Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt10/NC_014050.1/NC_014050/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           982833
Total number of identified SSRs:                 79
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	28
3	35
4	15
5	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	total
AG	-	4	1		5
AT	-	5			5
CT	-	4	4		8
GA	-	4	1	1	6
GT	-	1			1
TA	-		1		1
TC	-	2			2
AAC		1			1
AAG	9	2	1	1	13
ACA	2				2
AGA	2				2
ATA	1				1
CTT	1				1
TAG	1				1
TCT	5				5
TTC	3	3	2		8
TTG	1				1
AAAG	1				1
AACT	1				1
AAGA	1				1
AGAA	1				1
AGTA	1				1
ATTC		1			1
CTTT	1				1
GAAA	2				2
GATA	1				1
GTCT	1				1
TTAC	1				1
TTCT	1				1
TTTC	2				2
AATAG		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	total
AC/GT	-	1			1
AG/CT	-	14	6	1	21
AT/AT	-	5	1		6
AAC/GTT	3	1			4
AAG/CTT	20	5	3	1	29
AAT/ATT	1				1
ACT/AGT	1				1
AAAG/CTTT	9				9
AACT/AGTT	1				1
AAGT/ACTT	2				2
AATG/ATTC		1			1
ACAG/CTGT	1				1
AGAT/ATCT	1				1
AATAG/ATTCT		1			1