123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_014050
Parameters: 2 7 7 80 10 50 500
Length:  982833

Tables:   1   2   3   

This is table  2  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494260--494342	38	2.2	38	95	0	148	15	34	16	32	1.91
494260--494356	38	2.6	38	90	3	133	13	37	15	34	1.86
510021--510064	22	2.0	22	86	0	61	38	18	27	15	1.91
510632--510889	71	3.6	72	81	11	307	32	20	12	34	1.90
510973--511037	31	2.1	31	91	5	105	30	15	15	38	1.88
514646--514744	34	3.0	34	80	10	116	45	11	29	14	1.79
514763--514829	31	2.2	31	81	5	73	5	38	1	53	1.34
514776--514831	11	4.9	11	79	14	60	1	39	0	58	1.08
516870--516938	29	2.5	28	83	4	77	4	47	18	28	1.68
517438--517482	23	2.0	23	81	0	54	0	55	8	35	1.31
517564--517631	28	2.4	28	100	0	136	2	50	14	32	1.58
519417--519468	26	2.0	25	96	3	95	0	32	3	63	1.12
519417--519457	13	3.1	14	79	13	59	0	34	4	60	1.18
519417--519462	13	3.2	16	66	33	50	0	34	4	60	1.16
519422--519464	13	3.3	13	81	12	61	0	32	4	62	1.15
519402--519478	26	2.6	31	72	19	92	6	25	6	61	1.45
520949--521027	39	2.0	39	95	0	140	27	22	27	21	1.99
533630--533681	26	2.0	26	96	0	95	15	26	21	36	1.93
533701--533739	19	2.0	21	90	10	64	20	23	2	53	1.57
535342--535493	59	2.4	62	90	8	229	36	21	19	22	1.95
535498--535545	24	2.0	24	100	0	96	37	20	12	29	1.90
535522--535619	51	1.9	52	91	6	164	38	18	17	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537025--537255	75	2.9	76	79	10	259	19	13	19	48	1.81
537053--537112	28	2.1	28	93	0	102	21	16	18	43	1.88
537119--537196	34	2.5	32	84	13	101	15	16	15	52	1.75
542559--542610	25	2.0	27	88	7	81	25	30	0	44	1.54
544891--544927	18	2.1	18	100	0	74	24	21	5	48	1.71
545294--545340	13	3.6	13	83	11	60	0	31	8	59	1.27
545291--545340	26	2.0	25	88	4	73	0	32	8	60	1.26
545737--545885	54	2.8	52	79	11	169	28	18	22	30	1.97
546407--546542	46	2.9	46	80	15	147	32	19	16	30	1.95
546539--546568	11	2.6	12	94	5	53	56	16	20	6	1.62
546553--546596	16	2.8	16	82	3	63	54	15	20	9	1.68
546793--546831	15	2.6	15	95	0	69	15	43	0	41	1.46
546791--546839	20	2.3	21	83	13	57	16	40	2	40	1.60
549396--549425	15	2.0	15	100	0	60	33	20	26	20	1.97
551142--551247	36	3.0	36	87	1	124	19	31	11	37	1.87
553515--553576	29	2.1	29	100	0	124	11	38	16	33	1.84
553777--553920	69	2.1	69	97	0	270	30	18	16	34	1.93
561712--561808	33	3.2	33	69	19	109	30	13	43	12	1.81
561712--561833	59	2.1	59	93	0	208	32	15	40	10	1.82
566090--566126	17	2.2	17	90	0	56	32	32	13	21	1.92
570360--570393	17	2.0	17	94	0	59	35	26	2	35	1.72
570949--571041	47	2.0	47	97	0	177	33	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577009--577051	20	2.2	20	100	0	86	20	27	20	30	1.98
581589--581660	26	2.8	26	95	0	126	5	31	5	56	1.45
582849--583054	70	2.9	67	85	5	189	33	16	22	27	1.95
583047--583275	94	2.4	93	87	4	318	29	21	14	34	1.93
587261--587286	3	8.7	3	100	0	52	69	0	30	0	0.89
597113--597314	96	2.1	96	100	0	404	8	39	19	32	1.82
609585--609646	31	2.0	31	87	0	88	22	16	14	46	1.83
615505--615543	18	2.2	18	95	0	69	30	5	28	35	1.79
622481--622539	30	2.0	30	86	3	84	47	13	18	20	1.82
622852--623015	31	5.3	31	75	8	165	14	33	26	25	1.94
627906--627934	15	2.0	15	93	6	51	34	31	13	20	1.92
633536--633560	12	2.1	12	100	0	50	28	16	32	24	1.96
638355--638416	28	2.2	29	91	2	99	11	40	12	35	1.80
638415--638486	23	3.1	23	82	6	74	18	29	13	38	1.89
638594--638713	24	5.0	25	77	9	106	25	27	15	31	1.96
638881--638941	26	2.3	26	97	0	113	16	21	13	49	1.79
638877--638951	26	2.6	29	78	20	86	16	21	14	48	1.81
639003--639095	48	2.0	46	93	4	159	37	24	16	21	1.93
639198--639231	9	3.8	9	96	0	59	55	23	20	0	1.43
639483--639586	56	1.9	54	88	7	156	43	16	21	19	1.88
639486--639651	56	3.0	53	80	11	147	42	21	17	19	1.90
639725--639795	6	11.8	6	81	15	85	33	33	1	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639763--639801	18	2.2	18	100	0	78	46	33	0	20	1.51
640584--640609	13	2.0	13	100	0	52	0	46	7	46	1.31
641266--641318	19	2.8	19	76	0	61	24	15	18	41	1.89
641284--641400	46	2.4	50	77	7	134	22	12	17	47	1.82
646622--646713	29	3.2	29	64	22	75	10	38	17	33	1.85
647788--647835	4	12.0	4	81	0	60	0	25	25	50	1.50
647785--647834	16	3.1	16	97	0	91	0	26	26	48	1.52
652646--652671	12	2.2	12	100	0	52	46	15	23	15	1.83
654595--654669	30	2.5	30	84	4	89	6	33	24	36	1.81
655322--655516	69	2.8	68	84	3	248	21	20	13	44	1.85
659931--660227	65	4.9	58	80	9	193	31	16	47	4	1.67
659931--660136	87	2.3	92	81	7	217	31	15	49	3	1.63
659986--660062	16	5.2	16	70	17	76	29	12	57	0	1.36
659978--660191	65	3.4	65	89	6	293	31	14	49	4	1.65
659958--660227	29	8.8	29	77	11	263	30	16	48	4	1.65
660101--660275	94	1.9	93	83	7	228	32	16	42	8	1.77
663890--663929	19	2.1	19	100	0	80	47	27	15	10	1.77
667597--667640	22	2.0	22	100	0	88	45	4	18	31	1.69
674682--674716	4	8.8	4	87	0	52	68	2	25	2	1.17
674681--674711	16	1.9	16	100	0	62	64	3	25	6	1.33
675479--675542	31	2.1	31	93	0	110	48	4	32	14	1.64
686762--686829	25	2.7	25	90	0	118	45	7	33	13	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696178--696243	32	2.1	32	100	0	132	34	15	28	21	1.93
697020--697074	25	2.2	25	100	0	110	41	9	38	10	1.72
714511--714546	13	2.8	13	91	0	63	36	22	41	0	1.54
714635--714731	34	3.1	33	74	22	109	38	4	32	24	1.75
714647--714699	26	2.0	26	96	0	97	33	3	35	26	1.75
715242--715331	28	3.2	28	79	0	117	46	7	20	25	1.77
727124--727154	16	1.9	16	93	0	53	45	6	25	22	1.76
729758--729825	29	2.3	29	94	0	118	36	13	42	7	1.72
731418--731453	13	2.8	13	91	0	63	0	41	22	36	1.54
744843--744902	28	2.1	29	84	3	77	5	41	16	36	1.70
744867--745008	64	2.2	64	93	1	241	8	39	19	32	1.82
745627--745674	25	1.9	24	87	8	69	25	31	8	35	1.85
745663--745732	25	3.0	23	76	20	74	17	40	10	32	1.82
745684--745723	20	2.0	20	95	0	71	20	42	10	27	1.83
746443--746487	23	2.0	23	95	0	81	33	28	6	31	1.83
759353--759588	31	7.6	31	76	10	241	21	21	15	41	1.89
759353--759593	93	2.6	93	98	0	464	21	20	16	41	1.91
760992--761116	29	4.3	29	100	0	250	31	12	43	12	1.81
773833--773882	25	2.0	25	88	0	73	28	22	16	34	1.95
775291--775429	31	4.5	31	76	7	111	37	17	21	23	1.94
775977--776011	17	2.1	17	100	0	70	17	17	28	37	1.92
778346--778399	28	1.9	28	81	7	65	14	31	11	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782577--782679	34	3.0	34	85	0	134	33	13	25	28	1.94
817678--817718	15	2.7	15	100	0	82	14	19	26	39	1.90
819709--819781	34	2.1	34	94	0	128	38	12	23	26	1.90
820546--820680	28	4.8	28	86	1	182	48	8	19	22	1.76
822079--822115	16	2.2	17	90	4	58	67	0	27	5	1.12
824356--824427	30	2.4	30	100	0	144	40	19	37	2	1.66
826421--826643	71	3.1	71	92	2	342	28	13	20	36	1.91
826803--826854	25	2.0	27	88	7	81	44	0	30	25	1.54
831632--831735	30	3.3	30	70	19	86	7	42	17	32	1.77
834860--834910	17	3.0	17	100	0	102	47	11	35	5	1.65

Tables:   1   2   3