGAT
663890 CAGTGAATAAACCCAAACG
1 CAGTGAATAAACCCAAACG
663909 CAGTGAATAAACCCAAACG
1 CAGTGAATAAACCCAAACG
663928 CA
1 CA
663930 AAGAAGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.28, G:0.15, T:0.10
Consensus pattern (19 bp):
CAGTGAATAAACCCAAACG
Left flanking sequence: Indices 663390 -- 663889
GCATATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGATCTGAATCGTAGTTCAGATTCAA
GTTGGTTCAGTGAGGGCGACCGCGAAAGTCACCGAATAGGTCAGTCTTTTCCTTTTGTCCTATAT
TGAAAATCAAAAAAGCGTGGGAGGACATTGCACAGATGTCCAGGACGGACACGACTTCTTCTAAC
GCTAGAAGACCACTGGAAGACACCCGGGACCAGAGCATGTCGTGAAAGAAGCACACTGGCCGTGC
TTCGACCGTGTCTCCGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCAGGATACCAGG
CCGAGAAACCCGGGCAACCACTACCCTATGTGCTGATCGCTAGCGCATCCAGGGCCCCGGCGCCC
AGCAGAGCTGGAGAGGCCTAGCCGGATCTGAGAAGTGCTAATTCGGTTCGTCTCGACTTCATTCA
AGAACAAACACCCTGGAATCCATAAGAAAACAAGTGCTATCAGAT
Right flanking sequence: Indices 663930 -- 664429
AAGAAGAAAGAGAACTTTCTCGCTCGGTGCCTAAAGCGCACTATGCTCCCCTTCAACAAATGAGA
GTTTTCGGTGGAACCGGTGAACCACGCGAGCAGGTTAGATGCATGCGTGGGACAGAGGGCTCGTA
GTACCCGCTAGCGCAGCTATGCAGTGGAAGGGAAGGAGCCTAAATCAATCGAACGAACCCCCCCT
TTTTTCTTTGATAAAAAACACAGTACAAAGAGATTAGACTTCGGATGAGACTAAGCAGCCACCGA
CCGTTACGACGCGCCCCTGACCCATCTTGATTAAGACCAAACAAACAAAACCTATCAAAAATAGA
GTAGAGCCTAGTTTAAGCTCTCAAACAAATAAATGAGAGAATGGAAAATGATGAGAATATCCACT
AGTAGGGATATATATAGATGGAGAGTCTCTCTCAGTAAAGAGAGTTGTAGATTCGTAGGAAAGGA
GAGTAGCGAAGCAATGAGGCACACAACGAATGAGCGAAGCAACTT
Found at i:667625 original size:22 final size:22
Alignment explanation
Indices: 667597--667640 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
667587 TTTCTAATTC
667597 TAAAGTGATAGTACTATGAATA
1 TAAAGTGATAGTACTATGAATA
667619 TAAAGTGATAGTACTATGAATA
1 TAAAGTGATAGTACTATGAATA
667641 AATCTGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (22 bp):
TAAAGTGATAGTACTATGAATA
Left flanking sequence: Indices 667097 -- 667596
AGCGCGTAGGGCTATAATCGGACAATTCCATCGTGCTATGAGCGGACAATCCCGAAGAAATGGTC
AAATATGGGTCAGAGTTCTAGCAGATCTCCCCATTACCGGGAAACCTACAGAAGTCAGAATGGGA
AGAGGAAAAGGAAATCCTACGGGTTGGGTTGCTCGTGTGTCCACGGGACAAATCCCATTTGAAAT
AGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCACTACATTAGCGGCGCATAAACCATGTTCGT
CAACCAAGTTTGTTCAGTGGTCGTAACCTCATTTATTGGTTAGTGGGGATAAACCGGGCCGGGAT
TCAAAAGAATTGGGCGAAGTGTTTGTTCCCGAACGACAGAAGTGGAAAGACACTAAGGGAGAGGG
AGATACTCCTTGATTTTTGTAATCGCCGAAATTGTACGACGAACCCTTTTGTTCCAGGCGTACGA
CCCCGATACGGTAAGGTTTTTATCAGTAGGCTCGGTTTCTAATTC
Right flanking sequence: Indices 667641 -- 668140
AATCTGAATAAGAAAGAGAAGAGCTCAGATTCCGGAAAGAAAGCTTTATGGGAAAAAGGAAGAAG
AAAAGTATGTATTTATATGGTGGGGGTGAAAGGAATTATCATCATTTTGTTAGGTCTCAATGAGG
GGAGACCGGGTCAGGCGACGGATGCAAGCTAGACTTTGAAGCACAAAATCCAAGATTGAATCAAA
TCAAAGAAGGAAAAATCAACGGGGCGGATCAAGAGGAAGCCTTTATTTACCCCAACGAGAAAATA
GGAGTTGTTCTTCCTACCTAGTCACGCTCCGGTCTCAACATGCTGGGCCGAGGAAGTGTCCGATT
TCCAACATCACATCACTATAATTAATGCTATTAAGACTTTCTGGCTTTGTGAGGAAGATCCCTCC
CACCCACTGGATCATCATGACTCCTACGTTCCGACTTCCAAAGGCGATCCTAAGGGAGAAAGGGA
TAAGGCTGCAAGAAGAACCTAGAGAGGAAGCTCCACCGAAAGAAG
Found at i:674691 original size:4 final size:4
Alignment explanation
Indices: 674682--674716 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
674672 TTTACGAGGT
**
674682 GAAA GAAA GAAA GACT GAAA GAAA GAAA GAAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
674717 GAGGAGAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.26, T:0.03
Consensus pattern (4 bp):
GAAA
Left flanking sequence: Indices 674182 -- 674681
CTATTTATTACCGAAGGCTTAGGCTTCTATGGGACCAGCTGAGCATGAGGGACTCCTTTCAAACA
AAGATAGGGGCACACACACCGATCGATTCGAAAGGCTCTTGTCGGGAAGAATTTCATCTAACATA
GAATAGCCTGATAGAGTATAGAGTCTAAAGGAAAGGGGCTCTCTAAGTGATGGGCTTGAGGCCGG
AGTTCGAGAATCTTAGATCCTCAATTCAACATCGAGTTACTCCACCAGACATTGAGAGAGCTCTT
TCTGATGTGAGAGGGAGGAGACTCGACTTGAGCCCCAAAACTAGGTTGGTTGGGTGCAGGGGGTA
GATCTATCTTGCGGGTCTTACTCAGGGTGCTTCATCTCAGGTTCTTCCAGCTGAACATGCTGAGG
GGAGAAGGAAGCGAACAATTTATGCCTTTGATCGAGACAAAGAAACTACTCTGATTTGATTACAA
GAATCCCTAACTAACTAAATCATGATAATTCCTTGTTTACGAGGT
Right flanking sequence: Indices 674717 -- 675216
GAGGAGAAGCTCTAAGACCCATAAGTGAAGGAGGTAAGATCAGCCAAGCCGAGTTGTAGAGGTGA
ATGAGTAAGTCGGGAGAGGATCCAGAGAAGAGAAAGAAGCCGAGGGGAAGGGTTGAGGTGGAGTC
TTTCTTCGGTTACTGGGAATAAATAGGAAAAGGAGTGATTGAGAAGATCAAGAATGAATAAGGAG
TAGTTACAGGAGAGGAAAAGAGTGAAAGAATCATCCTACAGCCTATTTGTGTTTGAGTTCAATCT
GGAGAATGAAGAGAGAGTGAAGACTTTCAAGACTTTCAGGGGAAGAGAAAAGAAAGAATGAAGAG
AGAGGAGAGGATCAGATCAAGATCAAGAAGGAATCTTTCGTCTTTCCTTACAGTTAAGTCGAATT
GATTCTTCGAGAGTGTTTACTGTTGAATGAATCTTGAGGATTGACTTCCAGTTCAGTCTCATTCA
TCTTTCGTGTTTACTGTTGAAATAGGGTAAAGATAGACTTTTATC
Found at i:674702 original size:16 final size:16
Alignment explanation
Indices: 674681--674711 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
674671 GTTTACGAGG
674681 TGAAAGAAAGAAAGAC
1 TGAAAGAAAGAAAGAC
674697 TGAAAGAAAGAAAGA
1 TGAAAGAAAGAAAGA
674712 AAGAAGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.65, C:0.03, G:0.26, T:0.06
Consensus pattern (16 bp):
TGAAAGAAAGAAAGAC
Left flanking sequence: Indices 674181 -- 674680
ACTATTTATTACCGAAGGCTTAGGCTTCTATGGGACCAGCTGAGCATGAGGGACTCCTTTCAAAC
AAAGATAGGGGCACACACACCGATCGATTCGAAAGGCTCTTGTCGGGAAGAATTTCATCTAACAT
AGAATAGCCTGATAGAGTATAGAGTCTAAAGGAAAGGGGCTCTCTAAGTGATGGGCTTGAGGCCG
GAGTTCGAGAATCTTAGATCCTCAATTCAACATCGAGTTACTCCACCAGACATTGAGAGAGCTCT
TTCTGATGTGAGAGGGAGGAGACTCGACTTGAGCCCCAAAACTAGGTTGGTTGGGTGCAGGGGGT
AGATCTATCTTGCGGGTCTTACTCAGGGTGCTTCATCTCAGGTTCTTCCAGCTGAACATGCTGAG
GGGAGAAGGAAGCGAACAATTTATGCCTTTGATCGAGACAAAGAAACTACTCTGATTTGATTACA
AGAATCCCTAACTAACTAAATCATGATAATTCCTTGTTTACGAGG
Right flanking sequence: Indices 674712 -- 675211
AAGAAGAGGAGAAGCTCTAAGACCCATAAGTGAAGGAGGTAAGATCAGCCAAGCCGAGTTGTAGA
GGTGAATGAGTAAGTCGGGAGAGGATCCAGAGAAGAGAAAGAAGCCGAGGGGAAGGGTTGAGGTG
GAGTCTTTCTTCGGTTACTGGGAATAAATAGGAAAAGGAGTGATTGAGAAGATCAAGAATGAATA
AGGAGTAGTTACAGGAGAGGAAAAGAGTGAAAGAATCATCCTACAGCCTATTTGTGTTTGAGTTC
AATCTGGAGAATGAAGAGAGAGTGAAGACTTTCAAGACTTTCAGGGGAAGAGAAAAGAAAGAATG
AAGAGAGAGGAGAGGATCAGATCAAGATCAAGAAGGAATCTTTCGTCTTTCCTTACAGTTAAGTC
GAATTGATTCTTCGAGAGTGTTTACTGTTGAATGAATCTTGAGGATTGACTTCCAGTTCAGTCTC
ATTCATCTTTCGTGTTTACTGTTGAAATAGGGTAAAGATAGACTT
Found at i:675514 original size:31 final size:31
Alignment explanation
Indices: 675479--675542 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
675469 GAATCGAGAG
675479 TTGAGGAGAAGAGAAAGAGAAAGAAGGAATC
1 TTGAGGAGAAGAGAAAGAGAAAGAAGGAATC
**
675510 TTGAGGATCAGAGAAAGAGAAAGAAGGAATC
1 TTGAGGAGAAGAGAAAGAGAAAGAAGGAATC
675541 TT
1 TT
675543 TCGTCTTTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.05, G:0.33, T:0.14
Consensus pattern (31 bp):
TTGAGGAGAAGAGAAAGAGAAAGAAGGAATC
Left flanking sequence: Indices 674979 -- 675478
AGAATGAAGAGAGAGTGAAGACTTTCAAGACTTTCAGGGGAAGAGAAAAGAAAGAATGAAGAGAG
AGGAGAGGATCAGATCAAGATCAAGAAGGAATCTTTCGTCTTTCCTTACAGTTAAGTCGAATTGA
TTCTTCGAGAGTGTTTACTGTTGAATGAATCTTGAGGATTGACTTCCAGTTCAGTCTCATTCATC
TTTCGTGTTTACTGTTGAAATAGGGTAAAGATAGACTTTTATCCCTCAAAATAGGGAGAAGATAA
GATTGATTTAGTGTTGGTCTTTACAGGATAACGAATAAAAGGAGTATTTCTCTTTGACAGTGAAA
GCAAGCCAGCCAGTTCCTTCCATTCCAACCCAGCAAGCAAGAAAGAAAGAGGAGCCCGGTTCAGT
AGCAGTAGCAGTAGCTCAGACGAGGAAAAGGTTTGTTTGTTTTCTCGATAGGATTGACTGACAGT
GAACGATCATGAATAAGTCGTGTTTACAGGAGAATGAATCGAGAG
Right flanking sequence: Indices 675543 -- 676042
TCGTCTTTCCTTACAGTTAAGTCGAATTGATTCTTCGATAGGATTGACTTCAACATTACCTCGGC
CCTAAATACCTCTCTTTTATACCCTAAAATACGGGAAAGATAGAATTTATTTGATTGAAGCGGCT
TTCCTTAAGGGAAAAAGGTCTTACGAACTTTGACCCCTATGCTGGATAGAATTTCTTTTCTTGAA
ACAGCTTTACCGACAGGGGAGGTTCAGGAGCCTACTCTTTCCCTTCTTTCCCTCTTTGTCTTTTC
TTTTCTGTCTCACAATTCCGTTGCCTCGAGAACCGCTCTTTTTCCTTAACTGGAAACGACTTATG
CTACCCTATCATTTGTATGAATCAAGAGAAGCTCAATCCCCTCCCCTCCCTATTCTTTCTCGTCC
GTCGTCTTCTCTTCTTTCTTTATCCGGATTTCAGTGTAAACAAGGTGGCTTCGCTCCTCGCCCTT
TACTTACGGTCTCTTCTCTTTTCTTGTGAGCTATTCTTTCACTGT
Found at i:686790 original size:25 final size:25
Alignment explanation
Indices: 686762--686829 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
686752 GAGAAAGAGA
686762 AAGAAGGAATCTTGAGGAGAAGATC
1 AAGAAGGAATCTTGAGGAGAAGATC
**
686787 AAGAAGGAATCGAGAGGAGAAGATC
1 AAGAAGGAATCTTGAGGAGAAGATC
686812 AAGAAGGAATCTTGAGGA
1 AAGAAGGAATCTTGAGGA
686830 TTGACTGAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.46, C:0.07, G:0.34, T:0.13
Consensus pattern (25 bp):
AAGAAGGAATCTTGAGGAGAAGATC
Left flanking sequence: Indices 686262 -- 686761
TTCAGGTTCAGCAGGAATCGGAAAAGGAAGAAGACGAAAAGGAAGACAGAGTTTACTCTTCTGAA
AGTTATTGAGTCAAGGAGAAGAAACCAAACAAAGTTAAGGAAGGAGTGAAGGAGATAAGGAGTCT
GAAACCAAAGCTAAGGAGCGAAGGGAAGGAATAGAGGGGAAGGATCATGAATCTTGAGTTCAGTC
TTGACGGACTGTGAAGGAGAAGAGAAAGAATGAATCGATAGTGTTTACAGTTAAAGAATAGTGAA
AGAAGCAAAAGGAGAAGATCAAGAATTCATCTTCCTGTTCTGTCTCATGAATAAAAGGAGTGAAA
GCAAGCCAGCCAGTTCTAGTTCTGTCTCATTCTTCTTGAGTTTCGTCTTGACTTACAGTGAACGA
GAATGAATCGATAGTGTTTACAGGAGAGAGAATGAATAAGGAGTCTTTCAACACTTGAAGGGGAA
GATCAAAGAAAGAATGAAGAGAGAGTTTCGGAGAAGAGAAAGAGA
Right flanking sequence: Indices 686830 -- 687329
TTGACTGAGAGTGAACGATCATTGATTCTTCTTTCGTCTTTCCTTCTACTTATGAATTACCTCGG
CCCATTTGACCGGTATTTTATCCCGAAAAATAGGGTCAAGATACACTTTTATACCTCAAAATACG
GGAAAGATAGACTGATTTCTTGTTTTTTGAGTGTTTACAGTTGAGTTACCGAGGGAAATAGGGGA
AAATGGACGATTTTATACCCAAAAATACGGGAAAGATAGAAAAGAATTTCTTTCAGCTCCCGCTA
TTAAGGGAAAAAGAGCGATACCCCAAAAATACGGGAAAGATAGAATTATTTTTCTTTCAGTAGCT
TTTGTTAGTGAAAAAGCTCTTACGAACTTTGACCCCTATGGTGGATACAAAATATTTGATTTCCT
ATGCTGCTATTAAGGGAAAAACCTCTTACGAACTTTGACAGTCATATAGGATAGAATTTCTTTTC
TTTCAGCCGAAGCTATTAGTGAAAAAGCTCTGACGAACTTTGACA
Found at i:696217 original size:32 final size:32
Alignment explanation
Indices: 696178--696243 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
696168 TTATCCATGT
696178 GATAGATGGAACTTCAAGAGCAGCTAGGTCTA
1 GATAGATGGAACTTCAAGAGCAGCTAGGTCTA
696210 GATAGATGGAACTTCAAGAGCAGCTAGGTCTA
1 GATAGATGGAACTTCAAGAGCAGCTAGGTCTA
696242 GA
1 GA
696244 GGGAAGTTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (32 bp):
GATAGATGGAACTTCAAGAGCAGCTAGGTCTA
Left flanking sequence: Indices 695678 -- 696177
TCTACTCCCCTGTAATTGTCTGATTCTTCTTCTTTCACTGTTCAGTCTCACCTTTTCATCTTTCT
TTTCTTTCTTCTCTTTTGCTTGAATTTTCTTCTTCTTCGAGCTTCTCTTTTCCCTCATTCTGTAA
TTCCCTACGTTCCTACTATTTTTCTTTGTATTCCCTCTGGGTGTATATCTTCTTATTTATTAGAG
AAAGGGGGAACTAGTCAAGATAAACTCGCTTCTACCTTACCGTCTTCAATCAACTCTTTCGGCGA
AGGTCAGCTTAAGATTAAGACCAAAGGAAGTTTGTTCCCACGCAGTTCTCTGTGACCTTGATACG
GAGCTGGAGCTTCTAAGATTATGATGAATGCGCCGCTAACTATGGATATGATGCCGGAAATATAC
CTATTTTCTATCACCCTTACATTCTTCCACTAGAAAGATTCTTGTTATTGCTCCTTGACTTTCAA
GAACTTGTATACACTAAGAAAGAAGTCAGTCAGTCTTATCCATGT
Right flanking sequence: Indices 696244 -- 696743
GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAAGAATCTA
AGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGCTACGGATTGGTTGAAATTGAAACC
ATTTAAGTTGAAAGGCATAGTGCTAATACCTAAGTGAACCAGATACCTACTAGAGGCCAAGCAGC
TAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGTATGGAAGATCAATCGGCCA
AAATAACCATGAAAAGGGCGATGATATTATAAGTTTCTTCCTCTTGACCGCCGAATCTGTAACCT
GAATTATCGGATTCATTCTCTGTGGTTTCCCTGATCAAACTAGATAGAAGTTACCAAGGAACCAT
GCATAGCGCTGAATAGGGAGCCAAGCCAATACACCAGCTAGACCTAAGATGTGGAATGGGTGCAT
AAGGATGCTGTGCTCAGCCTGTAATGGAATACAATCATGAAGTTG
Found at i:697048 original size:25 final size:25
Alignment explanation
Indices: 697020--697074 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
697010 CCGATAGCTG
697020 CAGAAGGAAGTAGGGATAATGGGAC
1 CAGAAGGAAGTAGGGATAATGGGAC
697045 CAGAAGGAAGTAGGGATAATGGGAC
1 CAGAAGGAAGTAGGGATAATGGGAC
697070 CAGAA
1 CAGAA
697075 AGAATATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.42, C:0.09, G:0.38, T:0.11
Consensus pattern (25 bp):
CAGAAGGAAGTAGGGATAATGGGAC
Left flanking sequence: Indices 696520 -- 697019
GGCGATGATATTATAAGTTTCTTCCTCTTGACCGCCGAATCTGTAACCTGAATTATCGGATTCAT
TCTCTGTGGTTTCCCTGATCAAACTAGATAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAG
GGAGCCAAGCCAATACACCAGCTAGACCTAAGATGTGGAATGGGTGCATAAGGATGCTGTGCTCA
GCCTGTAATGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCGTCAGGCATACCGTCAGAA
AAGCTTCCTTGACCAATTGGGTAGATCAAGAAACCAGCAGTAGCAGCTGGAACAGGAGCGGAGCA
ACAGCAATCCAAGGACGCCCATACGGAAACTCAGTTCCCACTCTCCCTCCACCCATGTAAGATGC
TACACCAAGTCATCAGTGTAGAACAAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA
TCAACGGAAGCAGCTTCTCAAATTGGGAGTGCAACCCGATAGCTG
Right flanking sequence: Indices 697075 -- 697574
AGAATATTGTTTCCGTCCCCCGAAAGTAGAGATCCAGAAAGAGGTTCACGAATACCATCAATATC
TCCGAGCAGCAATGAAGGCAATAATCAATACGTAAGTTGCGGTCAATAAGGTAGGGATCATCAAA
AGACCAAACCATCCAATGGTTAGCCGGGTTTCAGTGCGGGTTATCCAGTTAGAGAAAGGACCCCA
TAGGCTTTCGCGTCTCTCTTGCAGTCATGGTCAAATCTTGGTTTATTTCATCATGAATCATCAGG
GCCTCCCAAGCACATTCATTCTCTCTCAATAGAAAATTAAAGGCTTGTTATTCCCAGAGTATAAG
ATGACTTATATACCCATGTCAACCAATATCAACATCGAGAAATATAAATAGATATTCCTCCTCTG
CTTTCTTTTAATGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGATGGAGTAGATAACTGATT
TCAAAACTAAGTCAAAAAAGGCCCAACCCGTGCTTGCATTTTTCA
Found at i:714527 original size:13 final size:13
Alignment explanation
Indices: 714511--714546 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
714501 GAAAGAGCTC
714511 GACCAAAGGGCGA
1 GACCAAAGGGCGA
*
714524 GACCGAAGGGCGA
1 GACCAAAGGGCGA
714537 GACCAAAGGG
1 GACCAAAGGG
714547 AGAGGGGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.36, C:0.22, G:0.42, T:0.00
Consensus pattern (13 bp):
GACCAAAGGGCGA
Left flanking sequence: Indices 714011 -- 714510
AATACATAGGTTCCCCGCCCGCCGCTTGACCTTCTCTTACAGTTCCATCTGTCTCAGTCTTCTTT
CGTCTTAGTTTACAGTGAGAGAAGAAATAGGTGAAAGAGGGTGAATGAGTTTACCGAGTCTTCTA
AAGAATACATAGGGACAAGTGATATTGAGTTCAGTCTCTCTCTTTCCGAATGCAATACCTCTTCA
ATGACCTCAAAAATAGGGAATAGCGGTTCAGTAGTTCAGTCGAATAACTCATAAGAGATGGTAAT
GTAATAGAGGGGAGTGAAATCAGGTTCCGGAGTGAGCTCTCATTCAGCCAGAGTTGAGTATTTCT
CTTTGTTTACAGTTCGAAAAGAATAACTAGGCAATCAATATAGGGTTCAGGGGCGAGACCAATAG
AATTAGAATAGGTGGTTCAGGATCGTTAATCTTTCTTCTTCAATCAATTCATTTTGTAAAGGTGA
TTGAGCTCAGCTGTGAGACGGAGTTTACGAGGGGTGAAAGAGCTC
Right flanking sequence: Indices 714547 -- 715046
AGAGGGGCAGGGGAAAGACTAACTACTACTGACTAATACTACTTACCGAGTTCAAGATTATATGA
ATTAGGAGTTTAGCAGTAGACGCAGAGTATAAGAATTAGGAATAGGAGGTTAGCAGTAGAGTTAG
GAATAGGAGTTTAGCAGTAGAGTATCAGAATTAGGAGTAGGAGTTTAGCAGTAGATAGAGTAGAA
GTTCAGTAAAGGACTGCAGTTTAGCAGTAGAGTAGAGGTAGAGTATAAGAATTAGGAATTAGGAG
TTTAGGACGGACAGAGGAGGGAGCGCAGACTCAGACAGAGTTTACAGTTCAAGAGTTAATTCATT
AGCAGCAGCTTTATCAATAGAATAGGTGTAGGTGCAGGAGCGAAGCAGCTTTACCGACAAAGGAG
GGGAAGGAACTTACGCTCAGCTTAGTTACATAAAAGGTTCAGTAAAAGAGCTCCTTCCAGCAGTC
TCATTACATTAACATTAAGCCTCAAATACCGGTAAAGAAAGTCAG
Found at i:714673 original size:34 final size:33
Alignment explanation
Indices: 714635--714731 Score: 109
Period size: 34 Copynumber: 3.1 Consensus size: 33
714625 CAGTAGACGC
*
714635 AGAGTATAAGAATTAGGAATAGGAGGTTAGCAGT
1 AGAGTAT-AGAATTAGGAATAGGAGTTTAGCAGT
714669 --AG---AG--TTAGGAATAGGAGTTTAGCAGT
1 AGAGTATAGAATTAGGAATAGGAGTTTAGCAGT
*
714695 AGAGTATCAGAATTAGGAGTAGGAGTTTAGCAGT
1 AGAGTAT-AGAATTAGGAATAGGAGTTTAGCAGT
714729 AGA
1 AGA
714732 TAGAGTAGAA
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
26 21 0.40
28 4 0.08
32 4 0.08
34 24 0.45
ACGTcount: A:0.38, C:0.04, G:0.33, T:0.25
Consensus pattern (33 bp):
AGAGTATAGAATTAGGAATAGGAGTTTAGCAGT
Left flanking sequence: Indices 714135 -- 714634
CTTCTAAAGAATACATAGGGACAAGTGATATTGAGTTCAGTCTCTCTCTTTCCGAATGCAATACC
TCTTCAATGACCTCAAAAATAGGGAATAGCGGTTCAGTAGTTCAGTCGAATAACTCATAAGAGAT
GGTAATGTAATAGAGGGGAGTGAAATCAGGTTCCGGAGTGAGCTCTCATTCAGCCAGAGTTGAGT
ATTTCTCTTTGTTTACAGTTCGAAAAGAATAACTAGGCAATCAATATAGGGTTCAGGGGCGAGAC
CAATAGAATTAGAATAGGTGGTTCAGGATCGTTAATCTTTCTTCTTCAATCAATTCATTTTGTAA
AGGTGATTGAGCTCAGCTGTGAGACGGAGTTTACGAGGGGTGAAAGAGCTCGACCAAAGGGCGAG
ACCGAAGGGCGAGACCAAAGGGAGAGGGGCAGGGGAAAGACTAACTACTACTGACTAATACTACT
TACCGAGTTCAAGATTATATGAATTAGGAGTTTAGCAGTAGACGC
Right flanking sequence: Indices 714732 -- 715231
TAGAGTAGAAGTTCAGTAAAGGACTGCAGTTTAGCAGTAGAGTAGAGGTAGAGTATAAGAATTAG
GAATTAGGAGTTTAGGACGGACAGAGGAGGGAGCGCAGACTCAGACAGAGTTTACAGTTCAAGAG
TTAATTCATTAGCAGCAGCTTTATCAATAGAATAGGTGTAGGTGCAGGAGCGAAGCAGCTTTACC
GACAAAGGAGGGGAAGGAACTTACGCTCAGCTTAGTTACATAAAAGGTTCAGTAAAAGAGCTCCT
TCCAGCAGTCTCATTACATTAACATTAAGCCTCAAATACCGGTAAAGAAAGTCAGGAGAAAGACT
GACTCTCAACAATACACTTTACTTTACCTATACAAAGAATATAACAAACTAGAAACAAACAGACA
GAGACCGTAAACTTAGTTAGTTAAACCCTTCCGTCTGCGAGTCCATTAATTAGCTACTTGACTTT
AGCAGTCAGTCCTTGAGTGAAAGCAAGCAAGAAAGGAGAAAAGAA
Found at i:714676 original size:26 final size:26
Alignment explanation
Indices: 714647--714699 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
714637 AGTATAAGAA
714647 TTAGGAATAGGAGGTTAGCAGTAGAG
1 TTAGGAATAGGAGGTTAGCAGTAGAG
*
714673 TTAGGAATAGGAGTTTAGCAGTAGAG
1 TTAGGAATAGGAGGTTAGCAGTAGAG
714699 T
1 T
714700 ATCAGAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.04, G:0.36, T:0.26
Consensus pattern (26 bp):
TTAGGAATAGGAGGTTAGCAGTAGAG
Left flanking sequence: Indices 714147 -- 714646
ACATAGGGACAAGTGATATTGAGTTCAGTCTCTCTCTTTCCGAATGCAATACCTCTTCAATGACC
TCAAAAATAGGGAATAGCGGTTCAGTAGTTCAGTCGAATAACTCATAAGAGATGGTAATGTAATA
GAGGGGAGTGAAATCAGGTTCCGGAGTGAGCTCTCATTCAGCCAGAGTTGAGTATTTCTCTTTGT
TTACAGTTCGAAAAGAATAACTAGGCAATCAATATAGGGTTCAGGGGCGAGACCAATAGAATTAG
AATAGGTGGTTCAGGATCGTTAATCTTTCTTCTTCAATCAATTCATTTTGTAAAGGTGATTGAGC
TCAGCTGTGAGACGGAGTTTACGAGGGGTGAAAGAGCTCGACCAAAGGGCGAGACCGAAGGGCGA
GACCAAAGGGAGAGGGGCAGGGGAAAGACTAACTACTACTGACTAATACTACTTACCGAGTTCAA
GATTATATGAATTAGGAGTTTAGCAGTAGACGCAGAGTATAAGAA
Right flanking sequence: Indices 714700 -- 715199
ATCAGAATTAGGAGTAGGAGTTTAGCAGTAGATAGAGTAGAAGTTCAGTAAAGGACTGCAGTTTA
GCAGTAGAGTAGAGGTAGAGTATAAGAATTAGGAATTAGGAGTTTAGGACGGACAGAGGAGGGAG
CGCAGACTCAGACAGAGTTTACAGTTCAAGAGTTAATTCATTAGCAGCAGCTTTATCAATAGAAT
AGGTGTAGGTGCAGGAGCGAAGCAGCTTTACCGACAAAGGAGGGGAAGGAACTTACGCTCAGCTT
AGTTACATAAAAGGTTCAGTAAAAGAGCTCCTTCCAGCAGTCTCATTACATTAACATTAAGCCTC
AAATACCGGTAAAGAAAGTCAGGAGAAAGACTGACTCTCAACAATACACTTTACTTTACCTATAC
AAAGAATATAACAAACTAGAAACAAACAGACAGAGACCGTAAACTTAGTTAGTTAAACCCTTCCG
TCTGCGAGTCCATTAATTAGCTACTTGACTTTAGCAGTCAGTCCT
Found at i:715274 original size:28 final size:28
Alignment explanation
Indices: 715242--715331 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 28
715232 AGAGCTGTGC
*
715242 AAGTATAGGTCAGCTAATAGAATAGAAG
1 AAGTATAGGTCAGCTAATAGAATAGAAT
** ** **
715270 AAGTATCTGAAAGCTAATAGAATACTAT
1 AAGTATAGGTCAGCTAATAGAATAGAAT
715298 AAGTATAGGTCAGCTAATAGAATAGAAT
1 AAGTATAGGTCAGCTAATAGAATAGAAT
715326 AAGTAT
1 AAGTAT
715332 TAGAAAGAAG
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.47, C:0.08, G:0.20, T:0.26
Consensus pattern (28 bp):
AAGTATAGGTCAGCTAATAGAATAGAAT
Left flanking sequence: Indices 714742 -- 715241
GTTCAGTAAAGGACTGCAGTTTAGCAGTAGAGTAGAGGTAGAGTATAAGAATTAGGAATTAGGAG
TTTAGGACGGACAGAGGAGGGAGCGCAGACTCAGACAGAGTTTACAGTTCAAGAGTTAATTCATT
AGCAGCAGCTTTATCAATAGAATAGGTGTAGGTGCAGGAGCGAAGCAGCTTTACCGACAAAGGAG
GGGAAGGAACTTACGCTCAGCTTAGTTACATAAAAGGTTCAGTAAAAGAGCTCCTTCCAGCAGTC
TCATTACATTAACATTAAGCCTCAAATACCGGTAAAGAAAGTCAGGAGAAAGACTGACTCTCAAC
AATACACTTTACTTTACCTATACAAAGAATATAACAAACTAGAAACAAACAGACAGAGACCGTAA
ACTTAGTTAGTTAAACCCTTCCGTCTGCGAGTCCATTAATTAGCTACTTGACTTTAGCAGTCAGT
CCTTGAGTGAAAGCAAGCAAGAAAGGAGAAAAGAAAGAGCTGTGC
Right flanking sequence: Indices 715332 -- 715831
TAGAAAGAAGGAAGAATGGGTAAGTAGGTCAGGTCAGGCAATGCAATTGCTTTACCGCCAGGTTC
CGGAGTTCATTCAATCAGGAATAGGTGAAGCAGCACAGCAGATCCTTATTTTCCGTCTCAGTCAT
AAGGAGGAGTTCAGTCTTACAGTTACCAGTCGTCTTCTTCTTTCGGTTCCCCTCTTACAGTTACA
GAGTTTAATGCAGCTTTCCTTCAGTCTTAGTTTACTGTAAAAGAATAGATTCACAACTGGCCATA
TGTCCTCCTCAGGATCAAGAACCAATGATACCCGGTTTACTAGGTTCAGGATTCAATTAACTGAC
TCAACAACAAAAGAATACATAGGTTAAGGAAAATGCATCAATAGAGTATAAGAATAAGGGTGACG
GTGGATCCTCTTTAAAACACTATAGAAATAGAGTAAAAGAGTAAGGGTTTGTTTAGCTTTCTTCT
TTACTAACTAAGGGAGGGTGACGCTTTCTTCTTTCAAACACTATA
Found at i:727148 original size:16 final size:16
Alignment explanation
Indices: 727124--727154 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
727114 TCTTAGTTTT
*
727124 TGAATGATTGAGACAA
1 TGAAAGATTGAGACAA
727140 TGAAAGATTGAGACA
1 TGAAAGATTGAGACA
727155 GTTATGAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.06, G:0.26, T:0.23
Consensus pattern (16 bp):
TGAAAGATTGAGACAA
Left flanking sequence: Indices 726624 -- 727123
AAATAGGATTCTAGTGGATGAATCTTAAAACGAGCCATGTACCCAATCACCTCCTTTCGTTTGTT
CGGTAAAACAAGCATGAATTTCCCGACTAATCCGGTATATTTTCCCCATTGCTAGGAGTCCCTTT
ATGTTTCCGCTTTCTTTCCGAATATGAGACTAGGCTAATAATAGAAAGTCTTATTCCGGCATTTC
TTCTTTACTGGAGTTTTAGCCCCTCTTCTCTTATCTTATTAGGCCAGAGAAAGTTTCGAGTTATG
AATCGGTAATAAAACACCTAATGGACGATGATTTGTAATCCGTTATTGCTCTCGGTTTTGTTGTG
ATGTTGAAACGCTTTGTTTTTCTTTATCCAGGCCAGGGGCAATGAGTTTTGATGCATTAGGGGGT
ATCTGTCTTTATAGACGCTTTCATTTTCGTGCTTATCCTACTAATTCTCGGTTTAGTTTATGCAT
GGCGAAAAGAAAGGAAGGAGCTTTCATTGGATTGGTCTTAGTTTT
Right flanking sequence: Indices 727155 -- 727654
GTTATGAATTACAGTTTCCCTCTACTTGCTTGATCGAAGAACCCAAACTTCAGTAACTACATCAA
ATGATCTTGCAAATTGGTCAAGACTGACGACTCCCCACCCCTCTTTATGGCCGCTTCTCTATGGT
ATCTCTTCTTGCTTCATTGAATTCGCTTCATTAATAGGTAGGTTCACGATTCGACTTTTTTCTCG
TTATGGACTGCAAGATCTAGTCCTAGCCGGGCCGACTTCATTTTCCCAGCAGGTGCGGTAACAAT
GGCTCCTTCTTTCTTTAGTCAGATTCTATGAGCAAATGCCTGAACCAATATATGTTCTTCCTATG
GGAGCATAATTAGAGGAGGGTTGTTCAGTACCGATTCTTATACTACTCTTCGTGGAGTCGATAAG
TTAATTCCTGGGTGTATTTGCCGGGGTGTCCACCGAAACCAGAGGCTGTTAGAGTATAGCTGCAA
TAACAAAACCTCGTCTCAGTCAGAAAATCTCTCGATCAATCTATC
Found at i:729800 original size:29 final size:29
Alignment explanation
Indices: 729758--729825 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
729748 AGGTTTTGGG
*
729758 GATAGAGAGAGGGACGGAGGCATGAGACC
1 GATAGAGAGAGGGACGAAGGCATGAGACC
729787 GATAGAGAGAGGGACGAAGGCATGAGACC
1 GATAGAGAGAGGGACGAAGGCATGAGACC
*
729816 GCTAGAGAGA
1 GATAGAGAGA
729826 TCGACTTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.37, C:0.13, G:0.43, T:0.07
Consensus pattern (29 bp):
GATAGAGAGAGGGACGAAGGCATGAGACC
Left flanking sequence: Indices 729258 -- 729757
TGAGCGATACTGGTCCTACACATTAGCCTTATTCTCAATAATTGGTTGGAACCCCGGTGACACGA
GGATAGGATATTTTGAGTCCTCTGCTCTACTAACTAAGCTATACCCTCCATTTCTGACAGACACA
TTATCTTTCTTTTCATAGATGCCCTTACATTCTTCTTCTTTTTGAAGATCCACGAAATGGCATTG
AAGGGTTTGCTGGGATAAGTCTTTTTATGTTTCAGTACAGTAGACAGTATTCAGTGAATCATTAC
AATTTCACAACGGGGAGTCCTTGCCCAAGGATGGGAGTTTGTCCGTCTATGATAGATGATAATAT
ACATCAGCAGTCTTGTGATAAGAAAGACAATTTCCCCTCAATCAAATAGGCTGGCTTGTTCAAGA
GTCGAATGAAGGAGAGAGAAAGAAAAGATCACGAATTGTTAATTGCTACTGAAAGAAAGGATAAA
TAATAAAGAAAGAGGCCAACGAACCCGACTTTTTAAGGTTTTGGG
Right flanking sequence: Indices 729826 -- 730325
TCGACTTGAACCAACCCTCACTTGAAAGTCGACTCGACAGATTTGCCTCTGACTAAGTCACTATC
CATTGCTGTTTTGTCGGTATTGACATAATGGGTGGGACTCTATCTTTATTCTATTCTCATCTGAT
TAATAAGCTCTTCGATCTATCAGACTATGATAGAGTCAGAGATATTCCAGTTGTCATTATAGTAT
AAGGATTTCAATACGTAATACTATGGCTGCTTTTACAGAGTGAGTTTGGATTGGAAGGAAAGATT
CTTTACTAACGCAACGTAGTCAACTCCATTTGTTAGAACAGCTTCTATTGAGTGGAGTGCACCTA
CCCCCTTTCTTTTTGTTTTCGGAAAAAGGATTTGGCTCAGGATTGCCCAGTTTGCATTCCAGGGG
TTCTCGGAAGTGGAAAGTTCTCCCTTAGTGTAGTAGTAGGTTTACATACCAAGGCTCAATCTAAT
TAAGTAAGTCCGGAGCGGCTACCGCCACCCTCTTTTAAAGATTAG
Found at i:731440 original size:13 final size:13
Alignment explanation
Indices: 731418--731453 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
731408 CTGCCCCTCT
731418 CCCTTTGGTCTCG
1 CCCTTTGGTCTCG
*
731431 CCCTTCGGTCTCG
1 CCCTTTGGTCTCG
731444 CCCTTTGGTC
1 CCCTTTGGTC
731454 GAGCTCTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.22, T:0.36
Consensus pattern (13 bp):
CCCTTTGGTCTCG
Left flanking sequence: Indices 730918 -- 731417
TGGTGAGATATCTATACTCCGCAGTGTGAAGTTCTTTCATTAAGGAAGTCAAGACTATCGAGAAA
ACCTTCCCCTTCTTTCCCTCCGTCACCTATTGATTGATTCTTTCTCCTTCCCCTTCCGATTCATT
CGACAGATTTCCTTCCCTCGGTAAATAGTAGCTCTTTGATTTCACTCTTTCTGTGGGTCTGTTTG
CTCCTTCTTCTATTGGTCGGTTGAACTATTCCATTGCCTGCTGAACCTCTTCTTCTTTCTTCTGC
TTGAAAGACTCCTTATTCATGAGACAGATGGAACTCGTAAACTATCTCTCTCCTGCCTGACCCTA
TCTTGAACTGATCTTGATCTTCTCCTTTCAACCACCACTGGAAACTAAGACTGAACGAAAGATAG
ATTAATGAGACTAAACCGACACCCTTTGACAGATTGAAGGAGGTAAATAGGCTGATCTCCCTCAC
CTCTACAACTCGGTTTCCTTTCCCAATTGCATTGCCTGCCCCTCT
Right flanking sequence: Indices 731454 -- 731953
GAGCTCTTTCACCTCTTCGCCCTCCGGGTCTCAGGGCTTCTAACCTCTCCCTTTACTTACTGTCT
CGCTCTTTCACCCCTCTCCAACTCGGGGGCGGGTTGAACTGGGTAAGCTGTATGAGAAGAAGAAG
AAAGATGAATTCGACTTAACTCCTTATACCTTTTTGACAGTGAAAGAAAGAAAGAGGGGAGATGA
AACATTAATGAGACTTCACAGTCAGGAAAGAGGTAAACTCCTGAACCTGTCGGTTTCCCAATTCC
ATTGCTTGAACTACTGAACCTCTATCTATTTCCTGAAAAAGAAAGGAAAGACGAAACTCAAGATG
AATGAAAGAGTCAACACTCTCGAAGAATCAATTCGACTTAACTGTAAGGAAAGACGAAAGATTCC
TTCTTGATCTGATCCGAAACTCTCTCTTCATTCAACTGTAAACACTCCTTATGAATTCTCCTTCA
CTCAATCACTTGTCCCTATTTATTCACTGTAAAGGATCTTCGTTT
Found at i:744902 original size:28 final size:29
Alignment explanation
Indices: 744843--744902 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
744833 CCTTGCATCG
* **
744843 CTCCTCTCCCTTCCGGTCTCGCTGTTTCA
1 CTCCTCTCCCTTCCGGTCTCGCGGTTGAA
*
744872 CTCCTCTCCCTT-TGGTCTCGCGGTTGAA
1 CTCCTCTCCCTTCCGGTCTCGCGGTTGAA
744900 CTC
1 CTC
744903 GTTCGCCTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 15 0.56
29 12 0.44
ACGTcount: A:0.05, C:0.42, G:0.17, T:0.37
Consensus pattern (29 bp):
CTCCTCTCCCTTCCGGTCTCGCGGTTGAA
Left flanking sequence: Indices 744343 -- 744842
CCGAAACCTAGACGAAAGGATGTATAGCATTTTACAGAACCCCAACGATGCTTAGAATCAAGCAA
ATCTAAAGAGAAAGAGAAAGAAAGAAAGAAAAGAGGCTTGCTTGTCTTCTCCTGGAAAATCAATG
ATAAAGTTATATCAGCTCTAAATCAAAGTCTTTACCATTCTTTTGTTTGTTGATGAGACGACACC
CAGCAGATTTGAACTGGGTAAATAGGGAGGGATTCGCAGGCCCACGCCTTACCTTACCGCTCGAC
CATGCCGCCAAAACAATACTAAATCTTGGATTGGCTCTATCTCTTCGATTGATAGTATCTTACAA
CACCCAATATCGAAAACTCAAAAGCGAAAACCGGAACCTCGGCTTGGCGCCTTTTCACTATTCTA
TTCTTTCACTGCTGGGTAAATAGGCTGATCAGCTCCTTCCCCTCCCCTTAAGGTAAAGCTGCTTC
GCTCCTGACCCTGAACCTATCTATCCTTTAGGTCTCCTTGCATCG
Right flanking sequence: Indices 744903 -- 745402
GTTCGCCTCGTAACCTCGGGCTCACCGCTTTCGCTCCTCTCCCTTTGGTCTCGCTGTTGAACGAG
TTCGCCTCGTAACCTCGGGCTCACCGCTTTCGCTCCTTCCCCTTTACAGTCTTTGAATCAATGAA
TTAGCAGCTTGACAGGGGAGTCAATCAAATCAAAGAGATAGTGAAACCGGAACCTTGCCATGAGA
GTCAATTCCTTGCAGCTCAATCACCTATCACAAAGAAGGGAGAGGCAATTCAGATTCAATCCTTT
CCCTCTCTCTCCTTTACCTGACGAGAATGAATGAGACTGAACCTAAACCTTAACCTTCACCGATA
TGACCTGACCTGATTCCCTGACCAGATGGAACTGTAAACAAAGACGAAAGGAAAGATGAATGAGA
GTGAACAGGAAGGAAAGAAGAAAGATGCATTCTCCTGAACTCCTTCACTTGTCCCTGATTTCACT
CAAACACAAGGTAAAGCGCTATTTGAAGAACCTTCCCCTGAACCT
Found at i:745012 original size:64 final size:64
Alignment explanation
Indices: 744867--745008 Score: 241
Period size: 64 Copynumber: 2.2 Consensus size: 64
744857 GGTCTCGCTG
* **
744867 TTTCACTCCTCTCCCTTTGGTCTCGCGGTTGAACTCGTTCGCCTCGTAACCTCGGGCTCACCGC
1 TTTCGCTCCTCTCCCTTTGGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGCTCACCGC
*
744931 TTTCGCTCCTCTCCCTTTGGTCTCGCTGTTGAACGAGTTCGCCTCGTAACCTCGGGCTCACCGC
1 TTTCGCTCCTCTCCCTTTGGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGCTCACCGC
744995 TTTCGCTCCT-TCCC
1 TTTCGCTCCTCTCCC
745009 CTTTACAGTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
63 4 0.05
64 70 0.95
ACGTcount: A:0.08, C:0.39, G:0.20, T:0.32
Consensus pattern (64 bp):
TTTCGCTCCTCTCCCTTTGGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGCTCACCGC
Left flanking sequence: Indices 744367 -- 744866
TAGCATTTTACAGAACCCCAACGATGCTTAGAATCAAGCAAATCTAAAGAGAAAGAGAAAGAAAG
AAAGAAAAGAGGCTTGCTTGTCTTCTCCTGGAAAATCAATGATAAAGTTATATCAGCTCTAAATC
AAAGTCTTTACCATTCTTTTGTTTGTTGATGAGACGACACCCAGCAGATTTGAACTGGGTAAATA
GGGAGGGATTCGCAGGCCCACGCCTTACCTTACCGCTCGACCATGCCGCCAAAACAATACTAAAT
CTTGGATTGGCTCTATCTCTTCGATTGATAGTATCTTACAACACCCAATATCGAAAACTCAAAAG
CGAAAACCGGAACCTCGGCTTGGCGCCTTTTCACTATTCTATTCTTTCACTGCTGGGTAAATAGG
CTGATCAGCTCCTTCCCCTCCCCTTAAGGTAAAGCTGCTTCGCTCCTGACCCTGAACCTATCTAT
CCTTTAGGTCTCCTTGCATCGCTCCTCTCCCTTCCGGTCTCGCTG
Right flanking sequence: Indices 745009 -- 745508
CTTTACAGTCTTTGAATCAATGAATTAGCAGCTTGACAGGGGAGTCAATCAAATCAAAGAGATAG
TGAAACCGGAACCTTGCCATGAGAGTCAATTCCTTGCAGCTCAATCACCTATCACAAAGAAGGGA
GAGGCAATTCAGATTCAATCCTTTCCCTCTCTCTCCTTTACCTGACGAGAATGAATGAGACTGAA
CCTAAACCTTAACCTTCACCGATATGACCTGACCTGATTCCCTGACCAGATGGAACTGTAAACAA
AGACGAAAGGAAAGATGAATGAGAGTGAACAGGAAGGAAAGAAGAAAGATGCATTCTCCTGAACT
CCTTCACTTGTCCCTGATTTCACTCAAACACAAGGTAAAGCGCTATTTGAAGAACCTTCCCCTGA
ACCTCCCCTTAAGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCTCTCGGTCGAGTTGTTTCACCC
CTCTCCAACTCGGTAAAGTGTCTTCGACTATTCTATTACTTGATT
Found at i:745648 original size:25 final size:24
Alignment explanation
Indices: 745627--745674 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
745617 CTCCTATTTC
*
745627 ACTCTTTATCCGTAAACCCTATCGA
1 ACTCTTTATCCGT-AACCCTATTGA
745652 ACTCTTTATCCGTAACCGCTATT
1 ACTCTTTATCCGTAACC-CTATT
745675 CTGCTCTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.35
Consensus pattern (24 bp):
ACTCTTTATCCGTAACCCTATTGA
Left flanking sequence: Indices 745127 -- 745626
ACAAAGAAGGGAGAGGCAATTCAGATTCAATCCTTTCCCTCTCTCTCCTTTACCTGACGAGAATG
AATGAGACTGAACCTAAACCTTAACCTTCACCGATATGACCTGACCTGATTCCCTGACCAGATGG
AACTGTAAACAAAGACGAAAGGAAAGATGAATGAGAGTGAACAGGAAGGAAAGAAGAAAGATGCA
TTCTCCTGAACTCCTTCACTTGTCCCTGATTTCACTCAAACACAAGGTAAAGCGCTATTTGAAGA
ACCTTCCCCTGAACCTCCCCTTAAGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCTCTCGGTCGA
GTTGTTTCACCCCTCTCCAACTCGGTAAAGTGTCTTCGACTATTCTATTACTTGATTGAACTAAC
TCTTGAACCTTGACGGCAGGATGAGAAGAATCAGGTAAAGCTCCTATTGAAGAACTCTTAAGGGA
ACTAGGTAAGCTGTATAATCCGAATTCAGGTAAAGCTCCTATTTC
Right flanking sequence: Indices 745675 -- 746174
CTGCTCTCTCCTAGTAACTGCTATTCCCCCCTAGTAACCGCTATTCCCCTCTCTCCTATTTATTC
TACTTCTACTTCATTCTTGAACTATTCTATTGAACCTGACCCGAGGTGTTACAGTCTTTGTTTGA
AAGAAAGAGTTAGCAGCTTTCCTCTCCCTTCCGGTCTCGCACTTTGTTCCTCTCCCGACGCCCTT
TTCCTATACTAGACAGTCGGTAAAAAAGAAGATGAATTATCTCCTCCCCTTTACTTACGGTCTCT
GTCTGTTCTCCTCGAGCCTTATTACTTTCTTTACTTAACTGATCCTCCTTAACTTAACTACTTTG
ACTATGTTCTTCGTTAGACTGATGGAACTCCTTGTTGTGAATTATCCTGATCCTATTTATTCTAG
ATCCTGAACTGTAAGACAAGACTCTCCTACTTCTTTTACTCAATCCCAAGGTAAGGTAGTAACTA
GGCAGGATTCTTTCTTTCTTTCTTTCTCCTTGCCCTTAAGCTGCT
Found at i:745691 original size:25 final size:23
Alignment explanation
Indices: 745663--745732 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 23
745653 CTCTTTATCC
745663 GTAACCGCTATTCTGCTCTCTCCTA
1 GTAACCGCTATTC--CTCTCTCCTA
*
745688 GTAACTGCTATTCC-C-C-CCTA
1 GTAACCGCTATTCCTCTCTCCTA
745708 GTAACCGCTATTCCCCTCTCTCCTA
1 GTAACCGCTATT--CCTCTCTCCTA
745733 TTTATTCTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 15 0.39
21 1 0.03
22 3 0.08
23 2 0.05
24 1 0.03
25 16 0.42
ACGTcount: A:0.17, C:0.40, G:0.10, T:0.33
Consensus pattern (23 bp):
GTAACCGCTATTCCTCTCTCCTA
Left flanking sequence: Indices 745163 -- 745662
CCCTCTCTCTCCTTTACCTGACGAGAATGAATGAGACTGAACCTAAACCTTAACCTTCACCGATA
TGACCTGACCTGATTCCCTGACCAGATGGAACTGTAAACAAAGACGAAAGGAAAGATGAATGAGA
GTGAACAGGAAGGAAAGAAGAAAGATGCATTCTCCTGAACTCCTTCACTTGTCCCTGATTTCACT
CAAACACAAGGTAAAGCGCTATTTGAAGAACCTTCCCCTGAACCTCCCCTTAAGGTTTCACAGCT
TCGCTCCTGCCCCTCTCCCTCTCGGTCGAGTTGTTTCACCCCTCTCCAACTCGGTAAAGTGTCTT
CGACTATTCTATTACTTGATTGAACTAACTCTTGAACCTTGACGGCAGGATGAGAAGAATCAGGT
AAAGCTCCTATTGAAGAACTCTTAAGGGAACTAGGTAAGCTGTATAATCCGAATTCAGGTAAAGC
TCCTATTTCACTCTTTATCCGTAAACCCTATCGAACTCTTTATCC
Right flanking sequence: Indices 745733 -- 746232
TTTATTCTACTTCTACTTCATTCTTGAACTATTCTATTGAACCTGACCCGAGGTGTTACAGTCTT
TGTTTGAAAGAAAGAGTTAGCAGCTTTCCTCTCCCTTCCGGTCTCGCACTTTGTTCCTCTCCCGA
CGCCCTTTTCCTATACTAGACAGTCGGTAAAAAAGAAGATGAATTATCTCCTCCCCTTTACTTAC
GGTCTCTGTCTGTTCTCCTCGAGCCTTATTACTTTCTTTACTTAACTGATCCTCCTTAACTTAAC
TACTTTGACTATGTTCTTCGTTAGACTGATGGAACTCCTTGTTGTGAATTATCCTGATCCTATTT
ATTCTAGATCCTGAACTGTAAGACAAGACTCTCCTACTTCTTTTACTCAATCCCAAGGTAAGGTA
GTAACTAGGCAGGATTCTTTCTTTCTTTCTTTCTCCTTGCCCTTAAGCTGCTATCGGTCTCGCTC
ATTGCTTGCTTCTCTGCTTCACCTCTTTATTCCCTTGCTTTATCT
Found at i:745709 original size:20 final size:20
Alignment explanation
Indices: 745684--745723 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
745674 TCTGCTCTCT
*
745684 CCTAGTAACTGCTATTCCCC
1 CCTAGTAACCGCTATTCCCC
745704 CCTAGTAACCGCTATTCCCC
1 CCTAGTAACCGCTATTCCCC
745724 TCTCTCCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.42, G:0.10, T:0.28
Consensus pattern (20 bp):
CCTAGTAACCGCTATTCCCC
Left flanking sequence: Indices 745184 -- 745683
CGAGAATGAATGAGACTGAACCTAAACCTTAACCTTCACCGATATGACCTGACCTGATTCCCTGA
CCAGATGGAACTGTAAACAAAGACGAAAGGAAAGATGAATGAGAGTGAACAGGAAGGAAAGAAGA
AAGATGCATTCTCCTGAACTCCTTCACTTGTCCCTGATTTCACTCAAACACAAGGTAAAGCGCTA
TTTGAAGAACCTTCCCCTGAACCTCCCCTTAAGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCTC
TCGGTCGAGTTGTTTCACCCCTCTCCAACTCGGTAAAGTGTCTTCGACTATTCTATTACTTGATT
GAACTAACTCTTGAACCTTGACGGCAGGATGAGAAGAATCAGGTAAAGCTCCTATTGAAGAACTC
TTAAGGGAACTAGGTAAGCTGTATAATCCGAATTCAGGTAAAGCTCCTATTTCACTCTTTATCCG
TAAACCCTATCGAACTCTTTATCCGTAACCGCTATTCTGCTCTCT
Right flanking sequence: Indices 745724 -- 746223
TCTCTCCTATTTATTCTACTTCTACTTCATTCTTGAACTATTCTATTGAACCTGACCCGAGGTGT
TACAGTCTTTGTTTGAAAGAAAGAGTTAGCAGCTTTCCTCTCCCTTCCGGTCTCGCACTTTGTTC
CTCTCCCGACGCCCTTTTCCTATACTAGACAGTCGGTAAAAAAGAAGATGAATTATCTCCTCCCC
TTTACTTACGGTCTCTGTCTGTTCTCCTCGAGCCTTATTACTTTCTTTACTTAACTGATCCTCCT
TAACTTAACTACTTTGACTATGTTCTTCGTTAGACTGATGGAACTCCTTGTTGTGAATTATCCTG
ATCCTATTTATTCTAGATCCTGAACTGTAAGACAAGACTCTCCTACTTCTTTTACTCAATCCCAA
GGTAAGGTAGTAACTAGGCAGGATTCTTTCTTTCTTTCTTTCTCCTTGCCCTTAAGCTGCTATCG
GTCTCGCTCATTGCTTGCTTCTCTGCTTCACCTCTTTATTCCCTT
Found at i:746474 original size:23 final size:23
Alignment explanation
Indices: 746443--746487 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
746433 AGCCTCAACT
*
746443 ACTTCTTCTCCTCCAAATGAAAG
1 ACTTATTCTCCTCCAAATGAAAG
746466 ACTTATTCTCCTCCAAATGAAA
1 ACTTATTCTCCTCCAAATGAAA
746488 CACACGGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.07, T:0.31
Consensus pattern (23 bp):
ACTTATTCTCCTCCAAATGAAAG
Left flanking sequence: Indices 745943 -- 746442
TCCTCGAGCCTTATTACTTTCTTTACTTAACTGATCCTCCTTAACTTAACTACTTTGACTATGTT
CTTCGTTAGACTGATGGAACTCCTTGTTGTGAATTATCCTGATCCTATTTATTCTAGATCCTGAA
CTGTAAGACAAGACTCTCCTACTTCTTTTACTCAATCCCAAGGTAAGGTAGTAACTAGGCAGGAT
TCTTTCTTTCTTTCTTTCTCCTTGCCCTTAAGCTGCTATCGGTCTCGCTCATTGCTTGCTTCTCT
GCTTCACCTCTTTATTCCCTTGCTTTATCTCTGTAGGTAAATGGGCTGCTTACTTCATTCTCCTT
CGTAACCCAACTCGCTACTTACTCCTGACCGGGACCTTATTCTCGTCGTCTTCTTTCTTTAGCCG
GATTGAAGAGTAAAGTGTAGCTCTTTTCTTGAGTCAATGAATTAGCAGCTTTCGCTCGGCTCGGT
GAATAAGAGTTTTTACAGTCTTTGAATAAAGGGAAAGCCTCAACT
Right flanking sequence: Indices 746488 -- 746987
CACACGGATTCTACTCTTCCCTCCGTAACCTACTGAACTACCTACTACTGAAACCGGGAAGTCAA
TCAAGACTGAAACCCTCTATTGCTTTATTTATTCGCGCTTCTTCTCTTCTTTGTTTAACTGTAGG
GAATCTTAGCTTAGCTCTTCTTCTCTTTCTGCTTATTCTCTGAACCTTTTCCTGATGATGTATAA
CTCTTGATCCGGGACCCTTGACTGTTGACTTACTCAATCCTTCACCCCGTAAACTATCAGTCTGT
CTGCTGAACTACTTACTCTCCCTATGGTTCTACCCCCTATTTATTGTTGAACTCGTTAAAGCTAG
AAGACTAAAGCAAGACAAGATGAAGCTCATTCTTATCCTGTTACAGTCTTTGAAAGAGGTAGTAA
GTAAATCAAGCATATTCAATTCGTTCCTTATGCATCCTTTACAGTCGAGTAAATCAAAGAATAAT
CCGGTAGTAAGTCAAGACGACTGAAGCAAGACAAGATTAATGATT
Found at i:759391 original size:31 final size:31
Alignment explanation
Indices: 759353--759588 Score: 241
Period size: 31 Copynumber: 7.6 Consensus size: 31
759343 GTTCAGAAAT
759353 TCTATCTTT-CCCGTATTTTTGGGTATCAAAG
1 TCTATCTTTACCC-TATTTTTGGGTATCAAAG
* * * *
759384 TCTATCTTTACCCTATTTTAGGGCA-GAAAA
1 TCTATCTTTACCCTATTTTTGGGTATCAAAG
** *
759414 TGGATGCTTTACCCTCTTTTTCGGG-ATCAAAG
1 TCTAT-CTTTACCCTATTTTT-GGGTATCAAAG
759446 TCTATCTTT-CCCGTATTTTTGGGTATCAAAG
1 TCTATCTTTACCC-TATTTTTGGGTATCAAAG
* * * *
759477 TCTATCTTTACCCTATTTTAGGGCA-GAAAA
1 TCTATCTTTACCCTATTTTTGGGTATCAAAG
** *
759507 TGGATGCTTTACCCTCTTTTTCGGG-ATCAAAG
1 TCTAT-CTTTACCCTATTTTT-GGGTATCAAAG
*
759539 TCTATCTTTCCCCTATTTTTGGGTATCAAAG
1 TCTATCTTTACCCTATTTTTGGGTATCAAAG
759570 TCTATCTTTACCCTATTTT
1 TCTATCTTTACCCTATTTT
759589 GAGGGATCAA
Statistics
Matches: 166, Mismatches: 28, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
30 21 0.13
31 121 0.73
32 24 0.14
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (31 bp):
TCTATCTTTACCCTATTTTTGGGTATCAAAG
Left flanking sequence: Indices 758853 -- 759352
TTCCCGATTTCATTGCCTTCCCCTGCATTGGACTGATTCAACTGTAACCTCCTGACTGGCCTATT
TATTACTTCTTGCTTGAACTCAGTCTTGAACTCGGTCTGCTTGCTCCTTCCCCTGATTTTACAAG
GTAAAAGAGAAAGGAAAGACTAACGATTCATTCTCCTGACCCGGAAGGAAAGAAAGAAGGGAAAC
AGAAGGTAGAGTCTATGAATGACGGAACCTGAACCGTAACCGATAGAGAAAGAAGGTAGATGACA
GATTAAAGAGAGTTTACAGTCTTTGAATAAATTCAGGGAGAAGAAAGACAAAGCCTCGACTCCTT
ATTCCGGAACCAGTAAAGACCATTAATTAATTTATTCTATCCTATATAGGGGTAAAAGTTCGTAA
TCGCTTTTTCACTAATAGCAGCAGCAAAAATCAAATATTTTCTATCCAGCATAGGGGTCAAAGTT
CGTAAGAGGTTTTCCCCTAAGGAAAGCAGCTGAAAGTTCAGAAAT
Right flanking sequence: Indices 759589 -- 760088
GAGGGATCAAATTGATGCTTTTAGGGCAGAGGTAATGTTGAAGTCAATCCTCTCGAAGAATCAAT
GAGAGTTAACTGTCAGTCAATCCTCAAGATTCCTTCTTTCTCTTTCTCTTCTCCTTCAAACACTC
TTTTCCTCTCCTGTAACCACTCCTTATTCATTCTCACCTATTCATTGTTGGTCTCAGAATTCCAT
TGCCTGATTCATTATTTTCTTTCCAACGGAATCCAACAGAAAGAGTCCGGGACTTCCTTGAGGAA
CCACATCTTTCCAACCCAGTTCATCGGATTCATTCGGCCCAGCTTCTTCTTCTTCTTTTCATATT
GGGTTTCGGACTCAGCCACTGACTTCTCTTCCATTTTCTCAAAAGGCAGGGTCTGACAGCGAGGA
CTAAATAAGACCCCAACCAACCAAAACCAAATTCGCGCAAGGTCCCCTCATTCAATTCATTGTTT
CTTTCATGATAAGACCGATCCTAATTCAATTGTGGCTGCTCAGCT
Found at i:759609 original size:93 final size:93
Alignment explanation
Indices: 759353--759593 Score: 464
Period size: 93 Copynumber: 2.6 Consensus size: 93
759343 GTTCAGAAAT
759353 TCTATCTTTCCCGTATTTTTGGGTATCAAAGTCTATCTTTACCCTATTTTAGGGCAGAAAATGGA
1 TCTATCTTTCCCGTATTTTTGGGTATCAAAGTCTATCTTTACCCTATTTTAGGGCAGAAAATGGA
759418 TGCTTTACCCTCTTTTTCGGGATCAAAG
66 TGCTTTACCCTCTTTTTCGGGATCAAAG
759446 TCTATCTTTCCCGTATTTTTGGGTATCAAAGTCTATCTTTACCCTATTTTAGGGCAGAAAATGGA
1 TCTATCTTTCCCGTATTTTTGGGTATCAAAGTCTATCTTTACCCTATTTTAGGGCAGAAAATGGA
759511 TGCTTTACCCTCTTTTTCGGGATCAAAG
66 TGCTTTACCCTCTTTTTCGGGATCAAAG
*
759539 TCTATCTTTCCCCTATTTTTGGGTATCAAAGTCTATCTTTACCCTATTTTGAGGG
1 TCTATCTTTCCCGTATTTTTGGGTATCAAAGTCTATCTTTACCCTATTTT-AGGG
759594 ATCAAATTGA
Statistics
Matches: 146, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
93 142 0.97
94 4 0.03
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.41
Consensus pattern (93 bp):
TCTATCTTTCCCGTATTTTTGGGTATCAAAGTCTATCTTTACCCTATTTTAGGGCAGAAAATGGA
TGCTTTACCCTCTTTTTCGGGATCAAAG
Left flanking sequence: Indices 758853 -- 759352
TTCCCGATTTCATTGCCTTCCCCTGCATTGGACTGATTCAACTGTAACCTCCTGACTGGCCTATT
TATTACTTCTTGCTTGAACTCAGTCTTGAACTCGGTCTGCTTGCTCCTTCCCCTGATTTTACAAG
GTAAAAGAGAAAGGAAAGACTAACGATTCATTCTCCTGACCCGGAAGGAAAGAAAGAAGGGAAAC
AGAAGGTAGAGTCTATGAATGACGGAACCTGAACCGTAACCGATAGAGAAAGAAGGTAGATGACA
GATTAAAGAGAGTTTACAGTCTTTGAATAAATTCAGGGAGAAGAAAGACAAAGCCTCGACTCCTT
ATTCCGGAACCAGTAAAGACCATTAATTAATTTATTCTATCCTATATAGGGGTAAAAGTTCGTAA
TCGCTTTTTCACTAATAGCAGCAGCAAAAATCAAATATTTTCTATCCAGCATAGGGGTCAAAGTT
CGTAAGAGGTTTTCCCCTAAGGAAAGCAGCTGAAAGTTCAGAAAT
Right flanking sequence: Indices 759594 -- 760093
ATCAAATTGATGCTTTTAGGGCAGAGGTAATGTTGAAGTCAATCCTCTCGAAGAATCAATGAGAG
TTAACTGTCAGTCAATCCTCAAGATTCCTTCTTTCTCTTTCTCTTCTCCTTCAAACACTCTTTTC
CTCTCCTGTAACCACTCCTTATTCATTCTCACCTATTCATTGTTGGTCTCAGAATTCCATTGCCT
GATTCATTATTTTCTTTCCAACGGAATCCAACAGAAAGAGTCCGGGACTTCCTTGAGGAACCACA
TCTTTCCAACCCAGTTCATCGGATTCATTCGGCCCAGCTTCTTCTTCTTCTTTTCATATTGGGTT
TCGGACTCAGCCACTGACTTCTCTTCCATTTTCTCAAAAGGCAGGGTCTGACAGCGAGGACTAAA
TAAGACCCCAACCAACCAAAACCAAATTCGCGCAAGGTCCCCTCATTCAATTCATTGTTTCTTTC
ATGATAAGACCGATCCTAATTCAATTGTGGCTGCTCAGCTCAAAA
Found at i:761034 original size:29 final size:29
Alignment explanation
Indices: 760992--761116 Score: 250
Period size: 29 Copynumber: 4.3 Consensus size: 29
760982 ATTCTCTGGT
760992 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
1 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
761021 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
1 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
761050 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
1 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
761079 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
1 AGAGGGGAGAAGCTGCTCGACTGTAAAGG
761108 AGAGGGGAG
1 AGAGGGGAG
761117 TCGAGGTTGA
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.31, C:0.13, G:0.43, T:0.13
Consensus pattern (29 bp):
AGAGGGGAGAAGCTGCTCGACTGTAAAGG
Left flanking sequence: Indices 760492 -- 760991
ACCAGCCACATGCATTAAACTATGCGTCTCACTAAGAAGACTTTCTGACCATCTCGTACTCAGAC
GTTTTTCTTCCCTTAAAGAGTCGACAGCGCGCCATAGATTGCGATTCTTCCTTCGTCTGATCTTC
AGGGTAAGAGTGAGTCTTTGACAGATTTCGACCCCAACCTTTGATTTGAACAGGATCTGCTACTG
CTGGTAGATAAAGGGCTTTCCCTTTTGCGGGCAGTGTGGGAGGCGACTTTCCAGTAGGGCGAGTG
TCTAAAGCCCGGGTTATCTCTCTGAATCAGCTTATTCACTGGACTGTTAAGCCATCGAGTCCTCT
AGCGTTGATCGACCCCTTTCAAGAAGATTCATCCAAGACACTAACCGGTAATTCTAAGGAGAAAC
ACATTCCATAAGGAAGATCAGAGGAAGGCATACATACATAGTTGGCTGGTTATTTGTCTTTACCA
TTCCTGCTGCTACTGAAGGTGCTCGGAATTCATAGATTCTCTGGT
Right flanking sequence: Indices 761117 -- 761616
TCGAGGTTGAATTCTTTGGTGGGCTGGCTTAAAGAAGACACCAATTGCAATTGCAGTAGGAGTAG
CTACTTGTTTCATGGCTTTCATTTGAGCTTCAGATAGAGAATATCTACATAAATGAGTATGACTG
GTTAAGGTGACCGACCTGCTTTCTTTGTGCGGCAACCGCAAGTTAAGGTACTCTGGATTTGTTAT
AGCACCACCATTTCACAATATACATTGGCCGGGAAAGCTAGTCTTGGGATTGCTCTTTTATCCTA
CTGAAGCGAACATTATGAAAGTTGAGGCTTGACTTGATGAATAAGAAGAAGAAAGATCACAACAA
AGAAGAAATAGGTGAAAGAAGGGAATGAGAAAGAAGAAGAAATGGAATAGGTGAAGGAGCAAAGA
GACCTACAGAAAGAAAGAAAAGGTTTGAGCTTGAGTCTTTGTTTACAGTGAAGGCAGAGGCAAAG
AGGGAAATCAGTCCAATGCAGGGGAAGGCTTTCTCTTTGATAAAG
Found at i:773861 original size:25 final size:25
Alignment explanation
Indices: 773833--773882 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
773823 GAAAGGCGGG
773833 CTTAGCAGGGTTCTCCAAACGTATA
1 CTTAGCAGGGTTCTCCAAACGTATA
** *
773858 CTTATTAGGTTTCTCCAAACGTATA
1 CTTAGCAGGGTTCTCCAAACGTATA
773883 AACAAAAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (25 bp):
CTTAGCAGGGTTCTCCAAACGTATA
Left flanking sequence: Indices 773333 -- 773832
CCCCTGACCTTATCAGTCATCAGGCAGGGTTTTGGTATCATATATCGAGATAATTATTATGAAAA
AGCTATTCCACTGGTGTGACTTAGATACCCTTTCTTTCTTTGTGGTATCAGTCATGCTATTTGAA
TAGCCTGAAATCATCATAGCCTCTCCACCGGTTCCGAAGACTCCTTCGGCATCAATGTGCTCCAA
TGAAAGAGATCAGACCCTTTCCTTCACCAGAACCGGAGCGAGCTCTTTTCGCACGCAATCTCGAA
GCCCAATTAGCTCACGGACTGTCTCCTCAACCCTGGCGAGTACGAGAGCTTGGTAAGAGAGAATG
TCGAATGAGAAAGACATTCGATTACGGCAACTAACTAGATAGCGAACTTTTTGGTAGAAACTGAA
TGATCCCTTGGCTCGGGCAAGAAAAGGAAAAGGTAAGAGTACTTACTCTTATTCCGACGATAGGA
AAGTTTGAGCTGAAAGATTGAATCACACCGGGTAAGAAAGGCGGG
Right flanking sequence: Indices 773883 -- 774382
AACAAAAAGAGGAAGCAACCGGTCCTGAAGAGGATACCGATACGCAGACATTCTCGCATGGAAGA
ACCTAGCTGAACCGGATCAAGGGTCCTAACCGAGTCCGACTGACCTTCTTTGGCTGGCCCCCGCC
CCTTGTAACGAGGTCAACCCGTACGTGCTCCTTTCGTTTAGCGAGATAGCTTACCAGCTCTTTCG
GCTCCAGCAGTATGAAAAGCGGAATCCTCATCCTGAGTCGAGTCCGCATTGCCATACGAATCGAC
ATCGGACAAACCAAGAACTCCTATTTTTTCTTTAACGAAAGCAGATATAACAGTTTCGAGAAAAC
AAACCAACCTCTTTTAAAGAAGGAGTCGCTCCGCCTTGATCACCGTGGACATACGCAGCTCCCGC
TTTACCTTCGCCTACCGGGAAAAGGAAAGTTCCCTCACGATAGGCCCTCCCAGCTCCCGAACGTC
TTTCTATCAATCGAGAGAGGTACAGAATAGTACAACAAACCAACA
Found at i:775329 original size:31 final size:31
Alignment explanation
Indices: 775291--775429 Score: 111
Period size: 31 Copynumber: 4.5 Consensus size: 31
775281 AGGAAAATAG
775291 CCCCAAAAATAGGGTAAAGCATCCATTTGAT
1 CCCCAAAAATAGGGTAAAGCATCCATTTGAT
*** * * * *
775322 CCCCAAAAATACGGG-GGGGGATAGCTTTTTAT
1 CCCCAAAAATA-GGGTAAAGCAT-CCATTTGAT
* * *
775354 CCCGAAAAATAGGGTAAAGCATCGATTTTAT
1 CCCCAAAAATAGGGTAAAGCATCCATTTGAT
* **
775385 CCCGAAAAATAGGGTAAAG-ATAGACTTTGAT
1 CCCCAAAAATAGGGTAAAGCATCCA-TTTGAT
*
775416 CCCTAAAAATAGGG
1 CCCCAAAAATAGGG
775430 AGAGGATAGG
Statistics
Matches: 86, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
30 4 0.05
31 60 0.70
32 22 0.26
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (31 bp):
CCCCAAAAATAGGGTAAAGCATCCATTTGAT
Left flanking sequence: Indices 774791 -- 775290
AAGAGCTTCCTGGTCCGTAGTAGACGAAACCTTGGACTTCTATCGGACTTATAGCATTGCCTGGT
GAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATCGAGCAGCCTTTCTTTCCCTGCCTGGTATGC
TTTCCCGCTTATCGCGCAACTAGCCAACTAGCCAAAGAGAGAGGGAGAGGGGTGAAACAGCGAGA
CCGAGTGAAAGAGTGAAAGAAGGAATCTTTCGGATTTACTGACAGTGAACTCGAATGAATCGATA
GTGTTTACAGGAGAGGAAAAGAAAAGAGTGTTTGAAGTCGAAGAGAAAGAATGTTGAGGATTGAC
TGACAGTTCACTCTCATTCATCTGAAGGATTGACTTCAACATTACCTTTACTAGATTTGATCCCT
AAAAATAAGGGAAGGGTAGACTTTTCTCCCTAAAAATAGACAGAGGATAGGATCATTCTAGTTTT
TTGAGTGTTTACAGGAGAGTGAAAGAGTGAAATCAAGGAAAATAG
Right flanking sequence: Indices 775430 -- 775929
AGAGGATAGGATCATTCTAGTTTTTTGAGTGTTTACAGTCGAGTTCCAGAGGGAAATCAGGGAAA
ATGGACTCTTTTATCCCTCAAAATAGGGGGGAGGATAGAATTTCTTTTCTTTCAGCTCCAGCTAT
TAGGGAAAAAGGTCTTACGAACTTTGACAGTCATATGGGATAGAATTTCTTTTCTTTCAGCTTCA
GCTGTTAGGGAAAAAGCTCTTTTAATGTTTTACCCCTATGTTGGATAGAATTTCTTCATTAATGG
TACTTACAGGATCATGAATAAGGAGTTGAGTCTCCCTTCTCTTTCCCTTCTTTCTTGAACTGTAA
AGTCGTCTTCTTCTTTCGTCTACCTTCTTTCAGTCTCTACTGACGCGGGTCCGGTTCAGGTGAAG
TAGCTAGCTCTTTTTCGGTTTCGTCTTTCAAAGCTACTAATTCATTCTAGAACTGTAAAGGAGAA
GTAGCGAAGGGAAGTCTCAAGAGTGAAAGCAAGAAGCTCGACGAG
Found at i:775999 original size:17 final size:17
Alignment explanation
Indices: 775977--776011 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
775967 AGGAGGGAAA
775977 TCAGGTTCGTTCAGTAG
1 TCAGGTTCGTTCAGTAG
775994 TCAGGTTCGTTCAGTAG
1 TCAGGTTCGTTCAGTAG
776011 T
1 T
776012 TCTGTCGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.29, T:0.37
Consensus pattern (17 bp):
TCAGGTTCGTTCAGTAG
Left flanking sequence: Indices 775477 -- 775976
AGAGGGAAATCAGGGAAAATGGACTCTTTTATCCCTCAAAATAGGGGGGAGGATAGAATTTCTTT
TCTTTCAGCTCCAGCTATTAGGGAAAAAGGTCTTACGAACTTTGACAGTCATATGGGATAGAATT
TCTTTTCTTTCAGCTTCAGCTGTTAGGGAAAAAGCTCTTTTAATGTTTTACCCCTATGTTGGATA
GAATTTCTTCATTAATGGTACTTACAGGATCATGAATAAGGAGTTGAGTCTCCCTTCTCTTTCCC
TTCTTTCTTGAACTGTAAAGTCGTCTTCTTCTTTCGTCTACCTTCTTTCAGTCTCTACTGACGCG
GGTCCGGTTCAGGTGAAGTAGCTAGCTCTTTTTCGGTTTCGTCTTTCAAAGCTACTAATTCATTC
TAGAACTGTAAAGGAGAAGTAGCGAAGGGAAGTCTCAAGAGTGAAAGCAAGAAGCTCGACGAGAA
GAGGTTCCAGAGTCAGTAGCGAGACCAATAGGGAGAGGAGGGAAA
Right flanking sequence: Indices 776012 -- 776511
TCTGTCGAATTCACTTCTTCTTCTTTTCTTACAGTTCCCGTTCCTGAGTAAGTAGCGAGACTCTA
AAAGGGAGGATTTCAGTCATAAGGGAAAAAGGGAATATCGGTTCAGGATTTCATGACTAAAGTAA
TCAGGGAAGGTGTTCAGGTTCAGTAGTTATTGAGTTTACCTCGTGAAAGAAGAAGTAGGATCAGG
AGTCTTTCTCTTGTCTCCCTTCCTGAACTGTAAAAGATAAGAGAGGGGCATATCGGGGCAGGAAA
TGGAATTGCTTTACCCAGAGGTTCAGTAGCTAATTAATGAATTGACTCTCATGGAAAAGGAAGGA
AAGAAAGAATCGGAGAAGGAATCTTGAGTATTGATCTTTTACAGTTCAATCCGGATTTCATATGC
TCGGACAGGGGAAGGAGGTGACAGTGATGAAAGAAGGGAAGTATCGGGTCGTATAAGGTTACGGA
GTAAATTGTTCATTCGCTGCTCTTTCTTCTCTTCGTTTACAGTGA
Found at i:778399 original size:28 final size:28
Alignment explanation
Indices: 778346--778399 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
778336 CTGGTGAAGT
* *
778346 AGTTCAGTCTCTTTCCTCTCCCTCATTG
1 AGTTCAGTCTCGTTCCTCTCACTCATTG
*
778374 AGTTCAGT-TCGTTCACTCTCATTCAT
1 AGTTCAGTCTCGTTC-CTCTCACTCAT
778400 AAGGAGTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.15, C:0.31, G:0.11, T:0.43
Consensus pattern (28 bp):
AGTTCAGTCTCGTTCCTCTCACTCATTG
Left flanking sequence: Indices 777846 -- 778345
AAGGAGTGAAACAGTGAGACCAAAGGGAGAGGAGTGAAGGAGTAAAGGGGAAGGAGCGAAGGGAA
GTCTTCTCATTCATCTTGTTCTTGTCTTGCTTTCGAAAGGATAGGTGAACCAGAATGAATAAGGA
ATTGGGTGTTTACTGTTACGGTTCCGGGGCAGGCTCATGAGCAAAGCAACTCGACTCGAAGCGGA
GTGAGCAAATCTTTCTTTCATTTGGTTGAGTCTTGAAAGCGGAATCCAATTCAATCAAAGAGAAG
AGAACGACAATGAATAGGTTACGGTGAAGGATCCATAATCGAGAGGTTATTCTTTCCTTACTGTT
CTTGATCATTAATAAGTAGGTGAAGTAGTTCAGGTCATATCGGTTCAGTCGAGAAAAGCTGCTAA
CTCATTCATTTATTCAAAGACAGTAAAGGATCTCTCTCTCATTCTTCTTCTTCCGGTTCAGGCGC
TTCTCTTCCTGTTCTTTCATTCTCTTCTTCTTCTTCTGGTGAAGT
Right flanking sequence: Indices 778400 -- 778899
AAGGAGTAGATAGAGTCAAAGGTTCTTCTTGACGCTTTTTGACCTAGTAAAACCCACCTGAGTTC
AAGAATCAATATCGTATTAGGGGGACGGACAGGGTATTAGTTATCTATAGATACTAATTATTAGT
TCTCTCTCTTAGGGGGGAGGGAAGGAGTTATCTTTCTTACAATTCTCTCTCTTTCTTTCCTTCCT
GGTCAGTCTCTCTCTGTCCTTCCAACCCAGCAGGCAAGCAGGTAAGCAAGTTCCTTCCAACCCAG
CAGGCAAGCAAGCAAGAAAGGAGAAAGAAGTAATAGTACTGCCTGTCCCGTAAACTCTCTCTCAT
AAGGAGTTGAGTCGAGACTGACTGTTCACTCTAATTCAGCTTTAGTTGAGTGAGTCTTCCTGCCA
CCTGCCTGTTCCGTTCCTTCCAACCCAGCAAGCAACAAGCAAGCAGTTCAAGCCAGCCCAGCCTA
GCCTAGCCTGTCCCGTAAACGATCTTCTTTCCTCTTTACTTGAGT
Found at i:782672 original size:34 final size:34
Alignment explanation
Indices: 782577--782679 Score: 134
Period size: 34 Copynumber: 3.0 Consensus size: 34
782567 GAGTTACGTC
** * *
782577 TTGACTGACAGTGAACGAGAAAGAATGTTGAGGA
1 TTGACTGACAGTGAACGATCATGAATCTTGAGGA
**
782611 TTGACTGACAGTGAACTCTCATGAATCTTGAGGA
1 TTGACTGACAGTGAACGATCATGAATCTTGAGGA
* *
782645 TTTACTGACAGTGAACGATCATTAATCTTGAGGA
1 TTGACTGACAGTGAACGATCATGAATCTTGAGGA
782679 T
1 T
782680 CAGAGAAAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 59 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (34 bp):
TTGACTGACAGTGAACGATCATGAATCTTGAGGA
Left flanking sequence: Indices 782077 -- 782576
GAGAATGAATCTTGAGTTGAGTCTTTGTTTACAGTTCCATCTGGTCAGGGAATCAGGTCAGGTTA
ATAAATAAGGTCAAAAAGGAATAGAGGAAAAATAGTCCTGGTTTGAGGTTACGGTTCTGGTTCAG
TCTCATTCAAATAGCTTTACCGAGGGAAAGAGTTCAAGCAAGAAAGGAGAAAGAGCAGTTCAAGA
ATCAATAGGTGAAAGAAAGTATGCTTTACCTTAATCAGGTTCAGGAGAAGAGAATGAATCTTTCC
TATTTCTCTTTTACAGTGAAGGGGGAGGAAATGAACCATAACTTCAGGGAGGGAATAGATAGAGG
GGAAGTAGTTCAGGAGCGAAGCTGTGAAACCGATAGGTGACGGAGTGAAACAGCTCGACCAAGAG
GGAGAGGAGCGATGCTGTGAAACCGATAGGTTCAGCAGTTTACCGAGTTCAATCTATCTGGTTCA
GGAGGGAAAGAAGGATCAGATCAAGAATGAATAAGGAGTTACGTC
Right flanking sequence: Indices 782680 -- 783179
CAGAGAAAGAGAAAGAAGGAATCTTTCGGATTTACTTACAGTTAAGTCGAATTGATTCTTCGATA
GGATTGACTTAGTAATTACCTTGACTCTCTTTTATCCCTAAAAATAGACGGAGGATAGGATCATT
CTAGTTTTTTGAGTGTTTACAGGAGAGTGAAAGAGCGAGACCGAGAGGGAGAGGAGTTCCATCCA
GTAATACAGGTTCAGGTTTTCCCTTTCTTCCTTCCTGACTGTTGAGTCTCATTCATCTCTCTCTT
TTCGTCAGGTTCGTTCCGGTGAAGGATTTCATTCATTGACTCGACTGGCAAGTGCTGGTAATATC
CGTGAAGGGGAATTAATCTAATCTTTCTTTCATTTTCAGAGTCTTTCCTTGAAACACTTGCTTGA
TGAATAAGGTTCCGGTTCAGTTCAGGAGTTCAGGGAAGGGACATATCGGTTCAGTCGCTTCTCTT
CTCTTTCTTGAATGAGATGATGATGATTCTTTAACCTATACATAC
Found at i:817725 original size:18 final size:15
Alignment explanation
Indices: 817678--817718 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
817668 GCTTTGCATA
817678 AGGTCTAGTTCCTTG
1 AGGTCTAGTTCCTTG
817693 AGGTCTAGTTCCTTG
1 AGGTCTAGTTCCTTG
817708 AGGTCTAGTTC
1 AGGTCTAGTTC
817719 TTCCTTGGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.15, C:0.20, G:0.27, T:0.39
Consensus pattern (15 bp):
AGGTCTAGTTCCTTG
Left flanking sequence: Indices 817178 -- 817677
CAGGTTCATGAGCGAGAACTTCCAGAATAAGCGCATGACGCAAGCCTCCCTCTGTCTATGTATCG
ACTATCGGGCCCATAACAACACTCTCAATCAAAAAAGAGCCCGTGCTGCCTCGCGAACTTTTTGA
TCAATTAGGTGCGGTAAGGTATTTCACCAAGTTGGACTGGCGACCGGAGTACTACCAAGTGTGGA
TCTTAGAAGGCTTAGAGGACAAGACGACGTGAGGCTGGAGCATTAGACTTTCTAGTAATGCTGGT
ATAACCAATGCTTCCTTTTGCACAAAGATGAATGAAGGATTTCGCCCCACCCACATGCATCGTGA
ATGGGAGAAGTTTCTCGTAGTCTGTGCTATTTGATACTAATTTCTACTAAATAGAGACCCCAGAT
GAGATTTTGGTGTATACTCTCATTGGAAGAAGACGCGGAGCACCTTTCTCACATGGAGAGAGCAG
TGTTCCAGATCATCAGGGTCCGCTCTATGTGAAGTGCTTTGCATA
Right flanking sequence: Indices 817719 -- 818218
TTCCTTGGGCATTGGATTGGCGACGGAGTTGGTTGGATCAAGAGAAGGTGCGCGCAAGCCGGGGT
GGACTGGGAGACGCCACGCAAGGTGCAGGAATTACGATTCTTCCTTAGATGAGTCCTACATCTGT
CTGTTTTTTGATTGAGAGGATATATTAAACTATAGGCGGTTCATCGAGGGCTTCTTTCTCGGGTG
ATTGATCGGAAGGGCTTAAGCTTTCCATTAGATTAGTAAAGGGGGAATGAGGGGCGAAGACGAGG
AAAAGGGTCAGGCTCAGTCGCTTTACCTTGTGAAAGAGTGAAATCAGTCTCATTCATCGTTTCGG
CTTGAAAAGCAGCTAATTCAGAATTTCATATCCCTTAACTGTAAAGGAGAATGAAGAGAGAGTTG
AGTCTTTGTTTACTGTGAAAGAATAACTCAACAATAACTGCACAAGGAAAGGAGTGAAGGAGTTT
ACATCAGGAGTCTTTCCTTCCGAACCTCATTACCTTATTCAAGAG
Found at i:819752 original size:34 final size:34
Alignment explanation
Indices: 819709--819781 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
819699 TATGAATTAG
819709 GAGTTTACCAGGACAGTATCAGAATTAGGAATAA
1 GAGTTTACCAGGACAGTATCAGAATTAGGAATAA
* *
819743 GAGTTTACCAGTACAGTATCAGAATTAGGAATAC
1 GAGTTTACCAGGACAGTATCAGAATTAGGAATAA
819777 GAGTT
1 GAGTT
819782 ACAGTTAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.26
Consensus pattern (34 bp):
GAGTTTACCAGGACAGTATCAGAATTAGGAATAA
Left flanking sequence: Indices 819209 -- 819708
CATCAGGTGAATGGGACGGAGCTTGCTTCTTTTCTTACTGTTCAATTCAGGGCATATCGGTTCAG
GAGCGACGAAGCCACGAGACCTCCTTCAATCAGTCAAAGGTGAAGCGGAGTTAAGTCTCATGAAT
CAGGAGTATTTCTCTTTACTTACAGTTCAATAAGCTCAGGTCATATATATCGGTGAAGGAGAATG
AATCTTGTACCGAATACCCTCTTTAGTCTAAGGAAGAAGTAGTTAAGGATTCACACTTCGGAAAG
AAGAAAGAGTTCGACAGACAGACAGGTTACAGAGCAAGCAAAGACTCAGACAAAGACAACTAACT
ACCTTTTACTTACTTCCTTCAATCAGGAGAGGAGCAGAAGGACATAGTCCAACCAATGTAATTTA
ATTACTTCAATCAGTTTCACGAGCCAGCTGACAGACAGAGGTAAAGGGGAAAGAATCAATACTAC
TCACTAATACTACTTCACGAGTGAAAGAAACATTATATGAATTAG
Right flanking sequence: Indices 819782 -- 820281
ACAGTTAAAGAAGGGAATAGGAGTTTACCAGTAGAGTAGAATAATTAGGAGTCTTTTACCAGTAG
ATAGAGTAGAAGTTCAGTAAAGGACTGCAGTTTAGCAGTAGAGTATAAGAATTAATTAGGAGAGG
AGTAGTAGGAGTTTAGCAGTAGAGTATAAGTTCAGTAAAGGACTCCTGTTTAGCAGTAGAGTAGA
GTATAAGAATTAAGAGTAGGAGTCAGAGTAGGAGTAGGAAGCAGTAGAGTATAAGAATTAGCAGG
AGGAGTAGGAGTTTAGCGAGTATAAGTTCAGTAAAGGACAGCAGTTTAACAGTAGAGTAGAGGTA
GAGTAGAATAATTAGGAATTAGGAGTTTAGGACAGAGGAGGGAGCCCAGACTCAGACAGAGTTTA
CAGTTCAAGAGTTAATTCATTAGCAGCAGCTTTCTTTATCAATAGAATAGGTTACGGGCGAGGAG
CTTACGCTCAGCTTAGTTACATAACATACAAACAAGGTGAAGTAA
Found at i:820687 original size:28 final size:28
Alignment explanation
Indices: 820546--820680 Score: 182
Period size: 28 Copynumber: 4.8 Consensus size: 28
820536 AGTATAGGTC
** *
820546 AGCTAATAGAATACTATAAGTAT-AGGTA
1 AGCTAATAGAATAGAATAAGTATCA-GAA
* *
820574 AGCTAATAGAATAGACTCAGTATCAGAA
1 AGCTAATAGAATAGAATAAGTATCAGAA
* *
820602 AGCTCAGAGAATAGAATAAGTATCAGAA
1 AGCTAATAGAATAGAATAAGTATCAGAA
*
820630 AGCTAATAGAATAGAGTAAGTATCAGAA
1 AGCTAATAGAATAGAATAAGTATCAGAA
820658 AGCTAATAGAATAGAATAAGTAT
1 AGCTAATAGAATAGAATAAGTAT
820681 TACAAAGAAG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 92 0.99
29 1 0.01
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.23
Consensus pattern (28 bp):
AGCTAATAGAATAGAATAAGTATCAGAA
Left flanking sequence: Indices 820046 -- 820545
GTAGGAGTTTAGCGAGTATAAGTTCAGTAAAGGACAGCAGTTTAACAGTAGAGTAGAGGTAGAGT
AGAATAATTAGGAATTAGGAGTTTAGGACAGAGGAGGGAGCCCAGACTCAGACAGAGTTTACAGT
TCAAGAGTTAATTCATTAGCAGCAGCTTTCTTTATCAATAGAATAGGTTACGGGCGAGGAGCTTA
CGCTCAGCTTAGTTACATAACATACAAACAAGGTGAAGTAAATAAAAGAGTTCCTTACAGCAGGC
AGTCTCATTATATTAACATTTAGCCTCAAATACCGGTAAAGAAAGTCAGGAGAAAGACTAACTCT
CAACAATACACTTTACAAAGAATATAACAAACTAGAAATAAACAGACAGACAGAGACCGTAAACT
TAGTTAGTTCAACCCTTCAGTCTGTCAGTCCATTAATTAGCTACTTTAGCAGTCAGGCAAAGAGT
GAAAGCAAGAAAGGAGAAAGAGAAAGATCCGTTACAGTATAGGTC
Right flanking sequence: Indices 820681 -- 821180
TACAAAGAAGGAAGAATGGGGAAGTAGTAAAGAAGGAGTGAATTCAATCAGGTGTTCCGGCCTTG
TTGGAGAGGTTAAGGAGCAAAGAGACTGACTGATAGTTTACGAGGTGAGGGAAAGGAAGGAGTCT
TTCCTTTCAGTTTCAGGATCAAGAACAGAGAAAGAAGGTTCAGGTTCTTCAAATAGCCCTTTATC
CAGGGAAATGACAGGCAGAGGTTCATGAGTTTACTGTTCAATCCGGTAATACTGTATAAGATCAA
GGTTCGTTCCGGGTCAGGTAATATCCATCGGTTCAGGAAGTAGCTCAGCGAATATCTTCTTCTTT
CATTCTCTTCTTCTTCTTTAATAGAAGATTTCATTCATTTACTAGATGGGAAAGTCAAGGTTATA
TCGTATAAGGAGCTCAGCTACCTTGTTTACTGCTCTTCAAGTGATTGAGTTCCAATTTCTTCTTG
TTTCGTCTTTCCTTTTAGTTACTCGACTGTAAAAGAGAAGAAAGT
Found at i:822109 original size:16 final size:17
Alignment explanation
Indices: 822079--822115 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
822069 GCTTGGATGG
822079 AAAGAAAGAGTGAAAGA
1 AAAGAAAGAGTGAAAGA
*
822096 AAAGAAATAG-GAAAGA
1 AAAGAAAGAGTGAAAGA
822112 AAAG
1 AAAG
822116 GATTGAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.68, C:0.00, G:0.27, T:0.05
Consensus pattern (17 bp):
AAAGAAAGAGTGAAAGA
Left flanking sequence: Indices 821579 -- 822078
AGAAGTAAGTAACCTATTTACCTCGTTCAAGAAGCTCGAGACAAATACATGATGACTGACTCTCT
TACTTATTCTTTGTATAGGGAAGTTTACCGAGTTCAATCAATGAGCTACTTCATATGCTTTTGCT
TTACCTTGTCTTTGAAGGAATAAATAGTAGTAGGGACAGACAAGTGAGTGAGCTTGACCCAGTTC
AATCTGGGAGTTCAGTCTCTCCCATTCATCTTCAGTCTTTGGTTACAGTTCGTCAAGTGATTGAG
TTCAGGATAATGCATGAATAAGAAATAGGAGTAAGTAGCGAGAGTAGAAAGATTAGTTAAAGAAA
AGAATCCATAGATAGGTTCAGAGAGTCAATTCATTGAATACCCTTTACCGAGAGTTACATCAGGG
GATAAAACAAAGTCAAGCTAGCAAGCACAGCAATGAGACAGACAGACCAGACCAATAGGAAGGAG
AAGGAAAGGACATTCTCAGCCAGTCCCCTTACCTTGCTTGGATGG
Right flanking sequence: Indices 822116 -- 822615
GATTGAATATACGAGTTCAGGCAATGCGTGAAACCGACAGGTCAAGCAGTTTACAGAGTGAAATC
AGGTTCAGTAGTTAAGATGATATCATATCGGGTCAGGGGCAGGCAGGGGTTCCCTTTCGTCTTGA
CTTACGACAATGAACAGACCTACAAGAAATAGGAGAATTAGTCTTTCTTACAGGACAGGCAGGAG
AGTGAAAGAAAGGAGGAAAGAACCAAAGACCTATTACCGATTACCGAGAGAGAGAAAGAGTGAAA
TCAGGCAGAGGTGAACAAGAACTTCCTCAGTCAGAATAACTCACACTAACAAAACAAGGGGTTAG
TCTAATTCATCCTTCTTGCTTGCTTTCGTCTTTACAGGAGAGTTCAAGGATAAAGAAGATCAGTT
CCAAATAGAATAGGTTACAGAGTTTAGGAGGAGGCTCATGAGCTTGACCTTTGCCAGCAGCTTTA
CCTAGTTCAAGAGAGAGTGAAATCAGTCTATCTAATTCATCCTTG
Found at i:824392 original size:30 final size:30
Alignment explanation
Indices: 824356--824427 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
824346 AGGTGAGTGA
824356 AGGAGCGAAAGCAACTCGACCAAGAGGGAG
1 AGGAGCGAAAGCAACTCGACCAAGAGGGAG
824386 AGGAGCGAAAGCAACTCGACCAAGAGGGAG
1 AGGAGCGAAAGCAACTCGACCAAGAGGGAG
824416 AGGAGCGAAAGC
1 AGGAGCGAAAGC
824428 TGTGAGACAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.40, C:0.19, G:0.38, T:0.03
Consensus pattern (30 bp):
AGGAGCGAAAGCAACTCGACCAAGAGGGAG
Left flanking sequence: Indices 823856 -- 824355
GATAGTCAAAGAAAGGGTGTCGGTTCAGTCTTTGGTTACAGTGAAAGAAGAATGAAAGAAGAAAT
AGGTGAAGGAGAAAGAATAACTCACAATCACAATAACAGATGGTAATACATACCATACCGTCAAA
GAAAAGGAGAAAGAAGAAATACGGGGCAGGAAGAAGACGAGTTGGAGAGGCTCCGGAGCTCAGCT
GCTTTACCTCGTTCCATCAAACAAAGACCCATTCTATTTACTCTACCTCTTACCTAGTTCAAGAA
GTAATAATAGTCCCGCCAGGCAATGGAGAATTGAAGCTGCTTTACTGAGTGAAAGGAAAGAAGAA
ATAGTCAAAGAAAGGGGAAGTAGTGAAAGAAGGAGAGAATATGCGAGTGAAAGAACTGACTTAAA
CTTAGTCCTTGCTTTACCGAGTCAAAGAATAGTTAATAGTTCCACCCCAGTTCAATCTGGTTCAG
GAAAGAACAGAGAACCAATGAGACCGGATAGGTCAAGGTGAGTGA
Right flanking sequence: Indices 824428 -- 824927
TGTGAGACAAAATAAAGCGAAGGCAATGGAATTGTGAGACCGAGTTTACGAGGCGAACGAGCGAA
GGCAACTCGACCAAGAGGGAGAGGTGACGGAATTGTGAGACCGAGTTGTAGAGGCGAATAAGCGA
AGCAGCTTGACCGACAGGGAAAGGAGTTCAATCCAATCTGGTGCAGGAGTTTACTGTTCCAGAAT
CAATAGAATAGGTGAAAGAAGGGAGAGAATGCATCGATAGTCTTGCTCGGCGAGCTACTTACTCC
CTCTTCTCGTAACCCACCTATTATTCAGTCAGTCAAAGAAAGAGAACGACAAAGAAGGTCAGGTA
ATTGAGTAGAGTCAAAGAAAGGAGAAGGTTTGCGGTTGAGTCTTTTCAGTTGAAGGAGAAAGAGC
AGCAGTTCTCGAATCAATAGGTTCCCCGCCCGGAGTGAAGGGACAGGTGCAGGAGTGAAAGGAAT
AGAGACTCAGGCTCAGACAGGAGAAAGAAGAAATAGGTTACAGGT
Found at i:826501 original size:71 final size:71
Alignment explanation
Indices: 826421--826643 Score: 342
Period size: 71 Copynumber: 3.1 Consensus size: 71
826411 ATACGGGATA
826421 GATAGAATTTCTTAGCTTTCCTATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGTT
1 GATAGAATTTCTTAGCTTTCCTATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGTT
826486 ATATTG
66 ATATTG
826492 GATAGAATTTCTTAGCTTTCCTATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGTT
1 GATAGAATTTCTTAGCTTTCCTATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGTT
826557 ATATTG
66 ATATTG
* * * * ***
826563 GATAGAATTTCTTAGCTTT-TTGCTGCAGCTATT-AGTGAAAAACCTCTTACGAACTTTGACAGT
1 GATAGAATTTCTTAGCTTTCCT-ATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGT
*
826626 TATATGGG
65 TATAT-TG
826634 GATAGAATTT
1 GATAGAATTT
826644 GAGAATTATT
Statistics
Matches: 142, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
70 32 0.23
71 110 0.77
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.37
Consensus pattern (71 bp):
GATAGAATTTCTTAGCTTTCCTATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGTT
ATATTG
Left flanking sequence: Indices 825921 -- 826420
CTGACAGTGAACGATCATTAATCTTGAGGATCAGAGAAAGAGAAAGAAGGAATCTTGAGTCTTTC
CTGACAGTTCACTCTCATTGATTCTTCGATAGTCTTTACTGTTGAATTCATCTTTCGGATTGACT
TCCAGTGAACGTTCACTCTCATTCATAAGCTTGAGTCTTTGTTTACAGTTAAAGAATAGTTCAAG
AAGGAAAAGGAGAAGAGAATGAATCTTTCGGCTTTCCCTTGTTCAAGAGTTAAATGACCAACAAA
ATAGGGAGAGGTGATTGAGCTGATCTTTCTTTCCTTGATCTTTTTGACCTTGTGAAAGAAGGTGA
AGGAGAAGGAATCGAGAGTTTCGGAGAAGAGAAAGAGAAAGAAGGAATCTTGAGGAGAAGATCAA
GAAGGAATCTTGAGGATTGACTTCCAGTTCACTCTCATGTTGAGTTTCGTTTCGTCTTTCCTTAA
TAGTGAATTACCTTTACTAGATTTGATACCCTAAAATACGGGATA
Right flanking sequence: Indices 826644 -- 827143
GAGAATTATTGGTCCGTCAGAGTGAAATCAGTAGGATCAGATCAAGAAGCCGAGGTTGTTCTGGT
TGTTACGGCAGAGAAAGAATAGTTCGTTCAACCCAGAGTAAGTAAAGTAAGCAAACTCACTGACA
GAAGCTTTCCCTAGTTCTTTATTAATAAATAAGGAGTTAAGGTAAGGAGAATGAATTAAGGAGTT
AGTAAGTAGAATGAATCTATCTTTACGTTCAGGATCATTAATCTCTTTCTTGCTTTCTCTTCAGT
TACTTAGAATAAGAAACTCAGGGTTTCGGTTCAGGTTTTCTCTTTCGTCTTTCCTTTCAACACTT
GATTCATAAGGATCTTGATCAGTTCCTGAATAAATAGGGGAAGGAGCAAACTGATAGTTGTAGAG
GTGACGGATTGAATGAATAAGAACCATGAGACTCGAACGAAGAGGATTGAATTCATTGACTCGAC
AGCAGTTCCGGATTGAATGAATAAGGGAAATAGGTAAAGGAGCTA
Found at i:826849 original size:25 final size:27
Alignment explanation
Indices: 826803--826854 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
826793 TATTAATAAA
826803 TAAGGAGTTAAGGTAAGGAGAATGAAT
1 TAAGGAGTTAAGGTAAGGAGAATGAAT
*
826830 TAAGGAGTT-A-GTAAGTAGAATGAAT
1 TAAGGAGTTAAGGTAAGGAGAATGAAT
826855 CTATCTTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 14 0.58
26 1 0.04
27 9 0.38
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (27 bp):
TAAGGAGTTAAGGTAAGGAGAATGAAT
Left flanking sequence: Indices 826303 -- 826802
AAGATCAAGAAGGAATCTTGAGGATTGACTTCCAGTTCACTCTCATGTTGAGTTTCGTTTCGTCT
TTCCTTAATAGTGAATTACCTTTACTAGATTTGATACCCTAAAATACGGGATAGATAGAATTTCT
TAGCTTTCCTATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGTTATATTGGATAGA
ATTTCTTAGCTTTCCTATGCTGCTATTAAGGGAAAAGGGTCTTACGAACTTTGACAGTTATATTG
GATAGAATTTCTTAGCTTTTTGCTGCAGCTATTAGTGAAAAACCTCTTACGAACTTTGACAGTTA
TATGGGGATAGAATTTGAGAATTATTGGTCCGTCAGAGTGAAATCAGTAGGATCAGATCAAGAAG
CCGAGGTTGTTCTGGTTGTTACGGCAGAGAAAGAATAGTTCGTTCAACCCAGAGTAAGTAAAGTA
AGCAAACTCACTGACAGAAGCTTTCCCTAGTTCTTTATTAATAAA
Right flanking sequence: Indices 826855 -- 827354
CTATCTTTACGTTCAGGATCATTAATCTCTTTCTTGCTTTCTCTTCAGTTACTTAGAATAAGAAA
CTCAGGGTTTCGGTTCAGGTTTTCTCTTTCGTCTTTCCTTTCAACACTTGATTCATAAGGATCTT
GATCAGTTCCTGAATAAATAGGGGAAGGAGCAAACTGATAGTTGTAGAGGTGACGGATTGAATGA
ATAAGAACCATGAGACTCGAACGAAGAGGATTGAATTCATTGACTCGACAGCAGTTCCGGATTGA
ATGAATAAGGGAAATAGGTAAAGGAGCTAAGCGACCTTGTTTACTGTGTTTGAAAGGAGAAGATC
AATCAGCCGGCCGAGGGGAAGAAGTAATAAATATAATAACATAGGCCAGCCAGGAGGTTACAGTG
AAAGAAAGAAGAAGAAGAAGAAGAATCAGATTCGAGACCGTATAGGTGAAGGTTAAGGACAGAGG
AGCGGATCATCCAGCCTATTTACTTACCTTGTCTTTGAATAAAGA
Found at i:831731 original size:30 final size:30
Alignment explanation
Indices: 831632--831735 Score: 86
Period size: 30 Copynumber: 3.3 Consensus size: 30
831622 GGTTCTCGTG
* *
831632 GCTTCGCTCCTCT-CCTTTCCAGTCTTCGCA
1 GCTTCGCTCCTCTCCCTCT-CGGTCTTCGCA
* * *
831662 GCTTCGCTCGTTCGCCTCGTAAACTCGGTC-TCACA
1 GCTTCGCTC-CTCTCC-C-T---CTCGGTCTTCGCA
831697 GCTTCGCTCCTCTCCCTCTCGGTCTTCGCA
1 GCTTCGCTCCTCTCCCTCTCGGTCTTCGCA
831727 GCTTCGCTC
1 GCTTCGCTC
831736 ATTCGACCTC
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
29 7 0.12
30 22 0.38
31 2 0.03
32 2 0.03
33 2 0.03
34 5 0.09
35 13 0.22
36 4 0.07
37 1 0.02
ACGTcount: A:0.08, C:0.42, G:0.17, T:0.33
Consensus pattern (30 bp):
GCTTCGCTCCTCTCCCTCTCGGTCTTCGCA
Left flanking sequence: Indices 831132 -- 831631
CTCACAACTCCATTGCCTTTTCCCGGAAGGTTTCGTAGCTGAGCTTATTCGCCTCTACACCTCGG
GCTCACAATTCCATTGCCTTCAAAAGCGGGTTGGTTACCGTTACTTCCTCTCTGTCTTAGCCTTT
CAAACACTGACTCTCCCTCCTGTAAGAAAGATGAATGATCATGAACCTCTCCAACTATCAGTCTG
CTTCTCTCCTACACCTGAACAGATATTACCTTCCCTGATTTCACGAGGTAAATAGGTTCAGTAGC
TAATTCATTTACTCGACTGTAAACAAGGGTTGAACTACAGATCTTTCTCTTTGCTTTCTGCTTTC
AAGACTCAACCGAAAACCTTTTCCTGAACCTGAACCGTCCCTATGTTTTTAGGCCATTGAACTAG
GGTAGGGAAAGCCGCTTCTCTCCTTCTCTCCTTCTTGAACTGTAAAGAAGTGACCTCACTCCTCT
CCCTATCGGTCGAGCTGTTTCACTCCTCTCGCTATGGTTCTCGTG
Right flanking sequence: Indices 831736 -- 832235
ATTCGACCTCTTGGTCTCACAGCGGAGCTCCTTTTCTTTTCCGATATTCCCTGAGCTACTGGAAC
CTTCTTTCACTCTTCTCCCTCTTGGTCTCACAATTCCTGAGCCTTCGCCCTACGGGTCTCACAGC
TTTCGCTCCCTCACCGATAGATATTACCTTCCCTTATTGAACTCGGGTTGAACTCCTGAACCCCT
ATTCCCTTCGCTACTTCATGAAATCCGAAAGCTCCTACTTCTTTCACTCATGAAATCCGAAAGCT
CTATTCCATTGCTTGCCTACACCTTATACTCTATTTCTTGATTGAAAAAAGACTAAAGATTCATG
AAAGTTCAGACTCAACGAAAGATTCTCTCCTCTCTCCTTTACTGTGTTTGAATAAATAGGAAAAG
GAGCTGCATAAGAGGAACCTATAGTGTTGAAAGATTGAACCTCAAACCGGAACCTCTTTAGATAG
AGAAAGAAAGATCAGCTCAATCACCTTGACAGTTGAGTCAATTCC
Found at i:834882 original size:17 final size:17
Alignment explanation
Indices: 834860--834910 Score: 102
Period size: 17 Copynumber: 3.0 Consensus size: 17
834850 TTTAATTACA
834860 GGAAAGCAAAGGTAAGC
1 GGAAAGCAAAGGTAAGC
834877 GGAAAGCAAAGGTAAGC
1 GGAAAGCAAAGGTAAGC
834894 GGAAAGCAAAGGTAAGC
1 GGAAAGCAAAGGTAAGC
834911 TCATGAACCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.47, C:0.12, G:0.35, T:0.06
Consensus pattern (17 bp):
GGAAAGCAAAGGTAAGC
Left flanking sequence: Indices 834360 -- 834859
CCTCAAGCTCCTACTTCTTTCCCGGAACCTTATACCCGGCGGACTCTATATTATTACTATTACCT
GATTGAACAAAGAAAGATGAATGAGTCGAGTTTACAGTCTTTGAATAAAAGGAAAGAAAGAAAGG
AGACTCCTTATGAATTATCCTGATTGAACTCAGTCTCCTTAACCCGGCTTACTCTACGACCTTCC
CTGATTGAACAAGGAAAGAGGAAAGCAAGACAAGATTCAATCACCTGTCCGTCCTTTACTGTGTT
AGAATAATATAGGGAGAGGAAAGACGAAACTACTTATTCATTCAATCCTCTAAAGCAAGACAAGT
AACCGAAGAGAAAGCAAGACAACAAGATGAATTAATTACAGGAAAGAAGGTCAAGCTCAAGCTGC
TCATTAACCTCTAGCAAGACAACAACATTTACATTCATTACATACAGGAAGGCCCAGCTAACCCA
ACGTGACGAGAAAGCAAGACAAACAACAACATTAGTTTAATTACA
Right flanking sequence: Indices 834911 -- 835410
TCATGAACCTGACGAGCAAGCAACCAAGACAAGAACAACAACATGAATTACGGGAAAGAAAGGTA
AACAAACTCATGAACCTAGAAAGCAAGACAAACAACAACATATGAATTACAGGCAGGCAGCGGTG
GGTAGGTAAAGCCCAACGCCTAGTCATGAGCAAGACAAACAACAACATTTACATTAAAGGCAGGC
AGCGGTAAAGCTACTCCACTCCCCTGACGAAGACAACAACAACAAGATATTCATTACAGGCAGGA
AGGGGTGGGTAAAGCCCAACGTGACGAGAAAGACAAACAACAACATTTACATTAAAGGAAGGTAA
AGCAAGCGACTCCCATCTCATGACGTCTAACAGTCTAACAACAAATAGAAATACAATAAAACACT
ATTTCTTTATATTCCCGGACCTTATACTCTATTTCTTGATTGAAAAAAGACTAAATATTGATTCA
TTCAAGTTCACTGTCAGACTCAACCTCAAGCTCCTACTGAACTCA
Done.