Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_014050
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 982833
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
File 1 of 3
Found at i:4099 original size:28 final size:28
Alignment explanation
Indices: 4046--4101 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
4036 CCATTGCCTC
** **
4046 CTCCCTTTGGTCTCGCTGTTTCACTCCT
1 CTCCCTTTGGTCGAGCTGTTGAACTCCT
4074 CTCCCTTTGGTCGAGCTGTTGAACTCCT
1 CTCCCTTTGGTCGAGCTGTTGAACTCCT
4102 TTTATTCTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.07, C:0.36, G:0.18, T:0.39
Consensus pattern (28 bp):
CTCCCTTTGGTCGAGCTGTTGAACTCCT
Left flanking sequence: Indices 3546 -- 4045
CGCTCCCCGCTCGAGAATGAATGTTGTAAACTCTTCGATGACATGCTCCTTTGAGTGCACAATTA
TTCCTTAGCTGTGCCTGTTTGGTACCGAGCTCTTTGTTGAGGGCCTTTCTTTATCCATTCACGCT
AAAAGGTAGTGAGTGGAGTCAGGCACAAAGCCTCAGCTGCCGAAATCAGCCTTCTTCGATCTCCT
GTTGAAGTGGCACCTGCAACATCAGTTTTTCAAACCTGGGTTCATTCCACTTTCCACTGGAGTAA
GGCAAAAAGAAAGATCTCGAATACGACGGTTTTTCAGGCGTATAGAGAATGACACGATCATCTAG
CCTTGGTCCTCTCATCATCTGATTCCCGAAAGAACGTAAGAACAGTTTGGGACTGGGCACGACCC
TTCTTCTTTTTGACCGGACAACTGGATGCGCGAATCTTGCTCTACCCCTCCTCCCTTTGGTCTCG
CGGTTGAACCTCTTCGCCCTCCGGGTCTCACAATTCCATTGCCTC
Right flanking sequence: Indices 4102 -- 4601
TTTATTCTGTCTCCTTACTTAACTACTGAACCGTAACCTGCCTTCGCTACTGAACCTGTCTCTGA
TCTTTCTCCTTAATGAGAGTTGACTCCTGAACCTATTTCTTCTTGATCCTTCCCCGTAACCGATA
TTACCTGACCTCCCCTTCCCTATTTATTCACTCGGTAAAGCAGCTAACTCCTGTCTCTCATGCAG
CTCCGTCACCCATTTCTTCTTGAACCTACTTATTAATGAGAAAGAAGAGTAAGTCAAGACTCAAC
CAACTACTTCTTCTCCTCTACTCCTTATGAATGAGACTGTAAGTAAAGACTATTTATTTATGCGG
TCTCCTTAACTACTGAACCGGAACAAAAACAGGACAGGAAAGAAGAAAGGAGATAGTGAACCCGG
AACCGGAACCCTTATCAATCTCATTCAGCTTTCCCGGTATTCCCTGAACCTTATACTGACTTTAT
TACCTGACCCTTATTCAAAGAATGAATGAAATACTCTGCCTGCCT
Found at i:5308 original size:21 final size:21
Alignment explanation
Indices: 5269--5308 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
5259 GGAGACTGAA
***
5269 GATGAATGAGACTTTACAGTG
1 GATGAATGAGACGGAACAGTG
5290 GATGAATGAGACGGAACAG
1 GATGAATGAGACGGAACAG
5309 GAAGAGAAGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.10, G:0.33, T:0.20
Consensus pattern (21 bp):
GATGAATGAGACGGAACAGTG
Left flanking sequence: Indices 4769 -- 5268
ATCCCTTTCCTTTACTCACTGTAAAAGCAAAATACTCCTTCCTTACCTTACTTATTCATTCTCCT
GAACAAACAAACAACTACTTACTTCCCCTTCACCTCTTCTTCTTTATGGTTGAAGAATTTCATTG
CCTGAACCTCTTTCACTGGGGTTTCACTATCTCTTTGATTGAAGCAATTCACCATTCATTCCATT
CTCCGGACCAGGAAGGCAAGACGAAAGATTCCTTAATTAGATTCTCCTTTACTGTCTTTGAAGGG
AAGTCAAGTCAAGACTCAATGAATTAGCTGCGGTCGGTAACTCAAGAAGCATTCTCCTTCACTCC
TACTACACCTATATATAGCCTTTCCAGTTCTCAAGAATAAATAGTCAAAGGAAGAAGACTCAGCA
GACAAGAAGATTCATTCTCCTGAACCTGAAAGCAAGAATGAGACTGATGGAACTCGGTAAAGCTA
TTTGAATTCTCCTGACTGAACCTTTACAGAAGAAGGGAGACTGAA
Right flanking sequence: Indices 5309 -- 5808
GAAGAGAAGCTCAATCACCTGCCGGTAAAGCTGCTTCGCTCCTTCGGCTCTAAACTGCTGGGTTC
TTTCTCCTTGCACCTATTTATTCAAACACTGTGTAACCGAGGTAAACTCCCTCACTACTGAACTT
CAGGAACCAGATTGAACTGGGTAAAGCAGCTGGATGATCATCAGGGAGTAGGTTGGCAAAAGGAG
ACTCACCAAGAATTCTCGACTTAACTCAATCACCTCGGCTTGGCCCCTTTTTTACAGAAACAGAA
TGAAGGGAAAGAAGGGAGACTAAAGATGAATGAGACGGAACTACTGAACCTGAAAGTGTTGAAAG
GAAAGACTCAACTCAAGACTCACCAAGAATTCTCCTTTACAGTTGTGAAAGAATGAATTAGGAGC
TTTGAAAGACTCAACTCAAGAGTTTACGAACTGAACTCCGGAACATTCAGTCAAGACGAAACGAA
AGACTGAACCTCAAACCTTTTCCTTCACCGGAACCTGAGCTACTG
Found at i:13118 original size:17 final size:16
Alignment explanation
Indices: 13085--13126 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
13075 CCTCTTCCTC
*
13085 CTATTTTCTTTCTTGT
1 CTATCTTCTTTCTTGT
13101 CTATCTTCTTTGCTTGT
1 CTATCTTCTTT-CTTGT
13118 CTATCTTCT
1 CTATCTTCT
13127 ACCCTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.07, C:0.24, G:0.07, T:0.62
Consensus pattern (16 bp):
CTATCTTCTTTCTTGT
Left flanking sequence: Indices 12585 -- 13084
GCATTTTCCTCTTACTATCAATTTCCATTTTAGTCGGTATTGACATGTAGAATGGGACTCTATCT
TGATTCTATTCGCATCTGATTAATCAGTTCTTCAAAAGATCTATCAGACTATGATAGAGTAAGAT
ATTCATTCCAGTTGTCATTCATCAATATAGGATGAATTCCTTTACTAACGCAACGTAGTCAACTC
CATTTGTTAGAACAGCTTCCATTGAGTCTCTGCACCGTAGCCCTTTTTCTTTTTGTTTTCGGAAA
AAGGATTTGGCTTGGCTCAGGATTGCCCTTTTTTCATTCCAGGGGTTCTCTTCATTGGAAAGTTC
TCACTTAGTAGGTTTCCATACCAAGGCTCAATCTAATTAAGTCCGTAGCGTCTACCGATTTAGCC
CCACTCTTTTAAGTCAGATTAGTATCTCATTATATTCTGTCCTTCCCCTTTTTCTTTCATTTGTA
TGTATTATGCTGGAACCCCTGAAGTCATTATCATACCTCTTCCTC
Right flanking sequence: Indices 13127 -- 13626
ACCCTTGTTTGGTCCGATCCAAAATGATTCTATCCTATCATTTCTCTATCTGCAATTCAATATAG
ATATATAGACATATCCATTTACCCCTCTTTCTATTATTAGTGAAATTCATAATACTTAAACGTAA
CCGGTCTGTCTCCTCCTTTTGTCGTCTTAGCTTCCAGCTTTCCGAATGAAAAGAAACGACTTCTT
CCCCTTTTTCAAAGGGCACCGATCACCATGTCGTAGGAACTTCCTATTATGAATGAAAATGGACA
AGAAAGGAACTCTGCCTTTTGTGTATCATATACGGATCCTATTGTATCTGTATAAAGTCATCTAA
TTAGTCTTTGTTTTGTCGTACAATACTTTCTTTACTGGATTTAGCTTCCGTTATCATTCTGATAT
TTATTCGTTTTCTTATTTAGGTTTATGAAATGGAAAGAAAGGAGTCTTTATGTCGCGTTACAGAG
GGCCTCGTTTCAAAAGAAGAATACGCCGTCTGTCTGTCTGGGGGC
Found at i:13133 original size:17 final size:17
Alignment explanation
Indices: 13096--13134 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
13086 TATTTTCTTT
***
13096 CTTGTCTATCTTCTTTG
1 CTTGTCTATCTTCTACC
13113 CTTGTCTATCTTCTACC
1 CTTGTCTATCTTCTACC
13130 CTTGT
1 CTTGT
13135 TTGGTCCGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.08, C:0.28, G:0.10, T:0.54
Consensus pattern (17 bp):
CTTGTCTATCTTCTACC
Left flanking sequence: Indices 12596 -- 13095
TTACTATCAATTTCCATTTTAGTCGGTATTGACATGTAGAATGGGACTCTATCTTGATTCTATTC
GCATCTGATTAATCAGTTCTTCAAAAGATCTATCAGACTATGATAGAGTAAGATATTCATTCCAG
TTGTCATTCATCAATATAGGATGAATTCCTTTACTAACGCAACGTAGTCAACTCCATTTGTTAGA
ACAGCTTCCATTGAGTCTCTGCACCGTAGCCCTTTTTCTTTTTGTTTTCGGAAAAAGGATTTGGC
TTGGCTCAGGATTGCCCTTTTTTCATTCCAGGGGTTCTCTTCATTGGAAAGTTCTCACTTAGTAG
GTTTCCATACCAAGGCTCAATCTAATTAAGTCCGTAGCGTCTACCGATTTAGCCCCACTCTTTTA
AGTCAGATTAGTATCTCATTATATTCTGTCCTTCCCCTTTTTCTTTCATTTGTATGTATTATGCT
GGAACCCCTGAAGTCATTATCATACCTCTTCCTCCTATTTTCTTT
Right flanking sequence: Indices 13135 -- 13634
TTGGTCCGATCCAAAATGATTCTATCCTATCATTTCTCTATCTGCAATTCAATATAGATATATAG
ACATATCCATTTACCCCTCTTTCTATTATTAGTGAAATTCATAATACTTAAACGTAACCGGTCTG
TCTCCTCCTTTTGTCGTCTTAGCTTCCAGCTTTCCGAATGAAAAGAAACGACTTCTTCCCCTTTT
TCAAAGGGCACCGATCACCATGTCGTAGGAACTTCCTATTATGAATGAAAATGGACAAGAAAGGA
ACTCTGCCTTTTGTGTATCATATACGGATCCTATTGTATCTGTATAAAGTCATCTAATTAGTCTT
TGTTTTGTCGTACAATACTTTCTTTACTGGATTTAGCTTCCGTTATCATTCTGATATTTATTCGT
TTTCTTATTTAGGTTTATGAAATGGAAAGAAAGGAGTCTTTATGTCGCGTTACAGAGGGCCTCGT
TTCAAAAGAAGAATACGCCGTCTGTCTGTCTGGGGGCCGGGACTA
Found at i:24166 original size:16 final size:16
Alignment explanation
Indices: 24145--24178 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
24135 CCGGAGGATC
24145 AAGGAAACTCTCTTAT
1 AAGGAAACTCTCTTAT
24161 AAGGAAACTCTCTTAT
1 AAGGAAACTCTCTTAT
24177 AA
1 AA
24179 AGTAGGCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (16 bp):
AAGGAAACTCTCTTAT
Left flanking sequence: Indices 23645 -- 24144
GCGCAGTATTTACTCGAACAAGAATGTAGTGAAGCAAGGCTGCTCCAAGCTTGTTGGAAATGGTG
CCTCTACATCCTTCCTTTTGGTATGATAAGTTGATTGGGAATTGGTAAGACTTCTATTGCTAAAA
GGTGCAACCCCGATGTTCCCTTGCATCTGAGGGGTGAGAAAGTGGTTGATTCCTACAATGATGGA
GAATGGGATTGGTCACGACTGAAGATCCTATTTTGTCATAAATTCCTGGTTTTGGAGGAAAAGGT
ATACGGGACCACTGTACTTTTCTATGTTGGTGGCCTACCTAATTCTCATGTGGGATCCAATGAGC
TGAGCATTAGGCTAAAGATTTTGGCATGGAACGACCAAGTTATCCATTCTTCAGCCAATGTACAA
GACGAAACGACACCATCCTTTGTATACGTGCACAACCAAATGAGACGGCGAAAGAAAGGTATGTT
CTGGAATGAATGAATCATTTAACTAAAAGACACGGCCGGAGGATC
Right flanking sequence: Indices 24179 -- 24678
AGTAGGCGAACAGTACGAAGGAGATGAGAAAGAAAATGTAGCTAGGCGACGAAGAGAAGAGGACG
AAGGAAGGAGGTGAACCGATAGACGAACCAGACGATAGGAGAAGAGGCTGACTGACGGGTGGTAG
GCTTATAAGTATAGGTAATGACGAAACATTCCTTATCCCTCAGCTCCCGTAAGGGAGGATAGCAA
TCCAGGATTGAATTCTGATCGTCAACCTCATTCCATCTCAAAAAAGAAGGGTTCGTAGGGGACGT
AAGGCGATGAGGCGCTTCGCGTTTCAGTCTCGGTTTCAATCAAGTAGTTCGTTCATGGTTCGTGA
GCTGATGAGATAGCCTTTTGCCGACTGAGCCGACTCGCTCATCCTTATTTCTTCTCTCTGTGCTT
CCTTCCCCCGCTAATTGGCCCTTGTTCAAGAGTTACCAGGGATGGATGATCTTATAGGCGAACAA
GCGTGGCCGATAGGCGAAGAAGAGGAAGGGGTTCAGCCTAGCTTA
Found at i:26183 original size:34 final size:34
Alignment explanation
Indices: 26137--26258 Score: 217
Period size: 34 Copynumber: 3.6 Consensus size: 34
26127 CTCGACCGAG
26137 AGGGAGAGGGGCAGGAGCGAAGCTGTGAAACCTTA
1 AGGG-GAGGGGCAGGAGCGAAGCTGTGAAACCTTA
26172 AGGGGAGGGGCAGGAGCGAAGCTGTGAAACCTTA
1 AGGGGAGGGGCAGGAGCGAAGCTGTGAAACCTTA
26206 AGGGGAGGGGCAGGAGCGAAGCTGTGAAACCTTA
1 AGGGGAGGGGCAGGAGCGAAGCTGTGAAACCTTA
**
26240 AGGGGAGGTTCAGGAGCGA
1 AGGGGAGGGGCAGGAGCGA
26259 CGAAGCCAGA
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
34 81 0.95
35 4 0.05
ACGTcount: A:0.30, C:0.14, G:0.45, T:0.11
Consensus pattern (34 bp):
AGGGGAGGGGCAGGAGCGAAGCTGTGAAACCTTA
Left flanking sequence: Indices 25637 -- 26136
TCTATCTGTCCTTCTCCCCGGGCAGACTCAGTATCCTTGGTTGAAAAAGGCCAGACCATAAAGAA
AAAAGAAAGAAGGGAAAGAGAAAGAAGGGAGAGGAAAAGAAAAGGAGAAAGAATACAGAGGAGCG
CAGCGAACATCCTTTCATTTGTTGTAGAGGTTCAGGTTACGGTTCTAGAGCTGATCTTTCTTGAC
TTACTCTTGAGTTGAATGAATCTTGAGTCTTTCCTTGAAACACTTCCCTTCAACCACAGTAAAGG
TAAAGAAAGGATAGGTTCAGGTTAATTAATCTTACCGACAGTAAAGGTTCAGGGGAGAAGCTGAT
AGTTGGAGAGGCCCAGGGGAAGGTTTTCTCTTTGTCTTTTACCGAGTTCAATCAGGTGTAGGAGT
CAACGAGAATGAATAAGGAGTCCCCATTCTTTCATAAGCTAAATAGGGGAAGGGAAGAGAGGTGA
GGGAGTGAAACCCTTGTTGTAGAGGGGTGAAAGAGCTCGACCGAG
Right flanking sequence: Indices 26259 -- 26758
CGAAGCCAGACAGCCAAGCCAGCCCATTTACCTTCAGAAATGAAAGAAGGGACAGTCAAAGGGGA
ATGAGTTCAGTGCCTAAACTCTTGAGTTCAGTCTTTCAAGCAGAATCAAAGAAAAGAGAAGAGAA
AGAAGCCCAGGTTCAGGGGCCAAGCCACGAGACGAGAAGAGGAGAGGCGAAGGGTTTCTCTTGCT
TGAGGATTGACTTCCAAATTACCTTGTCTTTGAGTTCAATTCAAGAATAAATAAATAGGGAGAGG
TGAATGAGTTTACTGTGTTTGAAGGTTCAGGGGAAGTAGTGATTGAGAAAGAGAAGTAGCGAACT
TTACTGTCTTTGTTTGAAGGGAGAGGTGAATGAGTGAAGTTCATAAACTCTCATTAATTAATCTT
GAGTTCAGTCTTTACAGTGAATAAATAGGTTCAGGGGCGAAGGTAAAGGAGTTCAATCAGGGAGC
GAAGCTGGGAGACAAAATAAAGCGAATGAGCGAAGCAGCTTTACC
Found at i:28273 original size:15 final size:15
Alignment explanation
Indices: 28250--28282 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
28240 GGGTCGTTAG
*
28250 CTCCTTATAAATGGA
1 CTCCGTATAAATGGA
28265 CTCCGTATAAATGGA
1 CTCCGTATAAATGGA
28280 CTC
1 CTC
28283 TGTCTCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (15 bp):
CTCCGTATAAATGGA
Left flanking sequence: Indices 27750 -- 28249
TTGCCAAATTTCTCACAGTTTTGTCTCTTATTACTGTTCGTAAGAACACTAAAATAAGATCAAGG
AAGGCACGGTTCTCCTCACCTAAATCAGATTGAAGAACTGAGATGTTGAGCCCATGATCTATGTT
ATCAAAACACTTTACAATATCTGACTTAATGAGTTTCTCAACCAGACCCCAGCGCTGGACTTCAA
GGAAGAAAGTAATAGGACCTCGACCTTTCCTAACCCAGCCTTTTACCCTAACCTAAAGAAGATTT
CCAACTAACTCTGGAGCAAATAAATCTCTTCAAAGAGAATATTCAATAACTGAGAAAGCGCATCC
AACCCAATGGTATCGTATCAGCCTTGTTTGTTGGGCTGGCTAATGGCTCGCAGCTCCCCAGGTTT
GTTTGGTTTGGGAATCCAGGTACATCGAGGAAAACGGCAAGGTAGAGTGAAAGAGTGCCCTTTTT
CATTTTTTGCAATGTCTGTCCTGTCCCTTGGGCTTGGGTCGTTAG
Right flanking sequence: Indices 28283 -- 28782
TGTCTCCCAAAGATCATCCATTATTTTGACTAACTTATCCATCAAATCCTTTTTTTGTGGATTAC
TCTCTTCTTCCCTCTTCAGAGTCAAAAAATCTTGATTGAACTTCTAGCATAGTAGTAAGGTAAGC
ATTGACTTTCTTTCTTTTTTTCTTCTTGGCTGGTTCTGAACGCTGCTTGCTGGTTGGTAAACTAA
GACAAATACAAGATGAACATTGTATCTCACCGTCTCTCATTCATTGTTACTCTTTTCTCCCGATT
TGCATTTCATTCGACTATTTCTTACGCGGAAAAGAATGTGATCTGTCGTCCTCCTCCTAAAATCA
ATAGCATTTCGTCGGAATAGGCATATTACGGATCCCTCATTCCCGGGCGCAAAATGTTTCAAAAA
AGGGGCGGTGGCCGGGTTGGTTATACCAACTAACACTTTCTTTTAAAAATGCTGTCCTTCTGTCT
GTCGAGATTGAAAAAGCAGCAAACATTAAAGAAAGAGATCGAAAT
Found at i:35505 original size:34 final size:34
Alignment explanation
Indices: 35462--35577 Score: 153
Period size: 34 Copynumber: 3.4 Consensus size: 34
35452 AAGAAGGTTC
* **
35462 AGGTTCAGGAGCGAAGCAATGAAACCTTAAGGGG
1 AGGTGCAGGAGCGAAGCTGTGAAACCTTAAGGGG
* *
35496 AGGGGCAGGAGCGAAGCTGTGAAACC-GACAGGGG
1 AGGTGCAGGAGCGAAGCTGTGAAACCTTA-AGGGG
*
35530 AGGTGAAGGAGCGAAGCTGTGAAACCTTAAGGGG
1 AGGTGCAGGAGCGAAGCTGTGAAACCTTAAGGGG
*
35564 AGGTTCAGGAGCGA
1 AGGTGCAGGAGCGA
35578 CGAAGCCACG
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
33 1 0.01
34 68 0.97
35 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.41, T:0.12
Consensus pattern (34 bp):
AGGTGCAGGAGCGAAGCTGTGAAACCTTAAGGGG
Left flanking sequence: Indices 34962 -- 35461
AGTGAAAGAAGAAATAGGAAAAGGAGCTCTAGCCACTCGACCAAGAGGGAGAGGAGCGAGGGGAA
AGATCAGTTTGCAACAAATCCATAGTTGGGGGCCTGCCTGATGAAATACATCCTTAGAATGACCT
GAGTGCCTAATGAGGTGAGGTCAAGGGCATTGATAGGGAAATGCACACACTTGTAGTCGTTTCAG
ATGCGATCAAAAAGCCTTTTTTTTCAAGCGGAGAGACTACATATGACGAAGATGCGAATAGAGAT
GCAGAAGTTCTTCAGTTAGAGGTGAAGGAGACAAGCAGAGGTGACGGTTTCTTCTTCTTTTCTTA
CAGGAGGAGAGGAAAAGAGTGAAATGAAAGAATAAATAGGGAGAGGTGATTGAGCTGATCTTTCA
TTTTCTTAGTTTACAGTGAATAAATAGGTGACGGTTCAGTAGTGATTGATAATTAATAAGGAGTA
ACGTCTTAGTTTACTGTGAAAGAAGAAAGAGGTGAAAGAAGGTTC
Right flanking sequence: Indices 35578 -- 36077
CGAAGCCACGAGACCGTAAAATAGCTTTACCGAGGTTACTGTGTTTGAATAAATAGGTGAAGTAG
GGAATAGAATAGAGGTTCCGGGGCAGGTTCAGGTTCAGTAGTTCTGTCTCATTAATCTTTGTTAC
AGGAGAGTAAGTTCAATGAAAGAAAAAATAGGGTACGGAGTCAACCAACTCGAATTCATCGAGAG
TTTCGTCTTAGTTTACCGTTCAATCTGGTTCAGGATAAATCATCGGAAAGGTGCGAAGCAAGCAG
TGAGACCTTGTTTACCTCCTGAAATAAGGAATAAATAGGGACAAGTGAAGGAGCTTGACCTGATT
CTCATCCTTCCAGCCTTCCGAACCAATTACCTGATAAATAGCCCAAAAAATAGACAGAGGATAGG
ATTTGATCCTCAAAAATAGGGAGAGGATAGAATTTCTTTATTTCTGGTCTTTACAGGATCAGGAG
TCTTTGTCTTGTCTCCCTTCTTTCTCTTTCCCTTCTTTCAAACAC
Found at i:37052 original size:31 final size:30
Alignment explanation
Indices: 37014--37251 Score: 145
Period size: 31 Copynumber: 7.7 Consensus size: 30
37004 GAAATCAGGG
37014 ATTTGATCCCCAAAAATAGGG-AGAAGATAAC
1 ATTTGATCCCCAAAAATAGGGTA-AAGAT-AC
* * *
37045 ATTTGATCCCTAAAAATAGGG-AGAGGATAGGA
1 ATTTGATCCCCAAAAATAGGGTA-AAGATA--C
**
37077 AAAT-ATCCCCAAAAATAGGGTAAAGCAT-C
1 ATTTGATCCCCAAAAATAGGGTAAAG-ATAC
37106 GATTTGATCCCTC-AAAATAGGGTAAAGCAT-C
1 -ATTTGATCCC-CAAAAATAGGGTAAAG-ATAC
* * *
37137 GATTTGATCCCTAAAAATAGGG-AGAGGATAGG
1 -ATTTGATCCCCAAAAATAGGGTA-AAGATA-C
37169 ATTTGATCCCTC-AAAATAGGGTAAAGATAC
1 ATTTGATCCC-CAAAAATAGGGTAAAGATAC
** *
37199 ACTTTTCTCCCTC-AAAATAGGGTAAAGCATCC
1 A-TTTGATCCC-CAAAAATAGGGTAAAG-ATAC
*
37231 ATTTTATCCCTC-AAAATAGGG
1 ATTTGATCCC-CAAAAATAGGG
37252 GGGAGGATAG
Statistics
Matches: 172, Mismatches: 20, Indels: 30
0.77 0.09 0.14
Matches are distributed among these distances:
30 7 0.04
31 154 0.90
32 11 0.06
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (30 bp):
ATTTGATCCCCAAAAATAGGGTAAAGATAC
Left flanking sequence: Indices 36514 -- 37013
GAGTTCAGTCTTAGTTTACAGTTCAAGAAGAAATAGGGACAAGTGATTGAGTGAAGCAAGCAGTG
AGACCAATAGAATAGGTGAAAGAGGATTGAATGAATTTACTCTCATGTAAAGGAGCGAAGCGACC
TTGTTTACAGTTCAAGAAAGGATCAGATCAAGAAGCCGAGCCGAGGTTCAGTCTCTTTCCGAACT
AATTACCTAAAAAATAGGGATTTGATCCCAAAAAATAGGGTAAAGATAGAATGAATCTTGAGGAT
TTACTGACAGTTCACTCTCAGTCATAAATAGTCTTTACTGTTTCAATAGGGTAAAGCATCCATTT
TATCCCAAAAAATAGGGAGAGGATAGAATAGAATTTGATAATTAATGGTACTTACAGTCTCATTC
AGAAAGAAATAGGTTACGGAATCTTGAGTTTCGTCTTTCCTTTCTTTCGGGCTTGCTGGGTTGGA
AGGAACTGGCTTGCTTGCTTTCACTCTTTTACCCGGAAATCAGGG
Right flanking sequence: Indices 37252 -- 37751
GGGAGGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCGATTACGAACTTTGAC
AGTTATATGGGGATAGAATTTCTTTGCTTTCCTATGCTGCTATTAGTTCAAAAGGTCTTTTAATG
TTTTACCCCTATGTTGGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCTCTTA
CGAACTTTGACCCGTGGATACAAAATCTTTTCTTTCTGGTCTTTACAGGAAAAAGAGTGTTTGAG
GGTTCTGTCTCATTAATCGGAAAGGTGCGAAGCTGTGAGACCGAGTTTACAGTTCCATCAGGTTC
AGGAGAAAGACCCTCTTCTCATCCAGCTTACCTAGTGAAACCCAAGGGAAAGAAAAGAAAGAGCT
ACTTCACCTATTTACCGAGTTCGTTCAGTAGTTCAGGCAATGGAATTGGGAAACCGACAGACAGG
TGAATGAGTTTACCGAATTCAAGAATAAAGAGGAGAAAGAACAGA
Found at i:37147 original size:62 final size:62
Alignment explanation
Indices: 37013--37251 Score: 217
Period size: 62 Copynumber: 3.9 Consensus size: 62
37003 GGAAATCAGG
* * *
37013 GATTTGATCCCCAAAAATAGGGAGAAG-ATAAC-ATTTGATCCCTAAAAATAGGG-AGAGGATAG
1 GATTTGATCCCCAAAAATAGGGA-AAGCAT-ACGATTTGATCCCTCAAAATAGGGTA-AAGATAC
**
37075 GAAAAT-ATCCCCAAAAATAGGGTAAAGCAT-CGATTTGATCCCTCAAAATAGGGTAAAGCAT-C
1 G-ATTTGATCCCCAAAAATAGGG-AAAGCATACGATTTGATCCCTCAAAATAGGGTAAAG-ATAC
* * * *
37137 GATTTGATCCCTAAAAATAGGGAGAGGATAGGATTTGATCCCTCAAAATAGGGTAAAGATAC
1 GATTTGATCCCCAAAAATAGGGAAAGCATACGATTTGATCCCTCAAAATAGGGTAAAGATAC
** * *
37199 -ACTTTTCTCCCTC-AAAATAGGGTAAAGCAT-CCATTTTATCCCTCAAAATAGGG
1 GA-TTTGATCCC-CAAAAATAGGG-AAAGCATACGATTTGATCCCTCAAAATAGGG
37252 GGGAGGATAG
Statistics
Matches: 146, Mismatches: 19, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
61 11 0.08
62 122 0.84
63 13 0.09
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (62 bp):
GATTTGATCCCCAAAAATAGGGAAAGCATACGATTTGATCCCTCAAAATAGGGTAAAGATAC
Left flanking sequence: Indices 36513 -- 37012
TGAGTTCAGTCTTAGTTTACAGTTCAAGAAGAAATAGGGACAAGTGATTGAGTGAAGCAAGCAGT
GAGACCAATAGAATAGGTGAAAGAGGATTGAATGAATTTACTCTCATGTAAAGGAGCGAAGCGAC
CTTGTTTACAGTTCAAGAAAGGATCAGATCAAGAAGCCGAGCCGAGGTTCAGTCTCTTTCCGAAC
TAATTACCTAAAAAATAGGGATTTGATCCCAAAAAATAGGGTAAAGATAGAATGAATCTTGAGGA
TTTACTGACAGTTCACTCTCAGTCATAAATAGTCTTTACTGTTTCAATAGGGTAAAGCATCCATT
TTATCCCAAAAAATAGGGAGAGGATAGAATAGAATTTGATAATTAATGGTACTTACAGTCTCATT
CAGAAAGAAATAGGTTACGGAATCTTGAGTTTCGTCTTTCCTTTCTTTCGGGCTTGCTGGGTTGG
AAGGAACTGGCTTGCTTGCTTTCACTCTTTTACCCGGAAATCAGG
Right flanking sequence: Indices 37252 -- 37751
GGGAGGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCGATTACGAACTTTGAC
AGTTATATGGGGATAGAATTTCTTTGCTTTCCTATGCTGCTATTAGTTCAAAAGGTCTTTTAATG
TTTTACCCCTATGTTGGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCTCTTA
CGAACTTTGACCCGTGGATACAAAATCTTTTCTTTCTGGTCTTTACAGGAAAAAGAGTGTTTGAG
GGTTCTGTCTCATTAATCGGAAAGGTGCGAAGCTGTGAGACCGAGTTTACAGTTCCATCAGGTTC
AGGAGAAAGACCCTCTTCTCATCCAGCTTACCTAGTGAAACCCAAGGGAAAGAAAAGAAAGAGCT
ACTTCACCTATTTACCGAGTTCGTTCAGTAGTTCAGGCAATGGAATTGGGAAACCGACAGACAGG
TGAATGAGTTTACCGAATTCAAGAATAAAGAGGAGAAAGAACAGA
Found at i:37178 original size:93 final size:91
Alignment explanation
Indices: 37013--37266 Score: 286
Period size: 93 Copynumber: 2.7 Consensus size: 91
37003 GGAAATCAGG
37013 GATTTGATCCC-CAAAAATAGGG-AGAAG-ATAACATTTGATCCCTAAAAATAGGGAGAGGATAG
1 GATTTGATCCCTC-AAAATAGGGTA-AAGCAT--CATTTGATCCCTAAAAATAGGGAGAGGATAG
**
37075 GAAAATATCCC-CAAAAATAGGGTAAAGCAT-C
62 G-ATTTATCCCTC-AAAATAGGGTAAAG-ATAC
37106 GATTTGATCCCTCAAAATAGGGTAAAGCATCGATTTGATCCCTAAAAATAGGGAGAGGATAGGAT
1 GATTTGATCCCTCAAAATAGGGTAAAGCATC-ATTTGATCCCTAAAAATAGGGAGAGGATAGGAT
37171 TTGATCCCTCAAAATAGGGTAAAGATAC
65 TT-ATCCCTCAAAATAGGGTAAAGATAC
** * * * *
37199 -ACTTTTCTCCCTCAAAATAGGGTAAAGCATCCATTTTATCCCTCAAAATAGGGGGGAGGATAGA
1 GA-TTTGATCCCTCAAAATAGGGTAAAGCAT-CATTTGATCCCTAAAAATA-GGGAGAGGATAGG
37263 ATTT
63 ATTT
37267 CTTTTCTTGA
Statistics
Matches: 143, Mismatches: 8, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
92 6 0.04
93 116 0.81
94 21 0.15
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (91 bp):
GATTTGATCCCTCAAAATAGGGTAAAGCATCATTTGATCCCTAAAAATAGGGAGAGGATAGGATT
TATCCCTCAAAATAGGGTAAAGATAC
Left flanking sequence: Indices 36513 -- 37012
TGAGTTCAGTCTTAGTTTACAGTTCAAGAAGAAATAGGGACAAGTGATTGAGTGAAGCAAGCAGT
GAGACCAATAGAATAGGTGAAAGAGGATTGAATGAATTTACTCTCATGTAAAGGAGCGAAGCGAC
CTTGTTTACAGTTCAAGAAAGGATCAGATCAAGAAGCCGAGCCGAGGTTCAGTCTCTTTCCGAAC
TAATTACCTAAAAAATAGGGATTTGATCCCAAAAAATAGGGTAAAGATAGAATGAATCTTGAGGA
TTTACTGACAGTTCACTCTCAGTCATAAATAGTCTTTACTGTTTCAATAGGGTAAAGCATCCATT
TTATCCCAAAAAATAGGGAGAGGATAGAATAGAATTTGATAATTAATGGTACTTACAGTCTCATT
CAGAAAGAAATAGGTTACGGAATCTTGAGTTTCGTCTTTCCTTTCTTTCGGGCTTGCTGGGTTGG
AAGGAACTGGCTTGCTTGCTTTCACTCTTTTACCCGGAAATCAGG
Right flanking sequence: Indices 37267 -- 37766
CTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCGATTACGAACTTTGACAGTTATATGGGGATA
GAATTTCTTTGCTTTCCTATGCTGCTATTAGTTCAAAAGGTCTTTTAATGTTTTACCCCTATGTT
GGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCTCTTACGAACTTTGACCCGT
GGATACAAAATCTTTTCTTTCTGGTCTTTACAGGAAAAAGAGTGTTTGAGGGTTCTGTCTCATTA
ATCGGAAAGGTGCGAAGCTGTGAGACCGAGTTTACAGTTCCATCAGGTTCAGGAGAAAGACCCTC
TTCTCATCCAGCTTACCTAGTGAAACCCAAGGGAAAGAAAAGAAAGAGCTACTTCACCTATTTAC
CGAGTTCGTTCAGTAGTTCAGGCAATGGAATTGGGAAACCGACAGACAGGTGAATGAGTTTACCG
AATTCAAGAATAAAGAGGAGAAAGAACAGATTCGAGACAGACCGA
Found at i:37341 original size:71 final size:70
Alignment explanation
Indices: 37256--37457 Score: 192
Period size: 71 Copynumber: 2.9 Consensus size: 70
37246 ATAGGGGGGA
* **
37256 GGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCGATTACGAACTTTGACAGTT
1 GGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCTATTACGAACTTTGACACCT
37321 ATATGG
66 ATAT-G
* ***** * * * ** * *
37327 GGATAGAATTTCTTTGCTTTCCTATGCTGCTATTAGTTCAAAAGGTCTTTTA--ATGTTTTACCC
1 GGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAA-G-CTATTACGAACTTTGACAC
* *
37390 CTATGTT
64 CTATATG
*
37397 GGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCTCTTACGAACTTTGAC
1 GGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCTATTACGAACTTTGAC
37458 CCGTGGATAC
Statistics
Matches: 97, Mismatches: 30, Indels: 9
0.71 0.22 0.07
Matches are distributed among these distances:
68 5 0.05
69 1 0.01
70 41 0.42
71 45 0.46
72 1 0.01
73 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.39
Consensus pattern (70 bp):
GGATAGAATTTCTTTTCTTGAAGCTCCCGCTATTAGTTCAAAAGCTATTACGAACTTTGACACCT
ATATG
Left flanking sequence: Indices 36756 -- 37255
AGAATGAATCTTGAGGATTTACTGACAGTTCACTCTCAGTCATAAATAGTCTTTACTGTTTCAAT
AGGGTAAAGCATCCATTTTATCCCAAAAAATAGGGAGAGGATAGAATAGAATTTGATAATTAATG
GTACTTACAGTCTCATTCAGAAAGAAATAGGTTACGGAATCTTGAGTTTCGTCTTTCCTTTCTTT
CGGGCTTGCTGGGTTGGAAGGAACTGGCTTGCTTGCTTTCACTCTTTTACCCGGAAATCAGGGAT
TTGATCCCCAAAAATAGGGAGAAGATAACATTTGATCCCTAAAAATAGGGAGAGGATAGGAAAAT
ATCCCCAAAAATAGGGTAAAGCATCGATTTGATCCCTCAAAATAGGGTAAAGCATCGATTTGATC
CCTAAAAATAGGGAGAGGATAGGATTTGATCCCTCAAAATAGGGTAAAGATACACTTTTCTCCCT
CAAAATAGGGTAAAGCATCCATTTTATCCCTCAAAATAGGGGGGA
Right flanking sequence: Indices 37458 -- 37957
CCGTGGATACAAAATCTTTTCTTTCTGGTCTTTACAGGAAAAAGAGTGTTTGAGGGTTCTGTCTC
ATTAATCGGAAAGGTGCGAAGCTGTGAGACCGAGTTTACAGTTCCATCAGGTTCAGGAGAAAGAC
CCTCTTCTCATCCAGCTTACCTAGTGAAACCCAAGGGAAAGAAAAGAAAGAGCTACTTCACCTAT
TTACCGAGTTCGTTCAGTAGTTCAGGCAATGGAATTGGGAAACCGACAGACAGGTGAATGAGTTT
ACCGAATTCAAGAATAAAGAGGAGAAAGAACAGATTCGAGACAGACCGAAGGAGAGAAGCAGAGG
TGACGGTTTCTTCTTCTTTTCTTACAGTTCCATCTGGGACAGGAGTGATTGATCATTACATTAAT
AGGAGTTAAGTCGAATTCATCTTGCTTTCGTTTCGTCTTAGTTTACAGTTCAAGAAGAAATAGGA
AAAGGAGTCAACTCTCATTCATAAGGAGTCTTGCCTTCCTCCTGG
Found at i:55363 original size:31 final size:31
Alignment explanation
Indices: 55328--55391 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
55318 CATGAGCATC
* **
55328 GATTTGATCCCAAAAAATAGGGAGAAGATAG
1 GATTTGATCCAAAAAAATAGACAGAAGATAG
55359 GATTTGATCCAAAAAAATAGACAGAAGATAG
1 GATTTGATCCAAAAAAATAGACAGAAGATAG
55390 GA
1 GA
55392 GAATTCTGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.09, G:0.23, T:0.19
Consensus pattern (31 bp):
GATTTGATCCAAAAAAATAGACAGAAGATAG
Left flanking sequence: Indices 54828 -- 55327
TCATTAATCCATGGTCTCACTCGAAACAGAGTCCTTCATAAAAGCTATTAATGACCCAACATCAC
GTCGGATTAAAGTTCAGTCACAACAGGCTTCCTCATATGAGTATGACGCTTATTTCTTTTTAGAA
AATGGGGAAAGACGAATAGAGACTGACTAAGGAGAGGGGAGAAGATCAGCTGCGAGACCGAGCTC
CATGAGAAAGAAAGAAAGAAAGAAACACCTATTTACCGAGTGAAAGAATAACGAACGAACAATAA
CAAGAATGAAAGAGAAAGAAGAGACCGAGGTTACAGTGAAGAAAGTGATTGAGTGAGTGAAGGGG
AATCAAATGGAAGAAGAAAAGAGAAGAGACCGGCGTTGAGTCTTGACTTGAAACACTTGATGAAT
AAGGAGAAAGATCTGTTAAAGAATAAATAGGTGATTGAGCTTTACCTTGTTCAATCCGGTCAGGT
AATATCGGTTCAGGCAGAAGAAGAAAATTCAGGTTCATGAGCATC
Right flanking sequence: Indices 55392 -- 55891
GAATTCTGGTTTTAGTAGTCTTTACAGTCGAGTTCCAGAGTTCAATCCTCAAAAATAGCCCGCAA
AATAGGGTAAAGCATCCATTTTACCCCAAAAAATAGGGAGAGGATAGAATTGATTTCTTTCTGGT
CTTTACTGGATCAGGAGTCTTTGTCTTGTCTCCCTTCTTTCTCTTTCCCTTCATTCTTGAACTGT
AAAGAAACTCTCATTCTTCTTGAGTAGAGTCTTGACTTCCTAATTACCTAGGCCCTAAATACCTC
AAAAATATCCCCAAAAATAGGGAGAAGATAGGATTTGATCCCTAAAAATAGGGAGAAGATACAAG
AAATTCATTCATGGTCCTAACACGAAAAAGAGTTCAAGAAGGAAAAGGTTACGGGTTGAGGTTCA
GTAAGTAGGGAGAGGGGCAAAGCAATGAGACGAGAAGAGGATCGGAGTTCAGGAGTGAAGTAGTT
CCGTAGAGAAGCTGATAGTTTACGAGTTCAATCTGTCTGACGAAT
Found at i:61479 original size:13 final size:13
Alignment explanation
Indices: 61461--61489 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
61451 CAGCAGCGGC
61461 ATTCTCCCTATCA
1 ATTCTCCCTATCA
61474 ATTCTCCCTATCA
1 ATTCTCCCTATCA
61487 ATT
1 ATT
61490 ATTCAACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.00, T:0.41
Consensus pattern (13 bp):
ATTCTCCCTATCA
Left flanking sequence: Indices 60961 -- 61460
GGTAGTTGGTGATTCGATACCTGCATCTGTGGGGAAGAATGTCTATCAAACTCAAGGGTTTAGTT
AGGGAAGGATTCCCATTAGCAAGGAAAGAGAAGACGACTGACTACTTTTGTTTTGTGCTGTACTA
GATAAGGGTTAGGTATACTAAGAGAAAAGCCTATTTGCCAATGGTTACAATGTATTTGATCTAGT
AATTCTCATTCCCCCTCTTTTTGACCCTATATAGACATATAATGGGTTAGATTAATATCCATGTA
TTATCTAGTAATTCTCATTCCCCCTCTTTTGGATACTCTTTCTTTAGACATAACATCCCACTCTT
TGATCTTCGATTATGTCTTATTATCTTTTCGGAGACTCCCCACTTCTTTTTGGTATATCCAATTC
AGTCTATATTATCTAATCTTTCTATTATACAACTTCTGGTAATGTCTCAATATAACTAAATCAAA
TCTCATTGTATAGTTTGATTATGTGTAACTTATCTCAGCAGCGGC
Right flanking sequence: Indices 61490 -- 61989
ATTCAACCTACAATCACGATTTACCAACAAGTCTTGGGTAACAAACAACTCATTCAGAATTTAGG
TCAAAAGAAAGGAGGAGTCCAAATCAGAATTAATAAGGGTTTGGACCTCTTTCTACAAGAGCTAT
GAATCTAGTCAGATATATATATGGGGATTATGTGATCAGTCAATCATATCAGTATAAGGATCAAG
CAAGTATTTGACTGAATAATGGAAAAGAAGGAAGGATTCCCATTAAGTTTAAGTAATGATATGAA
TTATAGAAAATCCAAATAGAGATTGAGGACCTGACAATGACATTCGATGATCAATCCTTCAGTCA
GTTCCAAATAGAATCAAGATATGAATATCAGACCAGATGCTATAAATGCAAAGGATTCTCTTAAG
TTATGTTTCACTCACGTTAATGAGATTTCATTACTTTTGGGCAATATACGATTGAGGCATTAATA
GTTCATGTTCCATCTATGATGTTGAATACCGTTGATTATAACAAT
Found at i:62487 original size:13 final size:14
Alignment explanation
Indices: 62452--62502 Score: 52
Period size: 13 Copynumber: 3.7 Consensus size: 14
62442 TTTACCGAGT
*
62452 GAAAGAGGGAAAGAA
1 GAAAGAGAG-AAGAA
*
62467 GGAAGAGAGAAG-A
1 GAAAGAGAGAAGAA
62480 GAAAGAGA-AAGAA
1 GAAAGAGAGAAGAA
*
62493 GGAAGAGAGA
1 GAAAGAGAGA
62503 GGATTGACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
12 3 0.10
13 16 0.53
14 4 0.13
15 7 0.23
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
GAAAGAGAGAAGAA
Left flanking sequence: Indices 61952 -- 62451
TTCCATCTATGATGTTGAATACCGTTGATTATAACAATTCTTTAGTTCGTGGGGAAGCTCATGTG
AAAGAAAAAGTGGGATAACTCCCAGCGCCAGATTCGGAAAAAAGATGATGGGTCTGGATTACATT
ATTGGCGACACTATTAAGAATGAGGAGTCAGATTCGGCCAAACAAATACAAGGTCAATGACAGCA
AGAAAACAGAACTCTTATTGAATACCCCTTGTATCTATCAAAAGATTGAACAAACTAAACATCAG
GACCCGCATTCAGGGTTAATCAATCATAGCATCCCATCACTTCGGCGAACCTTACCCTCAACGAT
ATTGACCTTGGCTTACAACAATGGATCTCTTAATACAGAAAGCTTACCCATCCTTATCAGGTTAC
GGGAAGTTCACAATTTGATTTGCAATGAAGCGATCTTACAGAGAGGAGAGAGTGTGTGAGACCCT
AAAGTAAAGGACAGAAGAGAAGATGCAAACACCCATTTACCGAGT
Right flanking sequence: Indices 62503 -- 63002
GGATTGACTTCCAGTTCACTCTCATTGATTCTTCGATAGTCTTTCCTGACAGTGAACGATCATTG
ATTCTTTCATAGGATTGACTTCTACTTCAACATTACCTCTGCCCTAAATACCGGGATTTGATCCC
GAAAAAGAGGGTAAAGATACACTTTTATACCTCAAAATACGGGAAAGATAGAATTATTTCTTGTT
TTTTGAGTGTTTACAGTCGAGTTACCGAGGGAAATCAGGGTAAAGCATCCATTTTATACCCTAAA
ATACGGGAAAGATAGAATTTCTTTTCTTGAAGCTGCTGCTATTAAGGGAAAAACCTCTGACGAAC
TTTGACAGTTATATTGGATAGAATTTCTTTTCTTGAAACAGCTTTACCGAGGGAAAAACCTCTTA
CGAACTTTGACCCCTATGCTGGATAGAAAATCTTTTCTTTCTGGTCTTTACAGTCGAATGAATCT
TTCATTAGATTCTCCCTTCAAGCATAGGTGCTCATGCAGCTCCTT
Found at i:62492 original size:15 final size:15
Alignment explanation
Indices: 62454--62502 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
62444 TACCGAGTGA
*
62454 AAGAGGGAAAGAAGG
1 AAGAGAGAAAGAAGG
62469 AAGAGAG-AAG-A-G
1 AAGAGAGAAAGAAGG
62481 AA-AGAGAAAGAAGG
1 AAGAGAGAAAGAAGG
62495 AAGAGAGA
1 AAGAGAGA
62503 GGATTGACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
11 4 0.14
12 6 0.21
13 2 0.07
14 6 0.21
15 11 0.38
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (15 bp):
AAGAGAGAAAGAAGG
Left flanking sequence: Indices 61954 -- 62453
CCATCTATGATGTTGAATACCGTTGATTATAACAATTCTTTAGTTCGTGGGGAAGCTCATGTGAA
AGAAAAAGTGGGATAACTCCCAGCGCCAGATTCGGAAAAAAGATGATGGGTCTGGATTACATTAT
TGGCGACACTATTAAGAATGAGGAGTCAGATTCGGCCAAACAAATACAAGGTCAATGACAGCAAG
AAAACAGAACTCTTATTGAATACCCCTTGTATCTATCAAAAGATTGAACAAACTAAACATCAGGA
CCCGCATTCAGGGTTAATCAATCATAGCATCCCATCACTTCGGCGAACCTTACCCTCAACGATAT
TGACCTTGGCTTACAACAATGGATCTCTTAATACAGAAAGCTTACCCATCCTTATCAGGTTACGG
GAAGTTCACAATTTGATTTGCAATGAAGCGATCTTACAGAGAGGAGAGAGTGTGTGAGACCCTAA
AGTAAAGGACAGAAGAGAAGATGCAAACACCCATTTACCGAGTGA
Right flanking sequence: Indices 62503 -- 63002
GGATTGACTTCCAGTTCACTCTCATTGATTCTTCGATAGTCTTTCCTGACAGTGAACGATCATTG
ATTCTTTCATAGGATTGACTTCTACTTCAACATTACCTCTGCCCTAAATACCGGGATTTGATCCC
GAAAAAGAGGGTAAAGATACACTTTTATACCTCAAAATACGGGAAAGATAGAATTATTTCTTGTT
TTTTGAGTGTTTACAGTCGAGTTACCGAGGGAAATCAGGGTAAAGCATCCATTTTATACCCTAAA
ATACGGGAAAGATAGAATTTCTTTTCTTGAAGCTGCTGCTATTAAGGGAAAAACCTCTGACGAAC
TTTGACAGTTATATTGGATAGAATTTCTTTTCTTGAAACAGCTTTACCGAGGGAAAAACCTCTTA
CGAACTTTGACCCCTATGCTGGATAGAAAATCTTTTCTTTCTGGTCTTTACAGTCGAATGAATCT
TTCATTAGATTCTCCCTTCAAGCATAGGTGCTCATGCAGCTCCTT
Found at i:62916 original size:70 final size:71
Alignment explanation
Indices: 62773--62931 Score: 185
Period size: 70 Copynumber: 2.3 Consensus size: 71
62763 ATACGGGAAA
* * ** **
62773 GATAGAATTTCTTTTCTTGAAGCTGCTGCTATTAAGGGAAAAACCTCTGACGAACTTTGACAGTT
1 GATAGAATTTCTTTTCTTGAAACAGCTGCTACCAAGGGAAAAACCTCTGACGAACTTTGACACCT
*
62838 ATATTG
66 ATACTG
* * * *
62844 GATAGAATTTCTTTTCTTGAAACAGCT-TTACCGAGGGAAAAACCTCTTACGAACTTTGACCCCT
1 GATAGAATTTCTTTTCTTGAAACAGCTGCTACCAAGGGAAAAACCTCTGACGAACTTTGACACCT
*
62908 ATGCTG
66 ATACTG
**
62914 GATAGAAAATCTTTTCTT
1 GATAGAATTTCTTTTCTT
62932 TCTGGTCTTT
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
70 49 0.66
71 25 0.34
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (71 bp):
GATAGAATTTCTTTTCTTGAAACAGCTGCTACCAAGGGAAAAACCTCTGACGAACTTTGACACCT
ATACTG
Left flanking sequence: Indices 62273 -- 62772
CGATATTGACCTTGGCTTACAACAATGGATCTCTTAATACAGAAAGCTTACCCATCCTTATCAGG
TTACGGGAAGTTCACAATTTGATTTGCAATGAAGCGATCTTACAGAGAGGAGAGAGTGTGTGAGA
CCCTAAAGTAAAGGACAGAAGAGAAGATGCAAACACCCATTTACCGAGTGAAAGAGGGAAAGAAG
GAAGAGAGAAGAGAAAGAGAAAGAAGGAAGAGAGAGGATTGACTTCCAGTTCACTCTCATTGATT
CTTCGATAGTCTTTCCTGACAGTGAACGATCATTGATTCTTTCATAGGATTGACTTCTACTTCAA
CATTACCTCTGCCCTAAATACCGGGATTTGATCCCGAAAAAGAGGGTAAAGATACACTTTTATAC
CTCAAAATACGGGAAAGATAGAATTATTTCTTGTTTTTTGAGTGTTTACAGTCGAGTTACCGAGG
GAAATCAGGGTAAAGCATCCATTTTATACCCTAAAATACGGGAAA
Right flanking sequence: Indices 62932 -- 63431
TCTGGTCTTTACAGTCGAATGAATCTTTCATTAGATTCTCCCTTCAAGCATAGGTGCTCATGCAG
CTCCTTTTCCTATTCCTCCTATTTATGAACTGTAAAGGAGTTCAATCAAGTTCAGGTTCCGGATT
TCATTCATTGACTCGAAAAGAAAGGTTAGCTTTACCTCCATCAATAAGGCAAGGAAATATCGTCT
TTGGTTCCGGATTGAATGAATAGCTTTACCTCCTTCAAGGAATAGAGTCTTTGGTTCCGGTCAGG
TAATAAAGTCAAAGGTGTAGGTCAGGGAATCCTAAATAAGCTCGAGTCAGCTTAAGATTAAGACC
AAAGGAAGTTTGTTTGTTCCCACGGAGTTCTCTGTTCCCGATCTACTGCTATTGGTGCTTGCTCT
TCTATTTGTTCTCTCTCTATATATAGAAGAAGAAAAGAAGAAATGTATTCGCGCACGGTTAGTTG
TACTTGTTTGTTTTCACCGGCGTTGAATTTGAAGCCCTCGGCTGA
Found at i:64184 original size:22 final size:22
Alignment explanation
Indices: 64158--64202 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
64148 GGGCTATCTT
64158 GTAGTTTAGCGTCAAGAAGCTA
1 GTAGTTTAGCGTCAAGAAGCTA
64180 GTAGTTTAGCGTCAAGAAGCTA
1 GTAGTTTAGCGTCAAGAAGCTA
64202 G
1 G
64203 GGGGCAAGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (22 bp):
GTAGTTTAGCGTCAAGAAGCTA
Left flanking sequence: Indices 63658 -- 64157
TTGTGTTTGATTTTTCGGCAAAACGAACCCAAAGAAAGGGCATAGGCGATCATTGGGATACCTTT
TTTTCTTCTATACGCTACGCTCGCTATTTGGCTTGTCTTGTTAGGCCAGCCCGAAAGAAATCCCC
GTCTCCAAGTCCTTCCTTTATAACTAATCCCCAGGTGCGAAGCGTGTGGGCAGTGCAGTAAAGGT
TGCTAGCCTTCTCGAAGGGGCGTAGCCAATTAACATATTCTTATTCTTTTTCTCGAGAGAGACCG
TGTGATGTTGGTTCCACGCGAATTCCATCCGGGAAATATAGCACAAATAAAGATCCGGAAGTTGT
TTGGGAGGGAGTCTCTTTTTTCCACGTTATCGGAGAGCTATCATCGGGTAGAGCCCTGTTATCTC
ATTTTGGCCCTGTAGTAGATACTCTGACTCTCCCCTGCGCCTGCTATTATCAAATTCTCATCTAC
CTACTTCTCCTTCTTCTCCTTTCAAGAGGTATGGAGGGCTATCTT
Right flanking sequence: Indices 64203 -- 64702
GGGGCAAGCGTTGTACGGCAAATGACTTATCCATGTATGGTAAAGGTCAAGGGACTGCCTCCTGG
AAGTGCTTTCTTCAAATAAATGAGAGTGCCCCTCAACAAGGTGTATGTAAAGTCAAGTACATTTG
GTTACCGACCGAGGTGATCAATTGACATTGACCTCTCTTTGAACTAAGTCATTCATTTTCCCACT
CAAAGAAAGAGAACAGCAGAAGTCAGGGGTAGGAAATCAAGCAAAGCCATTCTTCAATTGTTGAT
AACAAGCCGTTCATCACTCCCTAGGTTTCTCGCAGAGCACCTTTGGGACATCCAATCATCGATAA
GACCAGTAAGCATGCCTCTTGTTTGTTCAAAGCGGGATAATTCTCTCTCTTTTTGAATGGAAGAA
CTCCACCTCTGGCTACCGAAGGCCTTATTGTAGCAGCAGCTCCGTGAAAGACAGTCAGTCCTCTT
ACCTTGTTTAGCTATTTCAGGCATAGTTAGGAGGATGGTCTAAAT
Found at i:72769 original size:34 final size:34
Alignment explanation
Indices: 72731--72800 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
72721 TTCATCGATA
*
72731 GTCTTTCCTTCCAGTTCCCTCTCATTCATCTTTC
1 GTCTTTCCTTCCAGTTCACTCTCATTCATCTTTC
*
72765 GTCTTTCCTTCCAGTTCAGTCTCATTCATCTTTC
1 GTCTTTCCTTCCAGTTCACTCTCATTCATCTTTC
72799 GT
1 GT
72801 GTTTACTCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.10, C:0.34, G:0.09, T:0.47
Consensus pattern (34 bp):
GTCTTTCCTTCCAGTTCACTCTCATTCATCTTTC
Left flanking sequence: Indices 72231 -- 72730
TGAAAGGCTAAGACAGAGAGGAGCGAAGCAAGCAGTGAAAGAAGAAATAGGTGAAGGAGAGAAGC
AAGCCTATTTACCTTGTGAAAGAGTGAACAGAGTGAAAGAAGGATCAGAGAAAGAATGAATAAGG
AGTGTTTACAGGAGAGGAAAAGAGTGAAAGAATAATCCTCCAGTTTACAGTTCAAGAAAGAAGGG
ACAGGTTCAGCAGGATCATTCTTGCTTGCTTCTTTCTTACAGCAGGAAGGAGAGGAAAAGAGTGA
AAGAATAATCCTCCAGCCTATTTGTGTTTGAGTTCAATGAAAGCAAAAATAGGGAAGTCTTTGGT
TTAAGGTTTCGGCTTGACTTAAACATTACCTCGGCCCAAAATCTCCCTCAAAATAGGGAGAGGAT
AGAATTAATTAATAAATGGTCTTTACAGAATAAGGAGTGAACGAAGTAGGAGTCTTTGTCTTTCT
TTCGGCTCCCTTTATTCTTGAACTGTAAAGTCGAATTCATCGATA
Right flanking sequence: Indices 72801 -- 73300
GTTTACTCCCTTCAAACACACACTTACAACTCTTTCTTGTCTTGCTTTCGTCTTTCAAAGCAGCT
AAGGCAATGGAATTGTGAGACCTAAGAATGAGCGAAGCCGTGAGACTGTAAAGGAAAGGAGAGGA
GTGAAATCAGGTTCATGAGTTTACAGTTCATTCATAAATAGGTTAAGGGGAAGGATCAGATCAAG
AATAGTCTTTCCCTTGTTCCATCAGTCAAAGGTTTAAGGTTTTCTCTTTCTTCTTTCCTTCCTAA
TTCATTTATTCTTGAACTGTAAAGAGGTTCCGGTTCAGGTTCAGGTTTTCGGTTTCGTCTTACCT
ACTCCACTAAAAGCTTTTCAGATCCTTCTTCTCTCTTTTGGTATTCTAAGTCAATCAGCTATACA
TCTTCCTTGCATCTTGGTATGGTACAAATCGATTAGGAATGAGCGTAGCGCAGTAGCTGTTGTTC
TTGTGGTCTGTATAGCAGCGTAGAGTAGTAGTGATCTCTTCTCAC
Found at i:76803 original size:31 final size:31
Alignment explanation
Indices: 76768--76883 Score: 171
Period size: 31 Copynumber: 3.7 Consensus size: 31
76758 TTTACTGTTG
*
76768 AAATAGGGTAAAGATACACTTTTCTCCCTAA
1 AAATAGGGTAAAGATACACTTTTCTCCCTCA
** * *
76799 AAATA-GACAGAAGATAGACTTTTATCCCTCA
1 AAATAGGGTA-AAGATACACTTTTCTCCCTCA
76830 AAATAGGGTAAAGATACACTTTTCTCCCTCA
1 AAATAGGGTAAAGATACACTTTTCTCCCTCA
76861 AAATAGGGTAAAGATACACTTTT
1 AAATAGGGTAAAGATACACTTTT
76884 GAATCAAAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
30 2 0.03
31 70 0.95
32 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (31 bp):
AAATAGGGTAAAGATACACTTTTCTCCCTCA
Left flanking sequence: Indices 76268 -- 76767
CAGTCATAGTACAGGGCCAGGGGTTCCAATTCATCTGGAGTGGAGAGTCTCAGTAAATGAATTAG
CTGCAGCAGCGGCCGACAGGCGAAGGAAATGGAATTGTGAAACCGAGTTGGAGAGGTGAAGGGGA
AGAGAAAGAATTAATCTTGAGTTGAGTCTTGAAAAGCAGCTAAGGTTCAGGATCAAGATCAGTTA
AAGAATGACTCTTGAGGATTTACTGACAGTTCACTCTCATTGATTCTTCGATAGTCTTTCCTGAC
AGTGAACGATGACGAATCTTGAGTCTTTCGTCTTGACTGACTGTTTCGTCTTTCCTTCCAGTTCA
CTCTCATTCATCGATAGTGTCGTCTCCCTTCTCTTTCCCTTCTTTCTTGAACTGTAAAGTCTAAT
TAAATTCTTCTTTCGTTTCGTCTTGACTGACTGTTGAGTCGAATTCATCTTGTTTTCGCTTTCGT
CTTTCCTTCCAGTTCACTCTCAGTCATAAATAGTCTTTACTGTTG
Right flanking sequence: Indices 76884 -- 77383
GAATCAAAAAAATCAGGGAGAGATAGAATGAATTTCTTGTTGGTCTTTACAGGAGAATGAATCGG
AAAGGTGCGAAGCTGCTCGCCGAGTTTACCTCCTTCAATAAGGGAAGGGAATAAAGGTGACGGTT
TTCTCTTGAGGATTTACTGACAGTTCACTCTCATGAATAAGGAGTTGAGGATTGACTGACAGTTC
CGGAGAATGCATCTTTCTTCTTTCCTTCCAGTTCACTCTCATTCATCGATAGTCTTTACTGTTCA
GGGAGAGTCAATTCATGCTTTACCTCGTTCAAGAAGCTCGAGACAAATACATGATGACTGACTCT
CTGACTTATTCTTTTCTTTCCTGTAAAGGTTGTTTTCGGTTTCTTCTTCTTTTCTTCCTTTCTTT
CTTTGAAACATCCCCATCCCATTCCAGCGGCAAATCAAGTCAAGGGACCATAGGCGAACAGGGAA
GAGACTTTCCGAACCCGCAGAATCACAGCAACAGTAAGACTGAAC
Found at i:90344 original size:32 final size:32
Alignment explanation
Indices: 90303--90367 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
90293 GTCAGGGACA
90303 GCTTGTTTGCCTTTCTTCTTTCTTTTCCGTAC
1 GCTTGTTTGCCTTTCTTCTTTCTTTTCCGTAC
90335 GCTTGTTTGCCTTTCTTCTTTCTTTTCCGTAC
1 GCTTGTTTGCCTTTCTTCTTTCTTTTCCGTAC
90367 G
1 G
90368 TTAGGGTCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.03, C:0.28, G:0.14, T:0.55
Consensus pattern (32 bp):
GCTTGTTTGCCTTTCTTCTTTCTTTTCCGTAC
Left flanking sequence: Indices 89803 -- 90302
TGATAAAGGGTAGTAGGTGTAGGTCTTTCCAGCCTCATTAATGCAATGGAACTCAATCACTTTCA
GAACTGGCCTTGGAAGGAAATCTTTATTCAAATCATATAATCTTTCAGAAGCTGGCATCGCTAGT
GGACTCCTCCTCGTCGACAGCCAGCAGTTGCCGGACGGGACTTCCTTGCCTTCAGCCTAGCCGCC
TTGCCCGCCCTTTCGGACTACCTTACTGACGGGCTTGCTTTCCTGCCTTCGGCCTGAAGACGGTA
TGCTCTAGTTGCTGCTGGCAGCTCTTAGCTGAATGCCTTGCTTCGCCCTACAGCTAGTGGAGACA
CCGACTAATAAGATTGACGAGAGGAGAACACATGTCGTGGTCGAGACAAATGATGATTGTCTTAC
TCATCCTTCTCTTCTTTCTAGGCCTGGACTAATGCTTCCTTATGTCCGCCATTAGCTTAAGGCTA
GTGTAACGGAGGGCTTCCTCGCAAGAAGCTTTATAGTCAGGGACA
Right flanking sequence: Indices 90368 -- 90867
TTAGGGTCGTTCGGGCGTAAAACCGAGTTGCATACTGGGCTGGGTGAAGCTTAGTCCTTCGGACC
TTTCAATCTCGCAACTTTAGTAGCTAGGCGCTCGCACGCTTTAAGGGCAGTTTCAGGTATTGCAC
TAAGAAAGACTCCTGCCGTTGCTAAAGGTCAGATTTTCACTCAATTTCTTTCAAATTGAAAAAGA
AGAGGAGCAAGCAAGATCAGGCTTTTCAGGCGTATCGCGCAGGAGCTCGAAAGCTGCGAAAAAAG
TAGAGCTGTGAAATCGCTGTGGTGAGGTATTGGATTGGAAGTGTTCAACGAATCGAGAGAAAGAC
AAAAGAAAAGAAAAGAGCACCGTGCTATACTGGCAGAGCTTCTGCAAAACGAGGTAGGTATAGGT
AGCTTTCGCTAATGAGAGATGGGTTTGGGGATTAGGTCTCCTAATTCATGGAATTAGTTTGATCT
TTATTAGTTTCTTTTTAAAGCTGCATTCTCCGGAACAGGAAGGAA
Found at i:91188 original size:70 final size:70
Alignment explanation
Indices: 90972--91164 Score: 271
Period size: 70 Copynumber: 2.8 Consensus size: 70
90962 ATAAAACCTT
* * * * * ** *
90972 TTCTATCTAGCATAGGGGTCAAAGTTCATAA-TCGCTTTTTCCCTAAGGAAAGCATCAAAAAGAA
1 TTCTATCCACCATAGGGGTCAAAGTTCGTAAGAC-CTTTTTCACTAACAAAAGCAGCAAAAAGAA
91036 AAGAAA
65 AAGAAA
* **
91042 TTCTATCCACCATAGGGGTCAAAGTTCGTAAGACCTTTTTCACTAATAGCAGCAGCAAAAAGAAA
1 TTCTATCCACCATAGGGGTCAAAGTTCGTAAGACCTTTTTCACTAACAAAAGCAGCAAAAAGAAA
91107 AGAAA
66 AGAAA
91112 TTCTATCCACCATAGGGGTCAAAGTTCGTAAGACCTTTTTCACTAACAAAAGC
1 TTCTATCCACCATAGGGGTCAAAGTTCGTAAGACCTTTTTCACTAACAAAAGC
91165 TACTGAAAGA
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
70 108 0.99
71 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (70 bp):
TTCTATCCACCATAGGGGTCAAAGTTCGTAAGACCTTTTTCACTAACAAAAGCAGCAAAAAGAAA
AGAAA
Left flanking sequence: Indices 90472 -- 90971
TTTAAGGGCAGTTTCAGGTATTGCACTAAGAAAGACTCCTGCCGTTGCTAAAGGTCAGATTTTCA
CTCAATTTCTTTCAAATTGAAAAAGAAGAGGAGCAAGCAAGATCAGGCTTTTCAGGCGTATCGCG
CAGGAGCTCGAAAGCTGCGAAAAAAGTAGAGCTGTGAAATCGCTGTGGTGAGGTATTGGATTGGA
AGTGTTCAACGAATCGAGAGAAAGACAAAAGAAAAGAAAAGAGCACCGTGCTATACTGGCAGAGC
TTCTGCAAAACGAGGTAGGTATAGGTAGCTTTCGCTAATGAGAGATGGGTTTGGGGATTAGGTCT
CCTAATTCATGGAATTAGTTTGATCTTTATTAGTTTCTTTTTAAAGCTGCATTCTCCGGAACAGG
AAGGAAAGACGAAAGAAGAATCAATGAGAGTGAACTGTCAGTAAATCCTCAAGAGTCATTCTTTA
ACTGATCTTTCTCCTTCACCTTAGCAGCAGCGTCAATAAAACCTT
Right flanking sequence: Indices 91165 -- 91664
TACTGAAAGAAAAATCATTCTATCTTTCCCGTATTTTAGGGTATAAAAGTCTATCTTGACCCTGA
TTTCCCTCGGGAACTCTCCTGTAAACACTCAAAAAACAAGAAAGATCCTATCCTCCCCCCTATTT
TGAGGGATCAAAGTCTATCTTTCCCCTATTTTTCGGGATAAAATGGATGCTTTACCCTATTTTTG
GGGATAAAAAGCTATCCTCCCCCGTATTTTGAGGGATCAAACTCTATCTCTCCCTTATTTTTAGG
GATCAAATCTAGTCAAGGTAATTCAACAGTCAATCCTCAAGATGAATGAAACTGTAAACACGACT
TATTCATTCATGATCGTGAACTGGAAGTAAAGACTATCGAAGAATTAGACTGAACTCAATCACTT
TCGGAACTGTAACCAAAGACTATCGATTAATGAGAGTTTACGGTTGTAGAACTGAACTCATGAAC
CTGAACTGATATTCCCTATTTCTTCTTTCAGGAGGTAAATAGGCT
Found at i:91321 original size:31 final size:31
Alignment explanation
Indices: 91286--91435 Score: 119
Period size: 31 Copynumber: 4.8 Consensus size: 31
91276 CCTATCCTCC
91286 CCCCTATTTTGAGGGATCAAAGTCTATCTTT
1 CCCCTATTTTGAGGGATCAAAGTCTATCTTT
** * **
91317 CCCCTATTTTTCGGGAT-AAAATGGATGCTTT
1 CCCCTATTTTGAGGGATCAAAGTCTAT-CTTT
* * * *
91348 ACCCTATTTTTG-GGGATAAAAAG-CTATCCTC
1 CCCCTA-TTTTGAGGGAT-CAAAGTCTATCTTT
* *
91379 CCCCGTATTTTGAGGGATCAAACTCTATCTCT
1 CCCC-TATTTTGAGGGATCAAAGTCTATCTTT
* *
91411 CCCTTATTTTTAGGGATCAAA-TCTA
1 CCCCTATTTTGAGGGATCAAAGTCTA
91436 GTCAAGGTAA
Statistics
Matches: 92, Mismatches: 20, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
30 10 0.11
31 58 0.63
32 21 0.23
33 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (31 bp):
CCCCTATTTTGAGGGATCAAAGTCTATCTTT
Left flanking sequence: Indices 90786 -- 91285
GGATTAGGTCTCCTAATTCATGGAATTAGTTTGATCTTTATTAGTTTCTTTTTAAAGCTGCATTC
TCCGGAACAGGAAGGAAAGACGAAAGAAGAATCAATGAGAGTGAACTGTCAGTAAATCCTCAAGA
GTCATTCTTTAACTGATCTTTCTCCTTCACCTTAGCAGCAGCGTCAATAAAACCTTTTCTATCTA
GCATAGGGGTCAAAGTTCATAATCGCTTTTTCCCTAAGGAAAGCATCAAAAAGAAAAGAAATTCT
ATCCACCATAGGGGTCAAAGTTCGTAAGACCTTTTTCACTAATAGCAGCAGCAAAAAGAAAAGAA
ATTCTATCCACCATAGGGGTCAAAGTTCGTAAGACCTTTTTCACTAACAAAAGCTACTGAAAGAA
AAATCATTCTATCTTTCCCGTATTTTAGGGTATAAAAGTCTATCTTGACCCTGATTTCCCTCGGG
AACTCTCCTGTAAACACTCAAAAAACAAGAAAGATCCTATCCTCC
Right flanking sequence: Indices 91436 -- 91935
GTCAAGGTAATTCAACAGTCAATCCTCAAGATGAATGAAACTGTAAACACGACTTATTCATTCAT
GATCGTGAACTGGAAGTAAAGACTATCGAAGAATTAGACTGAACTCAATCACTTTCGGAACTGTA
ACCAAAGACTATCGATTAATGAGAGTTTACGGTTGTAGAACTGAACTCATGAACCTGAACTGATA
TTCCCTATTTCTTCTTTCAGGAGGTAAATAGGCTGAACTCCGGAACCTTTGACGATATTACCTGA
CCTACACCTCTACAACTATCTCTCTCCTTCGGCTCTATTCCTATTTCTTCTTTCTCCTTCACCTG
ATTGAAAAACTGTAAACAAGGCATGAAGGATGGAAGAGACTGATTTCACTCTTTCACAAGGTAAA
TAAATAGGGTTAAGGAAGAAAAGAAGAAGAAGAAAGATTCATTCGACTCAACCTCAAACCTTTGA
CGGATTGAACTCGGTAAAGCATATGAAGTAGCTCTTTTCTCCTCT
Found at i:97837 original size:34 final size:35
Alignment explanation
Indices: 97781--97883 Score: 100
Period size: 38 Copynumber: 2.9 Consensus size: 35
97771 CTTATGAATG
** *
97781 AGAGTTAACTGGAAGTCAATCCTCAAGATTC-GTC
1 AGAGTTAACTGTCAGTCAATCCTCAAGATTCAATC
** * * *
97815 ATCGTTCACTGTCAGTCAATCCTATCGAAGAATCAATG
1 AGAGTTAACTGTCAGTCAATCC--TC-AAGATTCAATC
97853 AGAGTTAACTGTCAGTCAATCCTCAAGATTC
1 AGAGTTAACTGTCAGTCAATCCTCAAGATTC
97884 CTTCAAACAC
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
34 17 0.32
35 6 0.11
36 4 0.08
37 6 0.11
38 20 0.38
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (35 bp):
AGAGTTAACTGTCAGTCAATCCTCAAGATTCAATC
Left flanking sequence: Indices 97281 -- 97780
GAACCGTAACCTGATGGAACTGATCTTTCTCCTCTGCCTACTGACTCATTCAGCTTTTCCTCTCT
TCCCTGACCTGCCTGCCCCTGACCCGATATTCTCCCTTGCTTGCCTGATTTCTGGAGGTCAAGCT
ATTTGAGTGAGGAACCTTTACAGTCGAGTAAAGAAAAGAAAAAGAGAAAGCCGAAACCGACACCC
TTTTCCTTCTTTCACTCTAAACTAAGCCGAAACGAAAGAGTCATTCTCAATCACCTCTACAACTC
GGTTGAACAATTCCTTCACCTCCTCCGTCGGTTTCACAGCTTCGCTCCATTGCCTGCCCCTATAT
ATTATTTATTCTGTAACAGTAAGGGAAACTCCTTAACTACTGAACCCGAGCCTATGTTATATTCT
TACACTGCGCAGCTAATGAATTCACTCTTTCACTGTAAACTCATTCACCTATCGGTTGAACAGCT
TCGCACCTTTCCGATTCATTCTCCTGTAAACACTCCTTATGAATG
Right flanking sequence: Indices 97884 -- 98383
CTTCAAACACTCTTTCACTCGGTCTCGCGGTTTCCCCCCTCAGCCCCCTATCACAACAAGGCAGA
GCTAACCCAACTACTGTTCTCTAAAAGGCCTGCCTATTCTATTTCTATTATAGTCAAGCTTGGAG
AACAAACATAGTACTAGGGCTTACTAGATGAACATGATTGGTGAAGGGGGCCGCCTTAGGTAGCT
GCTATCTATCGTATCTTTTCTAATAAGTTAAGTTAGGTAGGTGGTTGAGTCGAAGCGTAGAAGGA
GACTAAGTCATCGGTCGTGCCGGGATTGATTTCCTACTTCCAGCTGAATGAGGCTTTTTTACGTC
AACCCTGCCTGCTGGAAGTGCCTCGGAGATTGCCTGGTCTTTCGTTCGCTATTCGAATTCTGGAC
CAGTAGAAATGTACGAAAGGTGGTCTTTCTTTTTCTTGTCCTTTTCTTTCTAGTAGCTAGTAGCT
TCGTCGTTGGTCTCTCCTCTTCCCGGTTCCCGGCCGGCTGTGACT
Found at i:117281 original size:99 final size:99
Alignment explanation
Indices: 117175--117383 Score: 328
Period size: 99 Copynumber: 2.1 Consensus size: 99
117165 AATGAATAAG
**
117175 GAGTGTTTACTGTTGAATGAATCGAGAGTTGAGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGG
1 GAGTGTTTACTGGAGAATGAATCGAGAGTTGAGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGG
117240 ATTGACTGACAGTTCACTCTCATTGATTCTTCGA
66 ATTGACTGACAGTTCACTCTCATTGATTCTTCGA
* * **
117274 GAGTGTTTACAGGAGAATGAATCTAGAGTTTCGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGG
1 GAGTGTTTACTGGAGAATGAATCGAGAGTTGAGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGG
** **
117339 ATTGACTTCCAGTTCACTCTCATTTCTTCTTCGA
66 ATTGACTGACAGTTCACTCTCATTGATTCTTCGA
117373 GAGTGTTTACT
1 GAGTGTTTACT
117384 CTTTCATTCA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 99 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (99 bp):
GAGTGTTTACTGGAGAATGAATCGAGAGTTGAGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGG
ATTGACTGACAGTTCACTCTCATTGATTCTTCGA
Left flanking sequence: Indices 116675 -- 117174
AATAGTTCAACCCTTGTTTACGGGAGAAGTTCAGGATAAAAAACCAAAGCTAAGGAAAGGAGCGA
GAAGCCACTTTACAGTCTTTGTTGAATAAAGAAAGAGGATCAGAAAGAGAAAGAATGAATCGTCA
GTCTTGACTTGTTTACCTTGTGAAAGAATAGTGAAGGAGCCAGAGTGAAGTTCGTTCAGTAGTTG
TTCAGTCAGGAGTTTACCGAGTTCAATCATCTGGTGAAGGATCAGAGAAAGAGAAAGAAGGAATC
GAGAGGAGAAGATCAAGATCAAGAAGGAATCTTGAGTCTTTCCTGACAGTTCACTCTCATTGATT
CTTCGATAGTCTTTCCTGACAGTGAACGATGACGAATAAGTCGTGTTTACAGTCGAGTAAAAGAG
TGAAAGAAGTAATAGTCCTGTTCTCTCTCATGAATAAGGAGTGTTTACAGGATCATGAATCGAAA
GATCAAGAATGAATAAGGATAGGTTGGTTGAGTCGAATGAATAAG
Right flanking sequence: Indices 117384 -- 117883
CTTTCATTCAGAGAGAGTTTCGGAGAAGAGAAAGAAGGAATCTTTCGTCGAGAGTTTCGGATCAG
ATCAAGAAGGAATCTTGAGGATTGCCTGAGAGTTCACTCTCATTGATTCTTCTTTCGTCTTTCCT
TCCAGTTCACTCTCATTGATTCTTCTTTCGTCTTTCCTTCCAGTTCTGTCTCATTCATCTTCCCT
TCTTCTTCTCTTCTTCTTTCATTCTCTAAACAAGGTAAAGCGTCTTCCTTCTTCCTTCTCATAAC
TCACAATAACTGGACAAGGAGTTAAGTCGAATTCATGCATCTTTCATTCTCGTCAGGGAATAGGG
GCAAAGGTAATTAATCGGAAAGGGGCGAAGCTGATAGTTTACGAGGTTCAGGATTGAATGAATAG
GAAGAGAATAAAGAGCAGTTCCAGAATAAGTAGGTTCAGGAGAAAGACTACTCTTTCCTTGTCAA
CTTCAGGTGCTATAAAAAAACTAACTAAAACAAATAGGAATGGAA
Found at i:117401 original size:99 final size:99
Alignment explanation
Indices: 117189--117418 Score: 289
Period size: 99 Copynumber: 2.3 Consensus size: 99
117179 GTTTACTGTT
** **
117189 GAATGAATCGAGAGTTGAGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGGATTGACTGACAGTT
1 GAATGAAGAGAGAGTTTCGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGGATTGACTGACAGTT
*
117254 CACTCTCATTGATTCTTCGAGAGTGTTTACAGGA
66 CACTCTCATTGATTCTTCGAGAGTGTTTACACGA
*** **
117288 GAATGAATCTAGAGTTTCGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGGATTGACTTCCAGTT
1 GAATGAAGAGAGAGTTTCGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGGATTGACTGACAGTT
** * **
117353 CACTCTCATTTCTTCTTCGAGAGTGTTTACTCTT
66 CACTCTCATTGATTCTTCGAGAGTGTTTACACGA
** **
117387 TCATTCAGAGAGAGTTTCGGAGAAGAGAAAGA
1 GAATGAAGAGAGAGTTTCGGAGAAGAGAAAGA
117419 AGGAATCTTT
Statistics
Matches: 113, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
99 113 1.00
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (99 bp):
GAATGAAGAGAGAGTTTCGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGGATTGACTGACAGTT
CACTCTCATTGATTCTTCGAGAGTGTTTACACGA
Left flanking sequence: Indices 116689 -- 117188
TGTTTACGGGAGAAGTTCAGGATAAAAAACCAAAGCTAAGGAAAGGAGCGAGAAGCCACTTTACA
GTCTTTGTTGAATAAAGAAAGAGGATCAGAAAGAGAAAGAATGAATCGTCAGTCTTGACTTGTTT
ACCTTGTGAAAGAATAGTGAAGGAGCCAGAGTGAAGTTCGTTCAGTAGTTGTTCAGTCAGGAGTT
TACCGAGTTCAATCATCTGGTGAAGGATCAGAGAAAGAGAAAGAAGGAATCGAGAGGAGAAGATC
AAGATCAAGAAGGAATCTTGAGTCTTTCCTGACAGTTCACTCTCATTGATTCTTCGATAGTCTTT
CCTGACAGTGAACGATGACGAATAAGTCGTGTTTACAGTCGAGTAAAAGAGTGAAAGAAGTAATA
GTCCTGTTCTCTCTCATGAATAAGGAGTGTTTACAGGATCATGAATCGAAAGATCAAGAATGAAT
AAGGATAGGTTGGTTGAGTCGAATGAATAAGGAGTGTTTACTGTT
Right flanking sequence: Indices 117419 -- 117918
AGGAATCTTTCGTCGAGAGTTTCGGATCAGATCAAGAAGGAATCTTGAGGATTGCCTGAGAGTTC
ACTCTCATTGATTCTTCTTTCGTCTTTCCTTCCAGTTCACTCTCATTGATTCTTCTTTCGTCTTT
CCTTCCAGTTCTGTCTCATTCATCTTCCCTTCTTCTTCTCTTCTTCTTTCATTCTCTAAACAAGG
TAAAGCGTCTTCCTTCTTCCTTCTCATAACTCACAATAACTGGACAAGGAGTTAAGTCGAATTCA
TGCATCTTTCATTCTCGTCAGGGAATAGGGGCAAAGGTAATTAATCGGAAAGGGGCGAAGCTGAT
AGTTTACGAGGTTCAGGATTGAATGAATAGGAAGAGAATAAAGAGCAGTTCCAGAATAAGTAGGT
TCAGGAGAAAGACTACTCTTTCCTTGTCAACTTCAGGTGCTATAAAAAAACTAACTAAAACAAAT
AGGAATGGAATTTAGGGCCAGATCCAGTATCGCTGAACAGCTAAT
Found at i:117530 original size:38 final size:38
Alignment explanation
Indices: 117479--117568 Score: 162
Period size: 38 Copynumber: 2.4 Consensus size: 38
117469 ATTGCCTGAG
117479 AGTTCACTCTCATTGATTCTTCTTTCGTCTTTCCTTCC
1 AGTTCACTCTCATTGATTCTTCTTTCGTCTTTCCTTCC
117517 AGTTCACTCTCATTGATTCTTCTTTCGTCTTTCCTTCC
1 AGTTCACTCTCATTGATTCTTCTTTCGTCTTTCCTTCC
**
117555 AGTTCTGTCTCATT
1 AGTTCACTCTCATT
117569 CATCTTCCCT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.11, C:0.30, G:0.09, T:0.50
Consensus pattern (38 bp):
AGTTCACTCTCATTGATTCTTCTTTCGTCTTTCCTTCC
Left flanking sequence: Indices 116979 -- 117478
GACAGTTCACTCTCATTGATTCTTCGATAGTCTTTCCTGACAGTGAACGATGACGAATAAGTCGT
GTTTACAGTCGAGTAAAAGAGTGAAAGAAGTAATAGTCCTGTTCTCTCTCATGAATAAGGAGTGT
TTACAGGATCATGAATCGAAAGATCAAGAATGAATAAGGATAGGTTGGTTGAGTCGAATGAATAA
GGAGTGTTTACTGTTGAATGAATCGAGAGTTGAGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAG
GATTGACTGACAGTTCACTCTCATTGATTCTTCGAGAGTGTTTACAGGAGAATGAATCTAGAGTT
TCGGAGAAGAGAAAGAGAAAGAAGGAAGAATGAGGATTGACTTCCAGTTCACTCTCATTTCTTCT
TCGAGAGTGTTTACTCTTTCATTCAGAGAGAGTTTCGGAGAAGAGAAAGAAGGAATCTTTCGTCG
AGAGTTTCGGATCAGATCAAGAAGGAATCTTGAGGATTGCCTGAG
Right flanking sequence: Indices 117569 -- 118068
CATCTTCCCTTCTTCTTCTCTTCTTCTTTCATTCTCTAAACAAGGTAAAGCGTCTTCCTTCTTCC
TTCTCATAACTCACAATAACTGGACAAGGAGTTAAGTCGAATTCATGCATCTTTCATTCTCGTCA
GGGAATAGGGGCAAAGGTAATTAATCGGAAAGGGGCGAAGCTGATAGTTTACGAGGTTCAGGATT
GAATGAATAGGAAGAGAATAAAGAGCAGTTCCAGAATAAGTAGGTTCAGGAGAAAGACTACTCTT
TCCTTGTCAACTTCAGGTGCTATAAAAAAACTAACTAAAACAAATAGGAATGGAATTTAGGGCCA
GATCCAGTATCGCTGAACAGCTAATAAAGTCAACAGTAGCGGTAGGTTCTCCAACTCTATAAAGG
CAAGAGTAGCGGTAGGTTCTCCAACTCTATAAAGAAGCTGTACCGAGAAAGAGTTCTCTCCGCAA
ATTGAAAATAAATGGGCACAAAGCCAGTCGTTATTCTGGAACCTT
Found at i:117967 original size:35 final size:35
Alignment explanation
Indices: 117917--117992 Score: 134
Period size: 35 Copynumber: 2.2 Consensus size: 35
117907 TGAACAGCTA
*
117917 ATAAAGTCAACAGTAGCGGTAGGTTCTCCAACTCT
1 ATAAAGGCAACAGTAGCGGTAGGTTCTCCAACTCT
*
117952 ATAAAGGCAAGAGTAGCGGTAGGTTCTCCAACTCT
1 ATAAAGGCAACAGTAGCGGTAGGTTCTCCAACTCT
117987 ATAAAG
1 ATAAAG
117993 AAGCTGTACC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (35 bp):
ATAAAGGCAACAGTAGCGGTAGGTTCTCCAACTCT
Left flanking sequence: Indices 117417 -- 117916
GAAGGAATCTTTCGTCGAGAGTTTCGGATCAGATCAAGAAGGAATCTTGAGGATTGCCTGAGAGT
TCACTCTCATTGATTCTTCTTTCGTCTTTCCTTCCAGTTCACTCTCATTGATTCTTCTTTCGTCT
TTCCTTCCAGTTCTGTCTCATTCATCTTCCCTTCTTCTTCTCTTCTTCTTTCATTCTCTAAACAA
GGTAAAGCGTCTTCCTTCTTCCTTCTCATAACTCACAATAACTGGACAAGGAGTTAAGTCGAATT
CATGCATCTTTCATTCTCGTCAGGGAATAGGGGCAAAGGTAATTAATCGGAAAGGGGCGAAGCTG
ATAGTTTACGAGGTTCAGGATTGAATGAATAGGAAGAGAATAAAGAGCAGTTCCAGAATAAGTAG
GTTCAGGAGAAAGACTACTCTTTCCTTGTCAACTTCAGGTGCTATAAAAAAACTAACTAAAACAA
ATAGGAATGGAATTTAGGGCCAGATCCAGTATCGCTGAACAGCTA
Right flanking sequence: Indices 117993 -- 118492
AAGCTGTACCGAGAAAGAGTTCTCTCCGCAAATTGAAAATAAATGGGCACAAAGCCAGTCGTTAT
TCTGGAACCTTAGCCCGAGCATCTTGTTATCATATCTTCGAGACTTGCTGGTCCGCTCTGTTAGG
AGAACAAGTCCTCCCGTAAGAAGACTTTCTTTCTTTCGCAGGGCTCGTTATATATAGCCTTATAA
CGAACGTAACGCGTTTAATGGACCTCTCCCCTTCCCTTGGTCCTCATAAAACGACAAGTATGATA
GACAATCAATTTCCTTCCTTCTAGCTTTGAAAAGAGATCCAAAGACACAACATTGATTTATAAAG
GACCTCCCCTCGGCTCCGGGCTAAGGCATTATCTTCATCTTTGAAGTCTAGTCCCATCGGCCATG
CTTTCTTTGTAGATGCCTCCTTAGAGAAATTCCCCTAGTCGCCCCGCAGGGAACCCATAAGAAGA
TCCCTACTATATGTATCAATAGATAATATATATCCCAATCTATAA
Found at i:126295 original size:29 final size:29
Alignment explanation
Indices: 126269--126334 Score: 132
Period size: 29 Copynumber: 2.3 Consensus size: 29
126259 TTCACTGCGG
126269 AGCTCCTTTCCCTGTCGGTAAAGCTGCAA
1 AGCTCCTTTCCCTGTCGGTAAAGCTGCAA
126298 AGCTCCTTTCCCTGTCGGTAAAGCTGCAA
1 AGCTCCTTTCCCTGTCGGTAAAGCTGCAA
126327 AGCTCCTT
1 AGCTCCTT
126335 CACCTCTCCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.29
Consensus pattern (29 bp):
AGCTCCTTTCCCTGTCGGTAAAGCTGCAA
Left flanking sequence: Indices 125769 -- 126268
TCAAGCTAGATCCACAAAGAAAAGAGATGGCTGCATCTAAGGGCTTATTATCTTACTTCTTATAA
AGCCGGAGAGAGCGAACAATCTGATGATATATACTTGTTATGTCAGAAAAAAGTTCCGAAGAGTG
GAGGCTCCTCTCCTTTACAGTCTCGCTCCGGAACAGGAACAAAGAAAGAAGGGAGGAAGTGTTTC
AAGGAAAGACTAACGATGAATTATAACTACTTGTTCCGTTATTGTTCGTGATTCTTGAACAGTAC
ACTCGGTCTCTTCTCTTTCTCCTTATTCTCTTCCTATGAAATCCTTCTGGAACTGTAACCTCCTT
CCCCTGTTGTCCGAGCATATGAAATCCTATCCCTTCTTGAACGATGAATGAGAGTGAACTGGAAG
GAAAGACTCAACCTCAAACCAGGACACTATAAACAGGAGGTAAAGCAGCTGGATGAGAACCTTCT
TGAACAGCTCAAGATCCTTCACCTCCCCTGTCGGTTTCACTGCGG
Right flanking sequence: Indices 126335 -- 126834
CACCTCTCCCTATTCCCGGACCGGATTGAAGGAGTTAGCAGCAAAATAGCTTTACAGTCTGGAGA
GTAAGTACAGAAAAGAGATAGTGAAACCTGCCCCGATATTATTCCCTTTACTACTGAACCTGAAC
CTTCTGAACTGTAAACACTCTTTATTCATGAGACAGAACTACTTTACCTTCTTGAACCTATTTAC
CCCGTACGTCAAATCAGGGAGAGGAAGAAAGATTAATGAGACAGAACTACTGAACCTGAACCTCT
CTCTATATTATCTTCAGTGATTGTGAGTTATTCTATCACAGTAAACAAAGCAGCTTCTTTCTCTC
CTGAACCAGATGGAAGAATAAACAAAGACTCAACTCAAGATTAATTAGCCTTGACAGGAGCATAG
AGTCAATTCATTAGCAGCTTTACAAGAGAAGAGAATAAATTCAGGGAGAAGAAACACACACTCAT
CATCATATTATTCTTTCCAGTTCAAGCAAGAAGGGATATGAAATT
Found at i:131553 original size:69 final size:69
Alignment explanation
Indices: 131475--131743 Score: 324
Period size: 69 Copynumber: 3.9 Consensus size: 69
131465 CTTGTCATAG
*
131475 CTTTTTCCCTTAATAGCTGAAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
1 CTTTTTCCCTTAATAGCTGCAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
131540 TGCA
66 TGCA
* ** **
131544 CTTTTTCCCTTAA-GGAAAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTA
1 CTTTTTCCCTTAATAG-CTGCAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTA
* *
131608 TTTCT
65 TTGCA
* * *****
131613 CTTTTTCCCTTAATAGCGGGAGCTGAAAGAAATTCTTTTCTATCTTTCCCGTATTTTAGGGGTAT
1 CTTTTTCCCTTAATAGCTGCAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
131678 TGCA
66 TGCA
* * ** ** *
131682 CTTTTTCCCTTAATAGCTTCGGCTTCAAGTTAAGAAATTCTATCTTTCCCGTATTTTTGGGG
1 CTTTTTCCCTTAATAGCTGCAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGG
131744 ATCAAATCGA
Statistics
Matches: 163, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
68 1 0.01
69 161 0.99
70 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (69 bp):
CTTTTTCCCTTAATAGCTGCAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
TGCA
Left flanking sequence: Indices 130975 -- 131474
CAAGCAAGACGAAAGAAGAATGAGTACAGAACTCCGGAACCTTCTTAAACTGCTGAACTCCTCCC
TCTATTTATTCTGTCATTTCACTCTTGAATTGAACCTGGAAGGAAAGACTCAAGGAAAGACGAAA
CGAAACATTCGTTATCCTGTAAACACTCCTTATGAATGAGACTCAACCAACCTATCCTTTCTTTA
CCTTTACAGTGATAGAAAGAAGGGAAAGAGAAGGGAGACTCTGAATGAATGAGAGTGAACTGGAA
GTCAATCCTCAAGAGTCATTCTTTAACTTCTCTTTCTCCTTCACCTTAGCAGCAGCTTCAATCAA
ATCTTTTGTATCTCCATATAACTGTAAAAGTTCGTCAGAGGTTTTTCCCTAATAGCTGCATAGGA
AAGAAAAGATTTTGTATCCACGGGTAAAACATTAAAAGACCTTTTTCCCTAAGGAAAGCATAGGA
AATCAAATAAATTCTATCCAGCATAGGGGTCAAACCTTGTCATAG
Right flanking sequence: Indices 131744 -- 132243
ATCAAATCGATGCTTTACCCTATTTTGGGGGATCAAATCGATGCTTTACCCTATTTTTGGGGATC
AAAGTCTATCCTCTGTCTATTTTTTGGGATAAAAGAGATGCTTTACCCTATTTTTGGGGCTAAAA
GTGTATCTCTCCCTTATTTTTTTGATTAAAAAGTCTATCTTTACCCTATTTTTGGGGATAAAAGA
GAGTCAAGGTAATTCATTCATTATTAAGGAAAGACGAAACGAAACTCAACATGAGAGTGAACTGT
CAGTAAATCCTCAAGATTCATTCTATCTTTACCCTATTGAAACAGGAAAGACGAAAGAAGAATCA
ATGAGAGTGAACTGTCAGTAAATCCTCAAGATTCCTTCTTTCTCTTTCTCTGATCCTCAAGATTC
ATTCGAGTTCACTGTCAGTAAATCCTCAAGAGAAACCCTCTCCTCTTCTCCTCGAGCAACTTGAC
TTATCTACCCGGATCTTACAGAAATCAGTCCCCCCTGGAACTAGA
Found at i:131637 original size:138 final size:138
Alignment explanation
Indices: 131475--131743 Score: 387
Period size: 138 Copynumber: 1.9 Consensus size: 138
131465 CTTGTCATAG
*
131475 CTTTTTCCCTTAATAGCTGAAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
1 CTTTTTCCCTTAATAGCGGAAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
131540 TGCACTTTTTCCCTTAAG-GAAAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGG
66 TGCACTTTTTCCCTTAAGAG-AAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGG
131604 GGTATTTCT
130 GGTATTTCT
* *****
131613 CTTTTTCCCTTAATAGCGGGAGCTGAAAGAAATTCTTTTCTATCTTTCCCGTATTTTAGGGGTAT
1 CTTTTTCCCTTAATAGCGGAAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
* *** * ** *
131678 TGCACTTTTTCCCTTAATAGCTTCGGCTTCAAGTTAAGAAATTCTATCTTTCCCGTATTTTTGGG
66 TGCACTTTTTCCCTTAAGAGAAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGG
131743 G
131 G
131744 ATCAAATCGA
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
138 114 0.99
139 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (138 bp):
CTTTTTCCCTTAATAGCGGAAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTAT
TGCACTTTTTCCCTTAAGAGAAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGG
GTATTTCT
Left flanking sequence: Indices 130975 -- 131474
CAAGCAAGACGAAAGAAGAATGAGTACAGAACTCCGGAACCTTCTTAAACTGCTGAACTCCTCCC
TCTATTTATTCTGTCATTTCACTCTTGAATTGAACCTGGAAGGAAAGACTCAAGGAAAGACGAAA
CGAAACATTCGTTATCCTGTAAACACTCCTTATGAATGAGACTCAACCAACCTATCCTTTCTTTA
CCTTTACAGTGATAGAAAGAAGGGAAAGAGAAGGGAGACTCTGAATGAATGAGAGTGAACTGGAA
GTCAATCCTCAAGAGTCATTCTTTAACTTCTCTTTCTCCTTCACCTTAGCAGCAGCTTCAATCAA
ATCTTTTGTATCTCCATATAACTGTAAAAGTTCGTCAGAGGTTTTTCCCTAATAGCTGCATAGGA
AAGAAAAGATTTTGTATCCACGGGTAAAACATTAAAAGACCTTTTTCCCTAAGGAAAGCATAGGA
AATCAAATAAATTCTATCCAGCATAGGGGTCAAACCTTGTCATAG
Right flanking sequence: Indices 131744 -- 132243
ATCAAATCGATGCTTTACCCTATTTTGGGGGATCAAATCGATGCTTTACCCTATTTTTGGGGATC
AAAGTCTATCCTCTGTCTATTTTTTGGGATAAAAGAGATGCTTTACCCTATTTTTGGGGCTAAAA
GTGTATCTCTCCCTTATTTTTTTGATTAAAAAGTCTATCTTTACCCTATTTTTGGGGATAAAAGA
GAGTCAAGGTAATTCATTCATTATTAAGGAAAGACGAAACGAAACTCAACATGAGAGTGAACTGT
CAGTAAATCCTCAAGATTCATTCTATCTTTACCCTATTGAAACAGGAAAGACGAAAGAAGAATCA
ATGAGAGTGAACTGTCAGTAAATCCTCAAGATTCCTTCTTTCTCTTTCTCTGATCCTCAAGATTC
ATTCGAGTTCACTGTCAGTAAATCCTCAAGAGAAACCCTCTCCTCTTCTCCTCGAGCAACTTGAC
TTATCTACCCGGATCTTACAGAAATCAGTCCCCCCTGGAACTAGA
Found at i:131937 original size:31 final size:32
Alignment explanation
Indices: 131720--131937 Score: 168
Period size: 31 Copynumber: 7.0 Consensus size: 32
131710 GTTAAGAAAT
*
131720 TCTAT-CTTT-CCCGTATTTTTGGGGATCAAA-
1 TCTATGCTTTACCC-TATTTTTGGGGATAAAAG
* * *
131750 TCGATGCTTTACCCTATTTTGGGGGATCAAA-
1 TCTATGCTTTACCCTATTTTTGGGGATAAAAG
* *
131781 TCGATGCTTTACCCTATTTTTGGGGATCAAAG
1 TCTATGCTTTACCCTATTTTTGGGGATAAAAG
* * ** *
131813 TCTATCCTCT-GTCTATTTTTTGGGATAAAAG
1 TCTATGCTTTACCCTATTTTTGGGGATAAAAG
** *
131844 -AGATGCTTTACCCTATTTTTGGGGCTAAAAG
1 TCTATGCTTTACCCTATTTTTGGGGATAAAAG
* * **
131875 TGTAT-CTCT-CCCTTATTTTT-TTGATTAAAAAG
1 TCTATGCTTTACCC-TATTTTTGGGGA-T-AAAAG
131907 TCTAT-CTTTACCCTATTTTTGGGGATAAAAG
1 TCTATGCTTTACCCTATTTTTGGGGATAAAAG
131938 AGAGTCAAGG
Statistics
Matches: 150, Mismatches: 28, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
30 13 0.09
31 100 0.67
32 32 0.21
33 5 0.03
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.41
Consensus pattern (32 bp):
TCTATGCTTTACCCTATTTTTGGGGATAAAAG
Left flanking sequence: Indices 131220 -- 131719
GAGAGTGAACTGGAAGTCAATCCTCAAGAGTCATTCTTTAACTTCTCTTTCTCCTTCACCTTAGC
AGCAGCTTCAATCAAATCTTTTGTATCTCCATATAACTGTAAAAGTTCGTCAGAGGTTTTTCCCT
AATAGCTGCATAGGAAAGAAAAGATTTTGTATCCACGGGTAAAACATTAAAAGACCTTTTTCCCT
AAGGAAAGCATAGGAAATCAAATAAATTCTATCCAGCATAGGGGTCAAACCTTGTCATAGCTTTT
TCCCTTAATAGCTGAAGCTGAAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATTGCAC
TTTTTCCCTTAAGGAAAGCAGCTTCAAGAAAAGAAATTCTATCTTTCCCGTATTTTAGGGGTATT
TCTCTTTTTCCCTTAATAGCGGGAGCTGAAAGAAATTCTTTTCTATCTTTCCCGTATTTTAGGGG
TATTGCACTTTTTCCCTTAATAGCTTCGGCTTCAAGTTAAGAAAT
Right flanking sequence: Indices 131938 -- 132437
AGAGTCAAGGTAATTCATTCATTATTAAGGAAAGACGAAACGAAACTCAACATGAGAGTGAACTG
TCAGTAAATCCTCAAGATTCATTCTATCTTTACCCTATTGAAACAGGAAAGACGAAAGAAGAATC
AATGAGAGTGAACTGTCAGTAAATCCTCAAGATTCCTTCTTTCTCTTTCTCTGATCCTCAAGATT
CATTCGAGTTCACTGTCAGTAAATCCTCAAGAGAAACCCTCTCCTCTTCTCCTCGAGCAACTTGA
CTTATCTACCCGGATCTTACAGAAATCAGTCCCCCCTGGAACTAGATACTTGATGGTGTCAAATC
CTTTCTTTCCTCTTTCTAGCGCTTGAACCAGAATCCCATTTTCTTTCCCCTACCCTTTCTTTCCC
TTTCAGTCAAGCCTTTGTTAGCCCTTTCCTCGAGGAGTCGAGCTGGCTATCTTCTCCTCGAGCCG
CACTAGCCCGGCGATATCGATCTCTACCATTCCTTTATTCAATTC
Found at i:132164 original size:34 final size:32
Alignment explanation
Indices: 132079--132164 Score: 84
Period size: 31 Copynumber: 2.7 Consensus size: 32
132069 ATGAGAGTGA
* *
132079 ACTGTCAGTAAATCCTCAAGATTCCTTCTTTC
1 ACTGTCAGTAAATCCTCAAGATTCATTCGTTC
* * ** *
132111 TCTTTCTCT-GATCCTCAAGATTCATTCGAGTTC
1 ACTGTCAGTAAATCCTCAAGATTCATTC--GTTC
132144 ACTGTCAGTAAATCCTCAAGA
1 ACTGTCAGTAAATCCTCAAGA
132165 GAAACCCTCT
Statistics
Matches: 39, Mismatches: 12, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
31 16 0.41
32 5 0.13
33 8 0.21
34 10 0.26
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.36
Consensus pattern (32 bp):
ACTGTCAGTAAATCCTCAAGATTCATTCGTTC
Left flanking sequence: Indices 131579 -- 132078
AATTCTATCTTTCCCGTATTTTAGGGGTATTTCTCTTTTTCCCTTAATAGCGGGAGCTGAAAGAA
ATTCTTTTCTATCTTTCCCGTATTTTAGGGGTATTGCACTTTTTCCCTTAATAGCTTCGGCTTCA
AGTTAAGAAATTCTATCTTTCCCGTATTTTTGGGGATCAAATCGATGCTTTACCCTATTTTGGGG
GATCAAATCGATGCTTTACCCTATTTTTGGGGATCAAAGTCTATCCTCTGTCTATTTTTTGGGAT
AAAAGAGATGCTTTACCCTATTTTTGGGGCTAAAAGTGTATCTCTCCCTTATTTTTTTGATTAAA
AAGTCTATCTTTACCCTATTTTTGGGGATAAAAGAGAGTCAAGGTAATTCATTCATTATTAAGGA
AAGACGAAACGAAACTCAACATGAGAGTGAACTGTCAGTAAATCCTCAAGATTCATTCTATCTTT
ACCCTATTGAAACAGGAAAGACGAAAGAAGAATCAATGAGAGTGA
Right flanking sequence: Indices 132165 -- 132664
GAAACCCTCTCCTCTTCTCCTCGAGCAACTTGACTTATCTACCCGGATCTTACAGAAATCAGTCC
CCCCTGGAACTAGATACTTGATGGTGTCAAATCCTTTCTTTCCTCTTTCTAGCGCTTGAACCAGA
ATCCCATTTTCTTTCCCCTACCCTTTCTTTCCCTTTCAGTCAAGCCTTTGTTAGCCCTTTCCTCG
AGGAGTCGAGCTGGCTATCTTCTCCTCGAGCCGCACTAGCCCGGCGATATCGATCTCTACCATTC
CTTTATTCAATTCTATTCTAACTTCTAGCTTGGCTTGTCCTTAGCTAAAGAAAGATAGTTGGAGG
CCGAAGACCAGAGTCTGGTTTTCACAAGATATGAAAAAGAGAGTCTTTGTCCTGCTATTCCCGGC
AATAGCTCTTTCGAGGGTTAAAAGAGAGAGAGGATCGGTGCCCGCTCTTTCCCAATCCGAACCAG
GGGAATAGGCCTCTTTCTTACGGGTCGGAAGGCTTCCTTCAGTGA
Found at i:137442 original size:31 final size:31
Alignment explanation
Indices: 137374--137447 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
137364 GTAAATCCGA
**
137374 AAGATTCCTTCTTGATCTTGATCTTCTCCTC
1 AAGATTCCTTCTTGATCTTGATCTGATCCTC
** **
137405 TCGATTCCTTCTTTCTCTTGATCTGATCCTC
1 AAGATTCCTTCTTGATCTTGATCTGATCCTC
*
137436 AAGATTCATTCT
1 AAGATTCCTTCT
137448 ATCTTTACCC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.16, C:0.28, G:0.09, T:0.46
Consensus pattern (31 bp):
AAGATTCCTTCTTGATCTTGATCTGATCCTC
Left flanking sequence: Indices 136874 -- 137373
GCTTTAGTCTCTGTTTGTCATGAATTCATCATTCTCGCAACAACAAGGGATAGTAAAGAAAAGAA
GAAGAATGAGACTGAAGACGAAACGAAAGATTCTCTCCTCTCTTCTTTACAGTGGTTGAATAAAT
TCAGGGACAGGAAAGAAAGATCAGCTACTGAACTGGAAGGAAAGATGAATTAGAGTTTACTCCTA
TACCTCTCCAACAAATGAAAGGATGTTCGCTGCGCTACTGAACCGGAAGGAAAGAAGAAAGCAAG
ACAAGAACAAGATGAATGAGAGTGAACCTCCTATAAACTATCAGCTTCTATTCTATACGGAACCG
GAACCAGATTGAACTCAAAGACAAGGTAATTTGGAAGTCGATACTCCTTTCCTTATCAATGAGAC
TCAACCTTAAACCTTTTCCTGAACCTCTACAACTATCATCAGGTCAAGCTCCGGAACAGGAAGTC
AAGACTATCGAAGAATCAATTCGACTTAACTGTAAGTAAATCCGA
Right flanking sequence: Indices 137448 -- 137947
ATCTTTACCCTATTTTTTGGGATCAAACTCTATCTCTCCCTTATTTTTAGGGCCATTTTTTAGGT
AATTAGGATGAGAATCAGGTCAAGCTCCTGAGCTTATTCTTTCTGGTCTCATTGCTCTGCTCCTC
TCCCTCTGGGTCTCATTGCTCTGCTCCTTCACCGATATGACACTTTACAGTAGTCGAGTAAATGA
ATGAAATCTTCCCTTTTCGAGTCTCGCTGCTTCGCCTTCTTGCTTGTCCCTCTTCTCGTCTCGCT
GCTTCGTTCGCCCCTCTGCCTATCGGTCTCGCTACTTACTCCTATTAATGAGAGTTCACTCCTAT
TGAACTGTAAGAGAAGAGATTCATTCGACTTAACTCCTTAACCTATTTATTCAGCTATTCATTGT
CGGAAGTCAAGACTATCGAAATGAAAGAAAGATCAGCTCATTCACCTTCTTTCATTTTCTTCTTC
TCTTCTGCCTGAACCGATATGACCTTCAAACACTCCTTATACTCT
Found at i:149318 original size:21 final size:21
Alignment explanation
Indices: 149261--149329 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 21
149251 AAGATAGGTT
*
149261 AAAGAAAG-GAAAGG-AAG-A
1 AAAGAGAGAGAAAGGAAAGAA
*
149279 AAAGA-AGAAGAAAATGAAAGAA
1 AAAGAGAG-AG-AAAGGAAAGAA
*
149301 AAAGAGAGAGAAAGGAAAGACG
1 AAAGAGAGAGAAAGGAAAGA-A
149323 AAAGAGA
1 AAAGAGA
149330 AAACCTTAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
17 2 0.05
18 5 0.12
19 1 0.02
20 4 0.10
21 12 0.29
22 15 0.37
23 2 0.05
ACGTcount: A:0.67, C:0.01, G:0.30, T:0.01
Consensus pattern (21 bp):
AAAGAGAGAGAAAGGAAAGAA
Left flanking sequence: Indices 148761 -- 149260
AAAGGGGAAGGATCAAGAAGAAATAGGTTCAGTAGTGATTGAGAAGAGAAAGAAGGTGAGTTCAG
TAGTCCAGGAGCGAAGCTGTGAGACCGACAGGCGAAGGGGCGAAGCCGCTTTCTTTGTTACGTGG
TTGTGAGTCTTTCGTTCATTTTCTCGACTGTCAGGTGATTGAGCGAAGCAGTGAAACCGACAGGT
GAAGGAGTTTACAGTGAAAGAATCAATGAATTAGCAGCTTTACCCATTATACCTGATTTATTAAC
TAACCTGAACCTCGGCTTCTTTCGTCTCCCTTCTCCAACTCGGTAAAGTGGCTGTCTTCGCTCCT
CTCGGTCTCGTTGCTTCGTTCATTCACCTATTTGCTTCGCTCCTCTTTATTCAAAGACAAGGTAA
ATAGGCTGGCTGGATGAGAGGCTCCTTTACCTATTCATTGTCGGTCTCACAATTCCATTTCCTCT
CGCTGATTGCCCAAGGTAAATAAATGGGTTAAAGAAAGATAGGTT
Right flanking sequence: Indices 149330 -- 149829
AAACCTTAACCTGAACCGATATTCCCTGGCTGACCGGATTTCACTCCTCTCCTTACAGTCTTCGC
AGCTTCGCTCATTCGCTTGATTTTGTCTCCCAGCTTCGCTCCTCTCCCTTCGCCCCTATTCCCTT
TGCTACTGAACCTATATTATCTTATTCATTCAATCCTTCTTTCACTGAACTACTGAACCGGAACC
TGCTCGGCTTCACTCCTCTCTCTCGCTATCGGTCGAGTTCGCCCCTTTTCCTCTCCAACTCGGTA
AAGTCCATTGCCTGAACCTTTCTTTATCTTTCCTTGCCTGAACCTGAACCTGATTTCACTCTGTA
AACTCATTCACCTTCTTGAACTCCTATTCCTTTTCCTATTTCTTCTTGATCTTCTCCTTTCTGGA
ACTGTCTGTAAACGAAGAAACCCCCTTCCCCTTCTCTCACTGTTTCGATTACCTTATTGGTCTCA
AAGCACTACACTAAGTTTAAGTCTTTGCCCAGATAAAGAAGATGA
Found at i:150212 original size:30 final size:30
Alignment explanation
Indices: 150176--150233 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
150166 AACTCATGAA
*
150176 CCTATCGGTTTCACAATTCCATTGCCTGCC
1 CCTATCGGTCTCACAATTCCATTGCCTGCC
*
150206 CCTATCGGTCTCACAATTCCATTTCCTG
1 CCTATCGGTCTCACAATTCCATTGCCTG
150234 AACCTCTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.17, C:0.36, G:0.12, T:0.34
Consensus pattern (30 bp):
CCTATCGGTCTCACAATTCCATTGCCTGCC
Left flanking sequence: Indices 149676 -- 150175
TCCTATTCCTTTTCCTATTTCTTCTTGATCTTCTCCTTTCTGGAACTGTCTGTAAACGAAGAAAC
CCCCTTCCCCTTCTCTCACTGTTTCGATTACCTTATTGGTCTCAAAGCACTACACTAAGTTTAAG
TCTTTGCCCAGATAAAGAAGATGAGAGTAACCCAGCATTGGCCTGATGGACCTCTTTGCCTCTCC
TGTCTGTCTGTAAGAAAGATGAATGAGACGAAACCTTACTTAAACCTTAGACTGATTGAACTGTA
AGAGAAGAAGAGGTCAAGCTCCTCGGAACCAGATTGAACTCCGGAACCTCTTGGTCGAGCAGCTT
TCGCTCCGTAACCTTGACTTTATCAAAGAGAAACCCTCTCCTCCCTTTTCTCGTCGAGCGTCTTC
GACCCTTCCCCTGAACTGATATTACTATCACTTTCCAGTCGAGTCAATTCATTCAATCCGGAACA
GGAAGTCAAGACGAAACTGAAGATGAATGAGAGTGAACTCATGAA
Right flanking sequence: Indices 150234 -- 150733
AACCTCTACAACTATCATCAGGTCAAGCTCCGGAACAGGAAGTCAAGACTATCGAAGAATCAATG
AGAGTTCACTCTCAGTCAATCCGAAAGATGAATGTTGACTCCTCTCCCTATTTCTTCTTGAACTC
GGTAATAAAGCCGAAAGCGAAAACCTTCTCCTTCTGTTCGAGTTCGTTATTTTATTCTTTCATTC
ATTATTCTTGAACGAGGTAAAGCATATTCTCCGATTCCTTCTTTCACTCAATCACTCGCATATTC
AATTCCTTCCTCGCTCCTTCGCTTCGCTTCCTCTTTCTCTTTTCCTTACTTCATGGGGTGGGTGA
CTCTCGATGTTCATTGGCCTGTTGGTTGCGCCTGTAGCTGCGAACTCAACTGTCTGCTTGGTCTG
TCTTTCTTTTTCCAAGTGAATTAGAGAGGCGTATCTGATTGGTACGCTATTTGCCGATCTTTCCT
TTCTTTTCGTGCGGGTGCCACGGAATGGGCGAAGATCACCAGAGA
Found at i:163632 original size:30 final size:30
Alignment explanation
Indices: 163577--163754 Score: 108
Period size: 30 Copynumber: 5.6 Consensus size: 30
163567 GAGTCAAAGC
*
163577 GGGA-AGGAGCGAAGGCAGCT-CGACCGATA
1 GGGAGAGGAGCGAAGGCAG-TGAGACCGATA
*
163606 GGGAGAGGAGCGAAGGCTGTGAGACCGAGTTTA
1 GGGAGAGGAGCGAAGGCAGTGAGACCGA---TA
* * ***
163639 CGAGGCGAACGAGCTTCGGCAGTGAGACCGATA
1 -G-GGAG-AGGAGCGAAGGCAGTGAGACCGATA
*
163672 GGGAGAGGAGCGAAGGCTGTGAGACCGAGTTTA
1 GGGAGAGGAGCGAAGGCAGTGAGACCGA---TA
* * ***
163705 CGAGGCGAACGAGCTTCGGCAGTGAGACCGATA
1 -G-GGAG-AGGAGCGAAGGCAGTGAGACCGATA
163738 GGGAGAGGAGCGAAGGC
1 GGGAGAGGAGCGAAGGC
163755 TGGCCTTGTT
Statistics
Matches: 110, Mismatches: 25, Indels: 27
0.68 0.15 0.17
Matches are distributed among these distances:
29 5 0.05
30 45 0.41
31 6 0.05
32 2 0.02
33 8 0.07
34 2 0.02
35 6 0.05
36 36 0.33
ACGTcount: A:0.28, C:0.18, G:0.43, T:0.11
Consensus pattern (30 bp):
GGGAGAGGAGCGAAGGCAGTGAGACCGATA
Left flanking sequence: Indices 163077 -- 163576
AATAAGTAAATCAAAATGACAAGAGCCCAGATTACAAATGAATGAATGAAAACGTGACGGAATTG
GTCCCGGGCACTCTTCGGGACGGAATAGAAGAGGGGAGGAGAATCAAATGAAAGAAAAACGAGTG
TTTGAGACAATAAGGAGAAAGATAAAGATCAGAGCTCAGATTCCCAGTTTACAGTTAAAAAGGTC
ATAGAGAAAAGAAAAGAAAAGAAAAGCAGTTAAGCAGTTAAGAAGGAAAGGAAGAGGAAAGAACC
AAGCTGTTTAGAGCCGAAGGAGCTTTACCGAAAGAGTGAAAGAAAGGATCAAGAGCAGTAGCAGT
TCAAGCAAGAAGGTTCAGGTTCAGAGAAAGAATGAATAAGGAGTCTCGGCTTTACCTTGTTCAAT
CAAGAAGGGGGAGTAAATTCATTAGCGGCTTTCCCTTGTGTTTGAAGGAATAAATAGGTTCAGTA
GTTCATGAGTTTACCGAGTTCCATCACAGGTTATAGAGTCAAAGC
Right flanking sequence: Indices 163755 -- 164254
TGGCCTTGTTCACTGTTCGTTCAGTAGTTCCGTATAGAAGCTGATAGTTTACGAGTTCAATCTGT
CTGACGAATCCATCTTGAGGATTTACTGACAGTTCACTCTCATTTCTTCTTCGATAGGATTGACT
GACAGTGAACGATGACGAATGAATAAGTCGTGTTTACAGGAGAATGAATCTTTAGTCTTGACTTC
AACATTACCTCGGCCCAAAAGACCTCGATTTTCTCCCTCAAAATAGGGTAAAGATAGACTTTGAT
CCCTAAAAATACGGGGGAGGATAGCTTTTTTCTAGTTTTTTGAGTGTTTACAGTCGAGTTACCGA
GGGAAATAGGGTCAAATGGACTGTTTTATCCCTAAAAATACGGGGGGGGATAGAATTTCTTTTCT
TGAAGCTGCTTTCCTTAGGGAAAAAGGTCTTTTAATGTTTTACAGTTATATGTGGATAGAATTTC
TTTTCTTGAAGCTGAAGCTGTTAGGGAAAAAGCTCTTTTAAGGTT
Found at i:163696 original size:66 final size:66
Alignment explanation
Indices: 163598--163756 Score: 318
Period size: 66 Copynumber: 2.4 Consensus size: 66
163588 AAGGCAGCTC
163598 GACCGATAGGGAGAGGAGCGAAGGCTGTGAGACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTG
1 GACCGATAGGGAGAGGAGCGAAGGCTGTGAGACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTG
163663 A
66 A
163664 GACCGATAGGGAGAGGAGCGAAGGCTGTGAGACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTG
1 GACCGATAGGGAGAGGAGCGAAGGCTGTGAGACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTG
163729 A
66 A
163730 GACCGATAGGGAGAGGAGCGAAGGCTG
1 GACCGATAGGGAGAGGAGCGAAGGCTG
163757 GCCTTGTTCA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 93 1.00
ACGTcount: A:0.28, C:0.18, G:0.42, T:0.13
Consensus pattern (66 bp):
GACCGATAGGGAGAGGAGCGAAGGCTGTGAGACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTG
A
Left flanking sequence: Indices 163098 -- 163597
AGAGCCCAGATTACAAATGAATGAATGAAAACGTGACGGAATTGGTCCCGGGCACTCTTCGGGAC
GGAATAGAAGAGGGGAGGAGAATCAAATGAAAGAAAAACGAGTGTTTGAGACAATAAGGAGAAAG
ATAAAGATCAGAGCTCAGATTCCCAGTTTACAGTTAAAAAGGTCATAGAGAAAAGAAAAGAAAAG
AAAAGCAGTTAAGCAGTTAAGAAGGAAAGGAAGAGGAAAGAACCAAGCTGTTTAGAGCCGAAGGA
GCTTTACCGAAAGAGTGAAAGAAAGGATCAAGAGCAGTAGCAGTTCAAGCAAGAAGGTTCAGGTT
CAGAGAAAGAATGAATAAGGAGTCTCGGCTTTACCTTGTTCAATCAAGAAGGGGGAGTAAATTCA
TTAGCGGCTTTCCCTTGTGTTTGAAGGAATAAATAGGTTCAGTAGTTCATGAGTTTACCGAGTTC
CATCACAGGTTATAGAGTCAAAGCGGGAAGGAGCGAAGGCAGCTC
Right flanking sequence: Indices 163757 -- 164256
GCCTTGTTCACTGTTCGTTCAGTAGTTCCGTATAGAAGCTGATAGTTTACGAGTTCAATCTGTCT
GACGAATCCATCTTGAGGATTTACTGACAGTTCACTCTCATTTCTTCTTCGATAGGATTGACTGA
CAGTGAACGATGACGAATGAATAAGTCGTGTTTACAGGAGAATGAATCTTTAGTCTTGACTTCAA
CATTACCTCGGCCCAAAAGACCTCGATTTTCTCCCTCAAAATAGGGTAAAGATAGACTTTGATCC
CTAAAAATACGGGGGAGGATAGCTTTTTTCTAGTTTTTTGAGTGTTTACAGTCGAGTTACCGAGG
GAAATAGGGTCAAATGGACTGTTTTATCCCTAAAAATACGGGGGGGGATAGAATTTCTTTTCTTG
AAGCTGCTTTCCTTAGGGAAAAAGGTCTTTTAATGTTTTACAGTTATATGTGGATAGAATTTCTT
TTCTTGAAGCTGAAGCTGTTAGGGAAAAAGCTCTTTTAAGGTTTT
Found at i:164219 original size:71 final size:71
Alignment explanation
Indices: 164125--164277 Score: 227
Period size: 71 Copynumber: 2.2 Consensus size: 71
164115 AAATACGGGG
*** * *
164125 GGGGATAGAATTTCTTTTCTTGAAGCTG-CTTTCCTTAGGGAAAAAGGTCTTTTAATGTTTTACA
1 GGGGATAGAATTTCTTTTCTTGAAGCTGAAGCT-CTTAGGGAAAAAGCTCTTTTAAGGTTTTACA
164189 GTTATAT
65 GTTATAT
* *
164196 GTGGATAGAATTTCTTTTCTTGAAGCTGAAGCTGTTAGGGAAAAAGCTCTTTTAAGGTTTTACAG
1 GGGGATAGAATTTCTTTTCTTGAAGCTGAAGCTCTTAGGGAAAAAGCTCTTTTAAGGTTTTACAG
164261 TTATAT
66 TTATAT
164267 GGGGATAGAAT
1 GGGGATAGAAT
164278 AAATTAATTA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 72 0.99
72 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (71 bp):
GGGGATAGAATTTCTTTTCTTGAAGCTGAAGCTCTTAGGGAAAAAGCTCTTTTAAGGTTTTACAG
TTATAT
Left flanking sequence: Indices 163625 -- 164124
TGAGACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTGAGACCGATAGGGAGAGGAGCGAAGGCT
GTGAGACCGAGTTTACGAGGCGAACGAGCTTCGGCAGTGAGACCGATAGGGAGAGGAGCGAAGGC
TGGCCTTGTTCACTGTTCGTTCAGTAGTTCCGTATAGAAGCTGATAGTTTACGAGTTCAATCTGT
CTGACGAATCCATCTTGAGGATTTACTGACAGTTCACTCTCATTTCTTCTTCGATAGGATTGACT
GACAGTGAACGATGACGAATGAATAAGTCGTGTTTACAGGAGAATGAATCTTTAGTCTTGACTTC
AACATTACCTCGGCCCAAAAGACCTCGATTTTCTCCCTCAAAATAGGGTAAAGATAGACTTTGAT
CCCTAAAAATACGGGGGAGGATAGCTTTTTTCTAGTTTTTTGAGTGTTTACAGTCGAGTTACCGA
GGGAAATAGGGTCAAATGGACTGTTTTATCCCTAAAAATACGGGG
Right flanking sequence: Indices 164278 -- 164777
AAATTAATTAATGGTCCGTCAGAGTTCAATCAGGTTCAGGTAAAGTAGTTCAGTCTCTTTTCTTT
TCTTTCCTCTCCAGTAAAGGTTCTGGTTCAGGTTCAGGTTACGGATTGAATGAATAAGCTGTTCA
GGTCATATCGGTTCCGGGGCAGGTTCCGGTCAGGTCATAGAGGTTCAGGAGTAAGTAGCTCTCCT
GTCTGCTAATTCATTTATTCTATCACTGTAATAGGTTCTGTCTCATTCATCTTTCATTTTCTTCT
TCAATCAACAAAGACTGTAAACTCGCTCGCAGAAGGTTCAGGTTCAGGTTTGAGGTTTCCTCTTC
TTTTCTTACATTCTCTAAATAAAGGTTCTGGTTGAACTATCTCTTTGCTTTTCCGTACTCTCCTG
GAATATCTGGTTCAGATTCTTTCATTCTCGTCAGGTAATATCGGTGAAGGAAGAAGACGAGTTGG
AGAGGTTACGGAGTTCAGTCTCATTCATCTCTCTCTTTTCGTCAG
Found at i:165043 original size:19 final size:19
Alignment explanation
Indices: 165019--165064 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
165009 CCGGATTCAT
*
165019 TCTCCTTCTGCTGGGCTTC
1 TCTCCTTCCGCTGGGCTTC
165038 TCTCCTTCCGCTGGGCTTC
1 TCTCCTTCCGCTGGGCTTC
165057 TCTCCTTC
1 TCTCCTTC
165065 GTCTCTCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.00, C:0.41, G:0.17, T:0.41
Consensus pattern (19 bp):
TCTCCTTCCGCTGGGCTTC
Left flanking sequence: Indices 164519 -- 165018
TCATCTTTCATTTTCTTCTTCAATCAACAAAGACTGTAAACTCGCTCGCAGAAGGTTCAGGTTCA
GGTTTGAGGTTTCCTCTTCTTTTCTTACATTCTCTAAATAAAGGTTCTGGTTGAACTATCTCTTT
GCTTTTCCGTACTCTCCTGGAATATCTGGTTCAGATTCTTTCATTCTCGTCAGGTAATATCGGTG
AAGGAAGAAGACGAGTTGGAGAGGTTACGGAGTTCAGTCTCATTCATCTCTCTCTTTTCGTCAGG
TGTAGGAGTGAACTTTCATTAATCTTTCGGTTTCGTCTTTCAAAGCAGCTAATTCATGTATGTAT
TCTTCCCTTTATTCACTCACTGTAAAAGATCAATACTCAACTGGGCTTCTCTCCTTCCGCTCGGC
TTCTCTCCTTCGGTCTCTTTTCTGTTCTTTGCTTTCTCCTCTTTATTTATTCTTTCACTCGGTAA
CTAGGCTTTGCTTTCTTTGATTACTTCATTCCCTGCCGGATTCAT
Right flanking sequence: Indices 165065 -- 165564
GTCTCTCGTGCTCTTTCCTTTCCCTCGTTATTCCCCGTACCGTAATTAGTATTCATCTTGATTTG
CTCCTGTGGGAATCCCTTGTTTTTCGTCGAGATTGGATTGGGGTTCCCTGTCTGCTAAGTCCCTG
AGTGAGAGTGGGGCCAATCCTTGCTTCACTTCCCTCTGATTTTGTGGTTCTTTTCTTTTCCTCTA
TTGACAAGATAGCTTTTCATGTTCTGACTGATTTAGTCACTTGTGAATCTGTCGTATTCAGCGTA
TATTCAGTCTGATTCGGCTTGGAAAGTAGTCTTTCGTTCGTAAGCAGGAGCGTAGGTCTTCGCCC
CCCTTCCTTGTTTGGGCAGGTTCGCGGGTCAATGTTTTTTCCCGCCCCGACCGTCAGCAGCTGGG
TTTCCCCCCAAATCAAAAGCAAAATGGTCTGCCTCCCGGGTCTCGTCAAGCAATTCTACGACGCG
AGCAAATCCGGCGTCGCCAAACGAGTGGCAGATTTTCCCTCATCC
Found at i:179586 original size:34 final size:34
Alignment explanation
Indices: 179516--179587 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
179506 GAAACCTCTC
** **
179516 CCCTCTCCTCCCTTTTCTCGTCTCGCGTCTTCGA
1 CCCTCTCCTCCCTTTTCTCGTCGAGCGTCTGAGA
179550 CCCTCTCCTCCCTTTTCTCGTCGAGCGTCTGAGA
1 CCCTCTCCTCCCTTTTCTCGTCGAGCGTCTGAGA
179584 CCCT
1 CCCT
179588 TTTCCTTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.06, C:0.46, G:0.14, T:0.35
Consensus pattern (34 bp):
CCCTCTCCTCCCTTTTCTCGTCGAGCGTCTGAGA
Left flanking sequence: Indices 179016 -- 179515
GAGTTATGAGAAGGAAGTGATTGTGAGTTATTCAAACACTATTCTTTCTCTTCCCCTTCCCCTTC
AAACCCAGTAACCTTGGTCTCTTTTCTTGAACTCGTTCTCTTCTCTTTGCTTTCCCTTCAAAGAC
TCGGTAAATAAATAGGTGTTTTCATCTTCCGTGCTGGACTGATTGAAGAAAGAAGAATGATCCTT
GACTCGCATATGAAATCCTTCTTTCACTCTTTGACTCTACTTTATTCCCTTCTGTTATGGTTTGT
TATTCTTTCAGTATTCTTGAACTCGGTAAACTCCTGACTGAACTACTTCCCTTCCGGAACTCTTG
AACAAGGTCAAGCTCATTCACCTATTCTATTGGTAAAGCAGCTAATTGATTTCCTCTGCTTTCAC
TGTCAAAGCTACTCCTTCTTCTTCTTATTAATTCTCCTGAACAGGACATATGGGCGGCCGGTCGG
TCTGTCTCCTCTCTGTTCTTTAAGGAAGTCAAGACGAAACCTCTC
Right flanking sequence: Indices 179588 -- 180087
TTTCCTTCTTTCACTCGGTAAACTCATTCACCTTCTTTAACTGTAAACAAGGGAAAGCATATGAA
ATGAATTGACTCGCCATTCACCTGTCTGTCGGTTTCACTCCTCTCCCTATTTTTGAGGCTATTTT
ACAAGGGAAAGCCGAAACTCTCGATTCATTCTTTAACTTCTCTTTCTCCTCTGCCTACTGACTCA
TTCAGTTTTTCTTTCCTCTATCTATTCCCTGACCTGCCTGCCCCTTCACCTCTCTCTCTATTCCC
TCCCCTTCAGTGATTGTGAGTTATTCGAAGGAAGTTCTTGTTCACCTCTCTTTTCTTTCACTCGG
TAAATAGATAGTAGTCTTTCTCCTTCACCTCGGCTTCGCTCCTCCCCCCCTCTTCTTTCTTACAA
CTAGTTGCTGCATGCTATCTATGGGATCTCGAGCAATGGATCTTCGGCCGAATTCTATTTTGACT
GGCACGACTCTTTTCTTTCTCTTTTTGTGCTGGCATTTGAGTTGT
Found at i:190586 original size:17 final size:19
Alignment explanation
Indices: 190560--190600 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
190550 CACAGCTTCG
190560 CTCCTGT-CCC-TGCCTAA
1 CTCCTGTCCCCATGCCTAA
*
190577 CTCCTTTCCCCATGCCTAA
1 CTCCTGTCCCCATGCCTAA
190596 CTCCT
1 CTCCT
190601 CTCGGCCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 3 0.14
19 12 0.57
ACGTcount: A:0.12, C:0.49, G:0.07, T:0.32
Consensus pattern (19 bp):
CTCCTGTCCCCATGCCTAA
Left flanking sequence: Indices 190060 -- 190559
GGATATTCAATCCTTCTTTCACTGTAAGGGTTTCACTCACTATTCTTTCACTCGGTCAAGCAGCT
TCTCTCCTTCAATCAATCCTTCTCTCTCTCCTTCTCCTTCTTTCAGTTATTTATGCAAAGACGAG
GTAAACTGGGGGATGATTCAAACACTCTTTTCCGATATTCCCTTATTGTTTGTGAGTTATTAGAA
GGCAGGAAAGGAAGTTCTTGTTCGTTCACCTCTGCCTGATTGAACTGTAAGCTCGGGAAAGCATA
TGAAATCCTTCTTTCTTTTCCTCTCCTGTAACCAAAGACTGACCGAAAGCCCCACATACATTATC
GTTAACTCCGCTCTCTATGTATGGGTCTCAAACAAAGCTTGCTTGGCTCATTCCCCTCTCGATAT
TACCGGGCCTGCCTGACCCTATGTTCTTCTTTTTCTTGTCTTTCACGGCGCTATGGATTGATTCT
TTAACTGTAAACTGCTTCACCTCCTCTGTCGGTTTCACAGCTTCG
Right flanking sequence: Indices 190601 -- 191100
CTCGGCCTCACTGCTACTCTACTGTTTCACTCCTCCTCTCTCTCCCTCTGCTTGCTGCCTATTTA
ATTTCTTCTTTTTACTAGGTAAAGCCATCTGCTGCCTGCTGCTAATGAAATGAATGTACTCTTTC
CTCACCTTTCCTTTAATTCTCCTGAAGAGGAAGGAAAGACGAAACCTCAAACCGGGACGATTCTT
CTTTCGGGAAGTCAAGCAGCTGGATGGATGAGAACCTGATTGAACAGCTCTTGCTCCTTCACCCC
TATTCCCGGACCAGATTGTAAGGAGTTAGTTAGCAGCAAAATAGCTTGACAGTCTGGAGAGTAAA
GAAAAGAGATAGAACCTTTACTACAGGAGGGGGGAGTAAATGAATGAAAGAAGGAAGGAAGGAGT
TAGCAGCTTTTCAAGGAAATAAGGTAAGGAAGGAGTTAGCTGCTTTTCAAGTCGAAACCAACTAT
CAGGGAGAGTGAACTGGAAGGAAAGACTATCGATTCCTTCTTGAT
Found at i:191020 original size:36 final size:35
Alignment explanation
Indices: 190971--191041 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 35
190961 GTAAATGAAT
190971 GAAAGAAGGAAGGAAGGAGTTAGCAGCTTTTCAAG
1 GAAAGAAGGAAGGAAGGAGTTAGCAGCTTTTCAAG
* *
191006 GAAATAAGGTAAGGAAGGAGTTAGCTGCTTTTCAAG
1 GAAAGAAGG-AAGGAAGGAGTTAGCAGCTTTTCAAG
191042 TCGAAACCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 8 0.24
36 25 0.76
ACGTcount: A:0.38, C:0.08, G:0.32, T:0.21
Consensus pattern (35 bp):
GAAAGAAGGAAGGAAGGAGTTAGCAGCTTTTCAAG
Left flanking sequence: Indices 190471 -- 190970
TGTTCTTCTTTTTCTTGTCTTTCACGGCGCTATGGATTGATTCTTTAACTGTAAACTGCTTCACC
TCCTCTGTCGGTTTCACAGCTTCGCTCCTGTCCCTGCCTAACTCCTTTCCCCATGCCTAACTCCT
CTCGGCCTCACTGCTACTCTACTGTTTCACTCCTCCTCTCTCTCCCTCTGCTTGCTGCCTATTTA
ATTTCTTCTTTTTACTAGGTAAAGCCATCTGCTGCCTGCTGCTAATGAAATGAATGTACTCTTTC
CTCACCTTTCCTTTAATTCTCCTGAAGAGGAAGGAAAGACGAAACCTCAAACCGGGACGATTCTT
CTTTCGGGAAGTCAAGCAGCTGGATGGATGAGAACCTGATTGAACAGCTCTTGCTCCTTCACCCC
TATTCCCGGACCAGATTGTAAGGAGTTAGTTAGCAGCAAAATAGCTTGACAGTCTGGAGAGTAAA
GAAAAGAGATAGAACCTTTACTACAGGAGGGGGGAGTAAATGAAT
Right flanking sequence: Indices 191042 -- 191541
TCGAAACCAACTATCAGGGAGAGTGAACTGGAAGGAAAGACTATCGATTCCTTCTTGATCTTGAT
CTGATCCGAAACTCTCGATGAATGAAAGAGTAAACACTCTCGAAGAATCAATGATCCTGAACTGT
AAGTCAATCCTCAAGATTCCTTCTATCTCTCCCTGATTTTTAGGGCTATTTAGGGCCGAGGTAAT
GTTGAAGTAGAAGGAAAGACTATCGAAGAAGAAATGAGAGTGAACAGGAAGGAAAGAAGAAGAAA
TGAGAGTGAACTGTAAGTCAATCCTCATTCTTCCTTCTATCTCCCCCTGATTTTGAGGGATAAAA
GGGAGGTCTTGAGGGCCGAGGTAATTTGGAAGTCAAGACTCTCGAAGAATCAATGATCGTTAACT
GGAAGTCAATCCTCATTCTTCCTTCTTGATCTTGATCTTCTCCTTCTTTCACTCTTGAACTCGGT
CTCGCTCTTTCACCCCTCTCCAACAACTATCAGCTTCTCTCCTTC
Found at i:193228 original size:14 final size:14
Alignment explanation
Indices: 193209--193236 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
193199 TCAATTCATT
193209 AGCAGCTTGTCGAG
1 AGCAGCTTGTCGAG
193223 AGCAGCTTGTCGAG
1 AGCAGCTTGTCGAG
193237 CTACTTACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.36, T:0.21
Consensus pattern (14 bp):
AGCAGCTTGTCGAG
Left flanking sequence: Indices 192709 -- 193208
TCTCCGTAACCTTTCCATGAGAGGAAATTCATTAGCAGTAGCAGCGTACTAAACTCTTTATGAGT
TATCAATCACTCAATCACCTTCTTTGTACTGTGTACTGTAAGAAAAGAGATTCATTCTTAACTAC
TGAAGTAACCTGATTGAAGAAGTTTACAGTCTTTTAAGGGAGAAGATCAAGGAAAGACTGAACTA
CTGAACCTGAAGCTATTTATTCTGGAACTGTAAGTGAGCAAAGAGTCAAGCGAAACCCTCTCCTT
TGTCGAGCTGCTGCGCTCCTTCCTTCACCTATTGATTATTCAAAGACTGATCTTTCTCCTTTCTT
TCTTGCTTGAACTCGGTAAATAGGCTTGCTTCTCTCCCGTCCCGAACCTTTTCCTTATGGTCTCA
TTGCTTCTCTCCGTAACCTAATACTCTCTTAATATTTATACCTATTCGCTCATTCACCTATCAGT
AAAGCAATTCAATCTACTGAACCTGACGAGTAGAGTCAATTCATT
Right flanking sequence: Indices 193237 -- 193736
CTACTTACTCCTTTACCGTCACCTATACAGTCGAGTCAATTCAATCCGGAACCATAATCTGATTT
CAACTCCTTTATTTACAGTGAATAAATAGAAAAAGACTAGAAACAGGAGCTGCATGAGAAGACCC
TATGTTTGAAATGGAATTGTTCAACCAACAGCTGAATGGAAAGCCGAAACTAAAGAGGAATTATC
TATCCTTCCTCTCCAACTCGCCTTCTTCCTGATCCGGGCGGGGAACCTACCTTTACAGAATCTAA
TGTAAAGATGAATGATCCCACCCACTCCTCTCCTTTACAGTCTTTGTTTGAATCAATGAATTAGC
AGTAGCAGCTTTGAAAGACTAAACTCAAGACTCATTATCCTGAACTACTGAACCTGACCTTCGTA
AACAAATCTGTACTCCTTATGAATGAGACTCAACTATATTCTCCTTTTCCTATTACTGATTGAAC
GATTTATTTACTATTCTTTCAGAAGGTAAAGCATATTCTTTTTCT
Found at i:194217 original size:19 final size:19
Alignment explanation
Indices: 194193--194231 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
194183 GCAGCTTCTT
194193 TCTCTAAGGAACGGAACAG
1 TCTCTAAGGAACGGAACAG
194212 TCTCTAAGGAACGGAACAG
1 TCTCTAAGGAACGGAACAG
194231 T
1 T
194232 GCACCAACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.18
Consensus pattern (19 bp):
TCTCTAAGGAACGGAACAG
Left flanking sequence: Indices 193693 -- 194192
ATTTATTTACTATTCTTTCAGAAGGTAAAGCATATTCTTTTTCTTTCTCCTGAGCTACTGTCCCT
GATGGAACTCTTGAACTCGGGAAAGCTATTTGCTTGAAGAACCTTTACAGTCTCTTGTTCTAGTA
AAGAAAGAACACTAGGAGTTCAGTCGAATTGAAAGCACGAAAGACGGATGCATGCCTTGCCTCAT
TATCCATTCCCGATACCCCCTTACCTTTATTATATTATTACAGACAGCTCTTTATCCTTTCTTTT
CTTTATTACAGACAGCTCTTTCCACAGACAGACAGCTCTATTACAGACAGCTCTTTCCCCTGCCG
CTCTTCCCCCTTTAACTCTTTCTCACCTTTCCTTCCCTCTGAGCTCCGTAACCTTGACTTTACAG
TCGGGTAAGATAGAACAGTCAGTCAAGACTGAACCTCATCAAACCTTTTCCCTTCTTTCACAGTA
AACTCCTTCCCTGAACCTGCCCCCCTCTCCAACTAGCAGCTTCTT
Right flanking sequence: Indices 194232 -- 194731
GCACCAACCCACTCTACTTACGACACAACAGATTCCCTGAAACTAATAGAGTGGCTTCCTTCGCT
CCTTTTCCCTATTTATTCACTGCTGTAAACTAACTAAGACTCTAAACTCCTTATTCTATAGACAG
ATGGAACTCGTAAACTACCAGCTTCTCTCCTACACCGGAACCGATAGGACCTGAACTTGATTGAC
AGTTAGTTAAAGAATCAAGGGAGAATCAGAATCAGATATTCCTTTACATGAGGAGAGTCCCCATT
CAGATTCAATCCTGTAAACGAAGAAACTGAATGAGCTTCTCTTTCACCTGAGCCTTCAAACACTC
TTTTACATAGGCAGGGCGCATTTGCTTTTCTTATATTCAAAGAATGAATTTACTCGACTGACTGT
AAACACTCCTTATTCAATTACTGAGAGTGAACTTCGTCACCTTTGAAGTCAGAAAAAGAGGTCAG
TGCAGTGGTTGACACTTTCGCTCCGTCACCTATACTGTCTCATTG
Found at i:194852 original size:27 final size:24
Alignment explanation
Indices: 194811--194860 Score: 64
Period size: 27 Copynumber: 2.0 Consensus size: 24
194801 TCGATTCATT
*
194811 CTACTTAACTACTGAACCTGATTC
1 CTACTTAACTACTGAACCAGATTC
194835 CTACTTAACTAGACCTGAACCAGATT
1 CTACTTAACT--A-CTGAACCAGATT
194861 AAACTGATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 10 0.45
26 1 0.05
27 11 0.50
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (24 bp):
CTACTTAACTACTGAACCAGATTC
Left flanking sequence: Indices 194311 -- 194810
ATTCACTGCTGTAAACTAACTAAGACTCTAAACTCCTTATTCTATAGACAGATGGAACTCGTAAA
CTACCAGCTTCTCTCCTACACCGGAACCGATAGGACCTGAACTTGATTGACAGTTAGTTAAAGAA
TCAAGGGAGAATCAGAATCAGATATTCCTTTACATGAGGAGAGTCCCCATTCAGATTCAATCCTG
TAAACGAAGAAACTGAATGAGCTTCTCTTTCACCTGAGCCTTCAAACACTCTTTTACATAGGCAG
GGCGCATTTGCTTTTCTTATATTCAAAGAATGAATTTACTCGACTGACTGTAAACACTCCTTATT
CAATTACTGAGAGTGAACTTCGTCACCTTTGAAGTCAGAAAAAGAGGTCAGTGCAGTGGTTGACA
CTTTCGCTCCGTCACCTATACTGTCTCATTGCTTCTCTCCTTCCCCTATGTATTCTTATTCTTTA
ACTGATCTTGCTTGATCCTTGAACTGTAAAGACTATCGATTCATT
Right flanking sequence: Indices 194861 -- 195360
AAACTGATCTTTCTCCTTATTACCATCTGTTATTGTGTTATTCTTTCACTATGTTTACGGTCTGC
TCCTTGCCTTGATTCCTTCTTTCTCTCCTCAACCCATTATTGATTGATTCTTTCTCTCTCCTTCA
ACTGATTTAAGTGATTCAGCTATCGGTGTCTTCTCTCTTCTTTCCCTGAACTGTAAAGAGGGAAT
CTTAGCTCAAAGACTGATCTTTCTCCTGAAACTGATTGAATGAGGTTCTCTTTGCTCCTTAACCT
CTCGCTTGCTTCCCCGAACTGTAAACAAGGGATGAACTATTTTCTTTCTTTTACCTCCTTTCTTT
AACTGTCAAAGATCAATACTCAACCTTCAACCTTTTCCTGGGCCGGCTTCTCTCCTCAAACCTAT
TTATTCGCTGTAACCTCATTCACCTTCTTGCTTGAACAAGGTAAAGTCAAGCAGCTGCTTCATTG
ACTCTCTCTCCCCGATTGACCAAGGTAAACAGGAGGATTCCTCTT
Found at i:195464 original size:20 final size:21
Alignment explanation
Indices: 195425--195465 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
195415 TCTATCCCCT
**
195425 TCAGTGATTGGTTTGTTATTC
1 TCAGTGATTGGTGAGTTATTC
195446 TCAGTGATT-GTGAGTTATTC
1 TCAGTGATTGGTGAGTTATTC
195466 CTTCTGGAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.17, C:0.10, G:0.24, T:0.49
Consensus pattern (21 bp):
TCAGTGATTGGTGAGTTATTC
Left flanking sequence: Indices 194925 -- 195424
CTCCTTGCCTTGATTCCTTCTTTCTCTCCTCAACCCATTATTGATTGATTCTTTCTCTCTCCTTC
AACTGATTTAAGTGATTCAGCTATCGGTGTCTTCTCTCTTCTTTCCCTGAACTGTAAAGAGGGAA
TCTTAGCTCAAAGACTGATCTTTCTCCTGAAACTGATTGAATGAGGTTCTCTTTGCTCCTTAACC
TCTCGCTTGCTTCCCCGAACTGTAAACAAGGGATGAACTATTTTCTTTCTTTTACCTCCTTTCTT
TAACTGTCAAAGATCAATACTCAACCTTCAACCTTTTCCTGGGCCGGCTTCTCTCCTCAAACCTA
TTTATTCGCTGTAACCTCATTCACCTTCTTGCTTGAACAAGGTAAAGTCAAGCAGCTGCTTCATT
GACTCTCTCTCCCCGATTGACCAAGGTAAACAGGAGGATTCCTCTTTCACTCGGGCTGAACTATT
CGATCACTCTACTCTGTCTCAGTCTTCTTCCTTCATCTATCCCCT
Right flanking sequence: Indices 195466 -- 195965
CTTCTGGAACTGTAAACAAAGAGTCGAGATGAATCAGACTCTCCCTTAAACCTTCACCCTCTTTC
ACTACTACTGAATGAGACAGATTGAACTCAAAGACTAGGTAAAGCATATGGGCTCTTTTCTTGAG
CGAGGTAAACTTCTCTCCTTCCGCTCGGCTTCTTGACTACTTCTCAAATACGTAAACAGCTCATT
CCATATATTCTTCAGCAGGTGGAGTTGTTGACACGAGACTCTCCAACTCGGGTCTCACTATTCTT
TCCTTTGATTCTGATTGAACTACTACTGAATGAGCCAGATTGAACTCAATCACTATTCTTGAACA
AGGTAAAGCATATTCAGCTATTTATTCTGGAACTGTAAACACAGACGAAACGAAAGAGTTGTAGA
ACTGAACTCATTCACCTATTCTATTGGTCGGTCTCACTGCTGCGCTCAATCACCGGAACACAAAG
ATAAGAGGAAATGAAAGCGAGAAAACAAACAAACTAACTAGTACT
Found at i:199767 original size:16 final size:15
Alignment explanation
Indices: 199730--199773 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
199720 AGGTGTAGGA
199730 GTGAAAGAAGGAAAAG
1 GTGAAAGAA-GAAAAG
* *
199746 GAGAAATAAGAAATAG
1 GTGAAAGAAGAAA-AG
199762 GTGAAAGAAGAA
1 GTGAAAGAAGAA
199774 GACGAGTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.32, T:0.09
Consensus pattern (15 bp):
GTGAAAGAAGAAAAG
Left flanking sequence: Indices 199230 -- 199729
ATATGCTTTACCTTGTGATATAGAAGAATAAAGAGGAAAAGGAAGAAGCCACATTCTCTTCCATC
CCTTTTCTTTTACCTTGTGTTTGAGGGTTCCGGAAGAGTCCATGAATTAGCTATTGATCCTTTTA
CCTTGTTCCATCAGGTTCAGGTTCAGTAGTTAGAGGTTCGGGGGCAGGTTCATCAGCTGATCTTT
CTGTTTCCCTTGTTTACTGTTCAAGAATCCATCAATAGGGAGAAGAGTCAACAAATCTTTCTTGA
ATATGCTTTGGTTACAGTCTAGTATAAGAACAAGAACATCAGGTAATAGATAGGGGCAGGCAATG
GAATAGCTTTCCCGAGTGAGTGTGTGTTCGAATCAATAGGTGTTCCGGCCGGAGTGAAGGAGAGA
GAATGAATAAGGAGTCTTTCAACACTTTCTCATCCAGCCAAGCCAGCCCATTTACCTCTTCTCTT
TTCTTACTGGGCAATCAGGGAAGGGAATACAGGTGAGGTGTAGGA
Right flanking sequence: Indices 199774 -- 200273
GACGAGTTGGAGAGGTTACGGATTGAATTGACTCTCATGGTTTTGGTCCGGTGAAGCATTGAATG
AATCTACGACTGTAGAGTGAAATTTATTCTTTCCTGACTGTGAAGTCTCATTCATCTTTCGTTTC
GTCTTCTAAATTACCTCCTTCAATAGAATAGGGTCAGTCCGGTCATAAAGGAAAAGGTCAGGGCA
TATCGGGGCAGGTTCCGGGAAGGGTTTCATTCAGTAGTTCCGCTTCCGGTCATATCGGGTCAGGG
GAAGTAGCTAATGAATTTAATATCCCTTGTTCCGGTGAAGGAGACTGAAGAAAGAAAGAAATAGG
TTCAGTAGTTCAGGCAATGAAATTGTGAGACCGAGTTGGAGAGGTGAATGAGTTTACTGTTCCAG
AAGAAATAGGAAAAGGTTCGGGTTCCGTAGCGAAGCTGCTTTACCGAGTGTTGTTTGAAGAATAG
TCCGTCCTGGTTTGAGCTTGAGTCTTTCCTTCCGAGAATAGGTGA
Found at i:201435 original size:71 final size:71
Alignment explanation
Indices: 201309--201512 Score: 248
Period size: 71 Copynumber: 2.9 Consensus size: 71
201299 CTAAAAAGTG
** *** * * *
201309 ATCTTTTACAGTTATATGGGGATAGAATTTCTTTGATTTCCTATGCTGCTGTTAGGGAAAAACCT
1 ATCTTTTACAGTTATATGGGGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAACCT
201374 CTGACGA
66 CT-ACGA
*
201381 A-CTTTTACAGTTATATGGGGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGGAAAACCT
1 ATCTTTTACAGTTATATGGGGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAACCT
***
201445 CTTTTA
66 CTACGA
* ** *
201451 ATGTTTTACAGTTATATGGGGATAGAAAATCTTTTCTTTCAGCTCCCGCTATTAGGGAAAAA
1 ATCTTTTACAGTTATATGGGGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAA
201513 GGTCTTTTAA
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
70 2 0.02
71 111 0.97
72 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (71 bp):
ATCTTTTACAGTTATATGGGGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAACCT
CTACGA
Left flanking sequence: Indices 200809 -- 201308
CCGAGTTTACTGTTCAGGTCATATCGGGTCAGGGGAAGTATAAGTAGTTCAACCCTTGTTTACGG
GAGAGTAGTAAGTAAATGAATGAATTAGTTGCAGCGGCTTTACCTCGTTCAAGAACTGACTTAAA
CTTAGTCCTTGTGAGACCAATAGAATAAGGGAATCTCAGTTGCCGGCCGAGTTCAAGACTAAATA
GGTTACAGAGTGAAGGATCATGAATCTTTGCTTCTTCTTTGACAGTTAAAGAAGGGAAGGAGAGG
TTAAGCAGAAGAACTGACTTAAACTTAGTGCTTGTCTTGTGAAACCGATAGGCAGAGGAGTCAAG
GATCAGTCTGGTTTCGTCTTTCAAGCAGAATCAAAGAAAAGAGAAGAGACCGGCCAATAGTTCTA
AGAGAGATGAAGTAGTTTACCGAGTTCAATCTATCTGGTGAAAAAGAAGGTTCTGGTGATTGAGC
TGATCTTTCTCTCTCTTCTCATCCTTCTGAATTACCTAAAAAGTG
Right flanking sequence: Indices 201513 -- 202012
GGTCTTTTAATGTTTTACCCCTATGTTGGATAGAATTTGAGAATTCTTGGTCCTTAAGAGTTCCA
GAAGTAGGATCAGAGACCGGCCGGCTTCGCTCATTCACCGATATGACCTTGCCTGACCCTATTTA
CCTTATTCATTCAATCCTTCAAACACAGTAAACAAAGCCGAAAGCAAGACAAGATTCATGAGACT
TAACTCCTCTCCGTCTTAGCTTAGCCGAGCTAGCTTTCTTTTATTCCTTGATTTCACTCTTTCTT
TCACAAGGTAAACTGGAGGATGATTCTTTCACTCTTTGACTCTCAGGTAAAGGTTCTGAATCAGT
CTCTTCTGAAAAGAAGAGGGCGGAGGGGGTTCTGGAATGACTAAAGCACTACTAAACTAAAAGGG
GCAGGGAAAGCCACAGGCAAGTGAACGGATTGACTAAGCCAATCATGAATTGAATGACCACTTAA
GGAACCGGCTAGGCTAAGAAGAGCAGCCAAAGGCACAAGGAATAC
Found at i:209334 original size:18 final size:19
Alignment explanation
Indices: 209311--209346 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
209301 TGCTAATGCT
209311 GATTCC-TCTTTTCTTTCA
1 GATTCCGTCTTTTCTTTCA
209329 GATTCCGTCTTTTCTTTC
1 GATTCCGTCTTTTCTTTC
209347 CCTAATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.08, C:0.28, G:0.08, T:0.56
Consensus pattern (19 bp):
GATTCCGTCTTTTCTTTCA
Left flanking sequence: Indices 208811 -- 209310
ATAGGAAAAGAAAGGTGAAGGAGCTCAGACAGAGTGATCGACTAGTTCCACCCGAGTTAGTTGGA
GAGGTTGGTTCAGTAGCAGTAGTTCAGTCTCATTCATCTTCTCTTGCTTGATTGAGGCTTTCCTT
GATCTTTGTCTTTTACCTTGTCCTTGTAAAGGAAGGGTCAGGAAAGAAGAGATGAGAGACCCTAA
GTCAAGCAAGTCCAGGCCAGGACACAGGGCAGAAAGAAGATCCTTTAACTACCTATTTACAGACA
GAGTGAAAGAAGGTTCAGGTAGTAAAGAAGAGAGAACAGAGAAGTAGCGAAGCCAGCCCCTTTAC
CCTTTACCGTTCAATCCAGTAATAAAGTAGAGGAAAAGAAGAAAAATGAATGAATAAACTAAGTA
GTGAGAGGAACGAAGCAACACGAAACCATATAGGTGCAGGAGCGAACGAAGCAACGAGACCAAGA
GGGAGAGGATCAGAGGATAGGTTCCGTCGAATGAATGCTAATGCT
Right flanking sequence: Indices 209347 -- 209846
CCTAATTTCACTGTAAATAAACTAACTCTCATTAAGCTTTCTTTCCTCCTTACTCTAGAACTAGA
AAGGAAGTAAGGATAAAGAATTAATCTTGCCGGAGTTCAGTTTCATCTGGCTTTAGGCTTTCTTC
TTTCACAGTAAAGGCTATTAGGATAGGTTATACAGAGTGCAAGGAGAATGAATCTCTCTCTTTTC
TAAAGAAAGGTTACGGAGTTCAGGAAGAAGACAAGAATACAACAATATGCTTTACCTTGTGTAAG
TAAGAAGAAGGTGAATGAGTATAAGTCAGTAAGTAAGTAAGTAAGTAGCTCATGGAGAAAGAGAA
GTAGTTCAACAACCAACTCTTGTGGTTACAGGAGAGTCAGTCAATTCATTAGCTGCAGCGGCTTT
ACCGAGTAAAAGAAGGTGAAGGGTATCGGTTTCTTCTCATCCTGCCTATTTACCGAGTGTTTCAG
TTCAAAAAGGTGAATGAGGTTACAGTGAAAGAAAAGAGAACGAAT
Found at i:210788 original size:28 final size:26
Alignment explanation
Indices: 210756--210809 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 26
210746 CTTTGTTCTT
210756 GTAAGTTAATCAATAAGTAGATAGAATA
1 GTAAGTTAATCAATAAGTA-ATA-AATA
*
210784 GTAAGTTAATCAGTAAGTAATAAATA
1 GTAAGTTAATCAATAAGTAATAAATA
210810 ATACTCTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 4 0.16
27 3 0.12
28 18 0.72
ACGTcount: A:0.50, C:0.04, G:0.17, T:0.30
Consensus pattern (26 bp):
GTAAGTTAATCAATAAGTAATAAATA
Left flanking sequence: Indices 210256 -- 210755
TCTCATTAATCTTTAGTCTGTCTTTACTTGTTCAAGAATCAATAGATAGAGGAATGAATCTTGTT
ACAGTTTAATCCGGAACAGCTTATTGAGTTTACCCTAGTACTCGGTAAAAGAATCAGAGAATCCT
TGAGGCTTTACAGAAGGGAGAGAGCTTGATTGACCTGATTCCTTTATTACTATTCGGGAGAGGTA
AAGAAAGGAGTAGTTTGGCCTGTGATTCTTTTCTTACTCTTAATCAATAAGTAATAGAATCGGAG
TTATTGAGTTTACCGAGGGAACTAAGAAGAAGGAAGGGAATACATACCATAAAAGGAATTCAATT
AGTCTAACGAATAGGAGGTAGGAAGTCCGTACACGAGAGTCAAGTCAATTCATTAGCAGCAGCCG
ACCAGGGCAATCTCGTTCCGGTGAAGAAGTAGCTCAGGCAGAAAATCCAGTATATAAAGAGTTAG
TTCTAAGGTAAGGAGTTCCATTAAGTTATAATACTCTTTGTTCTT
Right flanking sequence: Indices 210810 -- 211309
ATACTCTTGGTCGTTACCCCTAAGTAAGTAGTTTCGGCTTTCCTTTCCTTCCCTTGGTTACAGTC
TTCTGGTAAATGAATAGAATATGTATGAATTTCTTACTATGCTTTATTTATTGCCTTGGGTTTAA
AAGAAGAATAGTAGGGACAAGAAGTTCAGTTCGTAACCTCTCTTTCTTTCGGTCTTGTTTACTGC
TGTGTTTGAATAACTTACCTTAAGAATAACAGATGGTCATGTTAGGGAGGAGAGTAAGAGGTGCC
GGTTTCTTCTTCCTTTGTTTATTCTATTAGGAAGAGAATGAATAAGTAGTTCAGTCAGGAGTTTA
GCAAGTTGTAGAGAATGAGTATGAGTCTTTCATTTGAGAATTAATTAATAGAAAGAATAGAGAAT
TGCAGGGGAAGGTTCGGCCGGCACTTTACCTTCTTTAAGAGTTCTTACTCAATACCTCTCTTAGT
CTGTCTCCTTTAAAAGACTGTAAACAAAGATAGTTCGAAGAAGGA
Found at i:216786 original size:29 final size:29
Alignment explanation
Indices: 216744--216830 Score: 149
Period size: 29 Copynumber: 3.0 Consensus size: 29
216734 ATGGGCAGGA
216744 GTGAAAGAGCTCGACCGGTAGGGAGAGGG
1 GTGAAAGAGCTCGACCGGTAGGGAGAGGG
216773 GTGAAAGAGCTCGACCGGTAGGGAGAGGG
1 GTGAAAGAGCTCGACCGGTAGGGAGAGGG
**
216802 GTGAAAGAGCTCGACC-AAAGGGAGAGGG
1 GTGAAAGAGCTCGACCGGTAGGGAGAGGG
216830 G
1 G
216831 CGAAGACCTG
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 11 0.20
29 45 0.80
ACGTcount: A:0.30, C:0.14, G:0.47, T:0.09
Consensus pattern (29 bp):
GTGAAAGAGCTCGACCGGTAGGGAGAGGG
Left flanking sequence: Indices 216244 -- 216743
GGCGTCAGGGAAGGTGTTCCGGTTTCGGAGTTCTGTCTCTTTAACATTACCTATAAACCTCAAAA
GACGGGAGGGGCCAATCAGTCTCATTCTTCTTTCGTCCTGACTTCGGAAAGAAAAGAGAGAGAGA
CCGCCGAGTTCAACACCTATTCCATTCTATTTACCTTGTGAAATGAAAGACAAAATAGGGAGAGG
TTGACAAGAACTTCAATAGAATAACTCATAACAGATGGTAATATCGGAAAAGGAAAGAAAAGAGC
TACTTAATAATATGTATGTATGCTTTACCTTGTTTACTGTTCAAGAAAGAATAACTCACAAGAAC
AGAAGGAGAAGGGTTGAGGTTCAGTCTCTTTAATTACCGAATGATAGAATAAGAAGGTGAACGAA
CGAGAGAATAGGAAGAGTAGAAGAAAGAATCAGTAGTCTTGACTTTCAACACTAATAAGGGATCA
AGAATATGCTTTACGGGGGGAAATCGGGGAAGGGAATGGGCAGGA
Right flanking sequence: Indices 216831 -- 217330
CGAAGACCTGAGACCCTACGGGCGAAGAGGTGAAGACGCTCGACGAGAAAAGAAAAGGGAGAGGG
GCGAAGCCCTGAGACCCGTAGGGCGAAGAGGTTCAAGAGTGAGACCAAAGGGAGAGGGGTGAAAC
AGCGAGACCGGTAGGGAGAGGGGAAGGCAATGCGTGAGACCGATAGGTTCATGGGCAGGATTCGT
TCACTCTTATTCTTGTTTCGTCTTTCCTTTCAACACTTGAAGGAGAATGAATCGTTAGTCTTTCC
TTTCTTACAGGAGAGTAAAAGAGTGAAATCAGTCGTCTTCATAAGGAGTGTTTACAGTCTCATTC
ATCTTTCATTTTCTTCTTCAATCAAACACCTATTACCGAGTTCAAGAAGGGACAAGTTATTGATC
GTTAATCTTTCTTACAGGAAATAGCTGATGAAAACAAGAGCAAGAGGAAAGAATGCATCGGAAAG
GGGCGAAGCTGTGAGACCGGTAGGGAGAGTCGTCTTCATCTTTCG
Found at i:216845 original size:28 final size:28
Alignment explanation
Indices: 216763--216845 Score: 69
Period size: 29 Copynumber: 2.9 Consensus size: 28
216753 CTCGACCGGT
* * * **
216763 AGGGAGAGGGGTGAAAGAGCTCGACCGGT
1 AGGGAGAGGGGCGAAAGACCTAGACC-AA
* * *
216792 AGGGAGAGGGGTGAAAGAGCTCGACCAA
1 AGGGAGAGGGGCGAAAGACCTAGACCAA
216820 AGGGAGAGGGGCG-AAGACCTGAGACC
1 AGGGAGAGGGGCGAAAGACCT-AGACC
216846 CTACGGGCGA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 6 0.12
28 16 0.33
29 26 0.54
ACGTcount: A:0.31, C:0.16, G:0.46, T:0.07
Consensus pattern (28 bp):
AGGGAGAGGGGCGAAAGACCTAGACCAA
Left flanking sequence: Indices 216263 -- 216762
CGGTTTCGGAGTTCTGTCTCTTTAACATTACCTATAAACCTCAAAAGACGGGAGGGGCCAATCAG
TCTCATTCTTCTTTCGTCCTGACTTCGGAAAGAAAAGAGAGAGAGACCGCCGAGTTCAACACCTA
TTCCATTCTATTTACCTTGTGAAATGAAAGACAAAATAGGGAGAGGTTGACAAGAACTTCAATAG
AATAACTCATAACAGATGGTAATATCGGAAAAGGAAAGAAAAGAGCTACTTAATAATATGTATGT
ATGCTTTACCTTGTTTACTGTTCAAGAAAGAATAACTCACAAGAACAGAAGGAGAAGGGTTGAGG
TTCAGTCTCTTTAATTACCGAATGATAGAATAAGAAGGTGAACGAACGAGAGAATAGGAAGAGTA
GAAGAAAGAATCAGTAGTCTTGACTTTCAACACTAATAAGGGATCAAGAATATGCTTTACGGGGG
GAAATCGGGGAAGGGAATGGGCAGGAGTGAAAGAGCTCGACCGGT
Right flanking sequence: Indices 216846 -- 217345
CTACGGGCGAAGAGGTGAAGACGCTCGACGAGAAAAGAAAAGGGAGAGGGGCGAAGCCCTGAGAC
CCGTAGGGCGAAGAGGTTCAAGAGTGAGACCAAAGGGAGAGGGGTGAAACAGCGAGACCGGTAGG
GAGAGGGGAAGGCAATGCGTGAGACCGATAGGTTCATGGGCAGGATTCGTTCACTCTTATTCTTG
TTTCGTCTTTCCTTTCAACACTTGAAGGAGAATGAATCGTTAGTCTTTCCTTTCTTACAGGAGAG
TAAAAGAGTGAAATCAGTCGTCTTCATAAGGAGTGTTTACAGTCTCATTCATCTTTCATTTTCTT
CTTCAATCAAACACCTATTACCGAGTTCAAGAAGGGACAAGTTATTGATCGTTAATCTTTCTTAC
AGGAAATAGCTGATGAAAACAAGAGCAAGAGGAAAGAATGCATCGGAAAGGGGCGAAGCTGTGAG
ACCGGTAGGGAGAGTCGTCTTCATCTTTCGTCTCCCTGAACTGTA
Found at i:216863 original size:58 final size:57
Alignment explanation
Indices: 216748--216954 Score: 143
Period size: 66 Copynumber: 3.4 Consensus size: 57
216738 GCAGGAGTGA
** * * * * * *
216748 AAGAGCTCGACCGGTAGGGAGAGGGGTGAAAGAGCT-CGACCGGTAGGGAG-AGGGGTG
1 AAGAGCTCGACC-AAAGGGAGAGGGGCG-AAGACCTGAGACCCGTAGGGCGAAGAGGTG
216805 AAAGAGCTCGACCAAAGGGAGAGGGGCGAAGACCTGAGACCC-TACGGGCGAAGAGGTG
1 -AAGAGCTCGACCAAAGGGAGAGGGGCGAAGACCTGAGACCCGTA-GGGCGAAGAGGTG
* *
216863 AAGACGCTCGACGAGAAAAGAAAAGGGAGAGGGGCGAAGCCCTGAGACCCGTAGGGCGAAGAGGT
1 AAGA-GCTCGAC--------CAAAGGGAGAGGGGCGAAGACCTGAGACCCGTAGGGCGAAGAGG-
*
216928 TC
56 TG
*
216930 AAGAG-TGAGACCAAAGGGAGAGGGG
1 AAGAGCT-CGACCAAAGGGAGAGGGG
216955 TGAAACAGCG
Statistics
Matches: 121, Mismatches: 13, Indels: 30
0.74 0.08 0.18
Matches are distributed among these distances:
56 8 0.07
57 24 0.20
58 38 0.31
65 1 0.01
66 43 0.36
67 7 0.06
ACGTcount: A:0.32, C:0.17, G:0.43, T:0.08
Consensus pattern (57 bp):
AAGAGCTCGACCAAAGGGAGAGGGGCGAAGACCTGAGACCCGTAGGGCGAAGAGGTG
Left flanking sequence: Indices 216248 -- 216747
TCAGGGAAGGTGTTCCGGTTTCGGAGTTCTGTCTCTTTAACATTACCTATAAACCTCAAAAGACG
GGAGGGGCCAATCAGTCTCATTCTTCTTTCGTCCTGACTTCGGAAAGAAAAGAGAGAGAGACCGC
CGAGTTCAACACCTATTCCATTCTATTTACCTTGTGAAATGAAAGACAAAATAGGGAGAGGTTGA
CAAGAACTTCAATAGAATAACTCATAACAGATGGTAATATCGGAAAAGGAAAGAAAAGAGCTACT
TAATAATATGTATGTATGCTTTACCTTGTTTACTGTTCAAGAAAGAATAACTCACAAGAACAGAA
GGAGAAGGGTTGAGGTTCAGTCTCTTTAATTACCGAATGATAGAATAAGAAGGTGAACGAACGAG
AGAATAGGAAGAGTAGAAGAAAGAATCAGTAGTCTTGACTTTCAACACTAATAAGGGATCAAGAA
TATGCTTTACGGGGGGAAATCGGGGAAGGGAATGGGCAGGAGTGA
Right flanking sequence: Indices 216955 -- 217454
TGAAACAGCGAGACCGGTAGGGAGAGGGGAAGGCAATGCGTGAGACCGATAGGTTCATGGGCAGG
ATTCGTTCACTCTTATTCTTGTTTCGTCTTTCCTTTCAACACTTGAAGGAGAATGAATCGTTAGT
CTTTCCTTTCTTACAGGAGAGTAAAAGAGTGAAATCAGTCGTCTTCATAAGGAGTGTTTACAGTC
TCATTCATCTTTCATTTTCTTCTTCAATCAAACACCTATTACCGAGTTCAAGAAGGGACAAGTTA
TTGATCGTTAATCTTTCTTACAGGAAATAGCTGATGAAAACAAGAGCAAGAGGAAAGAATGCATC
GGAAAGGGGCGAAGCTGTGAGACCGGTAGGGAGAGTCGTCTTCATCTTTCGTCTCCCTGAACTGT
AAACTCTCATTCATCTTTCGGATTTCATTCCTGTTCCGGAGCTCGACTGTAAAGGACAGGTTCAT
GAGCGAAGCAACTCGACCGAGAGGGAGAGGAGGACGTTGATCGAG
Found at i:222019 original size:32 final size:32
Alignment explanation
Indices: 221925--222025 Score: 118
Period size: 32 Copynumber: 3.2 Consensus size: 32
221915 GAATTGTAAG
* *
221925 ACCGAGTTGTAGAGGTTCAGTGGAATTG-TTCA
1 ACCGAGTTGAAGAGGTTCAGTGGAATTGCTT-T
*
221957 ACC-A-TAAAGAAGAGGTTCAGTGGAATTGCTTT
1 ACCGAGT--TGAAGAGGTTCAGTGGAATTGCTTT
*
221989 ACCGAGTTGGAGAGGTTCAGTGGAATTGCTTT
1 ACCGAGTTGAAGAGGTTCAGTGGAATTGCTTT
222021 ACCGA
1 ACCGA
222026 TAGGTGAATG
Statistics
Matches: 59, Mismatches: 5, Indels: 10
0.80 0.07 0.14
Matches are distributed among these distances:
30 1 0.02
31 1 0.02
32 53 0.90
33 3 0.05
34 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.29
Consensus pattern (32 bp):
ACCGAGTTGAAGAGGTTCAGTGGAATTGCTTT
Left flanking sequence: Indices 221425 -- 221924
TTGAATTTGATTCTGAATGAATGAATAATAGGGTCAGGTAATAAAAAGGGACAGGTTCAGTAGCT
AATTCATTGAAAGAATAAATAGGTGAAGATAGGTGATTGAGTGAAGGAGAAAGAATCAATCAATA
GGGGAAGGAGCAAATCTTGATTGAATTTGTTGAGTCTTTCAAGCAGAATCAAATGAAAGAGAAGA
GACCGACAAACACCTATTCTATTCTATTTACCTCAATAAATAAGGGAAGGGAATAGAGAGGAGAA
TGCATCTTTCATTTTCTTCTCCCAGGAAAAGGTTTGAGGTCTCTTTCATTTTCTTTGTTTACATT
ACAGTTAAAGAAGGGAGAGGAAAGAAAAGATTCGAGACAGAGGTTACAGAATAGGTGAAAGAAGA
AATAGGAGAAAGAGCAGTTCAGGATCAAGAACCAAGCAGTTTAGAGCCGGAGAGTGAGACCAATA
AGTGAAGGAGACTGAATAAATGGGTTCAGGCAATGGAATTGTAAG
Right flanking sequence: Indices 222026 -- 222525
TAGGTGAATGAGCGAAGCTGGGAAGAAAAGGTTATTCCCTCCTATTGGCTGGCTCACCCTTGTAT
CAGGCCCTGCTTGCTACGGCCTATACTATACATGATTGGGCCATGACGGTTTGTTTTGGCAAGGT
ATAGTTTGTTTGATTTTGACCTATCTATAACCAGACTCAATCGTTGCAGTACTTTCGAATCAAGA
TCTCATTCTTTTCTTTTTCTTTCAAGGCAGCGACCGATTCCTTACCTGTTATTCTGACGTCCTGT
ATGATTGCAGGGTTGTTCGGGAATCCCTTTGCAACTTCCTGGACGTTCATACATACTTATTCTTT
AGTCTTTCAATTACAATAGAGTTTCTAATAAATCAAGGAGGTCATCGGTTGTAACGTTCACGAAG
GGTCAACCCCTCGGCTCGGATTTTCTCGTTCTTGGCCTCTATTCATTCACACTGACACATCATAT
GCTTGTGTGGATAGCTGCTGAGAGGGTGTATGGCACGACGAAGCT
Found at i:225424 original size:21 final size:21
Alignment explanation
Indices: 225398--225439 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
225388 GGCGCCACTC
225398 TCTGAGTTATTCCAGCTTCTT
1 TCTGAGTTATTCCAGCTTCTT
225419 TCTGAGTTATTCCAGCTTCTT
1 TCTGAGTTATTCCAGCTTCTT
225440 CATGATTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.48
Consensus pattern (21 bp):
TCTGAGTTATTCCAGCTTCTT
Left flanking sequence: Indices 224898 -- 225397
GTGCGAGCCACCCGAGAAGCAAGCTATTACAGCCAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCA
AAGCTCGAGATAAGATCGAAGAAGGGGCCAGGCTCCCGGTGGAGCAGAGGAGACGGTTAGGATAA
CGAACTTGAAACGCGGAGCCCGAGCGGCCGGCGAGCAAGTGGTTAGTGGCCAATAGCGCCCTAGT
TGATGGCATTCCTCTCCGCGGCTGGCACTCGAGGAACCACGGGGCACTCCATACAGAGCAAGCAA
GTCTTCGGGATGAGACGCCCGCGCAAGGACCTCAATTCTCATTAGGAGGTCGAACCAAGGACCTA
TAGAAGTCGGGGCTACCCCCTCCCCATGGCCAAACAGTGTCCTGAGGAAGGAGTTTAGAGGCCTT
ATAGTAGCACGGACTGATTTTTCTTTATAGGTCATGCGAAGGGGGCCAGTCCAAGATCCTACTCT
TGCTCTACAAAGACAAGAGACGCTCTCAACGCCTAGGCGCCACTC
Right flanking sequence: Indices 225440 -- 225939
CATGATTTCGTGCCGCGAAACAAAAGGGCCGTCTCAGCAGAAGGAGAAGGAAGGACCTGCAACGG
CAGAGACTACTGACCCTCTTCTTGTTCCTAGCCGGCTGTTACGAGTCCGGGAAGGAATCCTAAAT
ATAAGAAGGGATCCCTCAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCTCCTCTCTT
CCCGGTCAAGATAGATGGGAACCCTATCTTGGAAAAGCCATAACCAGCCTCTTTCTTTATCTACG
TACACCTTTGTTTCAAGGTGGGGCCGCCCTTCCTCCTGCTAATCCGGCCATTTCCGAACCTTTCT
TTCCCACCCCATTCAATGGAAGACTGATCCATTCTTGCGATTCCCACAGCCTCTTCGCCCTACGG
GTCTCACAATTCCATTGCCTGACGCTTATTAGAAAATCAAAGACTGAAAAACGAGGGTTCCCCGA
CGCTCGGCTAAATTGGTTTAATGATCTCTTTCTTCGATAGGACGG
Found at i:232548 original size:35 final size:35
Alignment explanation
Indices: 232509--232626 Score: 146
Period size: 35 Copynumber: 3.3 Consensus size: 35
232499 ACCTCTACAA
232509 CTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCC
1 CTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCC
** ** ** * **
232544 CTCGGTTTCACAATTTCATTCCCTGAACCTCTACAA
1 CTCGGTTTCACAGCTTCGCT-CCTGCCCCTCTCCCC
232580 CTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCC
1 CTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCC
232615 CTCGGTTTCACA
1 CTCGGTTTCACA
232627 ATTTCATTCC
Statistics
Matches: 64, Mismatches: 18, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
35 38 0.59
36 26 0.41
ACGTcount: A:0.13, C:0.44, G:0.13, T:0.31
Consensus pattern (35 bp):
CTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCC
Left flanking sequence: Indices 232009 -- 232508
GATGAATGAGGGTGAACCTATCCTTTCTTTACAAAGAAGGGAGAGTCAATTCCTTGCAGCTCCTT
TCCCTGTCGGTCTCGCAGCTTCGCTTATTCGCCTCGTAAACTCGGTCTCACAATTCCATTGCCTG
AACCTGTCTGTCGGTTTCATTGCTTCGCTCCTGAACTACTTCCTTCACCAGATGGAACTCCTACA
CCTTATACGATATTCCCTTACAGGAGAGGAAATTCATTAAATCCTCTAACTCTATCTAAAAGAAG
AACGAAGAAGAAAATGAGAATCAGGTCAAGCTCAATCACCTGATGGAACTGTCTGTAAAGTGGCT
GGCTGAGCTCCGGAACCTATCTGTAAACTCGGTAAAGCAAAAGCACTAAGTAAGTTCTTTCACAA
ACAAGGGGGAACTAGGTAAGCTGGATGAGAAGAGGGTAAAGCTCCGTAACCTTTCGACTCTATTA
CATTACCTGACCGGAACCGATATTCCCTTCCCTGAACCTCTACAA
Right flanking sequence: Indices 232627 -- 233126
ATTTCATTCCCTGAACCTTATACGCTAGTCCCTTATACAGGAGAGTCAACTCATTCAATCCGGAC
GGAACCTGAACCGGACCCTTTATCAATCTTCTGAACCTGAACCTCCTTTTCCTATGGATTCTTTC
TCCTTTTCTTTGATGATATTCCCTTAATCAATTAATTAGCTGCTTTTCAAGCCGAAACGAGAGAT
TCCTGAGAGTGAACTGTCGGACTCATTATCCTGATCCTACTGATTGAACAGTAAACTCCGATCCT
CTCTCTTGCGCTCTCGTTGCTTCGCTCCTCTCCCTGATTGAACTCGGTAAAGCTCCTGAGCCTGA
TTGAACTCGGTAAGTAAAGGGGCTGGCGGAGAAGAAGGTAAAGCTGCTTCACCTATTTATTCTTG
AACTGTAAACAAATGAAAGGATGTTCGAAAGATGAATTCATTCTTCTTCACTCCTGAACTACTGA
ACTCACCTTCTTGATCTTCTCCTTCACCTATTTATTGAGGAACTG
Found at i:232584 original size:36 final size:36
Alignment explanation
Indices: 232491--232644 Score: 132
Period size: 35 Copynumber: 4.3 Consensus size: 36
232481 CGATATTCCC
* *
232491 TTCCCTGAACCTCTACAACTCGGTTTCACAGCTTCG
1 TTCCCTGAACCTCTACAACTCGGTTTCACAACTTCA
* ** * ** *
232527 CT-CCTGCCCCTCTCCCCCTCGGTTTCACAATTTCA
1 TTCCCTGAACCTCTACAACTCGGTTTCACAACTTCA
* *
232562 TTCCCTGAACCTCTACAACTCGGTTTCACAGCTTCG
1 TTCCCTGAACCTCTACAACTCGGTTTCACAACTTCA
* ** * ** *
232598 CT-CCTGCCCCTCTCCCCCTCGGTTTCACAATTTCA
1 TTCCCTGAACCTCTACAACTCGGTTTCACAACTTCA
232633 TTCCCTGAACCT
1 TTCCCTGAACCT
232645 TATACGCTAG
Statistics
Matches: 86, Mismatches: 30, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
35 52 0.60
36 34 0.40
ACGTcount: A:0.16, C:0.42, G:0.11, T:0.31
Consensus pattern (36 bp):
TTCCCTGAACCTCTACAACTCGGTTTCACAACTTCA
Left flanking sequence: Indices 231991 -- 232490
TTGAAAGACGAAACTCAAGATGAATGAGGGTGAACCTATCCTTTCTTTACAAAGAAGGGAGAGTC
AATTCCTTGCAGCTCCTTTCCCTGTCGGTCTCGCAGCTTCGCTTATTCGCCTCGTAAACTCGGTC
TCACAATTCCATTGCCTGAACCTGTCTGTCGGTTTCATTGCTTCGCTCCTGAACTACTTCCTTCA
CCAGATGGAACTCCTACACCTTATACGATATTCCCTTACAGGAGAGGAAATTCATTAAATCCTCT
AACTCTATCTAAAAGAAGAACGAAGAAGAAAATGAGAATCAGGTCAAGCTCAATCACCTGATGGA
ACTGTCTGTAAAGTGGCTGGCTGAGCTCCGGAACCTATCTGTAAACTCGGTAAAGCAAAAGCACT
AAGTAAGTTCTTTCACAAACAAGGGGGAACTAGGTAAGCTGGATGAGAAGAGGGTAAAGCTCCGT
AACCTTTCGACTCTATTACATTACCTGACCGGAACCGATATTCCC
Right flanking sequence: Indices 232645 -- 233144
TATACGCTAGTCCCTTATACAGGAGAGTCAACTCATTCAATCCGGACGGAACCTGAACCGGACCC
TTTATCAATCTTCTGAACCTGAACCTCCTTTTCCTATGGATTCTTTCTCCTTTTCTTTGATGATA
TTCCCTTAATCAATTAATTAGCTGCTTTTCAAGCCGAAACGAGAGATTCCTGAGAGTGAACTGTC
GGACTCATTATCCTGATCCTACTGATTGAACAGTAAACTCCGATCCTCTCTCTTGCGCTCTCGTT
GCTTCGCTCCTCTCCCTGATTGAACTCGGTAAAGCTCCTGAGCCTGATTGAACTCGGTAAGTAAA
GGGGCTGGCGGAGAAGAAGGTAAAGCTGCTTCACCTATTTATTCTTGAACTGTAAACAAATGAAA
GGATGTTCGAAAGATGAATTCATTCTTCTTCACTCCTGAACTACTGAACTCACCTTCTTGATCTT
CTCCTTCACCTATTTATTGAGGAACTGATCTTGCTTCATCCTTTC
Found at i:232607 original size:71 final size:71
Alignment explanation
Indices: 232491--232644 Score: 308
Period size: 71 Copynumber: 2.2 Consensus size: 71
232481 CGATATTCCC
232491 TTCCCTGAACCTCTACAACTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCCCTCGGTTTCACA
1 TTCCCTGAACCTCTACAACTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCCCTCGGTTTCACA
232556 ATTTCA
66 ATTTCA
232562 TTCCCTGAACCTCTACAACTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCCCTCGGTTTCACA
1 TTCCCTGAACCTCTACAACTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCCCTCGGTTTCACA
232627 ATTTCA
66 ATTTCA
232633 TTCCCTGAACCT
1 TTCCCTGAACCT
232645 TATACGCTAG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 83 1.00
ACGTcount: A:0.16, C:0.42, G:0.11, T:0.31
Consensus pattern (71 bp):
TTCCCTGAACCTCTACAACTCGGTTTCACAGCTTCGCTCCTGCCCCTCTCCCCCTCGGTTTCACA
ATTTCA
Left flanking sequence: Indices 231991 -- 232490
TTGAAAGACGAAACTCAAGATGAATGAGGGTGAACCTATCCTTTCTTTACAAAGAAGGGAGAGTC
AATTCCTTGCAGCTCCTTTCCCTGTCGGTCTCGCAGCTTCGCTTATTCGCCTCGTAAACTCGGTC
TCACAATTCCATTGCCTGAACCTGTCTGTCGGTTTCATTGCTTCGCTCCTGAACTACTTCCTTCA
CCAGATGGAACTCCTACACCTTATACGATATTCCCTTACAGGAGAGGAAATTCATTAAATCCTCT
AACTCTATCTAAAAGAAGAACGAAGAAGAAAATGAGAATCAGGTCAAGCTCAATCACCTGATGGA
ACTGTCTGTAAAGTGGCTGGCTGAGCTCCGGAACCTATCTGTAAACTCGGTAAAGCAAAAGCACT
AAGTAAGTTCTTTCACAAACAAGGGGGAACTAGGTAAGCTGGATGAGAAGAGGGTAAAGCTCCGT
AACCTTTCGACTCTATTACATTACCTGACCGGAACCGATATTCCC
Right flanking sequence: Indices 232645 -- 233144
TATACGCTAGTCCCTTATACAGGAGAGTCAACTCATTCAATCCGGACGGAACCTGAACCGGACCC
TTTATCAATCTTCTGAACCTGAACCTCCTTTTCCTATGGATTCTTTCTCCTTTTCTTTGATGATA
TTCCCTTAATCAATTAATTAGCTGCTTTTCAAGCCGAAACGAGAGATTCCTGAGAGTGAACTGTC
GGACTCATTATCCTGATCCTACTGATTGAACAGTAAACTCCGATCCTCTCTCTTGCGCTCTCGTT
GCTTCGCTCCTCTCCCTGATTGAACTCGGTAAAGCTCCTGAGCCTGATTGAACTCGGTAAGTAAA
GGGGCTGGCGGAGAAGAAGGTAAAGCTGCTTCACCTATTTATTCTTGAACTGTAAACAAATGAAA
GGATGTTCGAAAGATGAATTCATTCTTCTTCACTCCTGAACTACTGAACTCACCTTCTTGATCTT
CTCCTTCACCTATTTATTGAGGAACTGATCTTGCTTCATCCTTTC
Found at i:268156 original size:29 final size:29
Alignment explanation
Indices: 268114--268274 Score: 322
Period size: 29 Copynumber: 5.6 Consensus size: 29
268104 TACACACAGC
268114 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
1 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
268143 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
1 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
268172 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
1 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
268201 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
1 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
268230 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
1 TTCTCCCCTCTCCTTTACAGTCGAGCAGT
268259 TTCTCCCCTCTCCTTT
1 TTCTCCCCTCTCCTTT
268275 GGCAAGAAGA
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 132 1.00
ACGTcount: A:0.12, C:0.39, G:0.12, T:0.36
Consensus pattern (29 bp):
TTCTCCCCTCTCCTTTACAGTCGAGCAGT
Left flanking sequence: Indices 267614 -- 268113
GTAATGGCTGATCATTAATTTCATTCTATTCAGTTTTTAAGACCTCACTAATCAGGCTTACACTT
TTGAGTGAATAATGAATTCACCCCCGGATGAAGAGCAAATCTCCCCTCTTACTAAACCATGGGGA
GCCCCGAGTAGTTTACCGGGCAAATTGAGTTGTCGTGACGATACCCTTTCTTAGTGTAAGATCGG
AAAAGACTGATATCTTCATCACGAGACTGATCGGATCCGCCGTAGACACCCGAGAGACCTCCACA
AGGCAGACTCAAAGAGTAAGAGGACAACAAGCAAAGAGTGTTGCTTTCATTTCTTTATTGAGATT
GAAATCAAGTTCTTTAAAAAGAAAGGGGAGAGGTATAATGCACACAGGCCAAGTCAAGAAAAGGA
CTTCCTTACTTGATTTTGAATAATAGTCAAGACCGAGGTTCAGGTTAATAAATCAGGTAAATAGG
TCAACAAGCAGCTAATGAATGGACGGACTCTCCTTTACACACAGC
Right flanking sequence: Indices 268275 -- 268774
GGCAAGAAGATATTCCTTCGGAACCCTCTCCTTTGCATCATCAAGTCGACGTTCAGTTTACTTTT
TCGATTAGGAACTCTTAGTCGAGAGCTGATGGCGAGATAGATCGATTTAGTGTTCGGGGGGAAAG
AGAAAAAGAGAGGAACCACCGCCCAATGGTGCTTTTACGAAAGAGCTTAACTAATAGGGCCTTTT
TCTAGATGTTGAAGAGGTAGGTTCAGTCAGGGGCTAATACCTTCTCGACACTATCGAACCGGAAA
TCCACTCTCAATCGCTCTTTTTAGTGGGGAGGAATTGTTTTCGTATCCTGGACTTAAGTAAGGAA
GGAAAAAAGTACCCTATCTGCCTTGTTGTGATAGGGTGGGCATAGTTCTTTGTTTTCAAGTCAAG
CTCCGTATCTATCCCTCTCTCTTTTTAGGTTGGCATAACAAAGTCAAGAGAGTGCCAAGAAACAA
AACATACCCCACTCACTTTTGGAAGGTTCGGGATCGTCAGGGAGC
Found at i:270236 original size:14 final size:14
Alignment explanation
Indices: 270217--270243 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
270207 GCAAACCACT
270217 CACTAATACTTGAC
1 CACTAATACTTGAC
270231 CACTAATACTTGA
1 CACTAATACTTGA
270244 ACTACCCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (14 bp):
CACTAATACTTGAC
Left flanking sequence: Indices 269717 -- 270216
TGGGCTTCTTTCGTCTCCCTTCTTTCACTCTGTCTTCGTCTTCGCCCCTCTCCTTTGTCGAGCGT
CTTCGCCTCTTCGCCCTACGGGTCTCAGGGCTTCGCCCCTGAACCAGATTGAACAAGGTAAAAAA
GAGAAAGACTCCTTCTTAATTATCCTTCCCCTCCTCCTTTGTTTGGGGACTGATTGAACTCCTAC
ACCTATCGGTCTCACGGCTTCGCTCAATAACCTGTCGGTCTCACACAATTCCATTGTCTCTCCTT
TCTCAACTATTAGTACGGGAGCCCTTTGTATATATATAAAGGTAAGGCTCTTCTGCTATCAATTC
AACCGAAAGAAAGACTAAAACCCTTGGTGGCAAACGGCCCCCCTAAAACCTACGGTACACTCAAA
CCCCTTACACTAGGAACAGGTACATAAGGAACGGTTACATTCAGAACAGTTACTACTACTAGGAA
CAGTTACACCGGAAACATCGGTCGAAACATTCTCCGCAAACCACT
Right flanking sequence: Indices 270244 -- 270743
ACTACCCTTTCTTTGCTTTACGTACTCGGTGAAGAGGAAAATGCAAGCTTTCTGGAATTACTGAT
TAACATGGTTAGGTGAGCAACCGGGCCTCCCATCATTTGAAGATTCCGCCGGGACTTTGCTTGGT
CTTTGGTATATTAGATATAGAATCTAACCATTTCGCAGGTTAGGATCGACTCTTTCTCACGCAGC
TTGATATCCGTAGTCTTGTCTGTCGAATTCTCTGTAATGGTCGACACCGTCCTCTTCGTCGATTA
GCTTTCTTGCCCTACTTATTTGCCTTCCTTCCTGTATTCCTGCGCTTAGAGGTTGTAGCGACTTG
GGGAGCATAGGGCAGGGAATGAGTAAACTAATGTACGTTGGCTTTAATGAGTTGGAGCAAGCTAT
GTAGGAATGGAGTTACAGGCAATTTCTTGCAAACCCCGTTCGTTATCAAAATGGAAGAAGAAAGA
AAGAGGTGAGTGATCCGAATTTAGAACCTCGATGATAATGGGATC
Found at i:272486 original size:16 final size:16
Alignment explanation
Indices: 272462--272492 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
272452 CCGAGTCTTT
*
272462 GAAGGGAAAGATCAGA
1 GAAGAGAAAGATCAGA
272478 GAAGAGAAAGATCAG
1 GAAGAGAAAGATCAG
272493 GCAATGGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.35, T:0.06
Consensus pattern (16 bp):
GAAGAGAAAGATCAGA
Left flanking sequence: Indices 271962 -- 272461
ATTCTTGGGTGGAATCTCGTTCGCAGCGTAGCAGCACACAGCTCACCTCTTCAGACTCTGAACCT
ATCGGCCCCAGTATACTGATTTGGCTACGAAACTACGCTATTCAATTGTTAGGGAGGTCTTTGAC
TCCTTTGCTTAACGAAAGAAAGAGGAATAAGGAAAGCATTCTAACAAAGACAGGTCAGCTAATGA
TTCCGTTGTGGCTACTAAGCTATTTCTTTGGAAAGCTCCTACTAATTGGGTGAAGCTTTGATTCG
TTTACTGTCTTTGAAGGAAAGAAAGAAAGAAAAGGGAATGGAATTGTGAAACCGAGTTGGAAAGC
TCCTACTAATTGTGTGAAGCACAGAGGAGAGGCAGTAAGTAGGGAGAGGATCAGAGAAAGAAGGT
GAAGGGGAAAGAGTGAAAGAAGGATTTCATATGCGAGTCAAGGATCATTCTTCTTTCTTCAATCA
GTCCAGCACGGAAGATGAAAACACCTATTTATTTACCGAGTCTTT
Right flanking sequence: Indices 272493 -- 272992
GCAATGGAATTATGAGACCTATAGGTAAGTCATCTCAGCCTATTTATTTACCGAGTTCAAGAAAG
GATCAGATCAGAGAAAGAATTCATCTTTCGGGTTTACAGTTCGTTCCGGAATAAATAGGAGCCGG
AGGAGAAGGAGGTTCTGTCTCATTCATCTTTCATTTGATTCTATCACAGTAAAGGAGAAAGATAA
AGGAGTTCAGGTTCAGTAGTTCAGTCTCTTGCTTTCTCTTTTCTTTGATTTACTCGACAGTAAAG
GATTTCCATTCATCTTGTCTTGCTTCAGTCTTTCTCCTTATTATTTAGAAAGGTTACGGAGAATT
CATCTTTCGGCTTTCTTTCATTCTGTTTCTGTAAAAAAAGGAGTCAGGAGTATTGCTCTTTTTCT
TTTACCTACCTTGTCTGGTTCGTTCAGTAGCTCAGGTAATACCGGTTCAGGTTCTTCTTGACGCT
TTACCGAGTGAGTGAAAGAAGGCAGGCTGGCTCGGTCAGTAGTTC
Found at i:278065 original size:70 final size:70
Alignment explanation
Indices: 277975--278122 Score: 174
Period size: 70 Copynumber: 2.1 Consensus size: 70
277965 AATACGGGAA
** * *
277975 AGATAGAATTTCTTAACTTTCAGCGGC-TTTCCTTAGGGGAAAA-CTGCTTTTACTGTTTTACCC
1 AGATAGAATTTCTTAACTTTCAGCGGCAGCT-CTTAGGGAAAAAGGT-CTTTTACTGTTTTACCC
278038 CTATGCT
64 CTATGCT
* ** ** *
278045 GGATAGAATTTCTTTTCTTTCAGCTTCAGCTGTTAGGGAAAAAGGTCTTTTACTGTTTTACCCCT
1 AGATAGAATTTCTTAACTTTCAGCGGCAGCTCTTAGGGAAAAAGGTCTTTTACTGTTTTACCCCT
278110 ATGCT
66 ATGCT
278115 AGATAGAA
1 AGATAGAA
278123 AAGGTTTTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
70 63 0.97
71 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (70 bp):
AGATAGAATTTCTTAACTTTCAGCGGCAGCTCTTAGGGAAAAAGGTCTTTTACTGTTTTACCCCT
ATGCT
Left flanking sequence: Indices 277475 -- 277974
GTTCATGAGCTTTACTTACCTTGTTCAATCTGGTGACGGAGAAGAGAATAAATCTTTTGGCTTTC
TCTTTGTCTTGTCTCTTCTCTGTTCTTGAATGTCTTTCCTTCCTTAATGCAATAACTGCACACTG
CTTAGTATAGTTATATGACCGTCAAAAAGCTTTCCTGACTGTGAAGGAGAAAGAAGAAATCAATA
GGTGAAGGAGAATGACTAAGGAGTAGAGTCTTGACTTGAAAGACTTGAAGGGGAAGATCAAGATC
AAGAAGGAATCGATAGTCTTTCCTGACAGTGAACGATCATTGATTCTTCGATAGGATTGACTTCA
ACATTACCTCGGCCCTAAATACCTCTCTTTGATCTCAAAAAATAAGGGAAGGGTAGACTTTTATC
CAAAAAAATAGACAGAAGATAGACTGATTTCTAGTTTTTTGAGTGTTTACAGTCGAGTTCCCGAG
GGAAAGAAGGGTAAAGCATCCATTTTATCCCCAAAAATACGGGAA
Right flanking sequence: Indices 278123 -- 278622
AAGGTTTTATTGACGCTGCTGCTAAGGTGAAGGATCTTGATCAGTTAAAGAATTCATCTTGAGGA
TTTACTGACAGTTCACTCTCATTCATCTTTCGTTTCGTCTCCCTTCTCTTTCCCTTCTTTCTTTC
ACTGTCAAGTCGTCTTCAATTCTTCTTGAGTTGAGTCTTTCCTTAATAATGAATGAATTACCTTG
ACTCTCTTTTATCCCCAAAAATAGGGTAAAGATAGACTTTTTAATCAAAAAAATAAGGGGGAGAT
AGGATCATTCTAGTTTTTTGAGTGTTTACAGTCGAGTTCCAGAGGGAAATCAGGGAAAATGGACT
CTTTTATCCCTCAAAATAGGGGGGAGGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAA
AAAGGTCTTTTAATGTTTTACCCCTATGCTGGATAGAATTTCTTTTCTTTCAGCTTCAGCTGTTA
GGGAAAAAGCTCTTTTAATGTTTTACCCCTATGTTGGATAGAATA
Found at i:278551 original size:70 final size:70
Alignment explanation
Indices: 278473--278621 Score: 262
Period size: 70 Copynumber: 2.1 Consensus size: 70
278463 ATAGGGGGGA
*
278473 GGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAAGGTCTTTTAATGTTTTACCCCT
1 GGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAAGCTCTTTTAATGTTTTACCCCT
278538 ATGCT
66 ATGCT
* *
278543 GGATAGAATTTCTTTTCTTTCAGCTTCAGCTGTTAGGGAAAAAGCTCTTTTAATGTTTTACCCCT
1 GGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAAGCTCTTTTAATGTTTTACCCCT
*
278608 ATGTT
66 ATGCT
278613 GGATAGAAT
1 GGATAGAAT
278622 AAATTAATTA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 75 1.00
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (70 bp):
GGATAGAATTTCTTTTCTTTCAGCTCCAGCTATTAGGGAAAAAGCTCTTTTAATGTTTTACCCCT
ATGCT
Left flanking sequence: Indices 277973 -- 278472
AAAGATAGAATTTCTTAACTTTCAGCGGCTTTCCTTAGGGGAAAACTGCTTTTACTGTTTTACCC
CTATGCTGGATAGAATTTCTTTTCTTTCAGCTTCAGCTGTTAGGGAAAAAGGTCTTTTACTGTTT
TACCCCTATGCTAGATAGAAAAGGTTTTATTGACGCTGCTGCTAAGGTGAAGGATCTTGATCAGT
TAAAGAATTCATCTTGAGGATTTACTGACAGTTCACTCTCATTCATCTTTCGTTTCGTCTCCCTT
CTCTTTCCCTTCTTTCTTTCACTGTCAAGTCGTCTTCAATTCTTCTTGAGTTGAGTCTTTCCTTA
ATAATGAATGAATTACCTTGACTCTCTTTTATCCCCAAAAATAGGGTAAAGATAGACTTTTTAAT
CAAAAAAATAAGGGGGAGATAGGATCATTCTAGTTTTTTGAGTGTTTACAGTCGAGTTCCAGAGG
GAAATCAGGGAAAATGGACTCTTTTATCCCTCAAAATAGGGGGGA
Right flanking sequence: Indices 278622 -- 279121
AAATTAATTAATGGTCCGTCAGAGGGAAAGAAGTAGGAGTCTTTGTCTTTGTTTCGTCTCCCCTC
ACTGTAAACTCTCATTCATCTTGCATTAATCTTTCGTCTTTGTTTACAGTTCAAGAAGAAATAGG
TTCCGGAGGTAAGATCATAAGAGTTGTAGAGGTTCATGAGTAAGTCGCTGCTCGAGGAGAAAGAT
CAGATCAAGAAGCCGAGGTGTAGGAGTTCCATCTGGTTCAGTAGTTCAGTCGTCTTCCTCTTTCG
TTTCGTCTTTCCTCTCCCTTCTTTCATTCTGTAAAGGTTCTGGTTCCGGTTCAGGAGCCAAGCAG
CTTTACCTCGTTCAAGAAGAATCAATTGTCCAGTTTACCCTGTGAAATAAGGTGAAGGATTGAAT
TCATCCTGACTCAACTCAAAAGAAGAAGAATTGAGAATAAAGAACTAAAACGGACATGACACAGC
AAGTTGCTAGTACCTTCCTTCGGAAACCCCGTAATACGCCCTGAG
Found at i:281975 original size:28 final size:28
Alignment explanation
Indices: 281935--282026 Score: 166
Period size: 28 Copynumber: 3.3 Consensus size: 28
281925 TCATATAGGA
281935 AGAGGGGTGAAACAGCTCGACCAAAGGG
1 AGAGGGGTGAAACAGCTCGACCAAAGGG
281963 AGAGGGGTGAAACAGCTCGACCAAAGGG
1 AGAGGGGTGAAACAGCTCGACCAAAGGG
**
281991 AGAGGGGTGAAACAGCGAGACCAAAGGG
1 AGAGGGGTGAAACAGCTCGACCAAAGGG
282019 AGAGGGGT
1 AGAGGGGT
282027 ACTTTACAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.36, C:0.15, G:0.42, T:0.07
Consensus pattern (28 bp):
AGAGGGGTGAAACAGCTCGACCAAAGGG
Left flanking sequence: Indices 281435 -- 281934
TGCTTCTATAGATAAGGCGGAGCGTCCTTGGCTCAGCATTATAGCACATAGGGCTTCAGCGCTAC
TACAGCGCTTCGCTAACGCTCGGCTAAGTCTTGAACCTTCGCGCTGACCGTTCGCTTTCTCAGTA
GCAAAAGCTCTTCTCTTTGCCCCTTACGATGAAAGCCTTAAGCGAGAGATTTGTTGTTTTATTGC
TCCTGCTTCCTCACTGGGCTCGTCAAGCCAACTTAGCTTTTTGGTAGTTGAAACTGCGGTTGAAG
CGGACATTTCGAAATGAGAGCATCGAAGATATATATACACGGTTACGCTTACTAAAAGACTGACT
TAGGCCAGCGTGAAAGAAAGGGCGGGCACTCTCGTGTTTCAACCCCACTATACTCTGAATAAATA
GTTGTGGGGCACTGTATACTGATAGCTTCTACGATAAGCAAGTGAATGGGGGCGGTGCGTGGCGA
ACGGTTCATCAAGCCATTTCTCGCCTCAACCCCCGTCATATAGGA
Right flanking sequence: Indices 282027 -- 282526
ACTTTACAAATAGGGGGTAATTGATTCGCACCTGACTGTGATAGCCCTCTCGATACCTTATTATG
TGAGCTTTGTTACTAGTGGTCGATTTCCCGTGGCGTTATAGCCTTTTCCCAGTGCGCGAAGCCCC
AACGAAGAAGATGTTAGTGGTTTCTCATTGGGTCAATAAGCAAAATCCCTCTTTTTGTGCTACTC
CTACTCCGTCAGCGGTAAAAAGACTAAGAAAAGGCGAAGCGTTCTCTTGGTTTCCCAACCTCTTG
CTTCTAAAGGCTGCCCTCTCTCGGCTGGATGTTGTTCCAGCCTACTACGAGGATCCCGTATCCAG
CAACCCAACCTAAAAAAAGGGCATCAAAAAGCCTTATGACGGTTGGAACTATGAAGCTGACCTTA
TTATTCATTCAAAGGGTAAAGGGCTTTTTCAGCTGGTGTGCAGGAGCGCACTTCTGTTTTCCCTT
TACTAGACTAGTGGTGGGGTCCCGTGGTTCCTATACCGCCGTGTT
Found at i:289871 original size:18 final size:18
Alignment explanation
Indices: 289848--289892 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
289838 TTTCATTCTC
*
289848 GTCAGGTTCTGGTTCCGG
1 GTCAGGTTCTGGTTCCCG
*
289866 GTCAGGTGCTGGTTCCCG
1 GTCAGGTTCTGGTTCCCG
*
289884 TTCAGGTTC
1 GTCAGGTTC
289893 AGGAGCGAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.07, C:0.24, G:0.36, T:0.33
Consensus pattern (18 bp):
GTCAGGTTCTGGTTCCCG
Left flanking sequence: Indices 289348 -- 289847
GTGAAAGCAAGCCAAGCCAGCCAGTTCCGGTTCAGGAGTGAAGGAGAAGGAATAAGGAGTTTCGG
ATTGACTGACAGTTCAGGATCAGATCAAGAATTAATAAGGAGTGGTTACAGGAGAGGAAAAGAGT
GTTTGAAGGAATCTTGCTTGAGTTGAGGATTGACTTCCTAACAAATTACCTTGTGTTTGAGTGAA
AGAAGTCAAAGGTTTTCTGTTTCGGCTTTGTTTACTGTTCGTGTTTGAATAAATAGGTTCAGTAG
TGATTGAGTTCAATCTGGTTCAGTAGTTCAATCTGGTTCCGGTGAAGAACTATCTCTTTTCTTTC
CTCTCCGGTAAGCTAAGCGTCTTCATTTATTCTTGTTTCGTCTTGACTTCCTGTTCCGTCTCATT
CATAAGGAGTCTCCCTTCTTGTAAACTCGGATAGGAAAAGGTTTAAGCCTTGACTTCCTGGGCAG
TCTCATTCTTGCTTGCTTGTTGAGTCTCTACCTTCTTTCATTCTC
Right flanking sequence: Indices 289893 -- 290392
AGGAGCGAAGCAGTGAAACCGACAGGGGAGGTTCAGGCAATGGAATTGTGAGACCAATAGGGCGA
AGGAGCTCTGCAATGAAACCGTACGGTGATTGAGCTTGACCTTCAGATCATACAGCTTCTCATCC
AGCCCAGCACATTTACCGAGTTGTAGTTAAGGCAATGGAATTGTAAGACCAATAGAATAGCATGA
GTTTACCGAGGGAATAAATAAAGAGGATCAAGAAAGAACACACAGAAAAGAGAGAGACCGAAGGA
GGGAGAGAGAAGCAGAGGTTCAGGCTTCTTCTTCGTTTACAGTTCATTCATAAATAGGTGATTGA
GTTCAGGAGTTCAGTTCGTTCAGTAGTGATTGAGCTTGACCTTTCATCTTGAGTTTCGGCTTGAC
TTGATGAATGCAATAACTGAACACTGCTTACTTAGTATAGTTATATTCCCATCATGAATCTTTCT
TTCCTTAAACCTTACGAAACAGAATAAGGAAAAGGAAAGAACAGA
Found at i:311533 original size:64 final size:67
Alignment explanation
Indices: 311453--311603 Score: 236
Period size: 70 Copynumber: 2.3 Consensus size: 67
311443 GCTCCTTCTT
*
311453 GCTTTCACTCCTCTCCC-T-TT-GGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGCTCA
1 GCTTTCGCTCCTCTCCCTTATTAGGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGCTCA
311515 CC
66 CC
*
311517 GCTTTCGCTCCTCTCCCTTTACTTACTGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGC
1 GCTTTCGCTCCTCTCCC-TTA-TTA-GGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGC
311582 TCACC
63 TCACC
311587 GCTTTCGCTCCTCTCCC
1 GCTTTCGCTCCTCTCCC
311604 GTAAGGTCGA
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
64 16 0.20
66 1 0.01
68 2 0.03
70 60 0.76
ACGTcount: A:0.10, C:0.39, G:0.20, T:0.31
Consensus pattern (67 bp):
GCTTTCGCTCCTCTCCCTTATTAGGTCTCGCGGTTGAACGAGTTCGCCTCGTAACCTCGGGCTCA
CC
Left flanking sequence: Indices 310953 -- 311452
TTTCCCTCGGTAATAGGTCTTTGTTTGGTTCTTGATCCGATTCCTCTATTACAATTAGTTATTGT
GTGTGAGGAAGTCAAGATGAGAGTGACGGAACCTCACTCCTCTCCCTACCGGTCGAGTGGTTTCA
CTCCTCTCGCTACTTACTCCTATTCATTCTCCTTCACCTGATTGAACCTATACAGTGAAAGAAGG
GATATTCAATTCATTAGCTGGCTGCTTTGAAAGACGAAAACCAGACAAGATGCATTCTCCGGGGA
ACCCATATTACCTGACCCTCTCCCTTCTTGAACTCCTGACCCGATATGCTATTCCCTTGTTTGTG
CAGTTATTGTGTGTTATTCAAACACAGTAAAGAGGGGCAACTCCTTCACTCCTCTGCCTATTGTT
TCTTTCATTTCCCGAGCCTAGGGTTGAACTAGGTAAGCTGGTGAGCCAGCGTTTACAGTCTTTGT
TAGAAGGGAGACTAAAGATTCATTCTCCTTCACTCGCTCCTTCTT
Right flanking sequence: Indices 311604 -- 312103
GTAAGGTCGAGCGGTTTCACTCCTTTTATTCTGTCTCCTTAACTCCTTTTCCTCTCCAACTATCA
GCTTCTCTACGGAACCGTAACTATGTCTTGTCTCATTGCTTCCTCTGCCTTACGGTCTCTTTTCT
TTCTGTTCTTTCTCCTCTCTCTGCTGCCCACTTACTCCTGAACTACTCTGTATTCCCTTCTGACC
CGTAACCTATTCAAAGAATGAATGAAATCCTTCGCTGGTTGGTTACCTCCTCTCTCTCTGTCCTG
TCTTCTCCTTTCTTTTACTCTTTCTCCCTCCTCTGTAAGATAAGAGGGATATTAATTCGACTAAA
CTCTTATGCCTATTTATTCTTTCATTTATTTAACTACAAGGTAAAGCTCTTTTTCCTATCCAACT
CGTTCTCGTGGCTTCGCCCCTTTACAGTTGAATCTGGTTAGTTAGTATGGTAATAACATAGAGTC
AAAGAAGAAGAATCAGATATTCTATTCCTTATAGAGTGGAGTAAC
Found at i:317980 original size:31 final size:31
Alignment explanation
Indices: 317934--317995 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
317924 TTTGACCTCT
* * *
317934 CTTTTATCCCTAAAAATAAGGGAGAGATAGA
1 CTTTGATCCCCAAAAATAAGGGAAAGATAGA
*
317965 CTTTGATCCCCAAAAATACGGGAAAGATAGA
1 CTTTGATCCCCAAAAATAAGGGAAAGATAGA
317996 AAATCATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (31 bp):
CTTTGATCCCCAAAAATAAGGGAAAGATAGA
Left flanking sequence: Indices 317434 -- 317933
ATAGGTCAGGTAATCAAGTATAAGGGGAAGGAGAAAGAGCAGTGAAAGAAGGTTCCCTTGTTTAC
TGTTCAAGAATAACTCACACACAAGAATAGTTCGGGAGCGAAGCGAACATCCTTGAATTTGTTTA
CAGTTCAGGGACAGAGTAAATCAATTAGCTGCTTTCCCTTGTTCAATAAGGAATAAATAGGGACA
AGTGATTGACTTCCTTATTACTACTTCTAAAATGGACCTCAAAATAGGGTAAAGCATCCATTTTA
ATCAAAAAAATAAGGGAGAGATACAATGAATTTCTTTCTGGTCTTTACAGGATCAGATCAAGAAT
GAATAGTGTTTCCCGAGTTCAAAGAGTGAAAGAAAAGGTTTAAGGGAGAGGATTGACTGACAGTG
AAGGAGAAGAGAAAGAGAAAGAATGAAGAGAGAGTTGAGGATTGACTGACAGTTAACTCTCATTC
ATCTTCAGGATTGACTTCAACATTACCTCGGCCCATTTGACCTCT
Right flanking sequence: Indices 317996 -- 318495
AAATCATTTATTTCAGCTCCCGCTATTAAGGGAAAAAGAGAAATACCCCTAAAATACGGGAAAGA
TAGAAAAGAATTTCTTTCAGCCGCTTTCCTTAGGGGAAAACCTCTTTTAATGTTTTACCCCTATG
TTGGATAGAAAAGAATTTATTGACGCTGCTGCTAAGGTGAAGGATCTTGATCAGTTAAAGAATGA
CTCTTTCGTCTTTCGTCTTCACTCTCATTTCTTCTTCTTTCTTTTCTCTGATCCTCCTTATTCAT
TCGACTGTTAAGACCATTAATTATTTTCTCTATCCTCTCCCTATTTTTGGGGGTGCTTGCTTATG
TTATGTTCACGTCACTACTATTTCTTATTTATTGTGTCTATCTATCTCGCACTTATACTAGGCAT
ATAGGAAGATGAATAAAATGAGAAAGTGAAGGAAGCTTTAGTCTCCCTGGAAGAAAGCCTATTGC
TCTTCAGAGAACTTCAGGCCATGGGCGATCTCCTGATAAGAACAT
Found at i:325982 original size:29 final size:31
Alignment explanation
Indices: 325925--325985 Score: 90
Period size: 29 Copynumber: 2.0 Consensus size: 31
325915 AGCTGGTTAG
325925 TAGAGTTAGAGCCGACGAAGGGAAGCGCTGTT
1 TAGAGTTAGAGCC-ACGAAGGGAAGCGCTGTT
*
325957 TAGAGTTAGAG-C-CGAAGGGGAGCGCTGTT
1 TAGAGTTAGAGCCACGAAGGGAAGCGCTGTT
325986 GAGGGTATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 16 0.57
31 1 0.04
32 11 0.39
ACGTcount: A:0.26, C:0.15, G:0.39, T:0.20
Consensus pattern (31 bp):
TAGAGTTAGAGCCACGAAGGGAAGCGCTGTT
Left flanking sequence: Indices 325425 -- 325924
GAGGAGCGAGCAAAGCAACGAGACAGGGGGAGGAACGAAGCAATGAGACCGAGTTCAATCAGTCA
AAGGTGACGGAGTGAAGGAGAATGAATCTTCAGTCTTTACTGTTCAAGAATCACTCACAATAACA
GAACAGAGAATGCATTAATCGAGACTGAGTGTTTACAGTCCCATTCTTCTTTCATTTGATGCTCC
CCATAACTGTAGTCAAGTTTCATTCTTCTTCTTCTTTCCACTAAGGTATAGATAGAGAGATAGAT
AATTCATTTCTTCTCTTGCTTTCTTCCTTCAGACTTACGAGAAGAGAATTACCGAGCTACATCGG
GCTCAGGAGGTAAGGAGCGGATACTCCTCTTTTCCTTTATTTTTAGTCTTTACATACAGTACAAT
AAATTAACAAGAGAACTGACCGGAATAGTATAGTCAAGAAAAGAAGGCGAAGGAACCCCCTTTTA
AGAAGGAAGAGTAAAGAACACCAACCAAGCAAGCAAGCTGGTTAG
Right flanking sequence: Indices 325986 -- 326485
GAGGGTATTGATTGAGTCTTATTGAGTTTACCTCGTGACCAGAATAAATGGGGTGCAGCAGCAAA
GCAACTCCCGACAGTAAAGGTTCCCGGGAAAGAGAAAGAATCGAGAGTTGAGTCTTTCAAAGCTG
CTAAGGTGAAGGATCTTGATCAGTTAAAGAATTCATCTTGAGGATTTACTGACAGTTCACTCTCA
TGTTGAGTTTCGTTGAGTCTTTCCTTTCAACACTTTCAGGTTCAGTAGTTCACTCTCATTCATAA
GGAGTTTAGTCTCCCTTCTTTCAAACACTTACAAGTCGAAGATCAAGAATGAATAGGGTCAGGAG
TTAAGGTTTCGTCGTCTTCCTCTTCCGTCTCATGAATCGAGAGTTTTTCCTTTCAACACTTTAAG
GTTCAGTAGCTAATGAGTTTACCGAGTTCAAGAAGGATCAGATCAAGAGGAGCCCGAGCAAGCCA
GCCAGTTCCTTCCAACCCAGCAAGCAAGAAAGCCAGTTCCTGTTC
Found at i:345346 original size:32 final size:32
Alignment explanation
Indices: 345310--345377 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 32
345300 TTTTTTTGAT
* * *
345310 TCAAAAGTCTATCTTTACCC-TCTTTTTCGGGA
1 TCAAAACTCTATCTCT-CCCTTATTTTTCGGGA
345342 TC-AAACTCTATCTCTCCCTTATTTTTCGGGA
1 TCAAAACTCTATCTCTCCCTTATTTTTCGGGA
345373 TCAAA
1 TCAAA
345378 TCCAGTAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 3 0.10
31 24 0.77
32 4 0.13
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (32 bp):
TCAAAACTCTATCTCTCCCTTATTTTTCGGGA
Left flanking sequence: Indices 344810 -- 345309
CTACTCATTCACCTCTACAACTATCAGCTTCTCTCCTGGACTGATTGATTGAACAAGGTCTCTTT
TCTCCTTCACCTGTCGGTTGAACAATTCCATTGCTGATCCTCTCCTTTACAGTCGAGCCGCTGAA
AGAAAATCTTTTCTATCCTATATAGGGGTCAAAGTTCGTAAGAGGTTTTTCACTAATAGCAGCAT
CAAAAATCAAAGAAATTCTATCCGCCATAGGGGTCAAACCTTGTCATAGCTTTTTCCCTTAATAG
CAGCATAGGAAATCAAAGAAATTCTATCTTTCCCCTATTTTTTGGGTATCGCTCTTTTTCCCTTA
ATAGCTGAAGCTTCAATCAAATAAATTCTATCTTTCCCGTATTTTAGGGTATAAAATGGATGCTT
TACCCGGATTTCCCTCGGTAACTCGACTGTAAACACGAAAAAAACAAGAATGATCCTATCTATCC
CCTATTTTTTTGGATAAAAGTCTACCCTTCCCGGATTTTTTTGAT
Right flanking sequence: Indices 345378 -- 345877
TCCAGTAAAGGTAATTAATAAGTCAAGACTATCGAAGAATCAATTCGACTTAACTGTAAGTAAAT
CCGAAAGATTCCTTCTTTCACTCTTGAACTCGGTCTCGCTCTTTCACCCCTCTCCAACTCTGTAA
AGCTGCTTCAATTCCATTGCCTGAACCTGATGATGTCCCTTCTCCCTATTTATTCCTTCTTGAAT
GAACTCGGAGGTAAAGAAGTTGCTCTTTTCTTGAACTCGGTAATGAGGAAGGAAAGAGAGAGAAG
CTCATGAACCTGAACCTGAACCTTCTTGAACTAATGAATCTATTCTATTGGTCTCACTACTGAGC
CATTACTTATTTATTCACTGCTTCACTCCTAGACTATTTATTCTATTACTTCTTCCCCGGCCGGA
TTTCCCTCCTTAGCCTGGAACCTCTATTCTTATTCGCAGTAACCGAAGAAAGACTGAACCTCAAA
CCGTAACCTCGGCTTCTTGATCTGATCTTGATCTTCTCGCTACTT
Found at i:347631 original size:36 final size:36
Alignment explanation
Indices: 347588--347691 Score: 181
Period size: 36 Copynumber: 2.9 Consensus size: 36
347578 CTATACTGAA
347588 CCAGAACCTGAAAGCATTCCCTACTCTATACTTACC
1 CCAGAACCTGAAAGCATTCCCTACTCTATACTTACC
347624 CCAGAACCTGAAAGCATTCCCTACTCTATACTTACC
1 CCAGAACCTGAAAGCATTCCCTACTCTATACTTACC
* * *
347660 CCCGAACCTGAAACCAGTCCCTACTCTATACT
1 CCAGAACCTGAAAGCATTCCCTACTCTATACT
347692 GACACTTCCA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.24
Consensus pattern (36 bp):
CCAGAACCTGAAAGCATTCCCTACTCTATACTTACC
Left flanking sequence: Indices 347088 -- 347587
CGCCCTTCTCCTCGTCGCTCTTCTTCTCCGCTCTCTCGTAAACAAACTCTGTCTGTTTCATGTCT
TCTTCCCTCTCCCAACCAGCCGCCCCTCTCCCTTTGGTCTCGCGGTTTCACCCCTCTCTCTGATC
TTCTTGTCTGGCTGCTTCGCCCCTCGTATCCACCAACTATTACTTTGTGTCTCCTTATATATAAC
CTTTACTGTCGGTAAGATATTGATTTATAGATTCTCCTTGCCCTATGCTCTTCTTTCTTTACTTT
ACCTTTCCAGTGTTTGTGAAAGTCAAGCCTAAAGATTCATTCTCGTTCACTGAATCACTATACTT
CTTTGATTTCCCTTAGCAAGTCTTTCATCAAGTCAAGACTCAGCAAATGAAAGAGCAAGATCAAT
TCAAGACTAAAGTAGGCTAGTAGTCTTACCGCTTCTCTCCGTAACCTGTCCAACTCTTCTTTCAC
AGAAGGAAAGACTGAACCTCACTCAAGCTAGCTAGCTATACTGAA
Right flanking sequence: Indices 347692 -- 348191
GACACTTCCAACTCCCTCTCTACTTGAACTTAGAACTCTATACTTATTACACACACTTCCTCCTC
CCTACTCTCTACTTGAACTTAGAACTCTGTACTTACTCATTAAGCGATCCTACTCATTAAGCTCT
ACAGCCTACAAGCGATATTCCTTGACGAGGCGAACCTATGTTACCTGAAATCCTCTAACTGAGGA
GAGAAGAAGATTGATTACGGGAAGGTCATGCTACTATAACCTTAATAAGCTCTTAACCTTAATAA
CCTCTATAGAAAGCAAGAGCGGAAGATCCCCATTACTACAATAATGTCAGTCAAGCTCACTCATT
AACTTGCCGAGAAAGCTGCAAGAGAAGAAGATTTATTACAAGAGGGAAGGTCATGCTACTAACTT
GACGAGACAACAGGAACAACAAACAAGATAATTATATATATTACAGGAAGGAGGGTCAGGTCAAG
CTAACCTCTCTCTGGTCTAGAACAAAAGAGTATGAGAAGGAAGCT
Found at i:347945 original size:17 final size:17
Alignment explanation
Indices: 347923--347956 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
347913 CATGCTACTA
*
347923 TAACCTTAATAAGCTCT
1 TAACCTTAATAACCTCT
347940 TAACCTTAATAACCTCT
1 TAACCTTAATAACCTCT
347957 ATAGAAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (17 bp):
TAACCTTAATAACCTCT
Left flanking sequence: Indices 347423 -- 347922
CCTTAGCAAGTCTTTCATCAAGTCAAGACTCAGCAAATGAAAGAGCAAGATCAATTCAAGACTAA
AGTAGGCTAGTAGTCTTACCGCTTCTCTCCGTAACCTGTCCAACTCTTCTTTCACAGAAGGAAAG
ACTGAACCTCACTCAAGCTAGCTAGCTATACTGAACCAGAACCTGAAAGCATTCCCTACTCTATA
CTTACCCCAGAACCTGAAAGCATTCCCTACTCTATACTTACCCCCGAACCTGAAACCAGTCCCTA
CTCTATACTGACACTTCCAACTCCCTCTCTACTTGAACTTAGAACTCTATACTTATTACACACAC
TTCCTCCTCCCTACTCTCTACTTGAACTTAGAACTCTGTACTTACTCATTAAGCGATCCTACTCA
TTAAGCTCTACAGCCTACAAGCGATATTCCTTGACGAGGCGAACCTATGTTACCTGAAATCCTCT
AACTGAGGAGAGAAGAAGATTGATTACGGGAAGGTCATGCTACTA
Right flanking sequence: Indices 347957 -- 348456
ATAGAAAGCAAGAGCGGAAGATCCCCATTACTACAATAATGTCAGTCAAGCTCACTCATTAACTT
GCCGAGAAAGCTGCAAGAGAAGAAGATTTATTACAAGAGGGAAGGTCATGCTACTAACTTGACGA
GACAACAGGAACAACAAACAAGATAATTATATATATTACAGGAAGGAGGGTCAGGTCAAGCTAAC
CTCTCTCTGGTCTAGAACAAAAGAGTATGAGAAGGAAGCTCAAGTAAGACCTGACGAAGAGAAGA
ACTGAATTTACATTACAGAAGGGGAAGGGGAATTCTTGTTTCGGCTTTCCTGACTGTGATTGATC
GTTAATCTTTCTTCTTCAATCAATTCATTCTCTGATTCTGATGAACCTATACATACTCGGAAGTC
TCATTCAAATAGCTTTACCGAGTGAAAGAGTGAAAGAAGGGACAGGAGAAAGAGCTGTTAAAGAA
TCCATAGGAAAAGGAAGAAGACGACGAGAACGAAGGAAGAGGATT
Found at i:349061 original size:17 final size:18
Alignment explanation
Indices: 349039--349076 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
349029 CTATAGCTAT
349039 AGAGCAAGCAACCAAG-A
1 AGAGCAAGCAACCAAGCA
349056 AGAGCAAGCAACCAAGCA
1 AGAGCAAGCAACCAAGCA
349074 AGA
1 AGA
349077 CAGACAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.53, C:0.24, G:0.24, T:0.00
Consensus pattern (18 bp):
AGAGCAAGCAACCAAGCA
Left flanking sequence: Indices 348539 -- 349038
TGGAAGGGTCAAGCTGACCTGACGAGACAAGAAGAACTACATACAATATATTATTACATTACAGG
AAGGAAGCTCAAGTCCTCTCTTATAAGTCACCTCTGGAGCAAGCAACAAGCCAACAACATTCATT
CCATACGGAGGAGGTCAAGCTAATAACCTAACGTCTCGAGAAAGCAGCAGGCAAGCAAGCAACAA
CAACATATTCAATTCATTACAGGCGCGGGAAGGGGTCGTCGTCGTCAATCAAGTTAACCTAACGT
GACGAGCAAGACAACTACATTTACATTAAAAGGTCAAGCTGACGCTAGTCTAGAACAAGAACTGA
ATTGACATTACATACAGGAAGCTCAAGCTGACGTGACGAACACAAGAACTACAATATTATTACAG
AAGGGTAAAGCTTACCTACCCCTACCAACGTGACGAGAAAGCCAAACAACAAGAGAAGATATTCA
TTACATACAGAAAGAGAAGCTGCTCACTCACTCACCTATAGCTAT
Right flanking sequence: Indices 349077 -- 349576
CAGACAAGAAGATGAATTACATCCGGCGGAAAGGTAAAGCTAATCTGACGTCAAGAAGAACAACA
TTTACATTACAAAAGCAAGAAGGTCAAGCTCAAGCTACTAACCTGACAAGAACAAGATTTACATT
ACGGAAGGTTCTCAAGTTCTAGCTAGTCATGAGCAGGACAAAGAAGACAACTTAATTTACATTAC
GGAAGGTTCTCATTCTCAAGCTGACGCAGCTAGTCATAAGCAAGCCAAACAACAACATTTTACAT
TACATAAGGTTCTCAAGCTGACGCTATTCATGAAGAACAACATTTTACATTACGGAAGGGTCAAG
TTACTAACTTCTAGAAGACAACCAACAAGAAGAACTACATTTACAAGCAAGAAGCTCAAGCTAAC
CTAAGGTGACGAACAACAACATTCAATTCATTACATACTCCTGCAAGGGGAAGCTAAACTCTAAT
CTATAGAAAGAAAGAGAAAGAACAAGACCAAGAAAACTAACACTA
Found at i:349075 original size:21 final size:21
Alignment explanation
Indices: 349041--349084 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
349031 ATAGCTATAG
*
349041 AGCAAGCAACCAAGA-AGAGCA
1 AGCAACCAACCAAGACAGA-CA
*
349062 AGCAACCAAGCAAGACAGACA
1 AGCAACCAACCAAGACAGACA
349083 AG
1 AG
349085 AAGATGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.52, C:0.25, G:0.23, T:0.00
Consensus pattern (21 bp):
AGCAACCAACCAAGACAGACA
Left flanking sequence: Indices 348541 -- 349040
GAAGGGTCAAGCTGACCTGACGAGACAAGAAGAACTACATACAATATATTATTACATTACAGGAA
GGAAGCTCAAGTCCTCTCTTATAAGTCACCTCTGGAGCAAGCAACAAGCCAACAACATTCATTCC
ATACGGAGGAGGTCAAGCTAATAACCTAACGTCTCGAGAAAGCAGCAGGCAAGCAAGCAACAACA
ACATATTCAATTCATTACAGGCGCGGGAAGGGGTCGTCGTCGTCAATCAAGTTAACCTAACGTGA
CGAGCAAGACAACTACATTTACATTAAAAGGTCAAGCTGACGCTAGTCTAGAACAAGAACTGAAT
TGACATTACATACAGGAAGCTCAAGCTGACGTGACGAACACAAGAACTACAATATTATTACAGAA
GGGTAAAGCTTACCTACCCCTACCAACGTGACGAGAAAGCCAAACAACAAGAGAAGATATTCATT
ACATACAGAAAGAGAAGCTGCTCACTCACTCACCTATAGCTATAG
Right flanking sequence: Indices 349085 -- 349584
AAGATGAATTACATCCGGCGGAAAGGTAAAGCTAATCTGACGTCAAGAAGAACAACATTTACATT
ACAAAAGCAAGAAGGTCAAGCTCAAGCTACTAACCTGACAAGAACAAGATTTACATTACGGAAGG
TTCTCAAGTTCTAGCTAGTCATGAGCAGGACAAAGAAGACAACTTAATTTACATTACGGAAGGTT
CTCATTCTCAAGCTGACGCAGCTAGTCATAAGCAAGCCAAACAACAACATTTTACATTACATAAG
GTTCTCAAGCTGACGCTATTCATGAAGAACAACATTTTACATTACGGAAGGGTCAAGTTACTAAC
TTCTAGAAGACAACCAACAAGAAGAACTACATTTACAAGCAAGAAGCTCAAGCTAACCTAAGGTG
ACGAACAACAACATTCAATTCATTACATACTCCTGCAAGGGGAAGCTAAACTCTAATCTATAGAA
AGAAAGAGAAAGAACAAGACCAAGAAAACTAACACTAACATGAAT
Found at i:350923 original size:37 final size:35
Alignment explanation
Indices: 350882--350967 Score: 102
Period size: 37 Copynumber: 2.4 Consensus size: 35
350872 GATATTACCC
* *
350882 GAGAGTATATTGTTACCT-CCTTTCTATTAACCTGAGT
1 GAGAGTATATTGTT-CCTACCTTTCTAGT-ACCTG-CT
**
350919 GAGAGTATATTGTTGTTACCTTTCTAGTACCTGCT
1 GAGAGTATATTGTTCCTACCTTTCTAGTACCTGCT
350954 GAGAGTATATTGTT
1 GAGAGTATATTGTT
350968 GTTACCCTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
35 15 0.34
36 6 0.14
37 23 0.52
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (35 bp):
GAGAGTATATTGTTCCTACCTTTCTAGTACCTGCT
Left flanking sequence: Indices 350382 -- 350881
TTCAACTGACACTGAAGAGAGGAAGTGAAGCTAAGCTGATTTGATTCATTCTGCTATCCTTGAAC
AAGTAAAGACTCTCTACTCCTTGATTGATTCATTCTCCTTAACTATTTTACCTGACCTGGAACCA
CTAGAAGAAGTGTCTTCGTTCCGAGTCGTTCACTCCGTAACCTATCTTTTGCTTATTCTTATTCC
TAGTAGAGACTAAAAGGTAAAGGTCAAGATTAATCAGACTTGACAGGAAAGCAACTTACTCTCTC
TCCTGATTGAGAAGAAGGTAAAGAAAGACTACTTGATCTGCTGCTCCTCCTGACCCTCTCCTTTG
TAGCTCTTCTTCTCCCCTCTCTAACTACAACAAGGGTAACTACAACAAACAGGGATTGAACTAAC
TCCCTCACGCACGGACGGGTATTACCCTCGCTACTTCACCTCATGAAATCCGAAAGTTCTATCTA
TTCCATTGCTGGAAGCTTAATAAGACTCTGTCTATGATATTACCC
Right flanking sequence: Indices 350968 -- 351467
GTTACCCTTCTATCTAGTATATTGAACAACAAAGGAAAGACTGACTAAAGCTTTACCTTAAACCT
AAAGAACAAGTAAAGACTATCGCAAGAGAAGAAGATTTATTACGGGAAGGGTCAAGCTACTAACT
TGACGAGACAACTGGAACAACAAGATTTATATATTACAGGAAGGAGGTTCAAGCAAATCTCTGGT
GACGAACAAGAGTATGAATTACGGGAAGGGTTGGTCAAGCTAATCTGACGTCTCGAGCAACAACA
AGATATTTACATTACGGAAGGGTAAAGTCCTCTGACGTCTCGAAACAGGATATTTACATTACGGA
AGGGTAAAGCTGACGCTGGTCATGAGGAACAGCATTTCCATTACAGAAAGAAGGGTAAACGTACC
TGACGTCTCAAGAAGAACAACATTTCCATTACAGGCAAGAAGGTAAAGTAATCTGACGTCATGAG
GAACAAGATTTACATTACGGCAGGGTAAAGCTGACGCTAGTCTAG
Found at i:350964 original size:35 final size:37
Alignment explanation
Indices: 350882--350979 Score: 121
Period size: 35 Copynumber: 2.7 Consensus size: 37
350872 GATATTACCC
** * *
350882 GAGAGTATATTGTTACCT-CCTTTCTATTAACCTGAGT
1 GAGAGTATATTGTT-GTTACCTTTCTAGTAACCTGACT
350919 GAGAGTATATTGTTGTTACCTTTCTAGT-ACCTG-CT
1 GAGAGTATATTGTTGTTACCTTTCTAGTAACCTGACT
*
350954 GAGAGTATATTGTTGTTACCCTTCTA
1 GAGAGTATATTGTTGTTACCTTTCTA
350980 TCTAGTATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
35 26 0.47
36 6 0.11
37 23 0.42
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.42
Consensus pattern (37 bp):
GAGAGTATATTGTTGTTACCTTTCTAGTAACCTGACT
Left flanking sequence: Indices 350382 -- 350881
TTCAACTGACACTGAAGAGAGGAAGTGAAGCTAAGCTGATTTGATTCATTCTGCTATCCTTGAAC
AAGTAAAGACTCTCTACTCCTTGATTGATTCATTCTCCTTAACTATTTTACCTGACCTGGAACCA
CTAGAAGAAGTGTCTTCGTTCCGAGTCGTTCACTCCGTAACCTATCTTTTGCTTATTCTTATTCC
TAGTAGAGACTAAAAGGTAAAGGTCAAGATTAATCAGACTTGACAGGAAAGCAACTTACTCTCTC
TCCTGATTGAGAAGAAGGTAAAGAAAGACTACTTGATCTGCTGCTCCTCCTGACCCTCTCCTTTG
TAGCTCTTCTTCTCCCCTCTCTAACTACAACAAGGGTAACTACAACAAACAGGGATTGAACTAAC
TCCCTCACGCACGGACGGGTATTACCCTCGCTACTTCACCTCATGAAATCCGAAAGTTCTATCTA
TTCCATTGCTGGAAGCTTAATAAGACTCTGTCTATGATATTACCC
Right flanking sequence: Indices 350980 -- 351479
TCTAGTATATTGAACAACAAAGGAAAGACTGACTAAAGCTTTACCTTAAACCTAAAGAACAAGTA
AAGACTATCGCAAGAGAAGAAGATTTATTACGGGAAGGGTCAAGCTACTAACTTGACGAGACAAC
TGGAACAACAAGATTTATATATTACAGGAAGGAGGTTCAAGCAAATCTCTGGTGACGAACAAGAG
TATGAATTACGGGAAGGGTTGGTCAAGCTAATCTGACGTCTCGAGCAACAACAAGATATTTACAT
TACGGAAGGGTAAAGTCCTCTGACGTCTCGAAACAGGATATTTACATTACGGAAGGGTAAAGCTG
ACGCTGGTCATGAGGAACAGCATTTCCATTACAGAAAGAAGGGTAAACGTACCTGACGTCTCAAG
AAGAACAACATTTCCATTACAGGCAAGAAGGTAAAGTAATCTGACGTCATGAGGAACAAGATTTA
CATTACGGCAGGGTAAAGCTGACGCTAGTCTAGAACAACAACAAG
Found at i:351670 original size:18 final size:18
Alignment explanation
Indices: 351639--351676 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
351629 CATGAGAAAG
*
351639 CAAGAGAAACAACAAGAA
1 CAAGAGAAACAACAACAA
351657 CAAGA-AAACAAACAACAA
1 CAAGAGAAAC-AACAACAA
351675 CA
1 CA
351677 TTCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.68, C:0.21, G:0.11, T:0.00
Consensus pattern (18 bp):
CAAGAGAAACAACAACAA
Left flanking sequence: Indices 351139 -- 351638
AGGAGGTTCAAGCAAATCTCTGGTGACGAACAAGAGTATGAATTACGGGAAGGGTTGGTCAAGCT
AATCTGACGTCTCGAGCAACAACAAGATATTTACATTACGGAAGGGTAAAGTCCTCTGACGTCTC
GAAACAGGATATTTACATTACGGAAGGGTAAAGCTGACGCTGGTCATGAGGAACAGCATTTCCAT
TACAGAAAGAAGGGTAAACGTACCTGACGTCTCAAGAAGAACAACATTTCCATTACAGGCAAGAA
GGTAAAGTAATCTGACGTCATGAGGAACAAGATTTACATTACGGCAGGGTAAAGCTGACGCTAGT
CTAGAACAACAACAAGATTGACATTACAGGAAAGGAAGGTCAAGTTACTAACTTCTAGAAGCCAA
CAACAATAACAACATTTACAGGAAAGAAGGTCAAGCTAACCTCAGGTGACGAACAACTACATGAA
TTACATACTACGGAAAGGTTAAGTTAAACTAACGTCATGAGAAAG
Right flanking sequence: Indices 351677 -- 352176
TTCATTCCAAGCAAGCCAGGTAAAGCTAATCTCTATTACAGATAGAAATACAATAGAATAAGGAA
TAAATATTGATATATATCTTGACCACTTACTCTATTTCTCGATATTTCTTTTGATTGAAAGAAAG
ACTAAATGTTGCTGAATTCGAGTTCACTGTCAGACTAAAGCCAAAGAGTTTACGGTGTTTGAATC
AATAGTCAAAGTAACTCCATCATAAGAGGAACTTGTTTCAAGACGAAAGAGAAAGGAGGCTTAAA
CAAGACAAGATGCGTTCACTCTTTCTTTCTTCTCTGTCTGTAACCTTGGTTGGCTACTTAGCTTT
GGTTTTGTCTCCTTCACTACTTCCTGAACCGTCTTTCCTCTCTGGCCGGCCGTACGTAACCTATT
TCTTCATAGCTGTAGGACTTAACTAACTACTCTCTACGCTTATTGGTCTCTTTTCAATCACTTGT
TGGGGTAAAGGGCAAGGAAAGGGATTGATAGAGAATGTGGCTTCT
Found at i:352843 original size:15 final size:15
Alignment explanation
Indices: 352820--352849 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
352810 CCTCTCCTCC
*
352820 AACTCCAACAAGGGT
1 AACTACAACAAGGGT
352835 AACTACAACAAGGGT
1 AACTACAACAAGGGT
352850 TTCACTCCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.23, G:0.20, T:0.13
Consensus pattern (15 bp):
AACTACAACAAGGGT
Left flanking sequence: Indices 352320 -- 352819
CGTAAACAAGGGTTTAGCTATTCGAAAACAAGAGAAAGCCGTCTGCAGGTCTCAATACACCCCTG
TATTTCTGTTCTTCGGCAATCCTTAGGGTCCACAGCAAGCTCTCCTGGTTTCTTTCAACTTACAC
TGAGTAGGAAGTGAAGCTAAGCTCATTCATGATCCTATCCTTGAACAAGTCAAGACTCTCTACTC
CTTGATTGATTCTGTCTCCTTAACTCTTTCACCTGACCTGGAACCACTATCAGTGTCTTCGCTCC
GATCGATTCCTAGTGAGTTCGTTCATCACTCCTATACCTATCTTTTGTTTCTTCTTTTCCAGTGG
AGACTCTAAAAGGAAAGGGAAAGATTAATCAGACTTGTGCTTGCCAGGAAAGCTAGCTAGTTAGT
TGTTATTACTCTCGAACCTGATTGAAGAAGGTAAAGAAAGACTACTGGATCCGCTGCTCCTCCTG
CCCTCCCCTCTCCTTTACAGTCGAGCAGTTTCTCCCCTCTCCTCC
Right flanking sequence: Indices 352850 -- 353349
TTCACTCCCTCACTGGTATGGGTATTCCCCTCGCTACTGCACTCATTCAATCCTCAAGAAAGCTC
TTACCTAACCTACTTCACTCATTCAATCCAAGAAAGCTCTATTCCATTGCTGGAACCTTAATACT
CTGTCTGTCTATTCTACTATATACCTGAGTGAGAGTAGATTGTTACCTTTCTAGTATATTGAACA
ACAAAGCAAAGACTGACTAAAGATGAATTATCTTAACCTTATTAAACCTAAAGAACAAGTAAAGA
CTAAAGCCAGCCTGAGAGTTTCTAGTCTTTGAATAAACGGAAAGAGGGTTAGAACCTTTTTTCTT
TCTCTTCATCATTCTCCTTAATGAACTCGCATATTCAATACTTGCCCTATGCTTTCTTTACGGTG
GAGACTAAAAGGAAAGAGGGTCGACTCAAGCTGAATGAGACTGATTGAGCTCTGTAAATGGAATA
GGTGTTTGTTTACTTACCTCCTTCACGAACAAGTACCTCAAGCAA
Found at i:367832 original size:17 final size:17
Alignment explanation
Indices: 367810--367844 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
367800 TTGGCACTGA
367810 ACTAGACTGACGGAAAG
1 ACTAGACTGACGGAAAG
367827 ACTAGACTGACGGAAAG
1 ACTAGACTGACGGAAAG
367844 A
1 A
367845 GAAGGCTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.29, T:0.11
Consensus pattern (17 bp):
ACTAGACTGACGGAAAG
Left flanking sequence: Indices 367310 -- 367809
AAGAGTGATAGCTTCAGGACTGATAGATGAAGATTGAGTCTTGACTGCTTAGCTTGAAGCTAAAG
TAAGGAACTAGAGCATTACGACAAGAGCAGTGTTAGGAGACCATAGCATTCCGAAGTCAGCAGCA
GCAAGCAACCTATATATATTGTTTGTTCCCTGCCAGAGATTGAGACATAGAAGCCATAGATATTC
ACTTCCCAAAGCCATTATCCCAGTGGGAGTTATTGATGAGGTAGCATTCTTGGAGGATGATTGCG
GGTCTTACCACTTCGCTCGCCCTATAGTAAAGTCCAACTTCGTCTTCAAAGGGAGCAATTGGGAA
GTTAGAGTCCGTAGAAAGATAAGCAAGGAGAATATTGATTGATAGAATCCCGGCAAGTAAAGTGA
GAATATCCGTTTCTCTTTTCGATTGAGATTTGAGGGCTAAAGCCCGGCATCCCTGATCTTCACCC
ATAAGTCAGATTGTTGCCTTCCTCACCAAAACCATTTGGCACTGA
Right flanking sequence: Indices 367845 -- 368344
GAAGGCTAGAAGTATTAGGATCCTTTTCGCATGTTGCGGAGATTAAGACAACTATAGAAGTTGGA
AGGAAGCCCGCCCTTAGAAAGAGTCTAAAGTCTAAAGCTAGTCAAGTATGTATAGTAGGATTAGT
TGTTACAGGTTTCCCTATAAATAAAGGATTTCCAACTTCCCCCGTACTTTCTCATAGTTTAGAGT
GAGATCTTTCCAGTCTTCTTCAGATAAGCCCGAGATTCCGTCTTAGTTGCTTCAGGACTTAGTTA
TCAGTTTCGATTGACTGAGATGTAAAGAGATTGAATTAGTGTAGTTATCTTTCCCCCCGAAGTGT
GCATGAGTTACGAAAGGCGGAAATCTTTCTTTCTGCTTAGCTTGAAGCGGTATAAATTCTAGGCT
AAAGTGAAAGTTGGAGGGAAACGCTAGTAGTATAGGTATTCAAAGGCCTTACTTTAGAGATCGGG
GAGTAAAGAAATATCAAGGCTTAGGCAGGCGTTAATCAGTAGTCT
Found at i:374233 original size:29 final size:29
Alignment explanation
Indices: 374191--374273 Score: 112
Period size: 29 Copynumber: 2.8 Consensus size: 29
374181 CTATTTCTTC
*
374191 TTCTTCTTTATTAACCGTAAACTCCTGAT
1 TTCTTCTTTATTAACAGTAAACTCCTGAT
* *
374220 TTCTTCTTTATTAAGAGTCAACTCCTGAT
1 TTCTTCTTTATTAACAGTAAACTCCTGAT
*
374249 TTCTTCTCTTTATTAACTGTAAACT
1 TTC-T-TCTTTATTAACAGTAAACT
374274 GCTTCACCTG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 29 0.63
30 1 0.02
31 16 0.35
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.47
Consensus pattern (29 bp):
TTCTTCTTTATTAACAGTAAACTCCTGAT
Left flanking sequence: Indices 373691 -- 374190
TTACTCATGACCCCCTACAACTATTAGTCCGCGGAACTACTCACTCTCTCTATCGTTCTACATTG
ATTCTTGAACAAAGAAGGTAAGGTGTAAAGCTAGAAGACTAAAGAGAAGATGAAGAAGCTCATTC
CCCTTATTCTTATTCAGTTACAGTCTTTGTAGTAAATAAAGCATATATTCAATTCATTCTTACAG
TCGAGTAAAGAAAAGAATAATCAGGTAGTTAGTCAAGACTGCAGCAAAAGAAGATTAATGATCCC
TCCCTCCCTTACTTGACGGGAAATGAATGAATGGAAAGAAGGAACCTAGGCTTCGCGCTCAATCA
CCTGTGGGGTAAAGCTGCTTCGCTCATTCACCGTAAGTCAGTCAAGACTGTGCAGCAAGAGAAGA
TTAATGATCCCTTACTTGACGGGGTAGAGTCAATGAATAGAAAGAAGGTGGAGTAAATTCATGGA
AAGAAGGTAGAGTAAATTCCTTGCAGCCCAATCACCTATTTCTTC
Right flanking sequence: Indices 374274 -- 374773
GCTTCACCTGTCGGTTTCACAGCTTCGCTACTTTGACTATTTATTCAAACACTCCTTACCTTGTC
GCATATTCAATCCTTCTTGTTGAACGGGGTAAAGCTGCTAATTAATTGCCTGAACTGTACTAATG
AATTGATGACTCTCCTTTCTTGACCAGTAAAAGATCAATACTCAGGATTCCCATTCTCCTTTGAC
TGATGGAACTCGTCGTAAACTATCAGTTTCTTTCCTTCAATCCTTATAAAGATACATTCTCCTGA
GCCTACTTATTTATTCATCAAGTCAAGACTGAAGCTCGATTCATTCTCTTTCACTACTGAACCCT
TAGTCCCCGCAGTTCTTGTTGTTCGTTTCCTCTGCCTGAACTGTAAAAGATCAATACTCAAGATG
AATGAGAAATAACTACTTCCCTTCTTTCCCTGGGTAAAGGAGCTAATGAATTGACTCTATCTCCC
TGCTGATGCAACTAACTGTAAAACTGATTGATCTGATCCTTCTTT
Found at i:375880 original size:20 final size:20
Alignment explanation
Indices: 375855--375896 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
375845 AAAGGTCAAG
375855 CTCATTCACCTACACCTATT
1 CTCATTCACCTACACCTATT
375875 CTCATTCACCTACACCTATT
1 CTCATTCACCTACACCTATT
375895 CT
1 CT
375897 ATTGATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.40, G:0.00, T:0.36
Consensus pattern (20 bp):
CTCATTCACCTACACCTATT
Left flanking sequence: Indices 375355 -- 375854
GTAAACTCGGTCTCACAATTCCATTGCCTTAACCTGTTGGTTGAACAAGGTAATGAATAAGTGAA
TCCTCAACTGCTTATTCATTCGACTGAACCTCTACACTTCGGTTGAACAATTGAATTGCCTTAAC
TACTTACTGATTCTTCCTTCTTTCTTATACTGACTCTATATTATATTACCTGACCACCGATACTT
ACTTGAAGAGTTCTTTCTCCTTTATTGCTTGAACCACTCTTTGACTGACTGCTAAAGTCAAGTAG
CTAATTAATTGTTGACTCTACGACTGAAGGGTTGAACTAACTAACTAACTAACTATTTACCGGTC
TCTCTTGTTCGTTATATGCTTTTATAGGTAAATACAGTGTATTGTTGAGAGTTAGTCTTTCTCCG
GACTTTACCGGTATTTGAGGCTGCTTAATGTTTTAATGTAGTGAGACTGATGTAAGTAACTCTTT
TACTGAACCTTGTATGTATGTAACTAAGCCGGATGAAAGGTCAAG
Right flanking sequence: Indices 375897 -- 376396
ATTGATAAAGCTGCAGCTAATAATGAATTAACAACTCTTTCACTTCCAACTCTGTCTGAGTCTGA
ACTACGTAACCTCTCTGTCCTTTACTTTACTTCGACTAAACTCCTTATGAGTATAACCTTTCACT
CTGTAAGTAGTAGTAGTTAGTTAGTCTTTCCCCTTTACCTCTCCAACTGCTAAACTCCTATTGAT
GCTTTCTCCTTTTAACTACTGATTCTTCTTTACCTGCCCTTTGGTCTGTCAGCTTGGCTCCTGAA
ACTGATTGAAGGAAGTAAGTAACTCCTGATTGAAGTAAGTAAATGGTATGATTGAAGGAAGTAAG
TAAATGGTAGTTGTCTTTCCCCTACACCTCTCTGTCTCTGTCTGAGTCTGAACTCTTTATCCGTA
ACCTCTCTGTCCAATTCTTCTTTCCGAAGTGAATCCTTAACTACTTCCTTAGCCTAAAGAACGTA
TTCGCTATAAGATTCATTCTACTCTTCTTTCATTCAGGCAGGAGG
Found at i:376185 original size:24 final size:23
Alignment explanation
Indices: 376158--376224 Score: 73
Period size: 24 Copynumber: 2.9 Consensus size: 23
376148 GCTCCTGAAA
376158 CTGATTGAAGGAAGTAAGTAACT
1 CTGATTGAAGGAAGTAAGTAACT
* * **
376181 CCTGATTGAAGTAAGTAAAT-GGT
1 -CTGATTGAAGGAAGTAAGTAACT
*
376204 ATGATTGAAGGAAGTAAGTAA
1 CTGATTGAAGGAAGTAAGTAA
376225 ATGGTAGTTG
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
22 16 0.47
23 1 0.03
24 17 0.50
ACGTcount: A:0.40, C:0.06, G:0.27, T:0.27
Consensus pattern (23 bp):
CTGATTGAAGGAAGTAAGTAACT
Left flanking sequence: Indices 375658 -- 376157
ACTAACTAACTATTTACCGGTCTCTCTTGTTCGTTATATGCTTTTATAGGTAAATACAGTGTATT
GTTGAGAGTTAGTCTTTCTCCGGACTTTACCGGTATTTGAGGCTGCTTAATGTTTTAATGTAGTG
AGACTGATGTAAGTAACTCTTTTACTGAACCTTGTATGTATGTAACTAAGCCGGATGAAAGGTCA
AGCTCATTCACCTACACCTATTCTCATTCACCTACACCTATTCTATTGATAAAGCTGCAGCTAAT
AATGAATTAACAACTCTTTCACTTCCAACTCTGTCTGAGTCTGAACTACGTAACCTCTCTGTCCT
TTACTTTACTTCGACTAAACTCCTTATGAGTATAACCTTTCACTCTGTAAGTAGTAGTAGTTAGT
TAGTCTTTCCCCTTTACCTCTCCAACTGCTAAACTCCTATTGATGCTTTCTCCTTTTAACTACTG
ATTCTTCTTTACCTGCCCTTTGGTCTGTCAGCTTGGCTCCTGAAA
Right flanking sequence: Indices 376225 -- 376724
ATGGTAGTTGTCTTTCCCCTACACCTCTCTGTCTCTGTCTGAGTCTGAACTCTTTATCCGTAACC
TCTCTGTCCAATTCTTCTTTCCGAAGTGAATCCTTAACTACTTCCTTAGCCTAAAGAACGTATTC
GCTATAAGATTCATTCTACTCTTCTTTCATTCAGGCAGGAGGTGTAAAGCTGCTTCTTCTCTTTC
CTCTTCGTCAGCCTGACTTTACGATCCTAAACTACACTACATGATCTTAAACTACACTACATGAT
CCTAAACTACTACATGATCCGGAACTACTACTTATTCTGGATCTTTCACTACTGATACTGATACT
GAAAGTCAAGACTAAAGATCAAGCTAGCTAGCTACTTCCAACTCTTACACTTACTACTGCACTGG
AAGAACTGACTGACTACTGCCTCTACTGGAAGAACTAACTACTGGCCTATACTTGAACTTAACTA
CTGCCTATACTTGAACTTACTACTGTCTATACTGGAAGAACTGAC
Found at i:376470 original size:20 final size:20
Alignment explanation
Indices: 376442--376504 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
376432 CTGACTTTAC
376442 GATCCTAAACTACACTACAT
1 GATCCTAAACTACACTACAT
*
376462 GATCTTAAACTACACTACAT
1 GATCCTAAACTACACTACAT
376482 GATCCTAAACT--ACTACAT
1 GATCCTAAACTACACTACAT
376500 GATCC
1 GATCC
376505 GGAACTACTA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.29
20 29 0.71
ACGTcount: A:0.38, C:0.29, G:0.06, T:0.27
Consensus pattern (20 bp):
GATCCTAAACTACACTACAT
Left flanking sequence: Indices 375942 -- 376441
CCAACTCTGTCTGAGTCTGAACTACGTAACCTCTCTGTCCTTTACTTTACTTCGACTAAACTCCT
TATGAGTATAACCTTTCACTCTGTAAGTAGTAGTAGTTAGTTAGTCTTTCCCCTTTACCTCTCCA
ACTGCTAAACTCCTATTGATGCTTTCTCCTTTTAACTACTGATTCTTCTTTACCTGCCCTTTGGT
CTGTCAGCTTGGCTCCTGAAACTGATTGAAGGAAGTAAGTAACTCCTGATTGAAGTAAGTAAATG
GTATGATTGAAGGAAGTAAGTAAATGGTAGTTGTCTTTCCCCTACACCTCTCTGTCTCTGTCTGA
GTCTGAACTCTTTATCCGTAACCTCTCTGTCCAATTCTTCTTTCCGAAGTGAATCCTTAACTACT
TCCTTAGCCTAAAGAACGTATTCGCTATAAGATTCATTCTACTCTTCTTTCATTCAGGCAGGAGG
TGTAAAGCTGCTTCTTCTCTTTCCTCTTCGTCAGCCTGACTTTAC
Right flanking sequence: Indices 376505 -- 377004
GGAACTACTACTTATTCTGGATCTTTCACTACTGATACTGATACTGAAAGTCAAGACTAAAGATC
AAGCTAGCTAGCTACTTCCAACTCTTACACTTACTACTGCACTGGAAGAACTGACTGACTACTGC
CTCTACTGGAAGAACTAACTACTGGCCTATACTTGAACTTAACTACTGCCTATACTTGAACTTAC
TACTGTCTATACTGGAAGAACTGACTACTGCCTACTTACACTTCCTATCCCTACTGTACTGAGAT
TACACTTCCAACTGCCTACTCATTAAGCTCTATTCATTCATTCCCTGAGGAGAACAACCTATGTA
AGTTAGTTACTACTTGACTGACCTTCCTTCAATCCTCTAAGTAACCGAAGAGAAAGCAAGACAAG
AAGAACAACAACATTTACATTACAGGCGGGTCAAGGTCAAGCTCATTCACCTCTGTAGCAAGAGA
AGAAGAAAGAAGAAGAAGATTATTACATTACGGGAAAGAAGGGTC
Found at i:376510 original size:18 final size:18
Alignment explanation
Indices: 376455--376515 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
376445 CCTAAACTAC
**
376455 ACTACATGATCTTAAACT
1 ACTACATGATCCGAAACT
*
376473 ACACTACATGATCCTAAACT
1 --ACTACATGATCCGAAACT
*
376493 ACTACATGATCCGGAACT
1 ACTACATGATCCGAAACT
376511 ACTAC
1 ACTAC
376516 TTATTCTGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
18 21 0.55
20 17 0.45
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.26
Consensus pattern (18 bp):
ACTACATGATCCGAAACT
Left flanking sequence: Indices 375955 -- 376454
AGTCTGAACTACGTAACCTCTCTGTCCTTTACTTTACTTCGACTAAACTCCTTATGAGTATAACC
TTTCACTCTGTAAGTAGTAGTAGTTAGTTAGTCTTTCCCCTTTACCTCTCCAACTGCTAAACTCC
TATTGATGCTTTCTCCTTTTAACTACTGATTCTTCTTTACCTGCCCTTTGGTCTGTCAGCTTGGC
TCCTGAAACTGATTGAAGGAAGTAAGTAACTCCTGATTGAAGTAAGTAAATGGTATGATTGAAGG
AAGTAAGTAAATGGTAGTTGTCTTTCCCCTACACCTCTCTGTCTCTGTCTGAGTCTGAACTCTTT
ATCCGTAACCTCTCTGTCCAATTCTTCTTTCCGAAGTGAATCCTTAACTACTTCCTTAGCCTAAA
GAACGTATTCGCTATAAGATTCATTCTACTCTTCTTTCATTCAGGCAGGAGGTGTAAAGCTGCTT
CTTCTCTTTCCTCTTCGTCAGCCTGACTTTACGATCCTAAACTAC
Right flanking sequence: Indices 376516 -- 377015
TTATTCTGGATCTTTCACTACTGATACTGATACTGAAAGTCAAGACTAAAGATCAAGCTAGCTAG
CTACTTCCAACTCTTACACTTACTACTGCACTGGAAGAACTGACTGACTACTGCCTCTACTGGAA
GAACTAACTACTGGCCTATACTTGAACTTAACTACTGCCTATACTTGAACTTACTACTGTCTATA
CTGGAAGAACTGACTACTGCCTACTTACACTTCCTATCCCTACTGTACTGAGATTACACTTCCAA
CTGCCTACTCATTAAGCTCTATTCATTCATTCCCTGAGGAGAACAACCTATGTAAGTTAGTTACT
ACTTGACTGACCTTCCTTCAATCCTCTAAGTAACCGAAGAGAAAGCAAGACAAGAAGAACAACAA
CATTTACATTACAGGCGGGTCAAGGTCAAGCTCATTCACCTCTGTAGCAAGAGAAGAAGAAAGAA
GAAGAAGATTATTACATTACGGGAAAGAAGGGTCAAGGTCAAGCT
Found at i:376655 original size:25 final size:22
Alignment explanation
Indices: 376645--376733 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 22
376635 CTCTACTGGA
376645 AGAACTAACTACTGGCCTATACT
1 AGAACTAACTACT-GCCTATACT
*
376668 TGAACTTAACTACTGCCTATACT
1 AGAAC-TAACTACTGCCTATACT
* * *
376691 TGAACTTACTACTGTCTATACT
1 AGAACTAACTACTGCCTATACT
*
376713 GGAAGAACTGACTACTGCCTA
1 ---AGAACTAACTACTGCCTA
376734 CTTACACTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.27
23 18 0.32
24 8 0.14
25 15 0.27
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (22 bp):
AGAACTAACTACTGCCTATACT
Left flanking sequence: Indices 376145 -- 376644
TTGGCTCCTGAAACTGATTGAAGGAAGTAAGTAACTCCTGATTGAAGTAAGTAAATGGTATGATT
GAAGGAAGTAAGTAAATGGTAGTTGTCTTTCCCCTACACCTCTCTGTCTCTGTCTGAGTCTGAAC
TCTTTATCCGTAACCTCTCTGTCCAATTCTTCTTTCCGAAGTGAATCCTTAACTACTTCCTTAGC
CTAAAGAACGTATTCGCTATAAGATTCATTCTACTCTTCTTTCATTCAGGCAGGAGGTGTAAAGC
TGCTTCTTCTCTTTCCTCTTCGTCAGCCTGACTTTACGATCCTAAACTACACTACATGATCTTAA
ACTACACTACATGATCCTAAACTACTACATGATCCGGAACTACTACTTATTCTGGATCTTTCACT
ACTGATACTGATACTGAAAGTCAAGACTAAAGATCAAGCTAGCTAGCTACTTCCAACTCTTACAC
TTACTACTGCACTGGAAGAACTGACTGACTACTGCCTCTACTGGA
Right flanking sequence: Indices 376734 -- 377233
CTTACACTTCCTATCCCTACTGTACTGAGATTACACTTCCAACTGCCTACTCATTAAGCTCTATT
CATTCATTCCCTGAGGAGAACAACCTATGTAAGTTAGTTACTACTTGACTGACCTTCCTTCAATC
CTCTAAGTAACCGAAGAGAAAGCAAGACAAGAAGAACAACAACATTTACATTACAGGCGGGTCAA
GGTCAAGCTCATTCACCTCTGTAGCAAGAGAAGAAGAAAGAAGAAGAAGATTATTACATTACGGG
AAAGAAGGGTCAAGGTCAAGCTCATTCACTTATAGAGCACAAGAAGAAGAAGATTCATTACGAGA
AGGTAATGCTACTAAACGAGACAAGAAGAACTACAAGATAATTATATTACAGGAGGGGGAGAGTA
ACGCTAACCTAACGTCTCGAACAAGAAGAAGAAGAAAGATTCAATTCATTACAGGAAGGAAGGTA
AAGTCAGACCTGACGAAGAACAACTGAATTACAAGCAAGAAGGGG
Found at i:376685 original size:23 final size:23
Alignment explanation
Indices: 376646--376712 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
376636 TCTACTGGAA
376646 GAAC-TAACTACTGGCCTATACTT
1 GAACTTAACTACT-GCCTATACTT
376669 GAACTTAACTACTGCCTATACTT
1 GAACTTAACTACTGCCTATACTT
*
376692 GAACTT-ACTACTGTCTATACT
1 GAACTTAACTACTGCCTATACT
376713 GGAAGAACTG
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
22 14 0.33
23 20 0.48
24 8 0.19
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.34
Consensus pattern (23 bp):
GAACTTAACTACTGCCTATACTT
Left flanking sequence: Indices 376146 -- 376645
TGGCTCCTGAAACTGATTGAAGGAAGTAAGTAACTCCTGATTGAAGTAAGTAAATGGTATGATTG
AAGGAAGTAAGTAAATGGTAGTTGTCTTTCCCCTACACCTCTCTGTCTCTGTCTGAGTCTGAACT
CTTTATCCGTAACCTCTCTGTCCAATTCTTCTTTCCGAAGTGAATCCTTAACTACTTCCTTAGCC
TAAAGAACGTATTCGCTATAAGATTCATTCTACTCTTCTTTCATTCAGGCAGGAGGTGTAAAGCT
GCTTCTTCTCTTTCCTCTTCGTCAGCCTGACTTTACGATCCTAAACTACACTACATGATCTTAAA
CTACACTACATGATCCTAAACTACTACATGATCCGGAACTACTACTTATTCTGGATCTTTCACTA
CTGATACTGATACTGAAAGTCAAGACTAAAGATCAAGCTAGCTAGCTACTTCCAACTCTTACACT
TACTACTGCACTGGAAGAACTGACTGACTACTGCCTCTACTGGAA
Right flanking sequence: Indices 376713 -- 377212
GGAAGAACTGACTACTGCCTACTTACACTTCCTATCCCTACTGTACTGAGATTACACTTCCAACT
GCCTACTCATTAAGCTCTATTCATTCATTCCCTGAGGAGAACAACCTATGTAAGTTAGTTACTAC
TTGACTGACCTTCCTTCAATCCTCTAAGTAACCGAAGAGAAAGCAAGACAAGAAGAACAACAACA
TTTACATTACAGGCGGGTCAAGGTCAAGCTCATTCACCTCTGTAGCAAGAGAAGAAGAAAGAAGA
AGAAGATTATTACATTACGGGAAAGAAGGGTCAAGGTCAAGCTCATTCACTTATAGAGCACAAGA
AGAAGAAGATTCATTACGAGAAGGTAATGCTACTAAACGAGACAAGAAGAACTACAAGATAATTA
TATTACAGGAGGGGGAGAGTAACGCTAACCTAACGTCTCGAACAAGAAGAAGAAGAAAGATTCAA
TTCATTACAGGAAGGAAGGTAAAGTCAGACCTGACGAAGAACAAC
Found at i:377755 original size:18 final size:19
Alignment explanation
Indices: 377732--377770 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
377722 AATCAATCAA
377732 ACTTACCT-GCTCTGGCTT
1 ACTTACCTCGCTCTGGCTT
377750 ACTTACCTGCGCTCTGGCTT
1 ACTTACCT-CGCTCTGGCTT
377770 A
1 A
377771 ACTGCTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
20 11 0.58
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (19 bp):
ACTTACCTCGCTCTGGCTT
Left flanking sequence: Indices 377232 -- 377731
GGTAAAGCTTACCTGACGAGACAAGAAGAAGAAGAAGATTATTACATTACAGGAAAGGGTCGGTC
AAGTCCTCTCTTCTAAGTCACCTCTGGAGCAAGCAAGCCACTAAGATTCATTACATCCGGGAAAG
GGGGTAAAGCTAATAACCTAATAACGTCTGGAGAAGGCAAGCAGCAGGCAAGCAAGAACAAGATA
TGAATTACAGGCTGGAAGGGGTCAAGTTAACCTAACGTCTTCGAGCAAGCCAACTAACTACATTG
TAAGGTCAAGTACCCTCTTCTGGTCTAGAGCAAGAACTAGATTTACATTACAGGAAGGGTAAACG
TACCTGACGTCTCGAGAAAGAGAAAGAAGAAGACAAGATATGAATTACAGACGGAAAGGTAAACT
CATTCACCTACAAGAGCAAGAAGAACAAGATTTATTACATACGGAAAGGTCAGGCTAACCTTTCT
TTACAATCTGCTTCATAGTCTTTAGTTAGAGAATCAATCAATCAA
Right flanking sequence: Indices 377771 -- 378270
ACTGCTCACAAACTTACCTGCTTTGGCTGGCTTGGCTTAACCTGTTCCTTCATTCACCTATTCGT
CTTGAATTGACTTTCTTGTAAACTTATGACCCTTCCCATGAACCTTGTCCTGAGTTTACAGTCAA
CGAGAGAAGGGAGACTCAACAAGCGGAATTAGAGATTGTAATAAGAAAAAGGAGAACCTCTTTCT
GTCTTACCTGTCGAAAGAGAGAGAACTAACTAACCGCTGCCCTATAGTAGTACGATATGTATTCC
CTGACCGAGACTCATCAAGTAAAGACTAAGAAGATCGTTTCCGGGCCCGGGCTCGGCTGTCTTGA
ACTGCTTGCTTTTACTCCTTCCCTGCTATTCCCTTCACTATTGATTGATTAATGATCTGTCACAG
TCAGTCTCGACTTCACTCTTTATTATATATAGAGAGTTTACGGGTTAGGCCGGACTATTATATAC
TGATTGATGCTTTCTTCCTTGGTGTGTTGGAAGGAAGAGGCACTG
Found at i:380031 original size:18 final size:18
Alignment explanation
Indices: 380008--380060 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
379998 TCTATAGAAA
380008 GCAAGAGAAGTAGATATT
1 GCAAGAGAAGTAGATATT
*
380026 GCAAGAGAAGTAGGTATT
1 GCAAGAGAAGTAGATATT
*
380044 GCAAGAGAGGTAGATAT
1 GCAAGAGAAGTAGATAT
380061 GAATTACTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.42, C:0.06, G:0.32, T:0.21
Consensus pattern (18 bp):
GCAAGAGAAGTAGATATT
Left flanking sequence: Indices 379508 -- 380007
TATCCTACTCCCTACTACTTACATTACACTTAGAACTCTTTACTCCCTATCTACTTTAGATTAGA
CCTACTCTCTACTTTCACTTAGAACTACTTACTCATTAAGGAGCTAGCGATCCTACTCATTAATT
AAGCTCTACTGCCTACAAGCTGCTCTACTCTATTCCTTGACGAGGATAACCTATTATGTTACACC
TTTTCAATCCTCTAACTGAGGAGAAAGCAAGAGAAGAAGATTGATTTCTTACAAGAGGGTAATGC
TAACTAACCTAACGTGACGAGTAAAGAAAGACTGAACCAACAACACAACTTATTCATTCCGTAAA
GCAAGAGAAGCAGATAGGAATTACTACATACAAGAAGGTCAGTCAAGCTCACTCATTAACTTGCC
GAGACAGCAAGAGAAGAAGATTTATTACATCCGGGAAGGAAGGTAATGATGCTACTATAACACTC
TTAATAACCTAACCTATAACCCTTACAACATAACCTCTATAGAAA
Right flanking sequence: Indices 380061 -- 380560
GAATTACTACAAGAAGGTCACAGTCAAGCTCACTCATTAACTTGCCGAGAAAGCTGCAAGAGAAG
AAGAAAGAGATTTATTACATCCCGGCGGAAGGTCATGCTACTAACTTGACGAGACACCAGGAACA
ACAAGATTTATTACAGGAAGGAAGTTCAAGCTAACCTCTCTCTGGTCTAGAACAAGAAGCAAGAG
TATGAGAAGGAAGCTCAAGTAAGACCTGACGAAGGAAGAACAACTGAATTACAAGCAGCAAGAAG
AGGTAACTCACCTGACGAAGAGAAGAACTTAATTGACATTACATACAGGAAGCTCAAATACTCTC
TTAGAAGTTACCTCGGGAGCAAGCAACAAGCAAGCCAGCCAACAACATTCATTACATACTAAAGA
GGTCAAGCTAACCCAACCTGACGAGAAAGAAAGCAAGCAGCAGGCAAGCAACCAAGTAAGCAACA
ACAACATATTCAATTCATTACACGGGAAGGAGTCAAGTTAACCTA
Found at i:381117 original size:49 final size:49
Alignment explanation
Indices: 380943--381200 Score: 245
Period size: 47 Copynumber: 5.3 Consensus size: 49
380933 AGAGCATTAG
* * * **
380943 ACATTACAGAAAGGTCAGTCAAGCTCCAGCTATTCCGGAAGAACACCATTT
1 ACATTACAGAAAGG--GGTAAAGCTACAGCTATTCCGGAAGAACAAGATTT
* * * ** **
380994 CCATTACAGAAA--GGTAAAGCTACAGCTATTACAGAACTACACCATTT
1 ACATTACAGAAAGGGGTAAAGCTACAGCTATTCCGGAAGAACAAGATTT
*
381041 CCATTACAGAAA--GGTAAAGCTACAGCTATTCCGGAAGAACAAGATTT
1 ACATTACAGAAAGGGGTAAAGCTACAGCTATTCCGGAAGAACAAGATTT
* * * * *
381088 AGATTCCAGAAGGGGGTCAAGTTACAGCTATTCCGGAAGAACAAGATTT
1 ACATTACAGAAAGGGGTAAAGCTACAGCTATTCCGGAAGAACAAGATTT
* * ** *
381137 CCATTACAGAAAGGGGTAAAGCTCCAGCTATTATGGAAGAACAACATTTT
1 ACATTACAGAAAGGGGTAAAGCTACAGCTATTCCGGAAGAACAAGA-TTT
*
381187 ACATTACGGAAAGG
1 ACATTACAGAAAGG
381201 TCAAGGCTGG
Statistics
Matches: 172, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
47 77 0.45
49 69 0.40
50 15 0.09
51 11 0.06
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (49 bp):
ACATTACAGAAAGGGGTAAAGCTACAGCTATTCCGGAAGAACAAGATTT
Left flanking sequence: Indices 380443 -- 380942
ACTAAAGAGGTCAAGCTAACCCAACCTGACGAGAAAGAAAGCAAGCAGCAGGCAAGCAACCAAGT
AAGCAACAACAACATATTCAATTCATTACACGGGAAGGAGTCAAGTTAACCTAACCTGACGAGAA
AGAAAGCAAGCAGCAGGCAAGCTGACGCTAGTCTAGAACAAGAACTAACTACAAGAAATCTGATT
AACTACATACGGAAAGCTCAAGCTGACGTGACGAACACAACAACTATATTTAGATTACAGAAGGG
TAAAGCTGACCTGACGTGACGAGAAAGAACAAGAGAAGATATTCATTACATACAGAACAGAAAGA
GAAGCTGCTCACTCACTCACCTATAGCTGCTATAGAGCAAGCAACCAAGCAAGACAGACAAGAAG
ATTCATTACATACGGAAAGGTAGTAAAGCTAATCTAACGTCAAGAAGAACTGCGGATACATTACT
ACGGAAGGTTCATTCAAGCTTACCTGACAAGAAGAAGAGCATTAG
Right flanking sequence: Indices 381201 -- 381700
TCAAGGCTGGCTAATCTAACGGCTAGAACAAGAACAACAAGAACAACATTTACTACATTACAAAA
GCAAGAAGGTCAAGGTCAAGAGGAAGAAGGTCAAGAGCAAGAGCAAGAAGGTCAAGGTCAAGCTA
CTAACCTGCCAAGAACTTAATTTACATTACGGAAGGTTCAAGCTGACGCTATTCTAGAACAACAA
GAAGAAGAACATTTACAGGAAGGTTCTCAAGTTCTAGCTAGTCATGAGCAAGACAAACACCAACA
TTTACAGAAAGGTAAAGTAATCTAACGTGACGAACAAGACAAACAACAAGACAAGATGAATAACA
TACGGAAAGAGAAGCAGCTGCTCACTCACCTATCGAGCAAGCAACCAAGACAGACAACAAACAAC
ATTCTAATTACTACGGAAGGGTAAAGCTAATCTCTACTAATCTAACGTCAAGAAGAACTACTGAT
ACAGAAATTACTACAGAAGGGTCGTCAAGCTAACCTTATGTCTAT
Found at i:381293 original size:21 final size:21
Alignment explanation
Indices: 381265--381327 Score: 101
Period size: 21 Copynumber: 3.0 Consensus size: 21
381255 ACATTACAAA
381265 AGCAAGAAGGTCAAGGTCAAG
1 AGCAAGAAGGTCAAGGTCAAG
*
381286 AGGAAGAAGGTCAAGAG-CAAG
1 AGCAAGAAGGTCAAG-GTCAAG
381307 AGCAAGAAGGTCAAGGTCAAG
1 AGCAAGAAGGTCAAGGTCAAG
381328 CTACTAACCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.03
21 36 0.95
22 1 0.03
ACGTcount: A:0.44, C:0.13, G:0.35, T:0.08
Consensus pattern (21 bp):
AGCAAGAAGGTCAAGGTCAAG
Left flanking sequence: Indices 380765 -- 381264
AGAGAAGCTGCTCACTCACTCACCTATAGCTGCTATAGAGCAAGCAACCAAGCAAGACAGACAAG
AAGATTCATTACATACGGAAAGGTAGTAAAGCTAATCTAACGTCAAGAAGAACTGCGGATACATT
ACTACGGAAGGTTCATTCAAGCTTACCTGACAAGAAGAAGAGCATTAGACATTACAGAAAGGTCA
GTCAAGCTCCAGCTATTCCGGAAGAACACCATTTCCATTACAGAAAGGTAAAGCTACAGCTATTA
CAGAACTACACCATTTCCATTACAGAAAGGTAAAGCTACAGCTATTCCGGAAGAACAAGATTTAG
ATTCCAGAAGGGGGTCAAGTTACAGCTATTCCGGAAGAACAAGATTTCCATTACAGAAAGGGGTA
AAGCTCCAGCTATTATGGAAGAACAACATTTTACATTACGGAAAGGTCAAGGCTGGCTAATCTAA
CGGCTAGAACAAGAACAACAAGAACAACATTTACTACATTACAAA
Right flanking sequence: Indices 381328 -- 381827
CTACTAACCTGCCAAGAACTTAATTTACATTACGGAAGGTTCAAGCTGACGCTATTCTAGAACAA
CAAGAAGAAGAACATTTACAGGAAGGTTCTCAAGTTCTAGCTAGTCATGAGCAAGACAAACACCA
ACATTTACAGAAAGGTAAAGTAATCTAACGTGACGAACAAGACAAACAACAAGACAAGATGAATA
ACATACGGAAAGAGAAGCAGCTGCTCACTCACCTATCGAGCAAGCAACCAAGACAGACAACAAAC
AACATTCTAATTACTACGGAAGGGTAAAGCTAATCTCTACTAATCTAACGTCAAGAAGAACTACT
GATACAGAAATTACTACAGAAGGGTCGTCAAGCTAACCTTATGTCTATAACAACAACAAGAAGAT
TAATTACAGGAAGGTAAAGTAACCTGCCGAGGAGAAGAACAGCATCATCATCATCAATCAATCAG
AATTACTACAAGCAAAAGAAGGGTAACGCTAATCTGACGTCAAGA
Found at i:381321 original size:15 final size:15
Alignment explanation
Indices: 381277--381307 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
381267 CAAGAAGGTC
*
381277 AAGGTCAAGAGGAAG
1 AAGGTCAAGAGCAAG
381292 AAGGTCAAGAGCAAG
1 AAGGTCAAGAGCAAG
381307 A
1 A
381308 GCAAGAAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.10, G:0.35, T:0.06
Consensus pattern (15 bp):
AAGGTCAAGAGCAAG
Left flanking sequence: Indices 380777 -- 381276
CACTCACTCACCTATAGCTGCTATAGAGCAAGCAACCAAGCAAGACAGACAAGAAGATTCATTAC
ATACGGAAAGGTAGTAAAGCTAATCTAACGTCAAGAAGAACTGCGGATACATTACTACGGAAGGT
TCATTCAAGCTTACCTGACAAGAAGAAGAGCATTAGACATTACAGAAAGGTCAGTCAAGCTCCAG
CTATTCCGGAAGAACACCATTTCCATTACAGAAAGGTAAAGCTACAGCTATTACAGAACTACACC
ATTTCCATTACAGAAAGGTAAAGCTACAGCTATTCCGGAAGAACAAGATTTAGATTCCAGAAGGG
GGTCAAGTTACAGCTATTCCGGAAGAACAAGATTTCCATTACAGAAAGGGGTAAAGCTCCAGCTA
TTATGGAAGAACAACATTTTACATTACGGAAAGGTCAAGGCTGGCTAATCTAACGGCTAGAACAA
GAACAACAAGAACAACATTTACTACATTACAAAAGCAAGAAGGTC
Right flanking sequence: Indices 381308 -- 381807
GCAAGAAGGTCAAGGTCAAGCTACTAACCTGCCAAGAACTTAATTTACATTACGGAAGGTTCAAG
CTGACGCTATTCTAGAACAACAAGAAGAAGAACATTTACAGGAAGGTTCTCAAGTTCTAGCTAGT
CATGAGCAAGACAAACACCAACATTTACAGAAAGGTAAAGTAATCTAACGTGACGAACAAGACAA
ACAACAAGACAAGATGAATAACATACGGAAAGAGAAGCAGCTGCTCACTCACCTATCGAGCAAGC
AACCAAGACAGACAACAAACAACATTCTAATTACTACGGAAGGGTAAAGCTAATCTCTACTAATC
TAACGTCAAGAAGAACTACTGATACAGAAATTACTACAGAAGGGTCGTCAAGCTAACCTTATGTC
TATAACAACAACAAGAAGATTAATTACAGGAAGGTAAAGTAACCTGCCGAGGAGAAGAACAGCAT
CATCATCATCAATCAATCAGAATTACTACAAGCAAAAGAAGGGTA
Found at i:382041 original size:51 final size:52
Alignment explanation
Indices: 381941--382054 Score: 151
Period size: 51 Copynumber: 2.2 Consensus size: 52
381931 GAAGAGCTAC
* * * * *
381941 ATTTCCATTACAGCCGGGTAAAGCTGACGCTTGTGACGAAGGAAGAACAA-G
1 ATTTCCATTACGGCCGGGTAAAGCTGACGCTAGTCACGAAAGAACAACAACG
*
381992 ATTTCCATTACGGCCGGGTAAAGCTGACGCTAGTCATGAAAGAACAACAACG
1 ATTTCCATTACGGCCGGGTAAAGCTGACGCTAGTCACGAAAGAACAACAACG
*
382044 -TTTACATTACG
1 ATTTCCATTACG
382055 TAGGGGTAGG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 54 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (52 bp):
ATTTCCATTACGGCCGGGTAAAGCTGACGCTAGTCACGAAAGAACAACAACG
Left flanking sequence: Indices 381441 -- 381940
GAGCAAGACAAACACCAACATTTACAGAAAGGTAAAGTAATCTAACGTGACGAACAAGACAAACA
ACAAGACAAGATGAATAACATACGGAAAGAGAAGCAGCTGCTCACTCACCTATCGAGCAAGCAAC
CAAGACAGACAACAAACAACATTCTAATTACTACGGAAGGGTAAAGCTAATCTCTACTAATCTAA
CGTCAAGAAGAACTACTGATACAGAAATTACTACAGAAGGGTCGTCAAGCTAACCTTATGTCTAT
AACAACAACAAGAAGATTAATTACAGGAAGGTAAAGTAACCTGCCGAGGAGAAGAACAGCATCAT
CATCATCAATCAATCAGAATTACTACAAGCAAAAGAAGGGTAACGCTAATCTGACGTCAAGAGGA
GCTGCGGATACACAAATTACTACGGAAGGGTAAAGCTTACCTGACGTCTCAAGAGTAGCTACATT
TCCATTACGGAAGGGTAACGTTTCCCTCTGGTCAAGAAGAGCTAC
Right flanking sequence: Indices 382055 -- 382554
TAGGGGTAGGTAAAGCTTACCTCTGGTCAAGAAGAACTACGGATACATTACGGGCAAGAAGGTCA
AGTCTTCTGACGTGCCCCGAACAACAACAATAACAACAGTTACATTACGGCCGGGTAAAGCTGAC
GCTATTCGAGAGCAAGAGCTACATTTCCATTACAGAAAAGAAGGTCAAGTTACTAACCTTTAAAA
GAAGGTCAAGTTATAACCTTTAAAAGAAGAAGGGAAGGGTAAAGTTACTAACCTGACGAAAGAAG
AAGGTCAAGTTAAGTTACTAACCTGACGAAGAGAAGACAACAACAACAACATTACAGGAAAGTCA
GGTCAAGTTACTACCTTGACGAAGAGAAGACCAATAACAACATTTACAGTAAGGAAGGTCAAGCT
GACGCTAGTCTAGAACAACTCCAATCATTACATACTACAGAAAGTTGAAGTGAAACTCTATTCAT
GAGAAAGCAAGAGAAAGAACAAGAAAGAAAACAAACAACAACATT
Found at i:382272 original size:25 final size:26
Alignment explanation
Indices: 382220--382278 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
382210 TCCATTACAG
382220 AAAAGAAGGTCAAGTTACTAACCTTT
1 AAAAGAAGGTCAAGTTACTAACCTTT
382246 AAAAGAAGGTCAAGTTA-TAACCTTT
1 AAAAGAAGGTCAAGTTACTAACCTTT
382271 AAAAGAAG
1 AAAAGAAG
382279 AAGGGAAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 16 0.48
26 17 0.52
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.24
Consensus pattern (26 bp):
AAAAGAAGGTCAAGTTACTAACCTTT
Left flanking sequence: Indices 381720 -- 382219
ATTACAGGAAGGTAAAGTAACCTGCCGAGGAGAAGAACAGCATCATCATCATCAATCAATCAGAA
TTACTACAAGCAAAAGAAGGGTAACGCTAATCTGACGTCAAGAGGAGCTGCGGATACACAAATTA
CTACGGAAGGGTAAAGCTTACCTGACGTCTCAAGAGTAGCTACATTTCCATTACGGAAGGGTAAC
GTTTCCCTCTGGTCAAGAAGAGCTACATTTCCATTACAGCCGGGTAAAGCTGACGCTTGTGACGA
AGGAAGAACAAGATTTCCATTACGGCCGGGTAAAGCTGACGCTAGTCATGAAAGAACAACAACGT
TTACATTACGTAGGGGTAGGTAAAGCTTACCTCTGGTCAAGAAGAACTACGGATACATTACGGGC
AAGAAGGTCAAGTCTTCTGACGTGCCCCGAACAACAACAATAACAACAGTTACATTACGGCCGGG
TAAAGCTGACGCTATTCGAGAGCAAGAGCTACATTTCCATTACAG
Right flanking sequence: Indices 382279 -- 382778
AAGGGAAGGGTAAAGTTACTAACCTGACGAAAGAAGAAGGTCAAGTTAAGTTACTAACCTGACGA
AGAGAAGACAACAACAACAACATTACAGGAAAGTCAGGTCAAGTTACTACCTTGACGAAGAGAAG
ACCAATAACAACATTTACAGTAAGGAAGGTCAAGCTGACGCTAGTCTAGAACAACTCCAATCATT
ACATACTACAGAAAGTTGAAGTGAAACTCTATTCATGAGAAAGCAAGAGAAAGAACAAGAAAGAA
AACAAACAACAACATTCATTCCAAGCAAGCCTGGTAAAGGTAAACTCTATTACAAATAGAAATAG
AATAAGGAATAGTGATATATATCTCTCCCCCCTTGACCACTTACGATATTTCTTTGTGATTGAAA
TGAGATTTCTTTGTGATTCGAGATTTCTTTGTGATTGAAAAAGGACTAAATATTGATTGATGAAT
TAGAGTGAACTGTCAGACTAGACTAAAGCCAAGGAGTTTACGGTG
Found at i:382679 original size:22 final size:22
Alignment explanation
Indices: 382646--382708 Score: 80
Period size: 18 Copynumber: 3.0 Consensus size: 22
382636 TTGACCACTT
*
382646 ACGATATTTCTTTGTGATTGAA
1 ACGAGATTTCTTTGTGATTGAA
*
382668 ATGAGATTTCTTTGTGATT---
1 ACGAGATTTCTTTGTGATTGAA
382687 -CGAGATTTCTTTGTGATTGAA
1 ACGAGATTTCTTTGTGATTGAA
382708 A
1 A
382709 AAGGACTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
18 17 0.50
22 17 0.50
ACGTcount: A:0.25, C:0.08, G:0.21, T:0.46
Consensus pattern (22 bp):
ACGAGATTTCTTTGTGATTGAA
Left flanking sequence: Indices 382146 -- 382645
ACAATAACAACAGTTACATTACGGCCGGGTAAAGCTGACGCTATTCGAGAGCAAGAGCTACATTT
CCATTACAGAAAAGAAGGTCAAGTTACTAACCTTTAAAAGAAGGTCAAGTTATAACCTTTAAAAG
AAGAAGGGAAGGGTAAAGTTACTAACCTGACGAAAGAAGAAGGTCAAGTTAAGTTACTAACCTGA
CGAAGAGAAGACAACAACAACAACATTACAGGAAAGTCAGGTCAAGTTACTACCTTGACGAAGAG
AAGACCAATAACAACATTTACAGTAAGGAAGGTCAAGCTGACGCTAGTCTAGAACAACTCCAATC
ATTACATACTACAGAAAGTTGAAGTGAAACTCTATTCATGAGAAAGCAAGAGAAAGAACAAGAAA
GAAAACAAACAACAACATTCATTCCAAGCAAGCCTGGTAAAGGTAAACTCTATTACAAATAGAAA
TAGAATAAGGAATAGTGATATATATCTCTCCCCCCTTGACCACTT
Right flanking sequence: Indices 382709 -- 383208
AAGGACTAAATATTGATTGATGAATTAGAGTGAACTGTCAGACTAGACTAAAGCCAAGGAGTTTA
CGGTGTTTGAATAAATAGGTGAAGTAACTGCATAAGAGGAACGAATAGTTTTTGTTTCAAGACTC
AAGAGCAAAGGCTTAAGCAAGATGCGTGAACTCTTTCTTTCCCCTGTCCCGTAACCAGATGGAGA
ATTTGTATTCTTTGTTTGCTTTAACTGTATGTATTCTTTGCTTTAACAGTGAAAGTCTTCTTTAA
GGAAAGCTTGGTATTTGTTATTCTGTCTGGCAGCTTCGCACTTTAGCTTAGCTTTTGTCTCCCTA
ACTCTTTCCTTCACCGGCTTTCCTCTCTCTCTGGCCGTAACCTCTTTCTTCGTAGGACTTAACGT
AACTAACTACTCTCTCTGCTTATTGGTCTCTGACTGACTCATTATAGACTCAACGCCTCTTTCCT
TTGTCTGTCCCTTCTTGAACAGTGTAAGATGAAGAGGAGGGTCAA
Found at i:384029 original size:18 final size:18
Alignment explanation
Indices: 384006--384041 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
383996 GCCAGGAAGC
384006 TACTTACTCTCTCTCCTG
1 TACTTACTCTCTCTCCTG
384024 TACTTACTCTCTCTCCTG
1 TACTTACTCTCTCTCCTG
384042 ATTGAAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.39, G:0.06, T:0.44
Consensus pattern (18 bp):
TACTTACTCTCTCTCCTG
Left flanking sequence: Indices 383506 -- 384005
CCTCGTGAACGGGGCTGACGCTATTCTAGAACAAGAGAAAGCTGTCTTCAGCTTGATGACTGACT
TGACTGAGAACTAACTACTCTTTACAATCAATCCCGTATTTGTGTTCGCAATCCGTCGGCTCCAC
AGTAAGCTCTCATCGGGTATTTCAACTGACACTGAAGAGGATCAGTGAAGGTAAGCTGATTCCGC
TATCCTTGGAACAAGTAATCTACTCCTTAACTCTCTTTGTAATTATCCTGAACTCTTTTCATTCT
CTTTAACTAACTCTCTTTCACCTGACCTGGATGGAAAACTATTAACTCTTCTTTCACCTGCTGCC
CTGTAACCACTAGAAGAAGGAAGAAGTGTCTTCGCTCCGATCGATTGATTCCTAGCTAGTTCGTT
CGTTCGTTCACTCCGTCCTACACCTATCTTTTGCTTATTCTGAATTCCTTTCCAGTGGAGACTAA
AAGGAAAGCAAAGATTAATCTAATCAGACTTGCTTGCCAGGAAGC
Right flanking sequence: Indices 384042 -- 384541
ATTGAAGAAGGGGTAAAGAAAGACTACTACACTTGATCTGCTTGCTGCTCTTCCTGCCCTCTCCT
CTCCAATCTAATCTCTTCCTGCCTTCTCCTCTCCAATTACAACAAGGGTAACTACAACAGGGGTT
GAACTAGCTCCCTCACTGGTATTACCCGAGCTAAGCTACTTCATTCAATCCGGAGGAAAGCTCTT
ACCTAACCTACTTCACTTCACTCATGAAATCCGAAAGTTCTATTCTATTCCATTGCTGTAACCTT
AATACTCTGTCTATTCGATATTACCGAGTATATTGTTAGTTACCTTTCTTTGTTAGTTATAGAGT
TTAGTTACCTTTTTAGTTAGTATATTAAACAACAACAAAGCAAAGAAAGACTGACTAAAGCTGAA
CCTTAAACCTAAAGAACAAGTAATAAAGCCAGAAGAGAGTTCGTTTATTGGTTTCTAGTCTTTAA
AAGGAAAGGGGGTTAGAAGCTATCCTTTCTTATCTTCTTTCTTTA
Found at i:385334 original size:23 final size:21
Alignment explanation
Indices: 385308--385355 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
385298 TTCATTCATT
385308 CTTTCTCCTTAACTAACTAACTA
1 CTTTCTCC-T-ACTAACTAACTA
*
385331 C-TT-TGCTACTAACTAACTA
1 CTTTCTCCTACTAACTAACTA
385350 CTTTCT
1 CTTTCT
385356 GACGACTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
19 13 0.59
20 3 0.14
21 3 0.14
22 2 0.09
23 1 0.05
ACGTcount: A:0.27, C:0.29, G:0.02, T:0.42
Consensus pattern (21 bp):
CTTTCTCCTACTAACTAACTA
Left flanking sequence: Indices 384808 -- 385307
CTCAAGCAAGAGAAGAAGAAGAAAGAGAAGGAGGCGGGCGGACTAAAGAACCATTAATTCATTCC
ATTCCCCTTGGTCGTTCTTTACTTGTTAGGTAATATATCTAATAGAAAGAATGGTTTACGGACGT
AGGGAAGAAGTAGGTGTAAACTACTGATACTGAGACTTCCTTCAAGTCAAGACTAAAGAGAGTTA
GTTTACTGTCTTTGAATAACTAGTCTAACTGCCTGCATTAATAAGCTATAGTGTTTCATTCAAGA
CTCTCCTGAACCTCTCCTACTGATTGATTGACTGAGCGTTCACTCTTTCTTTCCCCTGCCTTTGA
TGATTAACTTTCTACTCTTTGTTTGTCACTGTCAAAGTATTCTGCTGTTATTTGACTCTTCTTTT
CTTGTCTGTCTGCTTCACGCCTTACCTTAGCTTTTGTCTTCTACTCACTGTAAGATCAAGCATTC
AAGTTGTTCACTCCTATACCTATGTTCTTCATTCATTCATTCATT
Right flanking sequence: Indices 385356 -- 385855
GACGACTGAAGTACTTTCTCTGACTTCACTCCTCGTCGGTAAAGGGTAAAGAAAAGGATGGATAT
GGGGCTTCTTTCTTTGCTTCTGCTTTCTTGATTGAAGAGTAAGCGCGTAAACTAAGACTGAACGA
AAGATTCATGATCCTATCCTGATTGAACGAGGGTTGAACTATCTCTTTGAGAGAACGAGGTTCTA
ATAGGTCTTTCTTTGTTTCTTTCTTTAAGTCAGGTTGTTTAAGGAAAGATGAATGAGAGAGACGG
AACCATTTTATCCTCTACCTATTTTTAGGGCTATTTCTCAGGTAATTCGAAAGAGACTGAGCTAC
TTCACCTTCAAGCAACAAGAATGAGACTGATGGAACGAGGTAAAGCTATGAGACTAAACAAACTA
ACTAACTACTCTGTATTACAACAATTCTATTCGAAATCAGAAGAAGGGAGACTGAATCCGCATTA
TCCTTTCTTTACTTTACAGTGGATGAATGAGCCGGACCAGGAAGA
Found at i:386085 original size:60 final size:63
Alignment explanation
Indices: 385965--386087 Score: 173
Period size: 64 Copynumber: 2.0 Consensus size: 63
385955 GCCTTCTCCT
*
385965 TCTTTCTCTCTCTCCTCTCGTAAACTAAAGAGCTAGTTTCATTCAGTCTACTGCCCCTGCCTGA
1 TCTTTCTCTCTCTCCTCTCGTAAACTAAAGAGC-AGTCTCATTCAGTCTACTGCCCCTGCCTGA
* *
386029 TCTTTCTCTCTCTCCTCTCGTAAACTAAAGAAG-AG-CT-A-TCATTCTACTGCCTCTGCCTG
1 TCTTTCTCTCTCTCCTCTCGTAAACTAAAG-AGCAGTCTCATTCAGTCTACTGCCCCTGCCTG
386088 CCTTGCCTGC
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
60 19 0.35
61 1 0.02
62 1 0.02
63 2 0.04
64 30 0.55
65 2 0.04
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.36
Consensus pattern (63 bp):
TCTTTCTCTCTCTCCTCTCGTAAACTAAAGAGCAGTCTCATTCAGTCTACTGCCCCTGCCTGA
Left flanking sequence: Indices 385465 -- 385964
GCGTAAACTAAGACTGAACGAAAGATTCATGATCCTATCCTGATTGAACGAGGGTTGAACTATCT
CTTTGAGAGAACGAGGTTCTAATAGGTCTTTCTTTGTTTCTTTCTTTAAGTCAGGTTGTTTAAGG
AAAGATGAATGAGAGAGACGGAACCATTTTATCCTCTACCTATTTTTAGGGCTATTTCTCAGGTA
ATTCGAAAGAGACTGAGCTACTTCACCTTCAAGCAACAAGAATGAGACTGATGGAACGAGGTAAA
GCTATGAGACTAAACAAACTAACTAACTACTCTGTATTACAACAATTCTATTCGAAATCAGAAGA
AGGGAGACTGAATCCGCATTATCCTTTCTTTACTTTACAGTGGATGAATGAGCCGGACCAGGAAG
AGAAGCTCCTTACCGTGATGGAACTCGATCTACTCTCTCTGTCTTGAACAAGGTCAAGCTAGTTT
CATTCTCCTGCCTGCCCCGGCCTGCGCCTGCCTGCGCCTTCTCCT
Right flanking sequence: Indices 386088 -- 386587
CCTTGCCTGCGCCTTCTCTATCTCCTTCCTGAATGAACCTCGTAAACTAAAGCAAGCTAGCTAGG
TTTCATTCTCCTGCCCCGGCCTGCACCTGCCTTCTCTCTCTCTGTCTGCCTGCGCCTTCCTTCTC
TCCTGAACCTCCCTCGTAAACAAGGAAAGAAAGACTCAGCCACCAAGAATGCTCCTTTCCTTGCC
TCAATCACTTACTTGTCCCTTCTGTAACCTAACTCCTCTCGGTCTTCGCAGCTTCGCTCATTCGT
CCATTATATGTCTCACAGCTTCGCTCGTTCCCCTCCCTCTGCCTACTCACTCTACTTACTGACTG
ATTGACTCATTAACCTTCTTTCTTGCTTGAACTGTCCTGTCTGTAACCGAGGTTATTGTGTATCT
CGCTGCTTGGCCTGGCTGGCCCTTCCCTCTGCTCTTCGAGCATACTACTCTGCTCCTTCTTTCTT
CCCTCTCCTCTTCTCGTCTAGCTGCTTCCTGCTTCGCTGCTTTCT
Found at i:386949 original size:11 final size:11
Alignment explanation
Indices: 386933--386963 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
386923 AAAGTGTCTC
386933 TTCTCTTCTTG
1 TTCTCTTCTTG
386944 TTCTCTTCTTG
1 TTCTCTTCTTG
386955 TTCTCTTCT
1 TTCTCTTCT
386964 CTTTCCTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.29, G:0.06, T:0.65
Consensus pattern (11 bp):
TTCTCTTCTTG
Left flanking sequence: Indices 386433 -- 386932
TCTTGCTTGAACTGTCCTGTCTGTAACCGAGGTTATTGTGTATCTCGCTGCTTGGCCTGGCTGGC
CCTTCCCTCTGCTCTTCGAGCATACTACTCTGCTCCTTCTTTCTTCCCTCTCCTCTTCTCGTCTA
GCTGCTTCCTGCTTCGCTGCTTTCTTTCTTCCCTCTCCCCGGTGTTCCTTGTCTCACTCTCACTG
CTTTGCTTCTTCCCTCTCCTCTCTCCTTTACAGTCTCTAAGCTTCGCGCCTATTCTCGTGGAGCT
GCTTCCTGCTTCGCACCTTGCTTTCTTGCTCTTTCTTTCTTTCTCATTATCTGTACGTAACCTTT
CTTTGACTTTGAGGATATTCCCTATTTCTTCCTTCAACCCCAGTAACCGAAAGACTCAACTAAAG
ATTAATTCGACTTTACGGTAAGGGATATTATATGAAATTAGCAGCTTGCTTTGAAAGACCTGACC
CGATATGACCTTGCTTTACTTTATTTCTGGAGGTCAAAGTGTCTC
Right flanking sequence: Indices 386964 -- 387463
CTTTCCTTTCCCTCTTCTCGTACTTTGCTTGCTGCTCCTTAACTACTGTCCTTCACTCACCGAAC
CAGATCTGATCTCTCTCATTTCACTCTAAAGCAGCTGAGCTCCGTAACCTGTATTCCCTTGCCTG
AACTAGGGAGAGTAAGTAAACGAATCAACTGAAAGAGAAATCTTACCTTACTTACCCTTATGATT
AATGATCCTGACCCTTTCAGCTATGTTACCTTATTCATTCAATCTGGAACGGAACCTACCTATCT
ATTTCTTTTTCTTCTTCTTCCGGTTGTTAGGAAGTAGTAGTCAAGACGAAACCTCACCCCTCTCC
CTTTGGTCGAGCTCTTTCACCCCTCTCCAACTCGGTTTCATGTCTTCGACCCTGGCCTATTCATT
CATTCATTCTTCTTTCTTCCTCTTTGTTGTTACGTTAAAGCTATTTGTTTGAAGAACCTGAACCG
CACCGTACGTAACCTGATTTCAGTAGGTCTGTTCTCTTTGCTTGC
Found at i:389248 original size:29 final size:29
Alignment explanation
Indices: 389206--389270 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
389196 AGGAAGAGAG
389206 GCTCCTTTCCCTGTCGGTAAAGCTGCAAA
1 GCTCCTTTCCCTGTCGGTAAAGCTGCAAA
389235 GCTCCTTTCCCTGTCGGTAAAGCTGCAAA
1 GCTCCTTTCCCTGTCGGTAAAGCTGCAAA
389264 GCTCCTT
1 GCTCCTT
389271 CACCTCTCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.18, C:0.32, G:0.20, T:0.29
Consensus pattern (29 bp):
GCTCCTTTCCCTGTCGGTAAAGCTGCAAA
Left flanking sequence: Indices 388706 -- 389205
TACTGATGGATCCTTTCTTGCTTGCTGGGTTGTAAGGAACTTGCTTGCTTGCCTGCTTGCCTGAG
AGAGACCAGGAAGGACAGAGTCAGTAAAGAAGCTAGCTCCTTAACTTAAAGAATGTATTGTATGT
AAAGAAAGAGTAAGTCAAGCCTTCCCTGTCGAAAGAGAGAGAACAGGAAGGACAGAGTCAGTCAA
GAAGCTAGCTCCTTAAAGAGAATGTAGTATTGTAAGAAGGATAACCTCCTTCTGTCTTCCCTAAG
AAAGAATTAATTGTAAGAAGGAGAACCTCCTTCCCTCCTCCCTAAGAGAGATAACTAATAATTAG
TATCTATAGATAACTCCCTGTCCCCCTAATACTCTATTTCTTCTTTCACTGACGTGGGTTGAACT
AGGTCAAAAAGCGTCAATCAGAACCTGCCTGCGGAACCTGCCGAGAAAGAAAGAAGGGAGAGGTT
TGAGACTGAACAGTAAGTCAAGAAAGAGAAAGAACAGGAAGAGAG
Right flanking sequence: Indices 389271 -- 389770
CACCTCTCCCTATTCCCGGACCGGATTGAAGGAGTTAGCAGCAAAATAGCTTTACAGTCGGGAGA
GTAAAGAAAAGAGATAGAACCTTTACAGGAGGGGAGAGTAAGTAAATGAAAGAAGGAAGGAAGGA
GTTAGCTGCTTTGAAAGCCGAAACCAACTAACTAGAAGGAAGGGAGAGTGAACTGTCAGACTGAT
TAGACTGATCCTACTTCTTTGAACTGTAAAGCAATTCCATTGCCGGAACCAAAGACTCGATTCCC
GGACTAACTATTCTTCAAAGACTCGGTAAAGCGTCAAGAAGAACCAAAGACTCCACGGTATGACC
TTCCCTTCGCTACTTCACCGGAAGGAAAGATCAGCTCCGGAACTCAATCACTTGTCCCGTCCCCT
CTTGAACAGCTTGCTTCGCCCCTTATACGATATTGGATTGAACAGTAAACAAAGACTCAAGGAAA
GAGGAAAGCTTAATGAGAGTGAACAGGACGGAAAGAAGAAATGAA
Found at i:389957 original size:34 final size:34
Alignment explanation
Indices: 389914--389978 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
389904 GATCCTCCTT
389914 ATTCATTCTCGTTCACTGTCAGTCAATCCTCAAC
1 ATTCATTCTCGTTCACTGTCAGTCAATCCTCAAC
*
389948 ATTCTTTCTCGTTCACTGTCAGTCAATCCTC
1 ATTCATTCTCGTTCACTGTCAGTCAATCCTC
389979 TACTCAAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.20, C:0.32, G:0.09, T:0.38
Consensus pattern (34 bp):
ATTCATTCTCGTTCACTGTCAGTCAATCCTCAAC
Left flanking sequence: Indices 389414 -- 389913
AAAGCCGAAACCAACTAACTAGAAGGAAGGGAGAGTGAACTGTCAGACTGATTAGACTGATCCTA
CTTCTTTGAACTGTAAAGCAATTCCATTGCCGGAACCAAAGACTCGATTCCCGGACTAACTATTC
TTCAAAGACTCGGTAAAGCGTCAAGAAGAACCAAAGACTCCACGGTATGACCTTCCCTTCGCTAC
TTCACCGGAAGGAAAGATCAGCTCCGGAACTCAATCACTTGTCCCGTCCCCTCTTGAACAGCTTG
CTTCGCCCCTTATACGATATTGGATTGAACAGTAAACAAAGACTCAAGGAAAGAGGAAAGCTTAA
TGAGAGTGAACAGGACGGAAAGAAGAAATGAAGGAGTTAGCTCCTTGACAGGAGAGGAAAGAGGA
AATCAAGCTTAATGAGAGTGAACTGGAAGGAAAGACTATCGAAGAATCAATTCGACTTAACTGTA
AGTAAATCCGAAAGATTCCTTCTTGATCTTGATCTGATCCTCCTT
Right flanking sequence: Indices 389979 -- 390478
TACTCAAGATTCATGAGACGGGAATGAGACTGTAAACACTCCTTATTCATCATTCTCCTTTTCCT
ATTTCTTCTATCACTGTAAAAGATCAATACTCTCAATTCATTCTCCAGTCTGAACTCCTTATTCA
TTCTCGTTCACTACTTCCCCTTCACTCTGTCTTCTTCGTCTTCACTCTCTCTTCCTTCTCCTTCT
CCTTTTCCTATTTCTTCTTGACCAGTAAACTCCTTCCTGGACTATTACTTCCTCGGTAAATGGAA
TAGAAATGGGTGGGTGTTGAACTCGGTCTCCCAGCTCCGCTCCTGCTCGCTTCCTTACTTCAGTC
CGAGGATCCTCGATATGTTGATCCCCTCCCCTATCAGCTCATGATATTCTTTTTTCAGTATGTTC
TTGGTCAGAGTGATCTATATCCTCCGGGCAACGAAGTGAGGGCTATCGAGTTGGGTTTCTTTACG
CATTGCAGCTTTGTTTTGTTGGGATCTTGGCCTGGGGTCGGGTCC
Found at i:401489 original size:33 final size:31
Alignment explanation
Indices: 401449--401539 Score: 111
Period size: 29 Copynumber: 3.0 Consensus size: 31
401439 CTACTTCTCA
*
401449 GTTTCGATAGAAAAGGGAAAGCAAGTTCTCAGT
1 GTTTCGATAGAAAAGGGAAAGCAAGTGCT--GT
401482 GTTTCGATAG--AA-GGAAAGCAAGTGCTGT
1 GTTTCGATAGAAAAGGGAAAGCAAGTGCTGT
*
401510 G--ACGATAGAAAAGGGAAAGCAAGTGCTGT
1 GTTTCGATAGAAAAGGGAAAGCAAGTGCTGT
401539 G
1 G
401540 ATGAGATAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.11
28 5 0.09
29 17 0.32
30 13 0.25
31 2 0.04
33 10 0.19
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (31 bp):
GTTTCGATAGAAAAGGGAAAGCAAGTGCTGT
Left flanking sequence: Indices 400949 -- 401448
TTCCGGGCAATGAAAGCGGTAGGGCAAGTGAAAGGAGATTTGTCAGGCTTAAGGTAAAGGGCATG
AGAGAAAGAAAGTTCTTGTTTCCGCGCTCAACTATGGGAATAAGGGGAATAAGAGCTGGCGGTAA
GTGAAGAAATTCCTTCTGGTAGTGGATGCTGGTGAATCAGAGTCAAATCTCTCTTTTCTTTCGGA
AGCGAAGTCGTAACTTATACCGTTCGAAAGGCGGCCCTTATGGTTATGGATAAGGAGAAATAAAT
AGAACCGTTCGTTCTTTGCGGTTACGGTAAGCAAGTCTACTTAGTACACAACAAACACTCCTTTA
TATATAAAAGGCGAATAATTCACTTTACTGACGAGCGTGAGAGCGATGCACTTTGTCTTTTGGTT
TTGAACTTCTAAGAGCTTATAAGTCGGAACTCAAAGCTAGTGCGTTAAGCAAGCTTCTTTGTTGT
AAGGCTATCGGATTAGAGAATTCCCTCTTTTCGCCCTACTTCTCA
Right flanking sequence: Indices 401540 -- 402039
ATGAGATAGATCTGTCTTTCGGCTTGGGAGAGGCAATGGAATTCTGAGACACAATAACCTTGTTT
ACATACAGTGAAAGAAGGTGAAGGAAAGAAAAGCAAAGAGACCGAGGTTACAGTGAAAGAAAGGA
GAAGATCGAAGAAAGAGAAGCTCATTCACCTTCGACTGAACTCCGGAACCTGAACCTGAACCAGA
TTGAACTACTGAACCGATATTCCCTGAAAAAGAAAGGAAAGACGAAAGAGAAAACCTGAACCTGC
ACCTTCTCTCACTCCTGAACCTTATGAATCAAGGAAAGACGAAAGATTAATGAGACTGAACTACT
GAACCTATCCGAGTTTAGTTTACCGTTCAAGAAAGAAGGGCAAGATGAATGAGACGGACCAGGAA
GTCAAGACGGGATAGGAAAGACTATCGATTCTTGATCCTGACCCTATTTATTCTTTGTAAAGCAG
CGTCTTCATTGATTCTAGAACTGTAAAAGAAGATGAGAGTCAGTC
Found at i:406747 original size:24 final size:24
Alignment explanation
Indices: 406720--406767 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
406710 GGCTCTAACT
406720 CTAAACTGCTTGCTTGGTTGGTTC
1 CTAAACTGCTTGCTTGGTTGGTTC
406744 CTAAACTGCTTGCTTGGTTGGTTC
1 CTAAACTGCTTGCTTGGTTGGTTC
406768 TTTACTCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.21, G:0.25, T:0.42
Consensus pattern (24 bp):
CTAAACTGCTTGCTTGGTTGGTTC
Left flanking sequence: Indices 406220 -- 406719
TTTTCCTATAGATATTACCTGACCTTACCCTTATCTTTCTTGAACTGATCTTTCTCCTTTCTTGT
CCCTATTTATTATTCTAACACTGGTAAACTAATGAACGACTGAAGAACTGAACTCTGGCTGGCTC
CTTCATTCCCCTGAACCGACTATACTTCCCTTCTGTTACTGTTTGTTATCAAAGTCAATAAGGTC
ATCAAGGATATTCAATTAATTGACTCTATCTCTCTCTGATTGATTGAACTGTAGTAAACGAGGCT
GGCTGGCTGAACTGCTTTTCTTTCTTTACCTCTTTTGGTAATTATGGAATTAGGTGTTTAACTCA
GCTTCTTTCACTACTCTTGAATTAAGGAGGAAGTCAAGCCGAACCATTCTTTATCTTTCACGGGA
ACCTTTACTGTCGCGAGTTGCTTTGCTGCTGCACCCGATTTCTTCTTTCACTCTGTAAACTCAAT
AACTAAATAAAATAACCTAAACTGCGCTTCCCTTCGGCTCTAACT
Right flanking sequence: Indices 406768 -- 407267
TTTACTCTTCCTTCCTTAAATAAAAGGGTTCCTTCGCCTTCTTTTCTTGACTATACTACTCCGGT
CAGTTCTCTTGTTAATTTATTCGACTGTAAAGACTATAAAGGAAAACTTGAGTATCAGCTCCTTA
ACTCCTGAACCTATGTCTAATAATTGTTGAATTGACTCTCTTGTAAACTCATTCACCTATCGGTT
GAACAATTCCATTGCCTGAACCTCCCCTGTCGATAAAGCAGCTTCGCTCCCTCACCTCTACAACT
CGGTTGAACAATTTCATTGCCTTACCCTCGGGCTCCTCTTTCTTTATTCTTGAACTGCTACTCTG
CTCTTGATCCTTTCAAAGACTCTTTTCCTCTGCCTGAACTGTAACCTAAAGAGGAAAGATGAATT
CGACTCAACATTAATTGTCTTCTCCTTCAGTTCTTGTTCGAGGCTGAACTTATCTTCTTACGTCA
TTCCCAAGGTAAAAGCCAAAGAGAAATACTCCTTCCTGCCTGCCT
Found at i:407665 original size:28 final size:28
Alignment explanation
Indices: 407623--407687 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
407613 CAGCTTGACA
*
407623 GGAGAGGAACGAAGTGCGAGACCGTAAG
1 GGAGAGGAACGAAGTGCGAGACCGGAAG
*
407651 GTAGAGGAACGAAGTGCGAGACCGGAAG
1 GGAGAGGAACGAAGTGCGAGACCGGAAG
407679 GGAGAGGAA
1 GGAGAGGAA
407688 AGACTGCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.37, C:0.12, G:0.45, T:0.06
Consensus pattern (28 bp):
GGAGAGGAACGAAGTGCGAGACCGGAAG
Left flanking sequence: Indices 407123 -- 407622
TGCCTGAACTGTAACCTAAAGAGGAAAGATGAATTCGACTCAACATTAATTGTCTTCTCCTTCAG
TTCTTGTTCGAGGCTGAACTTATCTTCTTACGTCATTCCCAAGGTAAAAGCCAAAGAGAAATACT
CCTTCCTGCCTGCCTGCCTGTAAGAAAGATGAATTCGACTCAACTCCTTCCTTATTCGTTAGACC
GAACTACTGAACCTATGGATTCTTTGTCCTTCCCCTGATTTCAGCTATTTCTTCTTTCAGAGTAA
ACTCATTAACCTTCTTGCTTGAACTCGGTAAAGCTTACGGTCTCGTTGCTGCGCTCCTCTTTCTT
TATTCAAGGACAAGGTAAATAGGGGGAGGGATGATTAGCTCCTGACCCTGAACCTATCCTTTCTG
GTCTCTCATCTGTTCTTTCCTGAACCTTCTGTAACTGTAAGAAAAGAAGAAGAAGGATGAATGAT
CTTTGACAGTGTTTGTGAATAAATTCAGGAGTTAGCAGCTTGACA
Right flanking sequence: Indices 407688 -- 408187
AGACTGCTTATGACTGAGACTGAACCTATGGATTCTTTCGCCTTCCCTTATTCTCTTTTCTTGCT
TGAACTCTTTCCCTGGCTGGGTAAAGCATATTCTTTCTCCTAACTGACCTCAATCCGCTATTCTC
GTCGTGTTCTTCCTTTTCTCCTATTTATTCTGGAACTGGAAACAAGGTTATACATAATGTCTAAT
GTGTGTCTGGCAGCTTCGCTCCTGTCTTTCTTAGGCGAGCTAGCTTTGCTTTGTTTTATTCTCTT
TTTTCACTGTAACCTCATTCACCTTCTTGCTTTCACTCAGTCTTGACCAAGGTAAAAGAGAAAGA
CTCCTTATTCATTCTCTTCTCCTTTTCTTTGACTCTATTTTCCCTTCAGTTCTTGTTCGAGGTAA
AGAAGTAGCTCTTTGATTGACCGCGAGGTAATGAGGCTGGCTAGTCAGTCTTCACTCCTCTCCCT
CTTGGTCGAGCAGCCGAAGCTCGTTCGCCTCGTAAACTCGGTCTC
Found at i:427931 original size:24 final size:25
Alignment explanation
Indices: 427903--427949 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
427893 ATATATAAGT
*
427903 GTAGGGAGTTGGAAG-TGTAAGTAG
1 GTAGGGAGTAGGAAGTTGTAAGTAG
*
427927 GTAGGGAGTAGGTAGTTGTAAGT
1 GTAGGGAGTAGGAAGTTGTAAGT
427950 GAAAGTAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.28, C:0.00, G:0.45, T:0.28
Consensus pattern (25 bp):
GTAGGGAGTAGGAAGTTGTAAGTAG
Left flanking sequence: Indices 427403 -- 427902
AAAAGAAGGAATGAATAAGGATCAAGAGAATAGACAGAATAAATAGGTTCAGGTGAATGAAGGAG
TTTCCCGAGTCTTTGAATAGTTCAACCCTCGTTCAAGAGTGAAAGAAGTAGGATCAGTCTAATCA
GTCTTCTCTTGCTTCATCAGTCTTTCCTTCCGGTTCAGTAGCCCAGGCAATAGAGGTTCAGTAGC
TCTTTGTCGGTTTCTTCTTCTTTGAATGAATTTACTCGACTAGAAAGGTTCTATCTCTTTTCTTT
CCGTTGGTTGAGTCTTGAAAGACTATAGGTTCCTTCCTCTTATGCAGTTACTTTTCCTATTTATT
CAAAGACTGTAAAGGAGCTTGAGGTTGAGTCTGACAGTTTACTCTCATTCATCAATATTTAGTCT
TTTTTCAATCAAGAAATAGAGTGTCCGGGAAGAGAAAGAATGTTTTATATCCTTCTGGGAAGGGG
TTCTTTACATTGAGTAGCTCGGGGAATATCGGTTAATATATAAGT
Right flanking sequence: Indices 427950 -- 428449
GAAAGTAGATATGGAGTAGGAAGTGAAAGTATGGAGTTGTAAGTCTTTGAAGGTGAAGGTGAAGT
AGCTAGCTAGCTTGATCTTTCGTCTTTACTTGTTCAAGCAAGAAGAGAAGTGCGTTCAGTAGTTA
TTGATCATGTAGGCTGACGAATCGTAAAGGGAAGAAGCAGCTTTACACCTCCCTCCTGAAATCAG
TAGTCTTATATCGAATCCGTTCTTTCTTTAGTCTAAGGAAGTAGTTTCGGATTGACTTGTTCAAG
AAGAGTTGTACTGGTTACGGAGAGAAGCGGTAAGACTACTAGCCTCTTTCAGTCTTGACTTTCTC
TTTCATTTGCTGAGTCTTGGCTTGAAACACTTGCTTGATGAATAAGGTAAATCAGGGAAGTAGTG
ATTGAGTGAAGTAGAATGAATCTTTCGGCTTGACTTTCTTCAACACTTCCTCCCCTCAATGTAAA
GGTAAAGAAAGCATAGGATAGGGCAAGGAGAATGAATCTTACCGA
Found at i:427944 original size:31 final size:31
Alignment explanation
Indices: 427903--427969 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
427893 ATATATAAGT
* *
427903 GTAGGGAGTTGGAAGTGTAAGTAGGTAGGGA
1 GTAGGGAGTTGGAAGTGAAAGTAGATAGGGA
* * *
427934 GTAGGTAGTTGTAAGTGAAAGTAGATATGGA
1 GTAGGGAGTTGGAAGTGAAAGTAGATAGGGA
427965 GTAGG
1 GTAGG
427970 AAGTGAAAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.43, T:0.25
Consensus pattern (31 bp):
GTAGGGAGTTGGAAGTGAAAGTAGATAGGGA
Left flanking sequence: Indices 427403 -- 427902
AAAAGAAGGAATGAATAAGGATCAAGAGAATAGACAGAATAAATAGGTTCAGGTGAATGAAGGAG
TTTCCCGAGTCTTTGAATAGTTCAACCCTCGTTCAAGAGTGAAAGAAGTAGGATCAGTCTAATCA
GTCTTCTCTTGCTTCATCAGTCTTTCCTTCCGGTTCAGTAGCCCAGGCAATAGAGGTTCAGTAGC
TCTTTGTCGGTTTCTTCTTCTTTGAATGAATTTACTCGACTAGAAAGGTTCTATCTCTTTTCTTT
CCGTTGGTTGAGTCTTGAAAGACTATAGGTTCCTTCCTCTTATGCAGTTACTTTTCCTATTTATT
CAAAGACTGTAAAGGAGCTTGAGGTTGAGTCTGACAGTTTACTCTCATTCATCAATATTTAGTCT
TTTTTCAATCAAGAAATAGAGTGTCCGGGAAGAGAAAGAATGTTTTATATCCTTCTGGGAAGGGG
TTCTTTACATTGAGTAGCTCGGGGAATATCGGTTAATATATAAGT
Right flanking sequence: Indices 427970 -- 428469
AAGTGAAAGTATGGAGTTGTAAGTCTTTGAAGGTGAAGGTGAAGTAGCTAGCTAGCTTGATCTTT
CGTCTTTACTTGTTCAAGCAAGAAGAGAAGTGCGTTCAGTAGTTATTGATCATGTAGGCTGACGA
ATCGTAAAGGGAAGAAGCAGCTTTACACCTCCCTCCTGAAATCAGTAGTCTTATATCGAATCCGT
TCTTTCTTTAGTCTAAGGAAGTAGTTTCGGATTGACTTGTTCAAGAAGAGTTGTACTGGTTACGG
AGAGAAGCGGTAAGACTACTAGCCTCTTTCAGTCTTGACTTTCTCTTTCATTTGCTGAGTCTTGG
CTTGAAACACTTGCTTGATGAATAAGGTAAATCAGGGAAGTAGTGATTGAGTGAAGTAGAATGAA
TCTTTCGGCTTGACTTTCTTCAACACTTCCTCCCCTCAATGTAAAGGTAAAGAAAGCATAGGATA
GGGCAAGGAGAATGAATCTTACCGACAGTCAAGGTTCAGGAGAGA
Found at i:427993 original size:20 final size:23
Alignment explanation
Indices: 427940--427993 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 23
427930 GGGAGTAGGT
427940 AGTTGTAAGTGAAAGTAGATATGG
1 AGTTGTAAGTGAAAG-AGATATGG
* *
427964 AGTAGGAAGTG-AA-AG-TATGG
1 AGTTGTAAGTGAAAGAGATATGG
427984 AGTTGTAAGT
1 AGTTGTAAGT
427994 CTTTGAAGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 13 0.50
21 2 0.08
23 2 0.08
24 9 0.35
ACGTcount: A:0.37, C:0.00, G:0.35, T:0.28
Consensus pattern (23 bp):
AGTTGTAAGTGAAAGAGATATGG
Left flanking sequence: Indices 427440 -- 427939
AATAAATAGGTTCAGGTGAATGAAGGAGTTTCCCGAGTCTTTGAATAGTTCAACCCTCGTTCAAG
AGTGAAAGAAGTAGGATCAGTCTAATCAGTCTTCTCTTGCTTCATCAGTCTTTCCTTCCGGTTCA
GTAGCCCAGGCAATAGAGGTTCAGTAGCTCTTTGTCGGTTTCTTCTTCTTTGAATGAATTTACTC
GACTAGAAAGGTTCTATCTCTTTTCTTTCCGTTGGTTGAGTCTTGAAAGACTATAGGTTCCTTCC
TCTTATGCAGTTACTTTTCCTATTTATTCAAAGACTGTAAAGGAGCTTGAGGTTGAGTCTGACAG
TTTACTCTCATTCATCAATATTTAGTCTTTTTTCAATCAAGAAATAGAGTGTCCGGGAAGAGAAA
GAATGTTTTATATCCTTCTGGGAAGGGGTTCTTTACATTGAGTAGCTCGGGGAATATCGGTTAAT
ATATAAGTGTAGGGAGTTGGAAGTGTAAGTAGGTAGGGAGTAGGT
Right flanking sequence: Indices 427994 -- 428493
CTTTGAAGGTGAAGGTGAAGTAGCTAGCTAGCTTGATCTTTCGTCTTTACTTGTTCAAGCAAGAA
GAGAAGTGCGTTCAGTAGTTATTGATCATGTAGGCTGACGAATCGTAAAGGGAAGAAGCAGCTTT
ACACCTCCCTCCTGAAATCAGTAGTCTTATATCGAATCCGTTCTTTCTTTAGTCTAAGGAAGTAG
TTTCGGATTGACTTGTTCAAGAAGAGTTGTACTGGTTACGGAGAGAAGCGGTAAGACTACTAGCC
TCTTTCAGTCTTGACTTTCTCTTTCATTTGCTGAGTCTTGGCTTGAAACACTTGCTTGATGAATA
AGGTAAATCAGGGAAGTAGTGATTGAGTGAAGTAGAATGAATCTTTCGGCTTGACTTTCTTCAAC
ACTTCCTCCCCTCAATGTAAAGGTAAAGAAAGCATAGGATAGGGCAAGGAGAATGAATCTTACCG
ACAGTCAAGGTTCAGGAGAGAAGTGATAGTTTACGAGGTTAAGGC
Found at i:428923 original size:65 final size:64
Alignment explanation
Indices: 428847--429091 Score: 326
Period size: 65 Copynumber: 3.9 Consensus size: 64
428837 AGACCTAAGA
428847 AGGAGCGAAGCTGTGAGACCGAGTTTACGAGGCGAACGAGCGAAGCTGCGAAGACCGAGAGGGAG
1 AGGAGCGAAGCTGTGAGACC-AGTTTACGAGGCGAACGAGCGAAGCTGCGAAGACCGAGAGGGAG
* * *
428912 AGGAGCGAAGCTGTGAGACCGAGTTTACGAGGCGAACAAGCGAAGCTGCGAAGACTG-GAAAGGA
1 AGGAGCGAAGCTGTGAGACC-AGTTTACGAGGCGAACGAGCGAAGCTGCGAAGACCGAG-AGGGA
428976 G
64 G
*
428977 AGGAGCGAAGCTGTGAGACCA----A-GAGGTCGAATGAGCGAAGCTGCGAAGACCGAGAGGGAG
1 AGGAGCGAAGCTGTGAGACCAGTTTACGAGG-CGAACGAGCGAAGCTGCGAAGACCGAGAGGGAG
* *
429037 AGGAGCGAAGCTGTGAGACC-CTTATAATG-GGCGAACGAGCGAAGCTGCGAAGACC
1 AGGAGCGAAGCTGTGAGACCAGTT-T-ACGAGGCGAACGAGCGAAGCTGCGAAGACC
429092 AAGCTGTAGA
Statistics
Matches: 162, Mismatches: 8, Indels: 21
0.85 0.04 0.11
Matches are distributed among these distances:
59 4 0.02
60 48 0.30
61 1 0.01
64 25 0.15
65 83 0.51
66 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.39, T:0.10
Consensus pattern (64 bp):
AGGAGCGAAGCTGTGAGACCAGTTTACGAGGCGAACGAGCGAAGCTGCGAAGACCGAGAGGGAG
Left flanking sequence: Indices 428347 -- 428846
GAAGTAGAATGAATCTTTCGGCTTGACTTTCTTCAACACTTCCTCCCCTCAATGTAAAGGTAAAG
AAAGCATAGGATAGGGCAAGGAGAATGAATCTTACCGACAGTCAAGGTTCAGGAGAGAAGTGATA
GTTTACGAGGTTAAGGCAATTCCATTATGAGAACGATAGATAGGTTCATCGGCGAAGACACTTCG
TCAGGTTCCGGGGCAGGGGTTCTCTTTGGCTTTTACCTTGTTCAATCAGGGAGTCAACTCTCATG
AATAAGGAGTCTTGCCTTACTGGTCCGGTTCAGGTTTCTTCTTCTTTTCTTTGAGAAAGGGAAAC
TCTAACTAACTACTCTAAGCTTTCTTTCCTTTGATTCTAGAACTGTAAACTCGGATAGTCTTTGG
GTTGGTTTCGCTTTCTTCTTCTTTGATAAAGGTAAGGGGTCCGGGGAAGGGAATGGAATTGTAAG
ACCCTGAGGACTTATGTGTATGTTTTGGAATTGTGAGACCTAAGA
Right flanking sequence: Indices 429092 -- 429591
AAGCTGTAGAGGCGAAGGAGCTGATCTTCCTGTTACGGTTTAGGAGAAAGAAGAAATAGGGTCCG
GAGCTTGACCTTCTTCTTGACTGACTGTTCCGGAGAAAGACTAACTACTTACTATGTTACCTCCT
TCAATCAAGGAAAATAGCCTCAAAAGGGAAAGTCTCAATTTAATAAGAACTGGTCTTTACACAAG
TTCAATCAGGTTCCGTCATTCATAAGGTTCGTTCCGGATCAGGTTCTTTCCTTCTTTCTTTGTTC
CTGTTACGGTCAGGGTTTCGTTTCATTCAGTAGTAGCTCCGGGAATATAGGTGAAGGGGAACTCT
CATTCATCCTGAGTAGAGTGTTTACAGTTCAGGGAGAGTGAGTTCAAGCAAGAAAGGAGAAGAGA
AAGAATACTTCAACCCTCCCTTCTTTACTGTTCAGGGAGAGAGAGTAAAAGAAAGGATGAAGCAA
GAGCAGTTCCTCAATAAATAGGTGAAGGAGAAGATCAAGAAGGTG
Found at i:428954 original size:35 final size:35
Alignment explanation
Indices: 428849--428959 Score: 135
Period size: 35 Copynumber: 3.3 Consensus size: 35
428839 ACCTAAGAAG
428849 GAGCGAAGCTGTGAGACCGAGTTTACGAGGCGAAC
1 GAGCGAAGCTGTGAGACCGAGTTTACGAGGCGAAC
* * *
428884 GAGCGAAGCTGCGAAGACCGAG---A-G-GGAG-AG
1 GAGCGAAGCTGTG-AGACCGAGTTTACGAGGCGAAC
428914 GAGCGAAGCTGTGAGACCGAGTTTACGAGGCGAAC
1 GAGCGAAGCTGTGAGACCGAGTTTACGAGGCGAAC
*
428949 AAGCGAAGCTG
1 GAGCGAAGCTG
428960 CGAAGACTGG
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
29 8 0.13
30 13 0.21
31 3 0.05
32 2 0.03
33 2 0.03
34 3 0.05
35 23 0.37
36 8 0.13
ACGTcount: A:0.31, C:0.19, G:0.40, T:0.11
Consensus pattern (35 bp):
GAGCGAAGCTGTGAGACCGAGTTTACGAGGCGAAC
Left flanking sequence: Indices 428349 -- 428848
AGTAGAATGAATCTTTCGGCTTGACTTTCTTCAACACTTCCTCCCCTCAATGTAAAGGTAAAGAA
AGCATAGGATAGGGCAAGGAGAATGAATCTTACCGACAGTCAAGGTTCAGGAGAGAAGTGATAGT
TTACGAGGTTAAGGCAATTCCATTATGAGAACGATAGATAGGTTCATCGGCGAAGACACTTCGTC
AGGTTCCGGGGCAGGGGTTCTCTTTGGCTTTTACCTTGTTCAATCAGGGAGTCAACTCTCATGAA
TAAGGAGTCTTGCCTTACTGGTCCGGTTCAGGTTTCTTCTTCTTTTCTTTGAGAAAGGGAAACTC
TAACTAACTACTCTAAGCTTTCTTTCCTTTGATTCTAGAACTGTAAACTCGGATAGTCTTTGGGT
TGGTTTCGCTTTCTTCTTCTTTGATAAAGGTAAGGGGTCCGGGGAAGGGAATGGAATTGTAAGAC
CCTGAGGACTTATGTGTATGTTTTGGAATTGTGAGACCTAAGAAG
Right flanking sequence: Indices 428960 -- 429459
CGAAGACTGGAAAGGAGAGGAGCGAAGCTGTGAGACCAAGAGGTCGAATGAGCGAAGCTGCGAAG
ACCGAGAGGGAGAGGAGCGAAGCTGTGAGACCCTTATAATGGGCGAACGAGCGAAGCTGCGAAGA
CCAAGCTGTAGAGGCGAAGGAGCTGATCTTCCTGTTACGGTTTAGGAGAAAGAAGAAATAGGGTC
CGGAGCTTGACCTTCTTCTTGACTGACTGTTCCGGAGAAAGACTAACTACTTACTATGTTACCTC
CTTCAATCAAGGAAAATAGCCTCAAAAGGGAAAGTCTCAATTTAATAAGAACTGGTCTTTACACA
AGTTCAATCAGGTTCCGTCATTCATAAGGTTCGTTCCGGATCAGGTTCTTTCCTTCTTTCTTTGT
TCCTGTTACGGTCAGGGTTTCGTTTCATTCAGTAGTAGCTCCGGGAATATAGGTGAAGGGGAACT
CTCATTCATCCTGAGTAGAGTGTTTACAGTTCAGGGAGAGTGAGT
Found at i:443631 original size:12 final size:12
Alignment explanation
Indices: 443614--443639 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
443604 TCATATCTTG
443614 TTGAGTTGAGTC
1 TTGAGTTGAGTC
443626 TTGAGTTGAGTC
1 TTGAGTTGAGTC
443638 TT
1 TT
443640 TGTTTACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.31, T:0.46
Consensus pattern (12 bp):
TTGAGTTGAGTC
Left flanking sequence: Indices 443114 -- 443613
AATCGCGGGGAACCCCAGGGCCGGCTGCTGCCCCTGACCTAATAAGAACCATTATCCTTATGACC
AAACAAGGACCAGCTTACTTACTTCTCGAGCGAGAGTTCCACGATCCCGACCAGAAACTTGTTGG
CAGTAGGGGCATCCAAACTTGCCCAACAAACACCTATTTACAAGGGGCTTGGAGATCGAGGGGTT
TCTGGGGGAGATACAGACAGTAGAATAAGGTTGGATTTGAAAAAGAAAATAGGACTAGATAACAC
ATGTTATGAAACTTGTTCGTTAAGAATTTTGTTGATCTCGTTAGACCTAAACTAATATAGACGCA
GAAAGGGACAGATAGTGCTTCGGAAAAATGGGGGGTTCGTATGATGACCTGGGAGAGGAAAGAAG
GAAGCTGCTTTACCGAGGTGAATGAGATCAGCAGCGAGACCGAGTGAAAGAACACTGACTTAGTG
CTTGCTTTACCGAGTGAAAGAAGGTTATTGATAACTCATATCTTG
Right flanking sequence: Indices 443640 -- 444139
TGTTTACTGTGAAAGAAGAAATAGGTGACGGTTCAGGAAAGAACAGAAAAGAGACCGTCAAATAG
TTCAACCCTTGTGAAAGAATCATCCTCCATCCAGCCAGTTTACCTCATTCAATCAGTCAAAGGTT
CAGGAGTTTACCTCGGTTACAGTCTTCTAAAGAAAGAAGGGACAGGTGAAGGAGAAGGAATAAGG
AGGAATGACTTTCTTACAGCAGGAGAGTAAGTTCAAGAAAGGCTAAGACAGAGAGGAGCGAAGCA
ATGAAACCGACAGGTGAAGGAGCTTGACCGGATTCTCATCCTGCCTAGTAAATTACCTCCTCAAT
GACCTCTTTATTTAATAGGGAGCCATCAGTTTACCTAGTTACATCAGGCAAAGCAAAGGTTTAAG
GTAGAGTATTGATCTTTGACAGTGAAGGGCGAGTAAAAGAAAGAATACATAGGTGAAGGAAGAAG
CCGCATTCTCTTCCATTTCATCCTTCATGCCTTGTCTGTCTTGTT
Found at i:452992 original size:69 final size:69
Alignment explanation
Indices: 452820--453017 Score: 220
Period size: 69 Copynumber: 2.9 Consensus size: 69
452810 TCGATTTGAT
** * * *
452820 CCCCAAAAATACGGGAAAGATAGAATTTCTTAACTTGAAGC-CGAAGCTATTAAGGGAAAAAGTG
1 CCCCAAAAATACGGGAAAGATAGAATTTCTTTTCTTTAAGCTC-CAGCTATTAAGGGAAAAAGAG
*
452884 CAATA
65 AAATA
* ***** * *
452889 CCCCTAAAATACGGGAAAGATAGAAAAGAATTTCTTTCAGCTCCCGCTATTAAGGGAAAAAGAGA
1 CCCCAAAAATACGGGAAAGATAGAATTTCTTTTCTTTAAGCTCCAGCTATTAAGGGAAAAAGAGA
452954 AATA
66 AATA
** *
452958 CCCCAAAAATACGGGAAAGATAGAATTTCTTTTCTTTTTGCTCCAGCTATT-AGTGAAAAA
1 CCCCAAAAATACGGGAAAGATAGAATTTCTTTTCTTTAAGCTCCAGCTATTAAGGGAAAAA
453018 CCTCTTACGA
Statistics
Matches: 104, Mismatches: 24, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
68 8 0.08
69 95 0.91
70 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (69 bp):
CCCCAAAAATACGGGAAAGATAGAATTTCTTTTCTTTAAGCTCCAGCTATTAAGGGAAAAAGAGA
AATA
Left flanking sequence: Indices 452320 -- 452819
ATTGATTCTCGAACTGTAAACTCTCTTTCCTCTTTCCTTGAGTCTCTCGGATTGAATGAATAAGC
TAAATAGGTTACGGTCAGGGAATAGAGGGGAAGTAGTTCAGGAGAATCCGCTTCTCTTTCTTGAC
TTTCTCTTTTACCCCGACTGTAAATGAACAAGAACTGAAGGTCATAGAGGGGAAGTAGTTCAGGA
GAATGCGCTTCTCTTTCTTGACTTGACTTTGTTGAGTCTTTCAAGCGAGTTAAAGAATCCATAGG
AAAAGGGGCGGGGCCACGAGACCGAGTTCAATCAGCCGGAGGGTTACGATCATTTGTATAGGGAA
GCAGCTTTACCCACTGGTTCAGTCTCATGAATCTTGAGGATTGACTGAGAGTGAACGAGAAAGAA
TGTTGAGGAGAAGATCAAGATCAAGAAGGAATCTTGAGTCTTTCCTTACAGTTAAGTCGAATTGA
TTCTTCGATAGGATTGACTTATTAATTACCTTTACTCGATTTGAT
Right flanking sequence: Indices 453018 -- 453517
CCTCTTACGAACTTTGACCCCTATATAGGATACAAAAGATTTTCTTTCAGCGGCTTGACTTTCAA
CACTTTCAGGTTCAGTAGTTCACGATCGTTAATCTTGAGGATTGACTGACAGTTAACTCTCATGT
TGAGTTTCGTTTCGTCTTTCCTTCCTGTTCAGGATAACTCATAAAAGGAGTATTTCACTTTGACA
GTTCAGGCAGAGTACATTAGCTGCTTTACCTCCTGAAAGAAGAATCCTCCAGCCCATTTACCGAG
TGAGTTCAAGAATGAATAAGGAAGGAGTATTGATCTTTGACAGTTCAATCAATCAGGGAGAGAGA
GGAAAGTAAGTAAATGAATTAGCAGCTTTTACAGCGAAAGAATAGGAAAGAAGAAGAAGAAGAGA
ATGAAAGAGAAGCGACTGAACCGATATTCCCTGAGCTACTTCCTTCACCAATATTACCTGACCTA
CACCTTTGACTCTATTATCTGATTGAACTGTAAACAAAGAAGAAA
Found at i:455551 original size:17 final size:16
Alignment explanation
Indices: 455529--455567 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
455519 CGTGGAAACG
455529 CTCTTTAATGGAACTTT
1 CTCTTT-ATGGAACTTT
455546 CTCTTT-TGGAACTTT
1 CTCTTTATGGAACTTT
*
455561 ATCTTTA
1 CTCTTTA
455568 GCTGGTCGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 14 0.70
17 6 0.30
ACGTcount: A:0.21, C:0.18, G:0.10, T:0.51
Consensus pattern (16 bp):
CTCTTTATGGAACTTT
Left flanking sequence: Indices 455029 -- 455528
TTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCAGGTGTATTGGGCGCTGCTCC
GCTATGCGCTATTCATGGTGCTGCCGTAGAAAATCCCTTATTTGAAGATGGTGATGGTGCAAATA
CATTCCTTCCGTGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTT
TGGTACCAAATCCTTTGGGGTTTTGAAAGGTTACATTTCTTTCTCTTATTTGTAACAGTAACTGC
TTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGAC
TTCGTTTCTCAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAAT
CTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGCAAGATCAGCCTCATGAAAACA
CACCTTACCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACG
Right flanking sequence: Indices 455568 -- 456067
GCTGGTCGTAACCAAGAAAGAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACG
GTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGTTCTGGGCCGGA
GCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAGCCCATCTATGAACAAAGATCCAT
TTTCCTTCCCCGCCCGCCTAGCTACTACTGACGGTTGGGGCGTAGGCACTGGTGGGTAAGTAAGT
TATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTGAATTTCCTCTGCAGTATTGGGTT
TTGACGGTATTTATCATGCACTTCTGGGACCCGATACCCTTGATCTTTTCCATTCTTCCGTTATG
TGTGGAAAGATAGAAAGCAAATGACTACTTGGGTATTCACTAAATTAGGTATAGGTTGATTCTAG
TATTCAAAGCTCCTGATTTGGGGGGCGTATATGATACCTAGGCTC
Found at i:456373 original size:17 final size:17
Alignment explanation
Indices: 456351--456385 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
456341 TGGTTTTATT
456351 GCTTGTTCTTTTGTCTG
1 GCTTGTTCTTTTGTCTG
456368 GCTTGTTCTTTTGTCTG
1 GCTTGTTCTTTTGTCTG
456385 G
1 G
456386 TTCAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.17, G:0.26, T:0.57
Consensus pattern (17 bp):
GCTTGTTCTTTTGTCTG
Left flanking sequence: Indices 455851 -- 456350
TGTCTGGAGTACTTCACTGAATTTCCTCTGCAGTATTGGGTTTTGACGGTATTTATCATGCACTT
CTGGGACCCGATACCCTTGATCTTTTCCATTCTTCCGTTATGTGTGGAAAGATAGAAAGCAAATG
ACTACTTGGGTATTCACTAAATTAGGTATAGGTTGATTCTAGTATTCAAAGCTCCTGATTTGGGG
GGCGTATATGATACCTAGGCTCCGTGGGGAGGAGATCTAAGATCAATTACCAACTTGAACCTTAG
CCCAAGTGTGATATTTGGGTATTTACTCAAATCTCTGGGGGAGAGAGAAGGATGGATTCTTAGTG
TAGACGATTTGGAAGATATAGTTGGGGGGCATGTATGGTTAGTTAGGTTACATTTGTATACTTGG
TGGAATTTAGCAGATCTTAACTAAACCGTTTGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCT
TACTTGTCTGATAGTTTAGGTGCTTTATCCCGTTTTGGTTTTATT
Right flanking sequence: Indices 456386 -- 456885
TTCAATAATACTGCTTATCCGAGTGAGTGAGTTTTAGGGGCCGACTGGACCCGAAGCTTCTCAAG
CTCAACCAACCGTTTACGTTTCTAGTTAGAGATCTCTTGTAGCTAACGTTGGATCAAAGGACCTA
CTCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGTAGAAGTCATTTTGAGGGGAGAGA
GAGAGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACTAAGGGGTACTAA
TGGTTTGGACTTGAGTAGGCTGAAAAAAGATATACAACCTTGGCAAGACGTTACGCGGAATATAT
GACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGCGTGTAGCTACCGAAATTCATGCAGT
CAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCTATTTG
TAGGTCATTTATGGCATGCAGGAAGGGCTCGGGCAGCTGCCGCAG
Found at i:463232 original size:25 final size:21
Alignment explanation
Indices: 463185--463228 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
463175 AATAAAACAA
463185 AGCTAGAACGAACTAAGACAG
1 AGCTAGAACGAACTAAGACAG
463206 AGCTAGAACGAACTAAGACAG
1 AGCTAGAACGAACTAAGACAG
463227 AG
1 AG
463229 AGAGAGGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.18, G:0.25, T:0.09
Consensus pattern (21 bp):
AGCTAGAACGAACTAAGACAG
Left flanking sequence: Indices 462685 -- 463184
TAATTAATAAAGAGTGGTTACAGTTCCTGAAAGAAGGAGCAAACAGACCGAGTTCAAGAAAAGAG
CTAGAGCTACTTCATATGCTTTCTTTACTTACCGAGGTTACACAGTTCAATCAATACGGTCAAGG
GAATAGGGAGAGAGAGGGGAAGAGAATAGAGAAAGAAGGGGTAGAAGTCATAAATAGGCAGGCCA
GCCAGGCAATGGAATTCTGAGACATAGAATAGAGGAGTGAAATTAGTCTCATTCATAAGGAGGCC
TTACAGTTCCAGAATAAATAGGTGAATGAGCTAATCTTTCTTTTTCAGTTCAATCAGGGGCAGGA
AATGAAATTGTGAAACCGAGTTTACGAGGGGCAGGAGCGAAGCTGTGAAACCGAGTTTACGAGGT
TCAGGGTTGAGGTTCAGTCTGATTTTCTTACTGTTCCTGGTGAAGGAGCGACGAAGCCACTCGAC
GAGAAGAGAGAGGAGAGGGAGGAGTGAAAGAAGGGAATAAAACAA
Right flanking sequence: Indices 463229 -- 463728
AGAGAGGCAATGGAAGGATCAGATCAAGAGAAATAGAGGTGAAGCAGGGCAGGAGTGCAAGAAGG
AAGGAGAGTCAGTTCTATTAGAATAGGTGAATCAGGCAATGGAATTGCTTTACCGAGGTCAGTCA
ATCTGTCTGTCTCATGGGGTTACAGGAGAGTAAACAACTCATTAGCTGCTTGACCTCTGAGTATA
AATGAAAGAAGGGAAAGAAGAGAGAAAGACAAGTAGTCCCTTGGTTACAGTCAAAGAAGGGTCCG
GTTCAGTAGCTCAGGTTCCGGGGAAGGAGTGAAAGCAAGAAGGAATATGCGAGTGAAGGAAGGAT
CGTTAATCTTTCTTACAGGGGAGAGAGTAAAAGAAAGAGTTCCATCTGTCTCACCAGCTTACCTA
GTTTAGTTCATCAACCCTCGCTCGGGAAATGAAAGAAACAATAGGCAGAGGAGCAAAGCAATGAG
ATGAGACGAGAAGAGAGAGGAGAGGAGTTCTTCAGGAGTTGCCCT
Found at i:465780 original size:28 final size:29
Alignment explanation
Indices: 465724--465780 Score: 89
Period size: 28 Copynumber: 1.9 Consensus size: 29
465714 TCTTGTCTTT
465724 ACTTACCTTGTTACCTCCTTGTTCCATCCAG
1 ACTTACCTTGTTA-C-CCTTGTTCCATCCAG
465755 ACTTACCTTGTTA-CCTTGTTCCATCC
1 ACTTACCTTGTTACCCTTGTTCCATCC
465781 CATCCGGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 13 0.50
31 13 0.50
ACGTcount: A:0.16, C:0.35, G:0.09, T:0.40
Consensus pattern (29 bp):
ACTTACCTTGTTACCCTTGTTCCATCCAG
Left flanking sequence: Indices 465224 -- 465723
GGTTCAGCCAGCCAATGGAATTGCTTTACCTCCTTCAATCAGGAAAAGGTTTAAGGAAAAGGATC
GTTCATCTTTCTGACAGGGAATATCGTCAAAGGTGATTGAGCTTCTCTTTCTCTTTTACCTTGTG
TAAAGGTTCAGTAGCTCAGCAATGAGACCGATAGGTTCAGTAGTTCACTCTTTCTTTCATTCTCT
GATTCTTCTTTAATAGAGAGAGGATTGAATGAATTTACTCGACTGTAAAGGGGAAGGAGTAAGTA
GGGCTAGGATCAAGAGAAGAAAAAGACGAAATAGGTTCAGGCAATGAAATTGGGAAACCGAGTTT
ACGAGGTGAGAGGGCGAAGACAGACACTTTACCGCTAGGGAGAGGAGCACAGCTACTCGACGAGA
AGAGGAGGGAAACCCTTGTTTGTTGTAGAGGGGCAGGGGCGAAGCCGTGAAACCGACAGGGGAGG
TGAAGGAGAAGATCAAGAAGAAATAGTCTGTCTTGTCTTGTCTTT
Right flanking sequence: Indices 465781 -- 466280
CATCCGGTTCATGAGTCAGTGGCTCTCCTGTCAAGTCTGTCTTTACCTTTACTTACCTTGTTCAA
TCAGGTTCATGAATGAGTAAGTAGTTCTCCTTCCTGGCAAGTGAGTGAGTAAGGGGTTCTCCTGG
CAAGTCTGTCTTTACTTAACTTGTTGTTCAATCAGGTGAGGTGGGTGAATGAGTAAGTGGTTCTC
CTGGCAAGTCTAATTAATCTGTCTTCCTTCTCTCCCGTACTCTCTTTCTTTCTCTCCCGTAAAAG
ATAAGAATTAGAATAGATAGGTGTAGGTAGGAAGGTGTAGGTAGGAGCGAAGCTGGGAGACACAA
TAAAGGCGAATGAGCGAAGCCTCTCGACCGATAGGGAGAGGGGAGAGGAGTGAAGTAGCTAACTA
AGCTAAGGAGAGAATGCATCGGAGCTAAGCTGTTAGACCAATAGTAATGGGTTGGGTGGGCGAAT
GAAGCCACTTTCCAGTTCACAAGAATGAATTGTTTCATCATATGC
Found at i:466078 original size:14 final size:14
Alignment explanation
Indices: 466059--466086 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
466049 TAGAATAGAT
466059 AGGTGTAGGTAGGA
1 AGGTGTAGGTAGGA
466073 AGGTGTAGGTAGGA
1 AGGTGTAGGTAGGA
466087 GCGAAGCTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.50, T:0.21
Consensus pattern (14 bp):
AGGTGTAGGTAGGA
Left flanking sequence: Indices 465559 -- 466058
AGGGCGAAGACAGACACTTTACCGCTAGGGAGAGGAGCACAGCTACTCGACGAGAAGAGGAGGGA
AACCCTTGTTTGTTGTAGAGGGGCAGGGGCGAAGCCGTGAAACCGACAGGGGAGGTGAAGGAGAA
GATCAAGAAGAAATAGTCTGTCTTGTCTTGTCTTTACTTACCTTGTTACCTCCTTGTTCCATCCA
GACTTACCTTGTTACCTTGTTCCATCCCATCCGGTTCATGAGTCAGTGGCTCTCCTGTCAAGTCT
GTCTTTACCTTTACTTACCTTGTTCAATCAGGTTCATGAATGAGTAAGTAGTTCTCCTTCCTGGC
AAGTGAGTGAGTAAGGGGTTCTCCTGGCAAGTCTGTCTTTACTTAACTTGTTGTTCAATCAGGTG
AGGTGGGTGAATGAGTAAGTGGTTCTCCTGGCAAGTCTAATTAATCTGTCTTCCTTCTCTCCCGT
ACTCTCTTTCTTTCTCTCCCGTAAAAGATAAGAATTAGAATAGAT
Right flanking sequence: Indices 466087 -- 466586
GCGAAGCTGGGAGACACAATAAAGGCGAATGAGCGAAGCCTCTCGACCGATAGGGAGAGGGGAGA
GGAGTGAAGTAGCTAACTAAGCTAAGGAGAGAATGCATCGGAGCTAAGCTGTTAGACCAATAGTA
ATGGGTTGGGTGGGCGAATGAAGCCACTTTCCAGTTCACAAGAATGAATTGTTTCATCATATGCT
TTACCTAGTCTTTGAATCAATTAGTAGGGGAAGGAGTTAAGGAGACTGAATGTTTGTTAGGTTAA
GTAGTTAAGGAGAATGAATCTTTGTTTCGGGAAGTAGTTAAGGAGACAGAATCTTTGTTTCGGCT
TTCCTTCCTGCCTGTTCCGTTCCGTCTCATTCATCCAGAGTTGAGTGTTTACGGTTCGTTCAAGA
ATCATACTCCCTCCCTTCATATGCTTTACCTTCACCTATTGATTCCTCGGGTTGAACTAGGTAAG
CTGGATGAGAGAGACGGATTGAACTCGGGAAGATGAGAAGAAGAA
Found at i:466406 original size:33 final size:33
Alignment explanation
Indices: 466309--466409 Score: 125
Period size: 33 Copynumber: 3.1 Consensus size: 33
466299 CAATTAGTAG
* * * *
466309 GGGAAGGAGTTAAGGAGACTGAATGTTTG-TTA
1 GGGAAGTAGTTAAGGAGACAGAATCTTTGTTTC
*
466341 GGTTAAGTAGTTAAGGAGA-ATGAATCTTTGTTTC
1 GG-GAAGTAGTTAAGGAGACA-GAATCTTTGTTTC
466375 GGGAAGTAGTTAAGGAGACAGAATCTTTGTTTC
1 GGGAAGTAGTTAAGGAGACAGAATCTTTGTTTC
466408 GG
1 GG
466410 CTTTCCTTCC
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
32 2 0.03
33 52 0.88
34 5 0.08
ACGTcount: A:0.30, C:0.06, G:0.33, T:0.32
Consensus pattern (33 bp):
GGGAAGTAGTTAAGGAGACAGAATCTTTGTTTC
Left flanking sequence: Indices 465809 -- 466308
TGTCAAGTCTGTCTTTACCTTTACTTACCTTGTTCAATCAGGTTCATGAATGAGTAAGTAGTTCT
CCTTCCTGGCAAGTGAGTGAGTAAGGGGTTCTCCTGGCAAGTCTGTCTTTACTTAACTTGTTGTT
CAATCAGGTGAGGTGGGTGAATGAGTAAGTGGTTCTCCTGGCAAGTCTAATTAATCTGTCTTCCT
TCTCTCCCGTACTCTCTTTCTTTCTCTCCCGTAAAAGATAAGAATTAGAATAGATAGGTGTAGGT
AGGAAGGTGTAGGTAGGAGCGAAGCTGGGAGACACAATAAAGGCGAATGAGCGAAGCCTCTCGAC
CGATAGGGAGAGGGGAGAGGAGTGAAGTAGCTAACTAAGCTAAGGAGAGAATGCATCGGAGCTAA
GCTGTTAGACCAATAGTAATGGGTTGGGTGGGCGAATGAAGCCACTTTCCAGTTCACAAGAATGA
ATTGTTTCATCATATGCTTTACCTAGTCTTTGAATCAATTAGTAG
Right flanking sequence: Indices 466410 -- 466909
CTTTCCTTCCTGCCTGTTCCGTTCCGTCTCATTCATCCAGAGTTGAGTGTTTACGGTTCGTTCAA
GAATCATACTCCCTCCCTTCATATGCTTTACCTTCACCTATTGATTCCTCGGGTTGAACTAGGTA
AGCTGGATGAGAGAGACGGATTGAACTCGGGAAGATGAGAAGAAGAAGAAACCGACACCCTGAAC
CTTCTTTCACTCGGTAAAGCGTCAAGAAGAACCTTTCGAGTCGAGCTGCTTCATAGTGTTTAGAA
TCAATCCAACTTAAGAGCTCCGTAACCTGACGAAAAGAGGGAGATGAATCAGACTTTACAGGAAG
GAAAGACGAAAGCGAAAACAAAGCAGCTAAGCTCCCTTCTTGAACTCGGGCTATTCTTGAACTCG
GTAATTAGGAAGTCAAGACTAAAGCAAGACAAGATTCATCCATTCTCCTTTACCTTTAGAAAAGA
AAGAGAGGACTGATTAGAGTTTGAGCTCATCGTCTGATTCAGAGT
Found at i:476500 original size:27 final size:27
Alignment explanation
Indices: 476467--476520 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
476457 CTGGAACAAT
476467 TCCCTCTCTCTAATTAAGCTGTATTCC
1 TCCCTCTCTCTAATTAAGCTGTATTCC
476494 TCCCTCTCTCTAATTAAGCTGTATTCC
1 TCCCTCTCTCTAATTAAGCTGTATTCC
476521 CTTCGCTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.33, G:0.07, T:0.41
Consensus pattern (27 bp):
TCCCTCTCTCTAATTAAGCTGTATTCC
Left flanking sequence: Indices 475967 -- 476466
CGCTATACCTCTCCCAACCCACCTTGTTTGTGTACTGGAACTGCTACCACTTCTTTAGAACAGCA
CTAACTTACCGCTCTATACTATAAGATAAGAAAGAAAATCCAATAGCTACATAATCAAACAAACT
GCTATTAATTATACACACCCAAGTAGTGGCTCGCCTAGAGGAAGAAGCCAAGCCGGAGCCTATGC
ACTACCGAAGAATAGACCTGATAGAATCCATCGATTGCATAAGATATGCCAAAACCACTGACTGG
TCTTTACAAACGGAACAGCATAAAGACAAAAAAGAAGTCAAGTAGACTCTGAAGGAAGGAAAAGA
GATAGTTCAACCTGAGCCGATATGACCTTTTACAGTATTCCCTGAGCTACTGAACCGATAGAGAA
AGAAAGAAAGAAGGGAGACGAAAGCAAGACAACAAGATGAATTAGAGGAAGGAAAGCAAGACAAG
GTCAAGCTCCTCTCCTCTTCCTATTCCTATTCTCTCTGGAACAAT
Right flanking sequence: Indices 476521 -- 477020
CTTCGCTTCTTGAACTGTAACCTCTTTCCCCTGTCCGAGCATATTCTCTCTCTCCTGTCCCTGAC
TCTGTAACCCTTTATAAAAGAGTGATCCTTCTGCTCCTCCTATTTCTTCTTTCATTCAATCTTTC
ACTGTAAGGACTGAAAGCGAAAAAGAGCTACTTTCTCCTAAACTTGAACCGTAACCTCTATGACC
CTTGTTTGAAAGAAGGAGTTAGCTGCTTGTCTCAACCTTAAACCCCAACATCTATCTCTATTTCT
CTTTCTCTGATCCTTCCATTGCCTGAACTACTTAACCTGTCCCTATTTCTTCTACCACTATAAAC
AACTGATGAACTGCTGAACCGGATTGAACTACCTGTAAGAGAAGGTCAAGCTCCTGTTCCTATTC
CCTACTCATTCATTAACCTGAATTACCTGAACTTCTGTCACTGTAAACTCATTAACCTGAACGAA
CCTACTGATGACTCATTCACCTTTTCCTGATGGAATGGAACTCAC
Found at i:487258 original size:71 final size:71
Alignment explanation
Indices: 487097--487259 Score: 272
Period size: 71 Copynumber: 2.3 Consensus size: 71
487087 CTTGTCATAG
* *
487097 CTTTTTCCCTTAATAGCTGAAGCTTAAATCAAATAAATTCTATCCAATATAACTGTCAAAGTTCG
1 CTTTTTCCCTTAATAGCAGCAGCTTAAATCAAATAAATTCTATCCAATATAACTGTCAAAGTTCG
487162 TAAGAC
66 TAAGAC
*
487168 CCTTTTCCCTTAATAGCAGCAGCTTAAATCAAATAAATTCTATCCAATATAACTGTCAAAGTTCG
1 CTTTTTCCCTTAATAGCAGCAGCTTAAATCAAATAAATTCTATCCAATATAACTGTCAAAGTTCG
* *
487233 TCAGAG
66 TAAGAC
*
487239 GTTTTTCCCTTAATAGCAGCA
1 CTTTTTCCCTTAATAGCAGCA
487260 TAGGAAAGCT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 85 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (71 bp):
CTTTTTCCCTTAATAGCAGCAGCTTAAATCAAATAAATTCTATCCAATATAACTGTCAAAGTTCG
TAAGAC
Left flanking sequence: Indices 486597 -- 487096
TTTACAGGAAAGAAAAGCAAATCAGACTCAACCGACACCCGACACCCTTTTCCTTTGACAGATTG
AACTAGGTAAACTCAATCACCTGTCGGTTTCACAGCTTCGCTCCTCTCCCTCCCTTCTAAATCAT
AAGGGTAAAGACTGAAGCAAGATTCATTCTTAGAGTTGTTCAAGAATAAACTCATTAGCTGCTTT
GAAAGACGAAACCGACACTCCTGACCCTATTCATTCTTGATCTGAGACTGGAACATAAAGAAATT
CATTCTATCTCTCCCTTATTTTTAGGGATAAAAGAGAGTCAAGGTAATGTTGAAGTCAAGACGAA
AGAAGAAGAAATGAGAGTGAAGACGAAAGACGAAAGAGAAAACCTGAACCGAAACCCTGAGCTAC
TGAGTTTACAGTGAAAGAAAGAAGGGAAAGCCTCTACTCCTACTTCTGGAACTCTGTCGGACCAA
GAATTAATTGATTCTATCCTATATAGGGGTCAAACCTTGTCATAG
Right flanking sequence: Indices 487260 -- 487759
TAGGAAAGCTAAGAAATTCTATCTATCCCGTATTTTAGGGTATCAAATCTAGTAAAGGTAATTCA
CTATTAAGGAAAGACGAAACGAAACTCAACATGAGAGTGAACTGTAAAAGAAAAAGAAAGTAGAA
TTCTCCTGTCCCTTCTTTCTCTCTTTTACGAGGTAAATAGAATAGGTCTTTTCTTTCACGAGGTC
TGTTTGCTCCTTCTTTCAGAACAAAGACTCTACTCAAGATGAATTAGATAGACAGATTTCACTCT
TTCACTGGGTAAATAGGCTGAGGATTGAATTGACTCTCTTGCTTGTAAAGTCAACTCCTTCACCT
GTCGGTTTCACAATTCCATTGCCTGAACCTTTATCAAAGAGAAAGATGAATTCGACTGAACTACT
TCTCTCTCTTCTGTCCTTTACTTGTAGGTCTCAGAATTCCATTGCCGGGACTATTACTTCTTTCA
CTCTGTAATAGGTGTTTGTTTACGAACTGATCTCCTTCACTCAAT
Found at i:487277 original size:71 final size:71
Alignment explanation
Indices: 487099--487282 Score: 206
Period size: 71 Copynumber: 2.6 Consensus size: 71
487089 TGTCATAGCT
* * *** * *
487099 TTTTCCCTTAATAGCTGAAGCTTAAATCAAATAAATTCTATCCAATATAACTGTCAAAGTTCGTA
1 TTTTCCCTTAATAGCAGCAGAGGAAAGCAAAGAAATTCTATCCAATATAACTGTCAAAGTTCGTA
487164 AGACCC
66 AGACCC
*** * * *
487170 TTTTCCCTTAATAGCAGCAGCTTAAATCAAATAAATTCTATCCAATATAACTGTCAAAGTTCGTC
1 TTTTCCCTTAATAGCAGCAGAGGAAAGCAAAGAAATTCTATCCAATATAACTGTCAAAGTTCGTA
***
487235 AGAGGT
66 AGACCC
* *
487241 TTTTCCCTTAATAGCAGCATAGGAAAGCTAAGAAATTCTATC
1 TTTTCCCTTAATAGCAGCAGAGGAAAGCAAAGAAATTCTATC
487283 TATCCCGTAT
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 100 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (71 bp):
TTTTCCCTTAATAGCAGCAGAGGAAAGCAAAGAAATTCTATCCAATATAACTGTCAAAGTTCGTA
AGACCC
Left flanking sequence: Indices 486599 -- 487098
TACAGGAAAGAAAAGCAAATCAGACTCAACCGACACCCGACACCCTTTTCCTTTGACAGATTGAA
CTAGGTAAACTCAATCACCTGTCGGTTTCACAGCTTCGCTCCTCTCCCTCCCTTCTAAATCATAA
GGGTAAAGACTGAAGCAAGATTCATTCTTAGAGTTGTTCAAGAATAAACTCATTAGCTGCTTTGA
AAGACGAAACCGACACTCCTGACCCTATTCATTCTTGATCTGAGACTGGAACATAAAGAAATTCA
TTCTATCTCTCCCTTATTTTTAGGGATAAAAGAGAGTCAAGGTAATGTTGAAGTCAAGACGAAAG
AAGAAGAAATGAGAGTGAAGACGAAAGACGAAAGAGAAAACCTGAACCGAAACCCTGAGCTACTG
AGTTTACAGTGAAAGAAAGAAGGGAAAGCCTCTACTCCTACTTCTGGAACTCTGTCGGACCAAGA
ATTAATTGATTCTATCCTATATAGGGGTCAAACCTTGTCATAGCT
Right flanking sequence: Indices 487283 -- 487782
TATCCCGTATTTTAGGGTATCAAATCTAGTAAAGGTAATTCACTATTAAGGAAAGACGAAACGAA
ACTCAACATGAGAGTGAACTGTAAAAGAAAAAGAAAGTAGAATTCTCCTGTCCCTTCTTTCTCTC
TTTTACGAGGTAAATAGAATAGGTCTTTTCTTTCACGAGGTCTGTTTGCTCCTTCTTTCAGAACA
AAGACTCTACTCAAGATGAATTAGATAGACAGATTTCACTCTTTCACTGGGTAAATAGGCTGAGG
ATTGAATTGACTCTCTTGCTTGTAAAGTCAACTCCTTCACCTGTCGGTTTCACAATTCCATTGCC
TGAACCTTTATCAAAGAGAAAGATGAATTCGACTGAACTACTTCTCTCTCTTCTGTCCTTTACTT
GTAGGTCTCAGAATTCCATTGCCGGGACTATTACTTCTTTCACTCTGTAATAGGTGTTTGTTTAC
GAACTGATCTCCTTCACTCAATCACTTGAAGAACTGTAAACAAAG
Found at i:490147 original size:48 final size:48
Alignment explanation
Indices: 490076--490170 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
490066 AAGATGTTTC
*
490076 CGAATGCTTGTACTCTACTCCTTTTGTTCTATGAATCCCGACTGACTA
1 CGAATGCTTGTACTCTACTCCTTTGGTTCTATGAATCCCGACTGACTA
490124 CGAATGCTTGTACTCTACTCCTTTGGTTCTATGAATCCCGACTGACT
1 CGAATGCTTGTACTCTACTCCTTTGGTTCTATGAATCCCGACTGACT
490171 CCGCTATGCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (48 bp):
CGAATGCTTGTACTCTACTCCTTTGGTTCTATGAATCCCGACTGACTA
Left flanking sequence: Indices 489576 -- 490075
CCCGATTCTTTACAGTCAGACCAGTTTTCTTCATCGTTAGCTAATCAGATGGATTCTCTTCTTAC
TTACTTAGAGAGATGTAAATAGAAATTCTTCTATCAATTTTCCCCTCCCTGATTTTCTTCCGAAC
TTCAGAAGTGCTTCGGTTGGTCTCTCTCTATCAAAGAATTAAGCGCTGGAGACTCGGCTAGCAGA
AGATCATAGATCATACTTCTTTCTCGATTGCTTTTCCCAAAGAATAGAGGTTTTTAAAGTAATAG
CACAGATTTTGTCTTTACCGTGAAGACGGAAGGAAAGAGTACCGCCCAGTTGAACGTCATACCTA
ACTTCTTTCTACGGTGTTGGCCCCTCCCTTGGAAAAGAGAAGGATAAGGGAAGGGACTTGGTCGC
CAATCTAAGACTTTGACCGAAGGAAATAGTCACTTTGGTTAGCAGTGGGCCCATCATAGGTGCAT
GCAATAGGATCGACCTGTGGCCCACCCAGGTGGTTAAGATGTTTC
Right flanking sequence: Indices 490171 -- 490670
CCGCTATGCAATAATAAATCCTCATACATAGGAGTGAAAAGACCAATACAGATAGATAGAAAGCC
AATGCTTTTCTCCTCGGAGCCAACAAAATCTTTCTTTCTTCCCCGTAGCAAAGGTCTAACCTTCT
TTCTTTTCTTCTTTAATTGAGGAAGTTCTTTCTTCTTTTTGTCTCAGATAGGAGGATGATATAAT
ATCTGAATTCATTCTCTTCTTATAATAGGAGTTCTTTACAGGGGGCGGCGTGGTAATCAATCTGC
ACCAAGACCATGACCGCTATAATGCACGTTATCAAGGCCACTTCATTCATTATCATAACTTCTCA
GAAGAATGGAATTTAAAGCTTCTTTTCTTATAGGCTCACCTTGGTTCAATTCACTAAGAGCAAGA
AACTCTCTTTTTTTCTGAAAGACTGATAATTAGGTGGAAAACTTTCATCCTCTTCCTACTAAGCC
AAGTGGCGGCGTCTGCTTACCGTCACATTTGACTTGAACCTTTCT
Done.