Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KT894205
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1829341
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Warning! 14 characters in sequence are not A, C, G, or T
File 2 of 5
Found at i:434152 original size:27 final size:27
Alignment explanation
Indices: 434114--434168 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
434104 TTGCCAGTGC
434114 GAATCTCGTTCGTTCCTTTCTTTCTTT
1 GAATCTCGTTCGTTCCTTTCTTTCTTT
434141 GAATCTCGTTCGTTCCTTTCTTTCTTT
1 GAATCTCGTTCGTTCCTTTCTTTCTTT
434168 G
1 G
434169 TCGGGTCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.07, C:0.25, G:0.13, T:0.55
Consensus pattern (27 bp):
GAATCTCGTTCGTTCCTTTCTTTCTTT
Left flanking sequence: Indices 433614 -- 434113
ATTCTTTTGCTATGACAGAGTCTTCTCGCTCTCGAAAATGAGATTGCTTTCATTCAGGTATAGAT
TGACGGGAGAGAGGAAAGGGGCATTCGATCATGGGCAAGTCGATGCTGTCGATGCAATTCATTAT
ACGAAATTAGTACTTCCGGTTGAGGCAAATAGACAATCAGACTAGACAGCAGCAGCAACTCTAAC
TATTTAGCTTGAAGGCTAGGTGCCGTTATCCGATTTCCGATCTTTCCCCATCTGTACAATAAGCG
ACGGATTCCCTGTAGCTACTTGGGACATAGGATTCGGTTGAGGTTTCCGTAGGGGAATAAAGCTG
GTTGTTCACTTGATCCCCTCTTCCCTGTCTAACCTCTCGTTTTCACTCGAGTCTTTTATCTCCTC
TCCCTCTTCTTTCTTTTTAATAGGAATGGAGGCGAATTGCAAAAGGTCTACCTTCTCCTCTTGCT
TTTTTCTTTCGTTTTTTTTTCATCGGACCCCAGTTTTGCCAGTGC
Right flanking sequence: Indices 434169 -- 434668
TCGGGTCAAGGAGAATCGCTTGGTTGGGTTCTTTGGTTGCTTATTCCACTTCTTTCAGTGGGAGG
ACTTTCATCAGCAGCAGCAAGTGGGCTTAGGAACAGTTCATCGATTGCTGTGTATTCTGTTTTAG
TAGAAGATTCTATTCATGAGGAGCGATTCGCGTTCTTTCAATAGTAGTTATCTCTACCCTTCATC
TGCAAGGAAGAGGAAATCGACTCCCAGAAATTGGTCATCATTCCTGGCCGGCTGATCGAGGTCGA
GTTCCACCCTTATTGAGAATCTATATGGCTTTGTTCGTCTCTATTATTTGATTTTGAAATAGCCA
AAAACTTGAGTTTCAGGTCTGCGAGAGGTCAATGTACTAGGGCTCATGCCCAAATAGGGGCCTTC
TTTGTCTTTTATTGATTTTCTATCTTTTTCATCCTATTCTATTTCCGTTTTCAATTTTCAAATTT
TTCGTTAGATCAAAATCTGATTTCACTTGTGATTGTATTTGATTC
Found at i:442928 original size:16 final size:15
Alignment explanation
Indices: 442907--442936 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
442897 GGGAATCAAT
442907 ACCGCTAGCAAGACAC
1 ACCGCTAGC-AGACAC
442923 ACCGCTAGCAGACA
1 ACCGCTAGCAGACA
442937 ATCAAAGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.37, G:0.20, T:0.07
Consensus pattern (15 bp):
ACCGCTAGCAGACAC
Left flanking sequence: Indices 442407 -- 442906
GCCTTACTTAATTCCCTCTGAAGGAATAGGTTCTGCAGTTAAGTAAAAAGACTGGGCTAAGGAAG
AAGGTGGGCCTGACAGCGCTTGTCCAGTGGGTCCAGGAGGTTCGGTTCAGCCCTATGATGGATGA
CTAGCTTTTAAAGGCGGGATTGATTGTTCAACAACATGCTTGGTATAGTTCCTGGAACAGGTGTG
TAGTACTTTATTCTTATTTCATGCTATCCGTTTTTCTTTGTCTGGTCTCTCCCTTTAACCAATAG
ATCGGGTGCCATTAAGTGGCCCACTCTCTTGAAAGACAGAAGAGGGTTTCAACAACTTGAGATAA
GATTTCCCAATAAACAAAAAAACCAGGCTTTAACGTTAGATACTAAACCGCAGTTGAGTAAAAGA
GAGAGCACTTAAGGGAAGTCAACTCGAAAGTGAAGGGAGACAGGGATATAAGCCCAAGGGCTAGA
ATAGAAAGGGGATGAACGGATTCAGCTTCCGGGTAGGGAATCAAT
Right flanking sequence: Indices 442937 -- 443436
ATCAAAGCCAAGCAGTAAAGCCCTAGCTCATAATCAAATGAGGAACTTCCATCATCAAAAACCAT
AAAATAACCTGGCAATTCCGGGAAAACAAGCTTTCTACCCAAAAGCCTATCTATCTATCGGGCAA
GATAGTGTAGCCGGTGGAGAAGAGAAAGACAGTGGGGCTAATTTCCGTAATGCAAAGAAGAATAT
TTTTCATGATTTAAACCAGAAAGTGTCATTTATCAGTTATACCCGACAAGAGAATGAAAGACTAA
GGTAGCTGCAATACCGTCCTCCTCAAGCTAAACGACAACAGCTATAACAAGAGTTGTTGCAGCAG
ACAGGTGAGTTGGTTATGCAAGGAGATAGACCCTCTCTGAACTCACTATTCCCTTTTCATCGCTT
TCACTGTCTGTTTTCGAGAGCTAGTTCATGATTTATGAAAGTTCATGGAAAGATTAAAACCTCAA
CCGAAACAAGGAAGGGAAAACGGAATCCACTGCAACTCCAAAGCT
Found at i:444105 original size:21 final size:21
Alignment explanation
Indices: 444079--444123 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
444069 TTTGTTCACC
444079 TCTATTGTAGAAAGAGATTGG
1 TCTATTGTAGAAAGAGATTGG
444100 TCTATTGTAGAAAGAGATTGG
1 TCTATTGTAGAAAGAGATTGG
444121 TCT
1 TCT
444124 TCAGCTATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (21 bp):
TCTATTGTAGAAAGAGATTGG
Left flanking sequence: Indices 443579 -- 444078
TGAAACTACGATTAGGAACCTTATTCATAAGTAACTTGAAAGATCATAAATTGTAAAAACCTTTG
AATCGATTAACTTACTCTGCTTTCCGTTGGGGAATGCTGTTCTGTTGGTAAGGCCAAGAAAACTC
CTGGTCAAAGAGGCTATAATTCCTCCAAAACCAGATGAGCCAAATTGCATTTCCTAATAATAGAG
TAAAGTAAGCTCGCTCAAGCTCTTGCATAGATAGAAGATAAAAAGCAAACAGCATAGAATTTACA
GATTTCTAAAAGCATAGTGTAGGAGATGGAAGATTTATGGACTTATGGACAAGGGCTTTATTGGA
AGCAAAGATCGAGGATTGACTGGCTTAATCATGGTGATAAAAACACCAACTTTTTCTACCTCACA
ACTATTCAAGGCAGGCAAGGAAATAAGATTGTCAGACTCAAAGGTGATAACGACCAATGGATAGA
GGATCCAGATGCCCTCGCAAAAGCTACTTTGAATCTTTGTTCACC
Right flanking sequence: Indices 444124 -- 444623
TCAGCTATCAACCACATTGATAAGGTGATCTCGTAGGACAAAAATGAGAAGCTTATGGCACCTGT
CAAAGACGAAGAAGTGAAAGCTGCTGTTTTTTCGATATGGGCTCTCTCAAGTCTCCTGGACCAGA
CGGTTTTCAAGGTCTTTTTTAGCAAAAGTATTGTCATATTGTGTGGGCAAAAGTAGTTGAGATGT
TGAGGGATTTCTTTGCTGGCAAGCTCCATATGAACTCTTTCAAGAAAACCTATATCGTTCTCATC
CCAAAAGTCCCCAACCCAGAGGATGTTAGCCAGTTTCGCCCTATCAGCTTATGTTTTGCTACAAG
ATCATATCAAAAGTGCTTGTCAATCGAATGAAAGACTTCCTGGATGATGTCATTACTCCAAATCA
AAGTGCCTTTTTCCCAAATAGACTGATGAAGGACAACATCTTCATCGCACATGAGGCTTTCCATT
TTTTAAAGATGAAGAGAAAATCTAAAAGTTATGGATTGGGGGTTA
Found at i:444952 original size:22 final size:22
Alignment explanation
Indices: 444924--444965 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
444914 GACTGCCCAT
444924 CAATATCTCATCTGTTCTTTTC
1 CAATATCTCATCTGTTCTTTTC
444946 CAATATCTCATCTGTTCTTT
1 CAATATCTCATCTGTTCTTT
444966 GCCGATGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.26, G:0.05, T:0.50
Consensus pattern (22 bp):
CAATATCTCATCTGTTCTTTTC
Left flanking sequence: Indices 444424 -- 444923
CTATCAGCTTATGTTTTGCTACAAGATCATATCAAAAGTGCTTGTCAATCGAATGAAAGACTTCC
TGGATGATGTCATTACTCCAAATCAAAGTGCCTTTTTCCCAAATAGACTGATGAAGGACAACATC
TTCATCGCACATGAGGCTTTCCATTTTTTAAAGATGAAGAGAAAATCTAAAAGTTATGGATTGGG
GGTTAAACTGGATATGAACAAAGCCCATGATCGAATTGAATGGGACTTTCTTGAATAAAGTATGA
GGAGGATGGCTTTCTGTGAAGAATGGATTTCTCTTATCATGCAATGTGTGAGGTCTGTCTCTTTC
TCCATCCTTATTAATGGAAGTCCTTCTTCATCTTTCCTTCCTCAAAGAGGTTTGATACAAGGTTT
TGCAGAGCCTTATCTCTTCCTTTTTTGTGCTGATGTTCTTTCGTCAATGGTGTTGAAAGCAGTTG
ATCAGGGGAGTCTAACGGGGCTTAAATTGGGACGAGACTGCCCAT
Right flanking sequence: Indices 444966 -- 445465
GCCGATGATTCTCTATTTATCATAAAAGGTACCTCTCAAAACTGTCCAAAACTCAAAGAAATCCT
TGATGATTATTGTCTTGCTTCGGGGCAAAGCATTAATTTTGACAAGTCATGTATTCTGTTTAGCA
AAAATACACTTGATTCTGTTATGAGCGAGTTGGGGAATATTCTTTGCATTTCAAAAGAGGGTGGT
AATCCTGGAAACTATTTTTGGCTTCCCTCAATTTGGGGCAGATCAAAGAAAGAAGTTTTGACTTA
TGTGCGTGATAGAGTTTTGAAGAAAATCCAAGGGTGTAAAGAATCTCTCCTTTATACTGCAGGGT
AGGAGGTCCTTATCAAGGCGGTGGCTTTATCTCTTCCTACTTTTTCTATGAGTTGTTTCCTTCTT
TCTTCCCATCAAATTATGTGATGAAATTAATGCTGCTATCTCTAATTTTTGGTGGGGTGAGAACG
AGGATGGCGGCAATAAAATCCATTGGATCAATTGGCAAAAGGTTT
Found at i:454967 original size:18 final size:18
Alignment explanation
Indices: 454944--454980 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
454934 TTGGAGACAG
454944 ATTCTCTTTCTGCTATTC
1 ATTCTCTTTCTGCTATTC
454962 ATTCTCTTTCTGCTATTC
1 ATTCTCTTTCTGCTATTC
454980 A
1 A
454981 AACGATCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.14, C:0.27, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTCTCTTTCTGCTATTC
Left flanking sequence: Indices 454444 -- 454943
GGGCGATTTCTTCACTTTTGATTTGCACTCTTGGATACTACAAAACAGTTGCTGCAAGGAGTCTA
TCTTAGGGTAGGGATACCATGGAGTTTTATCTTCATGTTTGCTTTATGGTTCATATGGTACTGGC
GAAACTCTTTATTATTTGATTATAACTTTGTTTGGCCTTCTAATAGCAGTCAATTAATTCTCACT
CGTGCAAAGGAAGCTTTAGATGTCATCTCCATCTCCAATTGCCGTATGAAAGACCAAGTCTTGGT
TGGTTGGAATTCACCGAAAGCTACCTTTGTGAAGGTTAATGTGGATGGTAGTGCGCATGGAAATC
CTGGAGAGTCAACAGCAGGCAGGGGGTGTGATTCGAAATGACAATGGATGCTGGTTAGTTGGTTT
TGCCTATCGGGTTGGTTACTCTTCAGTTTTGATAGCAGAATTGTGGGGAATATATCATGGCTTCC
TTCTTTGCTGGAACAGGGGTTTTAAGGATGTGATATTGGAGACAG
Right flanking sequence: Indices 454981 -- 455480
AACGATCAATAATTTTGAAGCAACTAGTCCTCACAATAATCTACTTGCTGAAATCAAGGAACTGC
TCGGAAGGCCTTGGCGATGCTCTATTCATCATATTTATCGTGAAGCAAAGATGTGTGCAGACTGG
ATGGCTAGTAATTTCCACAACTTGAACCTGGGATTGCACATCTTCGATGCTCTGCCTCAAGGACT
TTCTCCTCTACTTACAGCGGATGTCATGGAAGTAGCTTTTCCTAGTTCACTTCTTCTTTATCTAT
AATTTTATTGTTTTTATCCATCATATATAAAAATAAAATTGTTTGAATCGGAGGCTTTCGATTTC
TATATCAAAAATATACTTACGAAGTTGTTCCAACTTATTGATTTCCTTTAACTAACCCTAGATAC
TTGCCCCTGAAAAATGGATGTTTCTCTTCGAGTACCAATCCTAAGAAATCATTAAAAATCAAAGG
CAAGAATCACATTTTCTACAATACTTGACTCTTAGAAAGAAGAGA
Found at i:455882 original size:18 final size:18
Alignment explanation
Indices: 455859--455895 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
455849 TGGGTGAGTT
455859 TAAAGAAGTATTGTTTAG
1 TAAAGAAGTATTGTTTAG
455877 TAAAGAAGTATTGTTTAG
1 TAAAGAAGTATTGTTTAG
455895 T
1 T
455896 CTGCCTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.41
Consensus pattern (18 bp):
TAAAGAAGTATTGTTTAG
Left flanking sequence: Indices 455359 -- 455858
AACCCTAGATACTTGCCCCTGAAAAATGGATGTTTCTCTTCGAGTACCAATCCTAAGAAATCATT
AAAAATCAAAGGCAAGAATCACATTTTCTACAATACTTGACTCTTAGAAAGAAGAGAAGGTTGTT
AAAAAAAAAGAGCAATTTCTATTTTGATATCGGTATTCTGATATATAAAAAAAGAGTATGTTCTG
GGACGGAAGGATCCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCACTTGGCCACGC
CCCATTTAGATTTCTATTTGACACTACTAAACACTAATATGGGTATTCCTTGTTGGTTAATTCCA
GTTCCAAATAGCTATGGAATAGATTAGATTCTTGCTAGTATTTTGGCACATCTGGATATAGAATT
AAACCGATTTTATTGATCATTACATATAATTCAATTAAGATATTGTATAAAAGTATGATTTCTTC
TATATCTCTTGTAAGAATTGAAGCCTTTTTTTGATTGGGTGAGTT
Right flanking sequence: Indices 455896 -- 456395
CTGCCTTATTTTCCTTTCTTCATTTTTTTCCTTATATCAAAACATATTAATAACTCAATCAAAAT
TATCTCAAAGAACAAAATTTTGTTATGCTTAATATCCTAAATTCGATCGGTCTCTCTTTTAATTC
TGCCCTTTTTTCACCGAGGGTTTAATTTAAGCAGTGATTAGGTACGAGCAATAGTCTGATTAGGA
TTCTGCTGTAATTGCGCTCTCTATTAAGAAGAGCATCAAAGCATTCGAACTAAAGAGATAGAAAG
AATAGTGTAGTGTTTAGTTCCTTTGTGCCCATAGGACTTGAAAGAGCTTCGGATTCTAGCGATCC
TCAATTCTAAGTCGTAAGTCTTTCGCTTTTCCGAGGGCTCGTTGGTCTTGGTTTCGATTCTAGAC
ATCGAGATTCGAATAGCAGTTGGGAAAGGGGATTGGGGATAGATCGGATTTCGGATAGTGCATTG
CATTTCTAACTTTTCCTTCCTCTATCTCATAGTACGGAGTATAAG
Found at i:464570 original size:22 final size:22
Alignment explanation
Indices: 464545--464588 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
464535 TCCATTCCAA
464545 ATGGAAAGGATAGATTGCAGAC
1 ATGGAAAGGATAGATTGCAGAC
464567 ATGGAAAGGATAGATTGCAGAC
1 ATGGAAAGGATAGATTGCAGAC
464589 GGGATCGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.32, T:0.18
Consensus pattern (22 bp):
ATGGAAAGGATAGATTGCAGAC
Left flanking sequence: Indices 464045 -- 464544
GGGATTTAGCCCTTCAGGAAAAGGTGAAGCGGGCCGTCGAAAAGGCCGTAAAAGAATCTCTCGAA
GAAGGAACAATAAATCCCAATGAATGGGATTGACTTTCTATTCTGAGAGGATCATGTACAACAAC
CTTAACCGCGAAAACCTGAGCCTAGATTGTCAGAAACTGTGGACCCAGAAGAACTACATAAGGTC
TGAGACTCACTTTCTTGAAAAGAGGGAGAAGAGTTAATGTAGGCAGCGACCGTTCAAGAAATAGA
AATGTAGTAGCGGTTGATCGACCAAAATGGTATTATTATCTAAAGTAGCTACGCAGCGTCCGTAA
GCAACCTGTCTCTTCTCGCCAACCAAATGAAATGCAACCATCGCGAAAGGTTCGATAGGTGATGG
TGCACAGGAAAATTGCATGGATGCGGACACATCTGAGTTTGGCCCTTGGATGATTGCTCAACGAC
GTAAACCAAGGAGATTAGTATTAGGGAATAATGGTTCCATTCCAA
Right flanking sequence: Indices 464589 -- 465088
GGGATCGTGGGTCACGATTTAGATTTAATCCCTTAACAGGACTCCCTGAAGAATTAGGATAATAG
GAAATTTGAAGTTCCCGCCTTGAATAAGATGGAGAAGCTGGGGCCTAGGAATAATCTGAAAAACG
GATATGGCCCCTTGATGAGCCCAAGAGAGAAGAACAAGAAAGCTGAGACCAGGTCTGGTCATGTG
AAAGGGCCCATAGCACCTGCATCGAAGGAAAATTCTAAACGGGCAGAAACTCCTGTTGCATCTGT
CGTTCTTCGTGAGAAAGAGTTGGTGATCGAGAAGACAGCCAAGGGTCTTTACAGTTCTGGGAAAG
AAGATGTCGATGTGGTAGGAACTAAGGTGATCGATTTGGCTAGGGAAGAGGAGATGATGGAGGTT
TGTAATAGTCAACATGATGTCTCTCCTTCATCGGACCAGCGTGGATGTAAGCCGCCGGATTCGGT
AACTATGGTGGCTGAGACGCAGTATCAGTTTTTACAGGATCCAAG
Found at i:465322 original size:31 final size:31
Alignment explanation
Indices: 465284--465354 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
465274 AGCAGGCCCT
465284 GGTGTAGGAGAAAATGCTCTACTGAGCTAAC
1 GGTGTAGGAGAAAATGCTCTACTGAGCTAAC
465315 GGTGTAGGAGAAAATGCTCTACTGAGCTAAC
1 GGTGTAGGAGAAAATGCTCTACTGAGCTAAC
*
465346 GGTGGAGGA
1 GGTGTAGGA
465355 AGTGCAGCTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (31 bp):
GGTGTAGGAGAAAATGCTCTACTGAGCTAAC
Left flanking sequence: Indices 464784 -- 465283
AAAGGGCCCATAGCACCTGCATCGAAGGAAAATTCTAAACGGGCAGAAACTCCTGTTGCATCTGT
CGTTCTTCGTGAGAAAGAGTTGGTGATCGAGAAGACAGCCAAGGGTCTTTACAGTTCTGGGAAAG
AAGATGTCGATGTGGTAGGAACTAAGGTGATCGATTTGGCTAGGGAAGAGGAGATGATGGAGGTT
TGTAATAGTCAACATGATGTCTCTCCTTCATCGGACCAGCGTGGATGTAAGCCGCCGGATTCGGT
AACTATGGTGGCTGAGACGCAGTATCAGTTTTTACAGGATCCAAGTTTGGATATGGAGATTGCAG
ATGACACAGCTTTGCCTAGAGAGCTGAACATTATAGGAGACAACAAGTTTGTTAATGGCTGGAGC
CTTGTTTCGGCTATTAAGCTGTAGTAGCTGTTCTCTTTACGATTGAGCTTTCTCTCGCTTTAATT
CAATAGGGCCCGTGTCACTTGACAAGCCCGATCGTAGCAGGCCCT
Right flanking sequence: Indices 465355 -- 465854
AGTGCAGCTGTAAGCCCGGTAGCAAAGCAAGGCAAAGCAGACCCAAAAGATTCAGGAAGTCGAGC
TAGAATATGTTGAAGATATGGAAAAGGAGGGCTGTTTAAGTTGAAGAAAGAGTCCCGCACTAAAG
CACTCGACCCAACCTCGTACGTGGAATAAAGAAGAACATTCCTTGGTCATCCTTAGATGATTTGG
AGCCGGGTATCCCATCGAAGCTAACAATGGTGTTAGGACTCGTTCCTAGAAAAGGAAGTGACCAA
GACTCTATGTTTTTCAGGTTTTTCTGCCGCTTCGAAGAACTTTTTACTGTCCACAACATTCATAT
GCTTTCTTTTTCACAACGTTCATATGCTTTCTTTTTTTTGTTGTTTGGCTACAACGGGTACGCTC
TATAGAGGATTTGCTCGGGTCTGTTCACTTTCACTTGGTCGCCTGCTATCTTTGAAACCTCTTTG
CTTGCAGAGGCAGGAGTGTAAACGTCTGAGAGAGCGCTTCGCGAA
Found at i:465718 original size:29 final size:25
Alignment explanation
Indices: 465666--465715 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
465656 TTTTACTGTC
465666 CACAACATTCATATGCTTTCTTTTT
1 CACAACATTCATATGCTTTCTTTTT
*
465691 CACAACGTTCATATGCTTTCTTTTT
1 CACAACATTCATATGCTTTCTTTTT
465716 TTTGTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.06, T:0.48
Consensus pattern (25 bp):
CACAACATTCATATGCTTTCTTTTT
Left flanking sequence: Indices 465166 -- 465665
GCTGGAGCCTTGTTTCGGCTATTAAGCTGTAGTAGCTGTTCTCTTTACGATTGAGCTTTCTCTCG
CTTTAATTCAATAGGGCCCGTGTCACTTGACAAGCCCGATCGTAGCAGGCCCTGGTGTAGGAGAA
AATGCTCTACTGAGCTAACGGTGTAGGAGAAAATGCTCTACTGAGCTAACGGTGGAGGAAGTGCA
GCTGTAAGCCCGGTAGCAAAGCAAGGCAAAGCAGACCCAAAAGATTCAGGAAGTCGAGCTAGAAT
ATGTTGAAGATATGGAAAAGGAGGGCTGTTTAAGTTGAAGAAAGAGTCCCGCACTAAAGCACTCG
ACCCAACCTCGTACGTGGAATAAAGAAGAACATTCCTTGGTCATCCTTAGATGATTTGGAGCCGG
GTATCCCATCGAAGCTAACAATGGTGTTAGGACTCGTTCCTAGAAAAGGAAGTGACCAAGACTCT
ATGTTTTTCAGGTTTTTCTGCCGCTTCGAAGAACTTTTTACTGTC
Right flanking sequence: Indices 465716 -- 466215
TTTGTTGTTTGGCTACAACGGGTACGCTCTATAGAGGATTTGCTCGGGTCTGTTCACTTTCACTT
GGTCGCCTGCTATCTTTGAAACCTCTTTGCTTGCAGAGGCAGGAGTGTAAACGTCTGAGAGAGCG
CTTCGCGAAAGAATCGTGTGGCGCGGTGAAAGGTTTCCCGTTGGCTCTGAAAGACCTGGTCTTCA
CCTAATTGTGGAAGAGGGTAGGTGCGTAGAGTATCAACTCTCTCTCGCGCCTTTCTTCAGCTTCT
TCCTGTTCGTCTATTCGGGACGGGGCAGGCAGTCCACATACATGAAGAGAAGAAGAGAGGATAGG
GGGTTCCCTGATATTAAGGTGTCAAGGCAGTCGAAGAAGGCCACAAGTGGAAGCAAGCGATGCTT
TGGTCATTCAGTTGACTCCGCCAGTCCGTGCTTGAAAGACATCATCCTCTGAGTCATAATCTTCC
TCGCGTATGTATAAGATCGATTTCTAAAACAGATTACTAATCCTT
Found at i:466228 original size:19 final size:19
Alignment explanation
Indices: 466204--466241 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
466194 CTAAAACAGA
466204 TTACTAATCCTTAACTTTT
1 TTACTAATCCTTAACTTTT
466223 TTACTAATCCTTAACTTTT
1 TTACTAATCCTTAACTTTT
466242 CGAGGAATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.53
Consensus pattern (19 bp):
TTACTAATCCTTAACTTTT
Left flanking sequence: Indices 465704 -- 466203
TGCTTTCTTTTTTTTGTTGTTTGGCTACAACGGGTACGCTCTATAGAGGATTTGCTCGGGTCTGT
TCACTTTCACTTGGTCGCCTGCTATCTTTGAAACCTCTTTGCTTGCAGAGGCAGGAGTGTAAACG
TCTGAGAGAGCGCTTCGCGAAAGAATCGTGTGGCGCGGTGAAAGGTTTCCCGTTGGCTCTGAAAG
ACCTGGTCTTCACCTAATTGTGGAAGAGGGTAGGTGCGTAGAGTATCAACTCTCTCTCGCGCCTT
TCTTCAGCTTCTTCCTGTTCGTCTATTCGGGACGGGGCAGGCAGTCCACATACATGAAGAGAAGA
AGAGAGGATAGGGGGTTCCCTGATATTAAGGTGTCAAGGCAGTCGAAGAAGGCCACAAGTGGAAG
CAAGCGATGCTTTGGTCATTCAGTTGACTCCGCCAGTCCGTGCTTGAAAGACATCATCCTCTGAG
TCATAATCTTCCTCGCGTATGTATAAGATCGATTTCTAAAACAGA
Right flanking sequence: Indices 466242 -- 466741
CGAGGAATCCTTCATCAGTGGTTGTTTTTTTTGTCCAAAACAAAAGGTTATTTTATTGATATCAC
TAAAACCAGAATTACAATCACTAATCACTCTTAGACCTAGACTCAAACGAGAAAGCCTTCAAGGA
ATCTCAGAAACCTAGATCTAAACAGAGATTAGCAAAAGAAAAATCAGCAAGGAGGTGCAGGAAGC
CCATCTTTGTCCAGAATGTTTATTAATGGATTCGGGGGCGGATTAACCCATCCTTACGGGCACTT
TCCCATTTTGGTGTTGACTGCAATCCAGTTGGAAGCTTCATTGGCACTTCTTCTGACCAAGTTGA
CCCTACTCTGCTTGATTCTGGAGAGAATCTCTCGAATATCCATGATCACAGGCTCAACTTCCCAT
CTGTACTTCCTGATAGTGCTTAGGGCTCCATACAACTCTTCAGAATCTATTTCAAAAACAGCATC
ATCAAAACGAAACCTCTCAGAAAAACTAACTGCTTCCTTCAAAGC
Found at i:466250 original size:19 final size:19
Alignment explanation
Indices: 466209--466253 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
466199 ACAGATTACT
** *
466209 AATCCTTAACTTTTTTACT
1 AATCCTTAACTTTTCGACG
*
466228 AATCCTTAACTTTTCGAGG
1 AATCCTTAACTTTTCGACG
466247 AATCCTT
1 AATCCTT
466254 CATCAGTGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (19 bp):
AATCCTTAACTTTTCGACG
Left flanking sequence: Indices 465709 -- 466208
TCTTTTTTTTGTTGTTTGGCTACAACGGGTACGCTCTATAGAGGATTTGCTCGGGTCTGTTCACT
TTCACTTGGTCGCCTGCTATCTTTGAAACCTCTTTGCTTGCAGAGGCAGGAGTGTAAACGTCTGA
GAGAGCGCTTCGCGAAAGAATCGTGTGGCGCGGTGAAAGGTTTCCCGTTGGCTCTGAAAGACCTG
GTCTTCACCTAATTGTGGAAGAGGGTAGGTGCGTAGAGTATCAACTCTCTCTCGCGCCTTTCTTC
AGCTTCTTCCTGTTCGTCTATTCGGGACGGGGCAGGCAGTCCACATACATGAAGAGAAGAAGAGA
GGATAGGGGGTTCCCTGATATTAAGGTGTCAAGGCAGTCGAAGAAGGCCACAAGTGGAAGCAAGC
GATGCTTTGGTCATTCAGTTGACTCCGCCAGTCCGTGCTTGAAAGACATCATCCTCTGAGTCATA
ATCTTCCTCGCGTATGTATAAGATCGATTTCTAAAACAGATTACT
Right flanking sequence: Indices 466254 -- 466753
CATCAGTGGTTGTTTTTTTTGTCCAAAACAAAAGGTTATTTTATTGATATCACTAAAACCAGAAT
TACAATCACTAATCACTCTTAGACCTAGACTCAAACGAGAAAGCCTTCAAGGAATCTCAGAAACC
TAGATCTAAACAGAGATTAGCAAAAGAAAAATCAGCAAGGAGGTGCAGGAAGCCCATCTTTGTCC
AGAATGTTTATTAATGGATTCGGGGGCGGATTAACCCATCCTTACGGGCACTTTCCCATTTTGGT
GTTGACTGCAATCCAGTTGGAAGCTTCATTGGCACTTCTTCTGACCAAGTTGACCCTACTCTGCT
TGATTCTGGAGAGAATCTCTCGAATATCCATGATCACAGGCTCAACTTCCCATCTGTACTTCCTG
ATAGTGCTTAGGGCTCCATACAACTCTTCAGAATCTATTTCAAAAACAGCATCATCAAAACGAAA
CCTCTCAGAAAAACTAACTGCTTCCTTCAAAGCCAATGCCTCTGT
Found at i:470373 original size:20 final size:17
Alignment explanation
Indices: 470327--470377 Score: 102
Period size: 17 Copynumber: 3.0 Consensus size: 17
470317 GGTAGACCAC
470327 AAGGAGTTATTATCTCG
1 AAGGAGTTATTATCTCG
470344 AAGGAGTTATTATCTCG
1 AAGGAGTTATTATCTCG
470361 AAGGAGTTATTATCTCG
1 AAGGAGTTATTATCTCG
470378 TGGAGGAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (17 bp):
AAGGAGTTATTATCTCG
Left flanking sequence: Indices 469827 -- 470326
TAGACCTAAAAGTACATACCTCTACTATCCTCTCCTTCTAGTCGAGCCTCTTACGCCCCTCTGGC
TTCAACTCTTTGTCATACGAGCTAGCAGCTGCTAATAAAGGTACTAGCAACCGGCTCCGCATTTG
TCTTTCTTTCGGTTGCTTTCGGTCTTGATTCCGAGGTTGGGACCTCGTTGGCCTTTTCCCGATCC
AACCACCAAGACGAAGGTAAAAGCGAAGCGTAGCGAAGCGTATCGAAGCGAATAAGATTTTGTAA
GGAGAAGAGGGCGGGAAACTAGTTATTCTCTGTACGAGATTCTTTCTTTGATCATTGGGATTCGG
TCTTCGTTCATAGGGGAGCAGATAGGAAGCGAAGGAAGCGAACAAGTCATGGTGAGACGAATGGC
GTACGAACGACAGTAGCACATCTTACTCATGTAGTTGCTAGAATAGAAGAGGAAATAACTCATTG
AATCGAATGAATTCCATCCAGCGAGTCCTAATGATGGTAGACCAC
Right flanking sequence: Indices 470378 -- 470877
TGGAGGAGGATCAACTAGGAGGCGCTCAATATCCAATGAAAAGATCTCCGCGATGTAGGGAACCA
GCTCAGCACCGAAGAAAAAGTCTCTTTTGAAAAGATAGAAGCACTCCGGAAGAGGGCACCTATAG
CAATGAAAACCTCCCTTGACTCAGTCTTGCTGCATCCTGCGCCAGATCCACAAAAACAAGGAAAT
CTTAGATCCGTTCTCTCAAACCAAGAAGAGGGCGGTCAAGAAGATTATAGAAAATCAGACATAAA
AAAACGTAGAAAGAAAAAGCAATACAAAAGCAAGACGGAAGCAGAGCTGGATTTCGTCCTAAACT
GGTATTTCCGTTTTCAATTGAGATGGGATCATTCTTTAAATCAAAGAATAATCAAAAATATCAAA
GTATATTGTCTCCTGCTTAGGCTGATAAATACAAACGAAATTCCTATATCCTTTATTCAAAGGGT
AGAAATGAATCCGGATATTTTGATGATTCAGAATTAACTCTTAGA
Found at i:472871 original size:18 final size:18
Alignment explanation
Indices: 472848--472883 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
472838 TCGACCCTAC
472848 TTACACCCTTGAATTGGA
1 TTACACCCTTGAATTGGA
472866 TTACACCCTTGAATTGGA
1 TTACACCCTTGAATTGGA
472884 AGTCGTCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (18 bp):
TTACACCCTTGAATTGGA
Left flanking sequence: Indices 472348 -- 472847
TTAAACACAGGGCCTAACAACCCGGGCCTCACTCGACTCCTATTCTATGACCGTCTTTCACTTTG
GAGTTTCGGTGGATTCAGCAGCCTCCTGTTCTTTCGCTTCTTTTGCAGCAACATTCGTTTAACCT
TTTCCTGGCTAGCTGGCACAGGTTTAGTTAACCGGATTTCACGAAAGCAATTAATTAGGGATCTG
ATTACCCAACTGACAAGCCAAAGCTTGTTGTTGGTCTTGATGCGGAGGTTGGTCTTTCCCCTGCG
GATGAAAGAGGAGGACGCAAAGGCGTCCGAAGTACCATGAGGTAGAAGGCACCTAGCGCCATTGG
ACCAGCGAATATCTCATCTGAATGAAGGATAAGAATCGTACTCATGAGCAAGAATGAACCCGAGA
TGATGAAAAAGAATTACAACCAATCAAGGAAGTACTACGCAAGGCTCTGACAAGACCATATCCCC
TTCAATCCAAAAACCGGGATCCCCATTCGGACGGTTCGACCCTAC
Right flanking sequence: Indices 472884 -- 473383
AGTCGTCCTGCCCAGAATGCACTCCTTGAAAGGCTCTCGTCCCTATTCGTTTAATTGCCCAACCC
GCTAAGATCGAAAGAGACCCCTAGTTCTAGCAGCTATCGATGAAAGCCCTATTTACCTCAGGCTG
CCTTACTAACTTAGTTCCGATCGATATGATCCATGGATCACTCACGCGATCTCAACAATCTCTTT
TTTCATCAATATCAATATGGGTCTGCTTGGCATCCCGGTTAGGACAGATTGGGTAGTTCTGGCCG
TATTGAATTCAACCACTTTGAAGCTTCTTCTTTCCTATTATTGATAAAATGAGGAATCCTGCGAA
AGCTTCGACTCAGTCGCAGCTGCACCGAACAATCTTTCTGAAAAGAAGGGTGGTCCCATTATGAC
AGTGAAACGATCAAAAGATGCCGATTAGAAAGGCAGGGCCGAAGCTTTACTAATAAGGTAAGGCT
CATTTAGACCAGCTCCACCAGAGCATTTAAAAAGAGCGCTCGGAA
Found at i:511428 original size:22 final size:22
Alignment explanation
Indices: 511403--511447 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
511393 GAATGTCGGG
511403 AATCGTCTTACTCCCTCCTGAA
1 AATCGTCTTACTCCCTCCTGAA
511425 AATCGTCTTACTCCCTCCTGAA
1 AATCGTCTTACTCCCTCCTGAA
511447 A
1 A
511448 TGGTAGCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.36, G:0.09, T:0.31
Consensus pattern (22 bp):
AATCGTCTTACTCCCTCCTGAA
Left flanking sequence: Indices 510903 -- 511402
GTAAAAGCCGGTTAACGCTGGTCTACGATCGAGTGTCATAGGTGATTACAGTCCCTCGCAATCAA
TACCGAAAGCAAGTTCATATAAGATATTTCTTTCTACCCCTTCTTCTGTAAGAGCAAAAAGCCTT
CTTTTTCTTCAATGAGAAAGCATTCGTTCGTAGTCGCTAAGAGGGTAAGGGGGGGTTACGGGTTT
GGAGGAGGAGATGTCGTTTTATTTTCCAACCAGATGATACTTCCCTTGATGTGTCAAAGCTGATT
GTGAATATTAGAAGGACGGTTGAAGAATCTGAGGAAGCGACGAGTGTCCTTCTTTACTCAGTAGC
GAATAAAAGGTTCGAGAAATATCGTATAGTAAGTAGTGAATCGAATGAATGAAAAAGAGAATCTC
ATAATNACGAAGGGGATGAGACGTAAGGAGAAGCGAAATCTGTTATGCGAATTGCTGACGATCGG
GAATCAGCTTCCGGGAATCGTCTTATCGTCTTACTGAATGTCGGG
Right flanking sequence: Indices 511448 -- 511947
TGGTAGCGCATATCGTCTGCGCATATCGTCTTCATTGCGGAGATCGGCTTCTAGTTGTATTCCTG
CTCCAGGTGATGTGCAGTAAAGAAAGACTCGCGGCTAGAACAACTGTTTAGTTTAACTCATCAAA
TGCTGCTGTTCTATCAATACCTTCGTAAAAGAAGTGAATCCACATATGGAATTTGAATAACCATT
TAGGCGAATGAACGGTGAAAGCGGGTCTTACTTTACCATACCCGGTGAAAACAGCAGACTTGTTA
TACTTTTCGTTAGCGAGTCTTAAAGGCGGGAGAGCGGATACTGGTCCTTAACGAGCTGATACTAA
TAACGTTTTCCCGGGATCATGCAAGGGAATTGGTGTTCCGGGCGATGGCAAAGAAGACGAATTAA
ACAATTAGGGAACTCACCTATATAACACATACACAATTATTGTAGTAGGTAATGCGCTACGAGGA
ACTCCTTCCTTTGCTCTTTACTTTGCTGAATCTCCTTGAGGTACC
Found at i:511471 original size:13 final size:13
Alignment explanation
Indices: 511453--511478 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
511443 TGAAATGGTA
511453 GCGCATATCGTCT
1 GCGCATATCGTCT
511466 GCGCATATCGTCT
1 GCGCATATCGTCT
511479 TCATTGCGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (13 bp):
GCGCATATCGTCT
Left flanking sequence: Indices 510953 -- 511452
GTCCCTCGCAATCAATACCGAAAGCAAGTTCATATAAGATATTTCTTTCTACCCCTTCTTCTGTA
AGAGCAAAAAGCCTTCTTTTTCTTCAATGAGAAAGCATTCGTTCGTAGTCGCTAAGAGGGTAAGG
GGGGGTTACGGGTTTGGAGGAGGAGATGTCGTTTTATTTTCCAACCAGATGATACTTCCCTTGAT
GTGTCAAAGCTGATTGTGAATATTAGAAGGACGGTTGAAGAATCTGAGGAAGCGACGAGTGTCCT
TCTTTACTCAGTAGCGAATAAAAGGTTCGAGAAATATCGTATAGTAAGTAGTGAATCGAATGAAT
GAAAAAGAGAATCTCATAATNACGAAGGGGATGAGACGTAAGGAGAAGCGAAATCTGTTATGCGA
ATTGCTGACGATCGGGAATCAGCTTCCGGGAATCGTCTTATCGTCTTACTGAATGTCGGGAATCG
TCTTACTCCCTCCTGAAAATCGTCTTACTCCCTCCTGAAATGGTA
Right flanking sequence: Indices 511479 -- 511978
TCATTGCGGAGATCGGCTTCTAGTTGTATTCCTGCTCCAGGTGATGTGCAGTAAAGAAAGACTCG
CGGCTAGAACAACTGTTTAGTTTAACTCATCAAATGCTGCTGTTCTATCAATACCTTCGTAAAAG
AAGTGAATCCACATATGGAATTTGAATAACCATTTAGGCGAATGAACGGTGAAAGCGGGTCTTAC
TTTACCATACCCGGTGAAAACAGCAGACTTGTTATACTTTTCGTTAGCGAGTCTTAAAGGCGGGA
GAGCGGATACTGGTCCTTAACGAGCTGATACTAATAACGTTTTCCCGGGATCATGCAAGGGAATT
GGTGTTCCGGGCGATGGCAAAGAAGACGAATTAAACAATTAGGGAACTCACCTATATAACACATA
CACAATTATTGTAGTAGGTAATGCGCTACGAGGAACTCCTTCCTTTGCTCTTTACTTTGCTGAAT
CTCCTTGAGGTACCGGGATTCCTGTTGATGATTTAGGATTGGTGC
Found at i:512969 original size:21 final size:21
Alignment explanation
Indices: 512945--512988 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
512935 AAGGAAGGCC
512945 TATTCAGAGTATAGCTACTCA
1 TATTCAGAGTATAGCTACTCA
512966 TATTCAGAGTATAGCTACTCA
1 TATTCAGAGTATAGCTACTCA
512987 TA
1 TA
512989 AGGTTCGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (21 bp):
TATTCAGAGTATAGCTACTCA
Left flanking sequence: Indices 512445 -- 512944
CTATGAAACCTAACTTCTCTCTTCGCCTAACGTATAAAGCGAATAAGCAAGTAAACCAGAGAAGA
GAGTGAAAGCGAGATAAGGGATGGTGCAAGATATGCCTTCGTAAGCGATCGAGTTGCATAAGTTG
GTCAGAACAAGCAAGCCGCCAACGAGCATCGGGGTGGGACGTAGTATAAGTAGTGGCGAACGGGC
TGCTAAAAAGATTGAAAATGCGAAAGTCCTCGTCCATTAGAAACAGTTAACTCTGCCTTTTCCTT
TGCTATGGGGCTTTCCTCCGTAGGTGCTGTTAAAGAAGCCTGCAAAAGAGGGATTCTCATAGTAA
CAATAGTTACACGTGAAGAGGAATAGTATTGAGTACAAGTCAACTAGCCCCTTTTCATCAGCCTC
AAAGCTTTACGGCTCATAGTCAGACGAGGTTTTTAGTAAGTCGAGCACAAGTGGGCCTTTGATCA
GAAAGGAATCCTTGTTTGTATACGCAGCGAAGAGGAAGGAAGGCC
Right flanking sequence: Indices 512989 -- 513488
AGGTTCGGACTTGGATTGTATGGAATAAACTAGGCTCAGAAAGTGTATAACCCGAGAATACCTAA
AGAAATACGGAAGGGGATGATTTATCATCCAATCTTTAAAGAGGCGGCCCTATAAGGCCTTAAGG
CGAATAGTCCGGGAGCTGAAACGTAAGTCTTTGAGGACGTAGGAAAGGGCGAATAAGTCATGGGC
TCTTCAAGATAGGGCGCTTACTATTGAGTTTTACTCTTGAAGACTCAAAGTTGCAGATTTAGAGT
GACCCGTTAGAGTGGGTTTGACTCTTTCAGTTGGTGTTTACTATGGGGATGAAAACGCTCTTAGT
AAGTCTTTTTGGCTAGGCTCTCCAAGACCTCACCCATATGCGGAAGGGGTACAAAGCACAATCTC
TTCTATCAACTCGCTAGCTAGCAAAGGCACCCCGATTCTATCATCTTGTTGCATCTGCTAGAGAA
GGGGAAAGCTCTGAATCATACTTTTTCTCATGCTAATCAGAATTT
Found at i:517244 original size:16 final size:16
Alignment explanation
Indices: 517223--517255 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
517213 CTTAGATTCA
517223 TTTCAATTCCCTCTAT
1 TTTCAATTCCCTCTAT
517239 TTTCAATTCCCTCTAT
1 TTTCAATTCCCTCTAT
517255 T
1 T
517256 GCGATCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.30, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTCAATTCCCTCTAT
Left flanking sequence: Indices 516723 -- 517222
AAGAAAGTCAGTCCTATTAGCAGTTCATTCCGGTTGAGCAAGCAGGAATAGAACCATCCGCTAAA
GACTTGTAATCGAAATCCAATACCCCATTGTTAACTAAACCTTATCCGCAGTTGAAAGGAAAGAA
AAGACTTATCTTGTGCCCCACTCCCGGTCGTGAGCACTCAGAGCGTGGAAGGAATGAATCTCTAA
TGCCAGTGCTTAGGACTGTAACTTACCTTGGGCCGGTCCCTCAAACTATAAAAACCGGTATGCTT
TCATATTGTAAAAACTTCGGAAAAGGATTTGCAGGTATCTTCGTGCATCTGCTCGGGTTGTCGTG
GGATTTCCTCTTTCTAATTCATCTGATGCTATACCTGAAGATTTAAGGGATCACACTCCCGGGTC
TTGTCCAGAGTCAGACTAGAAAGTCTCAGGCGATGAAGCAGGCTCAAGGTAAGCGAACGGTCGGG
GTTGTTTTGGTTAGAAACGAATAAGATCTTTCCATCTTAGATTCA
Right flanking sequence: Indices 517256 -- 517755
GCGATCTTTCTTGATGCAGATCGATCTTCCATTGATCCCTAAGCCAGCCTTATCAGATAGCTTTC
CTGCATGTCTTCTCTCTCAGGTTCCGGTTCCTTTAATCTCTTCCCTGAACTTGGCTCAACCTCTT
AGTCTTCAACCCTGAGATAGTTCCTTTCTTTCTATACGATATTTCTTGAAACTAGAAAGCTAGAA
AAGGCTCCAGAAAGAAGTCAATTCGCCGACAATCGCCCTTACAAGAGCAGACGATTCGCCGATCG
TCTATATTCCGATAGAATTAGATACCCATCATCAAGGATTTCCCCTTCTGTAGTATTGGCTACAC
ATATTTGTGCAACCGTTTGAAACAAATATGGTCTATTGAAGGTCCTCTCCAGGTTATTGATTTGG
ACAACGGCTACTATTGTGTGAGATTTAACACTCTCAAAGATTATGAATTTGTGTTGACTGGAGGA
CCTTGGCTGATAGCTGACCATTACCTTACTATCCGCCGCTGGACA
Found at i:519626 original size:22 final size:22
Alignment explanation
Indices: 519598--519642 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
519588 ATCAAGACCA
519598 AGCCAAAGCATACCATCTATTT
1 AGCCAAAGCATACCATCTATTT
519620 AGCCAAAGCATACCATCTATTT
1 AGCCAAAGCATACCATCTATTT
519642 A
1 A
519643 AAAGCATTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.27
Consensus pattern (22 bp):
AGCCAAAGCATACCATCTATTT
Left flanking sequence: Indices 519098 -- 519597
AAGACAGAATCACCAGAAACCTTAACCCCAGCCCCATGCAATAAAGTACCATTGTGATCTCGTAT
GATAACTCCAATACCAGCTTGAGAAGTTTTGCTGCAGAATGCACCATCACAATTCACCTTAGACC
AATCAGGTTTTGGTGGTTTGGGCATTAGGAACAGGCTTAACTTATTTTCTTGTTCACAATCCCTT
TCAGCTTTGAGGGAAGAAGACAGTCCTATAGAATTAGAATACCTTATTGTCGAAAAAACCAAGGG
GATAGATGCCGCTCTCAAGTGGAATCTTTTGAAGTTTCATTTTCTGCTATTGCTATCATAGATAA
AGAAGTAATAGATCTCGTTAACGGAGTTCTATGTCTGGCTTTCGGTTTACCTTGGTTTTTTTCTT
TTAAGGCAACCTCGATTGGAATTAGGCTTTTTCCAGAGAGATCTCGAGAAAATTTATTGAAGAAG
GTGAAACTGGCGCTTGCTTAGAGTTCGATGCAAGGATCAAGACCA
Right flanking sequence: Indices 519643 -- 520142
AAAGCATTCCTACCAAAGCAAACAATTACTTCGACTGCACCGCTGCAAACTCTCCTACTGATTAA
AAATTGCTTCATTAACTTCTGATGTGAAACCTATCGTTACAAGCGAACTGGAAAGGCTAAAAAGA
CTGCCTGCCATCGCGTTAAGATTCGGAGATTCTCGTAAAAGTCAATCCAATCCCTGAACTTACTA
ACTCGCTCGCATCACAGGAATTCGGGAACAGCTTCTTCTCAACCTCCCAAGGAAGTATGGTAAAT
AGCCTTTTCTCAATAAACGTATTCGCTGCCCGCCTAGTCAACCCAGACTGTTCGCTGGCTAGAAT
TGAGTAGGATTGAATTGACTGGGAATTTATGAGTTGGGTTCTTGTTGATCGATCTTGGGCTTCCT
TCTACTTTGATTTCCTTAATCATGTTTTGTCTTACATCTACTGAGATTCATATTCTATGGAATGG
TGAGAAGACTGAATTCTTTAAACCTTCACTGAATTCTTTAAGCCT
Found at i:519648 original size:19 final size:20
Alignment explanation
Indices: 519601--519649 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 20
519591 AAGACCAAGC
519601 CAAAGCATACCATCTATTTA
1 CAAAGCATACCATCTATTTA
519621 GCCAAAGCATACCATCTATTTA
1 --CAAAGCATACCATCTATTTA
519643 -AAAGCAT
1 CAAAGCAT
519650 TCCTACCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.26
22 20 0.74
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (20 bp):
CAAAGCATACCATCTATTTA
Left flanking sequence: Indices 519101 -- 519600
ACAGAATCACCAGAAACCTTAACCCCAGCCCCATGCAATAAAGTACCATTGTGATCTCGTATGAT
AACTCCAATACCAGCTTGAGAAGTTTTGCTGCAGAATGCACCATCACAATTCACCTTAGACCAAT
CAGGTTTTGGTGGTTTGGGCATTAGGAACAGGCTTAACTTATTTTCTTGTTCACAATCCCTTTCA
GCTTTGAGGGAAGAAGACAGTCCTATAGAATTAGAATACCTTATTGTCGAAAAAACCAAGGGGAT
AGATGCCGCTCTCAAGTGGAATCTTTTGAAGTTTCATTTTCTGCTATTGCTATCATAGATAAAGA
AGTAATAGATCTCGTTAACGGAGTTCTATGTCTGGCTTTCGGTTTACCTTGGTTTTTTTCTTTTA
AGGCAACCTCGATTGGAATTAGGCTTTTTCCAGAGAGATCTCGAGAAAATTTATTGAAGAAGGTG
AAACTGGCGCTTGCTTAGAGTTCGATGCAAGGATCAAGACCAAGC
Right flanking sequence: Indices 519650 -- 520149
TCCTACCAAAGCAAACAATTACTTCGACTGCACCGCTGCAAACTCTCCTACTGATTAAAAATTGC
TTCATTAACTTCTGATGTGAAACCTATCGTTACAAGCGAACTGGAAAGGCTAAAAAGACTGCCTG
CCATCGCGTTAAGATTCGGAGATTCTCGTAAAAGTCAATCCAATCCCTGAACTTACTAACTCGCT
CGCATCACAGGAATTCGGGAACAGCTTCTTCTCAACCTCCCAAGGAAGTATGGTAAATAGCCTTT
TCTCAATAAACGTATTCGCTGCCCGCCTAGTCAACCCAGACTGTTCGCTGGCTAGAATTGAGTAG
GATTGAATTGACTGGGAATTTATGAGTTGGGTTCTTGTTGATCGATCTTGGGCTTCCTTCTACTT
TGATTTCCTTAATCATGTTTTGTCTTACATCTACTGAGATTCATATTCTATGGAATGGTGAGAAG
ACTGAATTCTTTAAACCTTCACTGAATTCTTTAAGCCTTCCCGGG
Found at i:520130 original size:20 final size:20
Alignment explanation
Indices: 520105--520144 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
520095 TGGTGAGAAG
520105 ACTGAATTCTTTAAACCTTC
1 ACTGAATTCTTTAAACCTTC
*
520125 ACTGAATTCTTTAAGCCTTC
1 ACTGAATTCTTTAAACCTTC
520145 CCGGGGACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (20 bp):
ACTGAATTCTTTAAACCTTC
Left flanking sequence: Indices 519605 -- 520104
GCATACCATCTATTTAGCCAAAGCATACCATCTATTTAAAAGCATTCCTACCAAAGCAAACAATT
ACTTCGACTGCACCGCTGCAAACTCTCCTACTGATTAAAAATTGCTTCATTAACTTCTGATGTGA
AACCTATCGTTACAAGCGAACTGGAAAGGCTAAAAAGACTGCCTGCCATCGCGTTAAGATTCGGA
GATTCTCGTAAAAGTCAATCCAATCCCTGAACTTACTAACTCGCTCGCATCACAGGAATTCGGGA
ACAGCTTCTTCTCAACCTCCCAAGGAAGTATGGTAAATAGCCTTTTCTCAATAAACGTATTCGCT
GCCCGCCTAGTCAACCCAGACTGTTCGCTGGCTAGAATTGAGTAGGATTGAATTGACTGGGAATT
TATGAGTTGGGTTCTTGTTGATCGATCTTGGGCTTCCTTCTACTTTGATTTCCTTAATCATGTTT
TGTCTTACATCTACTGAGATTCATATTCTATGGAATGGTGAGAAG
Right flanking sequence: Indices 520145 -- 520644
CCGGGGACTTCGCCAAGGTGACACCCCTTAAAACCATATTTGTTCGTTCTTTGTTTACAGAAGTT
ATCACATATGATTGAGATTGCTGTAGATGATGGTAGTTGGAAGCCTCTTTCACTGTCTAGAGGTG
GTCCTCAAATTGAGCATCTTTTCTTTGCTGATGATTTCTTTGATTCTCTTTGGCGAAGCATCTTT
GTAGCAATCTTCCTCTATGATTCATTGTTGAATAAATTTTCTTCGTTAATTAAATTTTATACTTC
TACAAATGTAAGTGCTGGTACAATCCGTGAGATTTGTGAATTATCTGGCATGAGGAGACATTGCA
GTGACTTGGGCAGCTACTTGGGGGTTCCAATTCATTCTGAAAGAGTATCGAAGGCTACTTACAGG
AAACTAGTCGAGAAAGTTAAAAACAGACTGAGATAATTCTATAGAAGGCGGGACTAGATACAGAA
TCTCTCTCAAAGCATTAGTCGATAGCTAGAAAAGGTTTTCTCAAC
Found at i:520793 original size:20 final size:20
Alignment explanation
Indices: 520765--520825 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
520755 ACACCCAAGA
520765 AGAAGTACTTTGCTTTTGCT
1 AGAAGTACTTTGCTTTTGCT
*
520785 AGAACTACTTTGCTTTTGCT
1 AGAAGTACTTTGCTTTTGCT
520805 AGAAGTACTTTGCTTTTGCT
1 AGAAGTACTTTGCTTTTGCT
520825 A
1 A
520826 CGGGAAGTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.21, C:0.16, G:0.18, T:0.44
Consensus pattern (20 bp):
AGAAGTACTTTGCTTTTGCT
Left flanking sequence: Indices 520265 -- 520764
TCTAGAGGTGGTCCTCAAATTGAGCATCTTTTCTTTGCTGATGATTTCTTTGATTCTCTTTGGCG
AAGCATCTTTGTAGCAATCTTCCTCTATGATTCATTGTTGAATAAATTTTCTTCGTTAATTAAAT
TTTATACTTCTACAAATGTAAGTGCTGGTACAATCCGTGAGATTTGTGAATTATCTGGCATGAGG
AGACATTGCAGTGACTTGGGCAGCTACTTGGGGGTTCCAATTCATTCTGAAAGAGTATCGAAGGC
TACTTACAGGAAACTAGTCGAGAAAGTTAAAAACAGACTGAGATAATTCTATAGAAGGCGGGACT
AGATACAGAATCTCTCTCAAAGCATTAGTCGATAGCTAGAAAAGGTTTTCTCAACTTGCCTGAAT
CAAAAGAGCTCTCGAAACATGCTCCTATGATTTATGGTCTTGCCTGGGGGTTACTTCTATCATGG
TACAATCCTCTTCCCGCTGAGCCCCCTTTGTAAAGACACCCAAGA
Right flanking sequence: Indices 520826 -- 521325
CGGGAAGTAGTGGATTAGGATTAAAAATAAATATCGTATCGTAATCTCATATGGAACACTCTCTA
GAAAGACTAGCTCCAACAACTCCTTCTGCTTTCTTGCCTCGGGAAGTAGGAGATTTTGAGTCCTA
GAAAACCCCTTTTATACGCTCGTATGCTATTTCCAATGCTCTCCTCTCTGTATAGATAGATAAAC
TCTCCCCACGTCCAAAACCAAGACCTCGGGCATGAAGAAGGTGTAGATAAATATCTGAGCTAAGT
AGCATATGAACCTCTAGGCGAACAGTCTTTAGAGCTGACTTTCGTACCATTCCTTTCCTTTCCCG
TTCTTTACTCTCTTGCTGGCTTATCTGCGAGTGGGAAGCACATTCACTCTAGCTCTTAGGCTGTC
TTCTTAATGTCGATTCGAAGATAGACAACTCACTCATCTGAAGAGATTACTCTATATACGATATT
TCTCGAGTTGTAAATGAAGATTCTTCGACTCAAGAGTGGTAGTCA
Found at i:527175 original size:21 final size:21
Alignment explanation
Indices: 527151--527193 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
527141 CCTCGGTCTT
527151 GTTGACCAACTCCTTTTATAA
1 GTTGACCAACTCCTTTTATAA
527172 GTTGACCAACTCCTTTTATAA
1 GTTGACCAACTCCTTTTATAA
527193 G
1 G
527194 CTCTTCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (21 bp):
GTTGACCAACTCCTTTTATAA
Left flanking sequence: Indices 526651 -- 527150
AAAAGGAAGCACCGCCTTTTGACTTTAGGCTTAGGCCTTCATTGTTTGAAAGCCCCTCCGCGGCA
GTGTCGAAAGACCTTGGTATACCCTAAAGGCGGTTGCCGACCATTTAGGACCAAACTTTTCGGAC
AATGAGAGGGCTCAAAGACGTCGACAGCCAATCCAGCCGTTTTCTTGCTTCCATACGCCTATCTG
ATCTTTTGAACAGGCCTTCAGCTTCAATCAAATAGGACATAGATATAGATCGAGATTCACTCATA
AGACAAGCGACTATCAACATGGATAAGGTTTGGAGCACTGCAACCAGCCTTTATACCCGTCGAAG
AGATGGATCCTCTGGACACCGAAGTTCGGGTCACCCCTGATGACTCAGAAGAGATAGAGCGGGGG
TTGGTAGCCGTCAATAGCCCAGATGTAGATAGAATGTGGGGAGATTGAACTTCAAGCCTTACTCT
TTCTTCTGTGTAATGAGTGGATACTAGTTCGAATTCCTCGGTCTT
Right flanking sequence: Indices 527194 -- 527693
CTCTTCTTATTCAACAACCATAGGGCAGGGAACTGACTAAGCTAAGCCAAAAGGTGGATGCCCAC
TGCTGAGATTGAGAAAGCTTTAGGCCTGAGGCCGCATTCGGAAGGAGAAAGGTAAAGGGTGCGTC
TCGATCTAAACCACCTTTGTCTACTAAGAATCGATACATAGAGAAGGTAGCATGTCGAACTAGAA
TGCCCTAAGGAAGGTTGCTAATCCTACCTTGATCACCCTTATTGGATAAGTTCTTGGTCGTATTC
ATTGATTACATCCTCGTCTATTCTCGAAATAAGGAGTAGGGAAAAGTTGTACGCAAAGCTCGAGA
AATGTCCATTTTTTCTGAATCGGTTGGTTGGGGCATGTGGTGTCTTCCTTAATAACCCATTAATT
TTTGAAGTTCATAGCAGTCCTGGGGCTCGGGGAGCTGGAGTTCCAGCAGTTGGGTTGGACTCTCT
TTCGATAGCGAAAAAGTTTCAGTTTCATTTCGATGGAGTTGTATC
Found at i:529513 original size:17 final size:17
Alignment explanation
Indices: 529493--529527 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
529483 AATCATCTAT
529493 ACGAATAATTCATTCAA
1 ACGAATAATTCATTCAA
529510 ACGAATAATTCATTCAA
1 ACGAATAATTCATTCAA
529527 A
1 A
529528 AGGGAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.17, G:0.06, T:0.29
Consensus pattern (17 bp):
ACGAATAATTCATTCAA
Left flanking sequence: Indices 528993 -- 529492
AGCTTAATGCCGAAGTTTAAAGTCTTCTATGAACTTGCTTGAACTAATTACTTGAGAGTGATATC
AACCTATGTATGCTATCCCTCGAAAATGCTAGTGCTTTTGATTGAACAGCAAGCACTTGAGGGTT
TATGTTGTTATAGCTTACCCCAGAGTGGGCAAGGGGGTAAATAGTCGCATCTGATGTCTGACACC
TGCCTACTTCTTTTACGAAGTTTTTCGCTAAACAACCCGTTCCTCTGAGCCCGTTGATGGGTATA
GCGCTTATGACTCTTTCATCAGTCAAGTTGATAGGAAAGCAGATGGAGGAACTAGCACTCTAGAT
ACGCTAGGCGAAGGGGCGGTATGGTATGACGCATAGATCTGCCCTCGGGTCCGCACTAAGATAAC
ATCGGGTAACTCCGAAAGGATCATTCCCAGCCTCACACTACAAATGATATTTCGTATTTCATAGT
GTTGATTTAAGAGGGGAGTATCCACTAAATGGACCAATCATCTAT
Right flanking sequence: Indices 529528 -- 530027
AGGGAATCATACTCCGGAAAGACCTAAAGCTCTTTCAACAATTGGAAGACTTGCCATTGCTAATG
TTGATACCAAGTCCACTTTCTTCACTATTCAATCAATCGGACTTACTCTGGTTGACTTGGATGAG
TCCACCTATGAGTCGTCAGCTGAGGTTTGATTTTCTCTTCCAACTCGCCTGTCTGAAACGATATG
AATGTCCCTTGAATCCGCGATCACTAGTTAATGATCTGATCTTGCTGCTGAGGTTGCAAGGGCGA
TTGGTGTCTAATCGTCTTCTTCCTCTGTATCGGCTTATTCGTCTGAGCCTGTAGGCATCTTATTC
GCTACGCTTTTACCCTCGCCAAAAGAAAGATGCAGAAAGAAGGAAAACTAGGTGGGCTGGTGACG
ATCCTCAATTGAAAGCCCTTGGTCCGCTTCAGCTGCCTGACTTCATGAAGGCTTTTCAATTTGAA
TACGACTTGGTTATCTCTGATAAAGGTAGCTGTTAGGCTAATGGA
Found at i:530995 original size:20 final size:20
Alignment explanation
Indices: 530972--531011 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
530962 AAATGAATTA
*
530972 GACTATCAAAAGGGGTCGGC
1 GACTATCAAAACGGGTCGGC
530992 GACTATCAAAACGGGTCGGC
1 GACTATCAAAACGGGTCGGC
531012 ACTCACACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.33, T:0.15
Consensus pattern (20 bp):
GACTATCAAAACGGGTCGGC
Left flanking sequence: Indices 530472 -- 530971
GTGTGTCTTCTTTATTCACATATTAAGTGAAGATGCATGCTTTAAAGAGCGAGCCGACCTCCAAT
ATCAAATAAACGATGATAACAGATAAGTCGCTATTCTCATCTCTCATTAGTATACATTGACTTGG
CAGAGGATTTTGGAAGATTCTCGTATGCTAATTAGACTCTTGAATAAGGTTCAATTAGTCATAAA
GGACGGTCTAACCAAGGATTATTCTTACTTAATAAGTAAGCAGATTTTCAGGATGGGGCGTAAGT
CGGGATGGCTATTTTGTGCTTTGTACTTAAAGCAATGTAGTCTCTCTCTTATGTTATTTATAGGG
GTTAACCCTTCTGATCCTGTTCGTTTTGTGCAATTTGTTCCTGTCTCCCTCACTAGATCCGGACT
GCCCCGAATCATTCCTTCTTTTCATAGGAGAGTGATAAAGAGCGGTTCATCCCGAGGAGATATGC
TGATCCGGTTTTACTTGTCTATATTCACTATATCAAAATGAATTA
Right flanking sequence: Indices 531012 -- 531511
ACTCACACATTCGCTTCGATATGTGATCCTCCTACGGATATGGATAAGATTCTGTATAATGTGGG
CTCCCCGTTTAGAGGGACAATAAGGGAGCTTATGTTACTGTCCATGGATCTACACCATACCCCTT
GAACAAGGGTTGAAGTGGGAACCTACCTGGAAGGCCTTACCGACTACGCGAGGTACTAGAATGTA
TCTCTGATTAGTTGGGAAACGGACTGAACGAGATTTGAGGAATGTCAATTCCCTATTCTTTCATT
TACACTTAAGCTTCCCCGGCACACTTGCTATATCTTGATCAGAGTGGAAACTCAATCTTTCTATA
TCTGGTAAGAAAGAACTTCATTCTGCGCACAAAGAGAAGGAAGTGGCTTTCGTGCTATCGAAACT
ACGCGCGTTGATTCCTGGTTAGTTGTTATATCTTATTAGGTTACTTGTTATATACGAAAATAGAA
GAACGTTCAGTTCAATCAAAATGAAAATAAAATAGAGGAAGGAGC
Found at i:534873 original size:22 final size:22
Alignment explanation
Indices: 534845--534888 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
534835 TGCATTCCAA
534845 GGGGGTGGAATAACTTAACAAG
1 GGGGGTGGAATAACTTAACAAG
534867 GGGGGTGGAATAACTTAACAAG
1 GGGGGTGGAATAACTTAACAAG
534889 CAAAGTGCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.36, T:0.18
Consensus pattern (22 bp):
GGGGGTGGAATAACTTAACAAG
Left flanking sequence: Indices 534345 -- 534844
TGTAGTTGCCCGGTTTGTTCAACACAGAACTGCACCCGAGAGACTTATAATGGACTACGACAATG
CCGAGATTATATACACAAATAAATTAGCAGAAAGAAAAGATGCGCCATTCGTAGAGTTCCCATTG
AGTATCCTCTTATGCCCGGTCGAGTGACAAACCTACCTATCAGGCATCTACCGCGGCATCCCTCA
CGGGGCAGAGAAGAGACCCAAACGAATGAAAGTCACCAGGGTCAGCAGAAGTTATTTCAACTCAA
AGAATAGGATCTCCCGATTCTAAAATGGAAAGTAGTTGACCTATTAAGAGTCAATCTTTCCTACG
TTCTTTTACCGTACCGCTTTTTCCATGTCTATTTGAGGATAAAGATTATAAAATAAATGGAAAGA
GGAGAGCGGGTGAGACTATGATATATCGGACCATCGTCAGATAGAAAATGCTCTTCCGTGAGAGT
CAGCAATCAAAAATGTCCCAGTCTTAGTGACATGTTGCATTCCAA
Right flanking sequence: Indices 534889 -- 535388
CAAAGTGCCGTAGCTCAACATCTTGAAATGCACCTACACCCTCTTAGATAGATGAGACCAACCAT
CCCTTTCTTTCCCATGCCTTCCCAAAGTCTTGCAGAGCCTTTGGTTTCACCATACTTTTTTTATA
CGTTAGCACAGCATCACCTCTCAAGAGCACAGCTTCTACGAAAGCACATCTCTCAATCACTACGC
ATTTAAAGTCTTTTCAATGGAGAAGAATGGCTCCATGCGTTCTAAAGTTGACGATTTCTAGTTAG
ATGATATCCAGAGATTCTTATCTTATTCCGGAAACATTCTACAATGTCAGCTTTAACATCGCCTT
TACTGAGACTGCTTCTGAGAACTGTGGCACACCTTAAAGAGTCTTCTCATTAAACGAGACAGTTC
GCTTCCTATCTAAGATATACGCGAGAAATTGGGAGAGCTTATGACTAACAAGGATCAAAACGAAA
TTATGGCTGCTGTGTCAACATCACAAGTCATGCTATATCACCATT
Found at i:538313 original size:19 final size:19
Alignment explanation
Indices: 538289--538326 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
538279 TAACAACTCC
538289 TCAACAAGGAAAACATCTG
1 TCAACAAGGAAAACATCTG
538308 TCAACAAGGAAAACATCTG
1 TCAACAAGGAAAACATCTG
538327 CTTGTCTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.21, G:0.16, T:0.16
Consensus pattern (19 bp):
TCAACAAGGAAAACATCTG
Left flanking sequence: Indices 537789 -- 538288
CTACCCCTCTCCTTCATAAAGTAATGGCTTTCCATTTTTCTTTTTATTTAGTTCAGTTGCTCAGT
CACTTGATTGAGGCTAAAAATTCGATCTCTTGTCCATTCGAAGTAGCAGGAGTCGATCTATTATG
CCTTTTGCCTGAGCCTGGTCCCTTTCTACCCTTGGGACTGGAAGTGAATGAGAAGAATTCTATAA
TAAATTTCATTCAATGAATCGATACTCGAAAGAACTCAATAGAATCGAACAACGATTCTGTCAGC
TATAGTGGATGACACTCATTTCTCCGGTCTTCAGAGCCCTCAGAGGCTATGGAGGGGGATAGGAA
TTTTGAGAATGGCAAGTGCTTTTCCTTGTCTTAGATTAGTAAGCTAGGACTATAGAGTTGCATTT
CTATTTCATCAAATAAGGTGCACTACAAAGAGCTATCTAAATCCTATGGGAGATCAAAGGGAGCG
GGTTGCGAGTTTCTCCTATGAAATTGATTGGTTGATAACAACTCC
Right flanking sequence: Indices 538327 -- 538826
CTTGTCTACTTCGATTGGCTTCTTCTTTCCCTTCTTGGCATCAAAGACACCTAGCTGGATCAAGG
CAGAGGCCATTTACAAGTAATCTCTGATTGGGAATAGCCTTTTTGGCTCGGTTATGCTGGGCGTA
TCCGCTCCTTATCTTCGAAGGGGCGTAGCTAGACTGGGTGGGTATCCTTGGCCGCTCGGCTAGAC
CTTACTCGTTCTGGATCAAGGTAGCATCACTCTTCGATGGTCGATTCGATCGCTGCTTATCGCCA
ACTTCTCTCATCCTCTCTTCGGCCCGGTTCGGTGTTCTCGGTTCTGTCGAGCTTTTGGTCTTTCC
TGTCAGTAAAGAGGTCAGCTAGCCTTTGAGAAAGAGACTCTCGAGCCACCACCCAACCTATCTAA
AGGTGCTCTTTGATCGAATGTACCATCCATAGGGATAGGCCTTAAGACAGACGCAAGCCACTCAT
GAACAGTACGTAAGAGTCTCTGGTTTATATAATTAGCAATAGCAA
Found at i:538848 original size:26 final size:26
Alignment explanation
Indices: 538810--538861 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
538800 TCTGGTTTAT
*
538810 ATAATTAGCAATAGCAAATATCCTCG
1 ATAATTAGAAATAGCAAATATCCTCG
538836 ATAATTAGAAATAGCAAATATCCTCG
1 ATAATTAGAAATAGCAAATATCCTCG
538862 GATTGAACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.27
Consensus pattern (26 bp):
ATAATTAGAAATAGCAAATATCCTCG
Left flanking sequence: Indices 538310 -- 538809
AACAAGGAAAACATCTGCTTGTCTACTTCGATTGGCTTCTTCTTTCCCTTCTTGGCATCAAAGAC
ACCTAGCTGGATCAAGGCAGAGGCCATTTACAAGTAATCTCTGATTGGGAATAGCCTTTTTGGCT
CGGTTATGCTGGGCGTATCCGCTCCTTATCTTCGAAGGGGCGTAGCTAGACTGGGTGGGTATCCT
TGGCCGCTCGGCTAGACCTTACTCGTTCTGGATCAAGGTAGCATCACTCTTCGATGGTCGATTCG
ATCGCTGCTTATCGCCAACTTCTCTCATCCTCTCTTCGGCCCGGTTCGGTGTTCTCGGTTCTGTC
GAGCTTTTGGTCTTTCCTGTCAGTAAAGAGGTCAGCTAGCCTTTGAGAAAGAGACTCTCGAGCCA
CCACCCAACCTATCTAAAGGTGCTCTTTGATCGAATGTACCATCCATAGGGATAGGCCTTAAGAC
AGACGCAAGCCACTCATGAACAGTACGTAAGAGTCTCTGGTTTAT
Right flanking sequence: Indices 538862 -- 539361
GATTGAACTACCTACTCAGACCGAGAAGGAGGATTGGCTAAGAGCTTTACTAGGTATTAAGAGTA
TAGCCACCTGAGCTGCGAGGATTCGCTCTTGACTCTTTCTTGGCTTAGGAGCCTCTTCCTCTCCT
TTCAGTCTCGCATCTTGAAACCTTTGCTGCCGTGAAGGTATTGATTCCTAAGATGATTCTTTGGC
TTCGGGTTCTCTGAGCTATACCTTTCCACTTCTTGAGGTCGAGTTCCAACCACGAGACCTACTGA
ATTCTATTTATATTATAGAAGATATAAGAAAAAAGGGCTTACGAAAGCAGTTCTGTCTGGAGAAA
TTGCTATTTCAAGCCGGTAGCTAATTACGAGGTAGGACGAAGCCTACACGGAAACCCTATCGGAG
GGGAGGTAATCACGGCGCGAAGACGGATCGAACCCCTAATGGATTAAAGCGCTGCCCCTTTCCCG
ATACACGATGAGATGATAGTTTGAAAAAAAGCTTAAGGGGCTACC
Found at i:550957 original size:34 final size:34
Alignment explanation
Indices: 550914--550981 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
550904 AGTCCCCGGG
*
550914 AATGGAGGCAATTCTATTTGCTTTCCCTTCTTAT
1 AATGGAGGCAATTCTATTTGCTTCCCCTTCTTAT
550948 AATGGAGGCAATTCTATTTGCTTCCCCTTCTTAT
1 AATGGAGGCAATTCTATTTGCTTCCCCTTCTTAT
550982 TGGGTAGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.43
Consensus pattern (34 bp):
AATGGAGGCAATTCTATTTGCTTCCCCTTCTTAT
Left flanking sequence: Indices 550414 -- 550913
AGGTGAGCCAATAGGCTTTGAGGATTACGAGGTGATTATTGCCCGTAGGAGAAGAGTTGGCAAGC
TTTTACGCGGTGAATGGGAATAGGCCCCGCCCGTTAGGGGACGCAGTAGGTGAGCCGTACGTAAG
TCAAGATAGGCAGCCTTCTAATATGTCCATTTATTGGGATTGTAGATCTTGAAAGGATCAGCGAG
TCCTCGTTTTACAGACCTTTTCGCATCAGCCTCTTCGGATTACTATTTCTTGTTTCGGGAATTCA
GTAGTCGATTAGGATTCCATTAAATCACTTAAGTAAGCCAATAGCCCACTCCCTATTTACAACCT
TTAGCTAATACGAAGGCTAAACAGAAGTCCCAGTAGCTCAATAGACTAGCTGACGAGCATAGGTT
TCAAAGGCTTAGCTCGTTAGTATATTAGAGTTAGCTCAATGAAATGCAGATTATGAGATTCGGAT
AGGCAGCGCTTTAGAGTTGTCTAAGGTGGATTCTTAGTCCCCGGG
Right flanking sequence: Indices 550982 -- 551481
TGGGTAGGAAATTCAGTATGATGAAGAGCGAGCTCACTTTTTAGATAGAGAAGGAGGGACAGAAG
AACCTATAGCAAGAGGAGTTCCTATAACTCTAGCTCATGTTCCTGCTTATGTAAGTAGTGTATTC
GGAGTCCTAGTTGGATCTCTCTGTAAACTCAAATTACCAGCAAAGCTAGGTGGATCTATTTTCTT
TGACCTGATTCGAAGCATCTGGCTGACCACAATGGAGGTAATGTAGGCTTTCTCACGACACTAAA
ATCCTCTTGCACCATGTCCCTGTGAATAGACGGGGGCGCAATAAAAGGCAGCCGGGACTATAAGC
AGTGTGACCCCATCCCTTACTTTTAGACAATTACCACGAGCAGATGATAACGGCTACACGGCATC
TTCCTTCTCCGCGTAATCCCTTTATTAAGAGATTAGATTCCACATCGGTCTTTTTCCTAGGTCTG
ATTATTCGATTCGGAGTACAAATAAGTAAGTTAAGCCCCCTACTC
Found at i:550995 original size:34 final size:33
Alignment explanation
Indices: 550915--550995 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 33
550905 GTCCCCGGGA
* *
550915 ATGGAGGCAATTCTATTTGCTTTCCCTTCTTAT
1 ATGGAGGAAATTCTATTTGCTTCCCCTTCTTAT
*
550948 AATGGAGGCAATTCTATTTGCTTCCCCTTCTTAT
1 -ATGGAGGAAATTCTATTTGCTTCCCCTTCTTAT
550982 -TGGGTAGGAAATTC
1 AT-GG-AGGAAATTC
550996 AGTATGATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
32 1 0.02
33 2 0.05
34 40 0.93
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (33 bp):
ATGGAGGAAATTCTATTTGCTTCCCCTTCTTAT
Left flanking sequence: Indices 550415 -- 550914
GGTGAGCCAATAGGCTTTGAGGATTACGAGGTGATTATTGCCCGTAGGAGAAGAGTTGGCAAGCT
TTTACGCGGTGAATGGGAATAGGCCCCGCCCGTTAGGGGACGCAGTAGGTGAGCCGTACGTAAGT
CAAGATAGGCAGCCTTCTAATATGTCCATTTATTGGGATTGTAGATCTTGAAAGGATCAGCGAGT
CCTCGTTTTACAGACCTTTTCGCATCAGCCTCTTCGGATTACTATTTCTTGTTTCGGGAATTCAG
TAGTCGATTAGGATTCCATTAAATCACTTAAGTAAGCCAATAGCCCACTCCCTATTTACAACCTT
TAGCTAATACGAAGGCTAAACAGAAGTCCCAGTAGCTCAATAGACTAGCTGACGAGCATAGGTTT
CAAAGGCTTAGCTCGTTAGTATATTAGAGTTAGCTCAATGAAATGCAGATTATGAGATTCGGATA
GGCAGCGCTTTAGAGTTGTCTAAGGTGGATTCTTAGTCCCCGGGA
Right flanking sequence: Indices 550996 -- 551495
AGTATGATGAAGAGCGAGCTCACTTTTTAGATAGAGAAGGAGGGACAGAAGAACCTATAGCAAGA
GGAGTTCCTATAACTCTAGCTCATGTTCCTGCTTATGTAAGTAGTGTATTCGGAGTCCTAGTTGG
ATCTCTCTGTAAACTCAAATTACCAGCAAAGCTAGGTGGATCTATTTTCTTTGACCTGATTCGAA
GCATCTGGCTGACCACAATGGAGGTAATGTAGGCTTTCTCACGACACTAAAATCCTCTTGCACCA
TGTCCCTGTGAATAGACGGGGGCGCAATAAAAGGCAGCCGGGACTATAAGCAGTGTGACCCCATC
CCTTACTTTTAGACAATTACCACGAGCAGATGATAACGGCTACACGGCATCTTCCTTCTCCGCGT
AATCCCTTTATTAAGAGATTAGATTCCACATCGGTCTTTTTCCTAGGTCTGATTATTCGATTCGG
AGTACAAATAAGTAAGTTAAGCCCCCTACTCATCCATCAGTCTCA
Found at i:560583 original size:21 final size:21
Alignment explanation
Indices: 560554--560596 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
560544 AGGGGATCTA
560554 TTAAAAGTATCGATTCTTTAC
1 TTAAAAGTATCGATTCTTTAC
*
560575 TTAAGAGTATCGATTCTTTAC
1 TTAAAAGTATCGATTCTTTAC
560596 T
1 T
560597 GGACTGGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (21 bp):
TTAAAAGTATCGATTCTTTAC
Left flanking sequence: Indices 560054 -- 560553
TCACCGAAGCCAAAGCATCTCCCTGAACTTTCAAAGACCGGCTCGGGCTCGTCATTTATTTGATT
GGGTATTTAAATTGATCCTCAACTGAAAATCTATACATCAAGTGAGAAAAAAGCCATCAATCTTC
TATTGGCCATAGCGATAGTTTCCTTAGTCTTTCCCGTAGATGAATATCTAAGAGAAGAGTATTAG
GATTGAATAGAAGGTAAATCCTTATCCAACTCGTGCAGCTAGTTAATGGTTTCCCACTCGCAGAT
AAGCCTTCGAGCCTAAGGAATATTCCCTCGTCTTACTTTCTAAGACTGAGCTTAGCCTAGCTAGC
ATAGCACAGACAGAATAGAATGTAAAGCTTTCCTAAGAGCAGGGAATCTAGGGATTTAGAAAAAC
TTTGGCTTGAAAGCGTGGTAGAGATGGGGGACAAGTCTTAGGAATAACTATCCAACAAAGAAGAA
CGATAGGCAGGGAATACGCTACCAGCAACGGAAGCAGGGGATCTA
Right flanking sequence: Indices 560597 -- 561096
GGACTGGGTTATCTCAAGCTGTTGAAAGCCATAGCTAGTTACCGAGGAGTGAAAGATAAGGGGGC
AGGGCGTCGAACTCTTTCTCAATCCGTGCTTCATGCAATCCCGCTTTTTAAAAGTAGGGTATAGG
TCTAGTTGAGACTGAAGTAAATGTTGAAGTTTCCTCGTCTTCGGCATCTTAAGATGCAGTGCCCG
TCATTCCCATCAGTACGTTCTCAAGCGTAACTACAAATCATGAAACTGGCAAAGATTGAATCTAG
TCTTTGACTTTCTAGCCATTTTTACTGGGTTTGGGAATCTATATGGCACACGAACGGTTATAATA
TAAGGTTCCACAGCTAAGCAAGCATATGAGCTATTGGTCGCAAAGGGGTGATAAGCAATCGATTC
TCTCATGTCAGCTAAAATGTCAACTAGTCGAGGAGTTAGTTCAATAGCTTCAGCATTTAATTCAA
GTGATGTGAAATCTAGACCTTTTAGGGAAGGAGTTGTGGCTTTCT
Found at i:562935 original size:18 final size:18
Alignment explanation
Indices: 562912--562947 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
562902 TCAGTCTTCA
562912 GTCTTGCTATTCTCAGGT
1 GTCTTGCTATTCTCAGGT
562930 GTCTTGCTATTCTCAGGT
1 GTCTTGCTATTCTCAGGT
562948 AAGGGCCAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (18 bp):
GTCTTGCTATTCTCAGGT
Left flanking sequence: Indices 562412 -- 562911
GATCATCTAATCGGGCAGTTCACTATTCAATAAGCAAACAGCTTACATGGATTACACGCGGGGTT
TTTTCAACGCTTTTGAGAAAGTAAGTTCGTTCAGGAAAGAATAAAACAAAAACCGAAACAAAAAA
ACAGGCTAGAAAGAAAGGTAGGAGAAAAAGTAAAGGTAGTATGACCGTTCCGAGTGACCCTAGTT
GAATGCGGTCACTCGTCTCTAGGCGCCAGAAGGTTATTAGCAGGGTTCGCTTCGCTCCTCAAGTT
CCAGCTCGTACGGAAGGGACCTTTGTTCTGTCTGTCTACCTATTGAAGGAAGTAAACCCCTGTAG
TAAACTAGGCCCTCAAGGAAGGCTTTAAGGTCTTTGTGTGTTAGCTGCCTTATTATCGTAGGTTT
GCTGGCCCGGAGGAGTTCGCTTCGCTCTGCCATGTCCTAAAAGCAATCAAGCAAGTGATCAACAA
GTAAGCAATGAAAAAGAGTTATGCTGCTGATTGGGTCAGTCTTCA
Right flanking sequence: Indices 562948 -- 563447
AAGGGCCAGGGAAGAAGCGCTTTAACTATCAGTACTATAGCTGTTTTCAAAAAAGAAGGAATAAA
AGCACTAAAAACCCTAGTTTCAAATATTGTAAGAGAGTATTGATGAGCCTGTCCATACTTCTAGG
CCTCAGGCTCCGGATGGACATACTGGAACTACTACTAAGACTATTTCTAAGTAGTCAAATGGTAC
TCACTGGAAAAATGGTGTTGGAGTTGGGAAAAGTAAAGCACAAGGAGGTGCTCAAGTTGCTAGAC
AGAAACTTTCGGGGGGTAAAGAGGTGTTAACCAAAGCAAGAACATCGGGAAATATGATGGCTGCT
GCGGACTCGGTTAGGCCTGTTGTGACTAAAATGGGGCAGGTGGTGAATCGGAAATCTGGGTCTAT
TAATAGTGGTGATTTTTCGGGAAATAATGTTGTAATGTTGGATTCTCTTTCTTTAGTGGATGATG
ATGTATTGGGTGGTATGGGTTTAGTTGATGATCAAATTGCAGCCA
Found at i:564421 original size:24 final size:24
Alignment explanation
Indices: 564389--564436 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
564379 CCGATACTTG
564389 TACAGTGTAAGGAGGAAGTTTATA
1 TACAGTGTAAGGAGGAAGTTTATA
564413 TACAGTGTAAGGAGGAAGTTTATA
1 TACAGTGTAAGGAGGAAGTTTATA
564437 CGGATGCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.29, T:0.29
Consensus pattern (24 bp):
TACAGTGTAAGGAGGAAGTTTATA
Left flanking sequence: Indices 563889 -- 564388
TTTTTCGGGTGGTTTGTGGCTGTGCTGGGAGGGACAGAATGTTAGTTTGGAAATTATTTTCTCAT
CAACGCAAGTTGTACATGCGATTGTTAGCGTGGGTGAGGAAAAACAATGGCTTCTATCGGCGGTT
TATGCAAGCCCTACCTTAGCAGTAAGAAAACGCTTATGGGAAGCTATGGAAGATTTTGCTTCTGG
AGTCAGGTTGCCATGGATGATGATAGGGGATTTTAACGATGTGAGTAGTAGTGTGGAGAAGTGGG
GTGTTGCCAATGTTTCCATAAATCGATGTGTGAGATTTAACAGTATGATTGCTAATTGTGGACTT
TCGGACCTTGGTTTTCAAGGACCTAGTTACACTTGGACGAATAGAAGACATGGTGGACTTCGCAT
TCATGAACGCTTAGATAGAGCGCTTGCAAATGCTGATTGGCGAATACTTTTCCCGGAGGCCATTG
TGAAACATTTACCAAGATTCTATTCGGACCATTGCCCGATACTTG
Right flanking sequence: Indices 564437 -- 564936
CGGATGCTTCGAAAAGACCCTTTCGGTTCCAAGCGATGTGGTTAAAACATGAAGAAGCACCAGAT
TACATAGTTAATTGCTGGCAAAAAGTGGAGGGGGATTTGGTTACCAAGTCTAATCTGTTAGTTGC
GGCATTGAGAAAGTGGAATGATGAGATTTTTGGCAATGAGGAAAAAATTATTGCGAGCAAGAGTG
CTTGGTGTGCAGCGAGCCTTGGCAAGATTTCAATCTAATAGATTGCTGGACCTGGAGCGTGAATT
ATTATTGTAATACAATCAAATTTTGGAACAAGAAGAGTTATTATGGTTCCAAAAGTCCCGTGTAA
AGTGGTATAAGGCAGGGGAAAAAAATACTAAGTTTTTCTACTTGTCAACAATCTGTAGGAGACGA
AGGAATAAAATCTCGATGCTTAAAAACGATGATGGGGATTGGGTTTTGGATCAGACAGTGCTGAA
ATCCATGGTGAAGGAGTATTATGCTCGTTTATTTACGGAAGATAC
Found at i:571063 original size:21 final size:21
Alignment explanation
Indices: 571034--571077 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
571024 TTTCACTTTC
*
571034 TTCCTAACAAATCTCTTATTA
1 TTCCAAACAAATCTCTTATTA
*
571055 TTCCAAACAAATCTCTTCTTA
1 TTCCAAACAAATCTCTTATTA
571076 TT
1 TT
571078 GTGGCACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.43
Consensus pattern (21 bp):
TTCCAAACAAATCTCTTATTA
Left flanking sequence: Indices 570534 -- 571033
TCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCAGT
TTATGCTTTAGTAGCTACCGTTTTACTGGCTATAGTATTCACTGGATTTCAAGGAATGGAATATT
ATCAAGCACCTTTCACTATTTCGGATAGTATTTATGGTTCCACCTTTTTCTTAGCAACTGGCTTT
CATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATCATATGTGGTATTCGCCAATATCTTGG
TCATCTGACTAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACG
TGGTTCGGTTATTCCCATTTGTCTCTATCTATTGGTGGGGAGGTATATGAAGGAACGAAAAAGTG
TATTAAAAAATGAAAGCTCGAAGAAAAAGAGAATCGAGCTTTTACAAAGAATTACTGCAGCTTTT
ACAATCCCTTTGATTATCATATCCAAAAAAGTCTCTTTCACTTTC
Right flanking sequence: Indices 571078 -- 571577
GTGGCACATAAATGCAGAGATCGAAGAAATTTTGGAGGATCATGTTCACCACCCACTGACCCGAA
ATGTTATCTTGGTCCAGTTGAATTTGGTTTTTATAATAATAAGCAAGGATTTTTTCTTGTCTTTC
GTTTCTTTTAAAAATTAAATGAAGAACCTAATGGTCTTGTCAGAGCCTAGAAAGCTAGAAAGCAA
AAGAGTGAGGAAAGGGGCGACTGGCTGGGGAAAGAGGGAAGGAACCCCAAGGAAAGAAGAAATCA
AAGCTCTCTAGCCGGGATATCAAGATTCACGTGCGAAGGGACAAGCGAAAGGCTTCCTAGTATAA
GAAAGAAAGTAGAACTAGGCAAGGGCAGTCGTTCACAAGAGCCTTCAACATGAGCAGGAGGAGGG
TGGTGCTACTTCTCGGGCCCACATGCCATTGATTAAGTTGAGTTTTGGAAGGCAATCCCCTATAT
AGTAGAAAGACTGATTTCAGTTTCAATCGGGTGCACAAATAGTTA
Found at i:571881 original size:18 final size:18
Alignment explanation
Indices: 571858--571892 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
571848 AGTGTGGGGT
*
571858 TTTCTTTCTTTTGGGAAC
1 TTTCTTTCTTTGGGGAAC
571876 TTTCTTTCTTTGGGGAA
1 TTTCTTTCTTTGGGGAA
571893 AGTGACGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.54
Consensus pattern (18 bp):
TTTCTTTCTTTGGGGAAC
Left flanking sequence: Indices 571358 -- 571857
CAAGATTCACGTGCGAAGGGACAAGCGAAAGGCTTCCTAGTATAAGAAAGAAAGTAGAACTAGGC
AAGGGCAGTCGTTCACAAGAGCCTTCAACATGAGCAGGAGGAGGGTGGTGCTACTTCTCGGGCCC
ACATGCCATTGATTAAGTTGAGTTTTGGAAGGCAATCCCCTATATAGTAGAAAGACTGATTTCAG
TTTCAATCGGGTGCACAAATAGTTATAGCCAATAGTCCTTCCCAAAAGCTTTATGATCAAAGCTT
TTCTCCAAGGGTTTCTAATTCGGCGCTTATCCTACTTCGATAAGACGATGCTTGGTCCTTCTAAT
CTAGCTTGCCAGATATCATCGTCTGAATCATAGTCCTCTTTAGGTATCTCTCCCTCTTCAACAGA
CTGATCTGAATCTGAGGAAACTTGTTCAGAATTCATTAACATAGCCTTGTACGATTCTTTGTCAG
CAGATTGGGAGAAGGTAGGGTTATGAGATCCATGCAGTGTGGGGT
Right flanking sequence: Indices 571893 -- 572392
AGTGACGTGAAGGGTTTTTTCCTTAAGGTGGTTCAATATATTCTCTTTCCCGGACTATAAGTAGT
CTCAATTGAATCAACCAAAGGAACCTCTAGCCAACGGTACAACCAAAAGCGAACAGTCTCACCAC
TGCCTACCCTCTTCTTCAGTCCACGATAAAGTTCCTCCAACGCCCATACTAAACCCTTACAGGAC
GAGGACCAAGATGACTTCTTCGCACCAGCATCTCTAATAAAATCAAAGATGTCACCTTGAATTTT
ATACTGTGCGTACATACATTGCACCCAAAGACTTTGTGGCTGGTTTATAAAGCGCCAAGCAGTCT
AAAAAGCAGAACACGGTTGTGGTACTCCATCTTCCTTAAGCCGAGTCCTCCATATTTCTTTGGTT
TACAAACCTCATCCCAATTGACAAGATCCTAAGCTCACCGATAAAGCCCATTCGCTGCTACGCAG
CTCACCTCTAAAGACCCTTCGCCTATCGGCATCTTATTCGCCTTG
Found at i:573893 original size:18 final size:18
Alignment explanation
Indices: 573870--573905 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
573860 TCCACGAGAT
573870 CTTTCTTAGAT-ACAGCAG
1 CTTTCTTAG-TCACAGCAG
573888 CTTTCTTAGTCACAGCAG
1 CTTTCTTAGTCACAGCAG
573906 ATGTACTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 16 0.94
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (18 bp):
CTTTCTTAGTCACAGCAG
Left flanking sequence: Indices 573370 -- 573869
GCTTCATTCGGACTTCTTTCTTTGTGGCATAGGTCTCAGTGGCAATCTTCACATTGGCATCTGGT
GGCAGAAATTCAAGGTCTGACTCTTGTTCCAGAGTAGTGGTAGTAGTGGCACTATCTCCTTTTTC
ATCAACTTTCTTTTTGCTTGGAGTAGATGGAGAGCTTGTACTGATGGGAGCAGAAGCCGTTTCTG
TCTTTTATCTTTTTCTTGCTCTTCACAGTTGGAGATACCTCAACAACGTTAGGAGCATCTTTTTC
GCTCTCATCAGAGGACTCATTTTCAGTTTCACTAACTGAGTCATCTTCGTTAGTCCCAGCACCAG
AAGATGTAGTATCCTTTCCTTTTTCAGTTTCATCTCCATCATCACCTCCACTGCTATCATCGTCA
TCATCCTTATCATCATCACTTTTCTTTCCTTCTTCTTCATTCTTCTTCAGATTCTTTCTGTTCTT
CACTTTTCTCTTTATCATCATTAGAGCTACTGACTTCCACGAGAT
Right flanking sequence: Indices 573906 -- 574405
ATGTACTGACACCAAATTTCTTGCCAGTGACTTTCTCGATTAAGAGGATTAGCATAGTAGTAATC
TCCTCACGCCATATCTTGCTTTCTCTGGTGAGTTTATTCTGAGCACGTGTGACTCCCTGAATGTC
TGTCTTGAGTTCTTTGATTGCCTGAAGTCTTTCTGTGTCCTTAGTGACAGTACGAACAAATCTTC
CCTGAGTCACATCAGAGAAGTGAGAGCAAGCAGCCTTGAGGTCTTTATGCTCGTGTGACTTGATG
GAAAATGCTTTACCAAGCATGGCAATGAGGATACCATAGCCACAAATCATTTCCTGCTTCACATC
AGACTGAAGAAGCTTTCTCTGACTTTCTGTTGTTGGCATGTCTTCATCCTTTCTACTGATGAACC
TCCATGCAGCATCATAATCAAAATTCTTAGGAGGTTTTGAGTCACCATCAATGTATTCAATATTC
AGCATCTCTCCTATAGTCTCAGCAGAGATAACGACTTCTTTGCCA
Found at i:575100 original size:27 final size:27
Alignment explanation
Indices: 575065--575118 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
575055 GTGAGTTAAG
575065 ACTTTACATCATCCCTCTTCCTGTTTA
1 ACTTTACATCATCCCTCTTCCTGTTTA
575092 ACTTTACATCATCCCTCTTCCTGTTTA
1 ACTTTACATCATCCCTCTTCCTGTTTA
575119 CATGGTAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.33, G:0.04, T:0.44
Consensus pattern (27 bp):
ACTTTACATCATCCCTCTTCCTGTTTA
Left flanking sequence: Indices 574565 -- 575064
GAATGTCGATTCTAGCTAGGTGCTATGATTTGTCTACCTCTGGGTCAGTCAGTTCTATCTTCCTC
TGCTTGAGGCTAATCATGGAATGCATTCCCCTGAAGATCAAGGGTTCTCGAATCGCTCGAAAAGC
TATATTATGAATTCAGCTTTCTAACCCTGGCTATTAGTCGAATAATGACCCCACTCACTGGTCCT
TTGCTCTGAGTCCACTCGTCCCGGTACCAAAGAAGTCAGCCCTAAGTTCTTCATCCTGAGATCTT
TGCTCCCTCAGCTACTCATGTGCACCTTCTGAAAAATATCGACCTGCCCAGCCCTCGGGTGAATC
ACAATCTTCGCCTCTAACTAGAAGGTGGTAAGGTGGTCCAGCGCCATCCACAGAGGGCACAGGGA
GTCAGTCTACAAGACAAGGGAAATTAGGCCAAAGACTCGATCTACTAGTGTACAGAAAAGACCTA
GTTCCTTATTCTCAATCATCCTGATCTTTATATGAGTGAGTTAAG
Right flanking sequence: Indices 575119 -- 575618
CATGGTAGGAACTGCTTAACTTGACAATAGCTCGACTAGGTCGCTTTCTACCTTCGAAATAGTCG
TACCCTTTGGCTCTCCCCTTCTCAACTCTAGCGATTTCAAGCGTACCAGTCTCCAATTACCTTGC
AAAGCGTTAGCGCTAGCCAGGTCAATAGTTCAAGTATCAATGAAAGTCTCTATTTCAGTAAAGTA
GAAATGACAGCTGTTTAGGTAACAGAAGACAATGCCTGCTAGAGGTATGATTCCGATCTTTGCGT
AAGCAATAGCAATTATATATGCTATCTCATTTTTGGCACAGCTCCTCTTTAATACCAGTTGGTGT
GAGGGAGTTCGCTGAGGCAAGAGTTATCTTTCAGTTGCTGCTCTGGGAGGAGGTTGAATCATTAT
TAAAGATATCCATGCACAGTAAAGATCAATAGGTTGAAATCAGATAAAGGCAAATATGGCAAATA
GGAAGAATATGAACGGGATTCCGCATTCATAGGCTGTTAGGCGGG
Found at i:576018 original size:23 final size:23
Alignment explanation
Indices: 575988--576034 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
575978 GCAGGAACTA
575988 GATATATCTTTTTCAAGTCATTC
1 GATATATCTTTTTCAAGTCATTC
*
576011 GATATATCTTTTTCAAGTTATTC
1 GATATATCTTTTTCAAGTCATTC
576034 G
1 G
576035 TGGGCTGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.49
Consensus pattern (23 bp):
GATATATCTTTTTCAAGTCATTC
Left flanking sequence: Indices 575488 -- 575987
GGGAGGAGGTTGAATCATTATTAAAGATATCCATGCACAGTAAAGATCAATAGGTTGAAATCAGA
TAAAGGCAAATATGGCAAATAGGAAGAATATGAACGGGATTCCGCATTCATAGGCTGTTAGGCGG
GTTTGGATTCTCCTGGCAAAGGCAGATATTTCTATGCATTCCTCCGCCAAGTCCAGTTACTCTCA
GTCTCTCGATTGCATCGGCCAGGTCTTCCGATGAAAGCTCATCTATTCCTCCAAGAGTTATCCGT
CTATTCGAAGGAATGAAAGCTCAACCGGAACTGCCAACAGCAGCCATATAGTCCTGCTTTGCTTA
GGCCTATTCCAACCCCTTTACCTATGCAACTATAAGAACTCCTCTTTCTTGTTCTTCAAGATTTC
CTTATAAATTGTATGGTTAATCTCGTATTTCTCAAAATAGTTAGTGCTTAGTAAACCCTTTCCAA
TACAATACCTACTGCTAAAGAGGCTTAGCTAAAAGGCAGGAACTA
Right flanking sequence: Indices 576035 -- 576534
TGGGCTGGAATCGATTAAAGTAAAGGTTCTGAAAGAAACCTCAATGAAATCGAAAATTGAAAGAT
AGTGACGAAGATAAGATGATAGTCTCTGCTTTTCATAGACCAGATGTGCCCTTAGGCTGAGGAGA
GAAAAGAGGAATCCGCCCGGACTACTATAGACTTTGATTAGTTAGTTGGTAAGGCAATAGCTTAC
CAAAGCGACTTAGAGTAAAAAGCCCGAGTTACCTCTTTCTGGTTGTTAGCGATTCTTCGATTCCC
CGAGCTTGGAGCGTGACGATCGATTCTCAAGCATTGGACAAATACAAATAAATGGAGGTCTTGTA
CAAATAAATGGAGGTCTTGCTGGGCCTTATCCGAGATGGTTGGAAAGAAAGAGGATAATTCTTTT
TATTCTCTATTACCAGGTAACTCAAAGTGCTTAACTAAAAGCCATATACATGCCCTGTTGCAAGC
CAAGGGTCCTATTACACATATTAAAATAAAACCCTAGCAACCTAA
Found at i:576361 original size:21 final size:21
Alignment explanation
Indices: 576337--576378 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
576327 ATTGGACAAA
576337 TACAAATAAATGGAGGTCTTG
1 TACAAATAAATGGAGGTCTTG
576358 TACAAATAAATGGAGGTCTTG
1 TACAAATAAATGGAGGTCTTG
576379 CTGGGCCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.29
Consensus pattern (21 bp):
TACAAATAAATGGAGGTCTTG
Left flanking sequence: Indices 575837 -- 576336
TGCAACTATAAGAACTCCTCTTTCTTGTTCTTCAAGATTTCCTTATAAATTGTATGGTTAATCTC
GTATTTCTCAAAATAGTTAGTGCTTAGTAAACCCTTTCCAATACAATACCTACTGCTAAAGAGGC
TTAGCTAAAAGGCAGGAACTAGATATATCTTTTTCAAGTCATTCGATATATCTTTTTCAAGTTAT
TCGTGGGCTGGAATCGATTAAAGTAAAGGTTCTGAAAGAAACCTCAATGAAATCGAAAATTGAAA
GATAGTGACGAAGATAAGATGATAGTCTCTGCTTTTCATAGACCAGATGTGCCCTTAGGCTGAGG
AGAGAAAAGAGGAATCCGCCCGGACTACTATAGACTTTGATTAGTTAGTTGGTAAGGCAATAGCT
TACCAAAGCGACTTAGAGTAAAAAGCCCGAGTTACCTCTTTCTGGTTGTTAGCGATTCTTCGATT
CCCCGAGCTTGGAGCGTGACGATCGATTCTCAAGCATTGGACAAA
Right flanking sequence: Indices 576379 -- 576878
CTGGGCCTTATCCGAGATGGTTGGAAAGAAAGAGGATAATTCTTTTTATTCTCTATTACCAGGTA
ACTCAAAGTGCTTAACTAAAAGCCATATACATGCCCTGTTGCAAGCCAAGGGTCCTATTACACAT
ATTAAAATAAAACCCTAGCAACCTAAGTGATCTATCTATGTGTGAAGTTACCTAGCCCTACTAGC
GCTTTACCCTGATGGCAGGCATCCGCTTTTAACCTTTATTATTTTACTGGAAAAGAAGGTTGACA
GTAACCCTTTTTCAAGTCCATGTCGTCTCCAATTGACAATATGTATGGAATCATATCCTTTATCG
GTGCTAAAAAGGAAAACCTTGGTTCACTGGTGCGGCGGTATGTGCCCCAGATAGATCGCTTTCCA
CTTCACCAGGGAATGTCGTTCGAACCGACCTGGAAGTCGCTTCCTTCCTACTTATCCCTTGGTTA
AACAAGTGTTGGTAGAACGGCTTCATATGAAGTTTCAAGACGTCC
Found at i:581196 original size:12 final size:13
Alignment explanation
Indices: 581179--581207 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
581169 AGGATCCTTT
581179 AATTCCAATTAA-
1 AATTCCAATTAAG
581191 AATTCCAATTAAG
1 AATTCCAATTAAG
581204 AATT
1 AATT
581208 TATTGGGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.34
Consensus pattern (13 bp):
AATTCCAATTAAG
Left flanking sequence: Indices 580679 -- 581178
ATGCAACTTCGGGTTGTCAATTATATCCTTTATGGAAATGGCAAACCGACTCGGAGAATTTCTGA
CACAAGTATTCAACTAGTTCGGACTTGTTTAGTGTTGAATTGGGACCAAGACAACAAGAGTTCTT
CCGCCGACGAGGTCTGCGCTTCCTTTGTTGAAGTAAGGACAAATGGTTTGATTCGAGATTTCCTA
AGAATCGACTTAGTGAAATCCCATATTTTTTATATCAGAAAAAGAAATGATCCGTCAGGATCAGG
ATTGATTTCTGATAATGGGTCAGGTCGTACCAATAAAAATCCGTTTTATTCCATTTATTCCAACG
CAAGGATTCAAGAATCATTTAGCCAAAATAACGGAACTATTCATACGCTCTTGAACAGAAATAAG
GAATCCCGATCTTTGATAATTTTGTCATCATCTAATTGTTTTCGCATGGGTCCGTTCAACGATGC
AAAATATCCCAATGTGATAAAACAATCAATTAAAAAGGATCCTTT
Right flanking sequence: Indices 581208 -- 581707
TATTGGGTCCTTTAGGAACAGCCCCTCAAATTGCGAATTTTTATTCATCATTTTACCCTTTAATA
ACTCATAATCAGACCTCGGTAGCGAAATATTTCCAGCTTGATAATTTAAAACAGACTTTTCAAGT
ACTTAAATATTATTTAATAGATGAAAATGGGAGAATTTATAATTTCGATCCATGCCGTAACATCG
TTTTGAATGCATTCAATTTGAATTGGGATTTTCTCCATCATGATTATCATCCTAATTCTTGTGAA
GAAACTTCCACAATAATTAGCCTTGGGCAGTTTATTTGTGAAAATGTATGTATAGCCAAAAGTGG
ACCCCACTTAAAATCAGGTCAAGTTTTAATTGTTCAAGTTGACTCTGTAGTAATAAGATCGGCTA
AGCCTTATTTGGCGACTCCGGGAGCAACTGTTCATGGGCATTATGGGGAAATCCTTTACGAAGGA
GATACGTTAGTTACATTTATATATGAAAAATCGAGATCTGGTGAT
Found at i:582502 original size:22 final size:22
Alignment explanation
Indices: 582477--582522 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
582467 ATTGGTCCTT
582477 TTAAGTATAAGTATTTATTTTG
1 TTAAGTATAAGTATTTATTTTG
582499 TTAAGTATAAGTATTTATTTTG
1 TTAAGTATAAGTATTTATTTTG
582521 TT
1 TT
582523 GTGGTCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (22 bp):
TTAAGTATAAGTATTTATTTTG
Left flanking sequence: Indices 581977 -- 582476
AGTATTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTACCCGGGGAACTGATTGGATTATTGC
GAGCGGAACGAACGGGGCGTGCTTTAGAAGAAGCGATTTGTTATCGAGCCGTCTTATTGGGAATA
ACGAGAGCATCTCTGAATACTCAAAGTTTTATATCCGAAGCAAGTTTTCAGGAAACTGCTCGAGT
TTTAGCAAAAGCTGCTCTCCGGGGTCGTATCGATTGGTTGAAAGGCCTGAAAGAGAACGTTGTTC
TAGGGGGTATGATACCTGCCGGTACCGGATTCAAAGGATTAGTGCACCGGTCACGCCAACATAAC
AACATTCTTTTGGAAACAAAAAAAAAGAATTTCTTCGGGGGAGAAATGAGAGATATTTTCTTCTA
CCACAGAGAATTATTTGACTCTTGCATTTCAAACAATTTACATGATACACCAATCCGCTCTTTAT
ATAGGATTTAATGATTCTTAAGATAAGAGGAGCGGATTGGTCCTT
Right flanking sequence: Indices 582523 -- 583022
GTGGTCATTTGATTTGTTAATTTGTTAATAGTAATAAAAATAGTAATAAAGAGAATAACGAATAG
AAAGTAATGGCTTGGCTCGTGGATAAACGACCAATCCTCGGTAGAAGAGAAGGTTCCATTGGAAC
TATTATTTATTTCAGGGCGTCTTGTCTCTCTTTTTTTAAGTAAAAAAAAAGAGAGACAAGTGTGA
AGAGAAATGGCAAGAAGATATTGGAACATAAATTTGGAAGAGATGCTGGAAGCAGGAGTTCATTT
TGGTCATGGTACGAAGAAATGGAATCCTAGAATGGCGCCATATATCTCTGCAAAACGTAAGGGTA
TTCATATTACAAATCTGACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGAT
GCAGCAAGTAAGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCTGATTCAGTGGC
GCGGGCTGCAATAAGAGCTCGGTGTCATTATGTTAATAAAAAATG
Found at i:585076 original size:20 final size:20
Alignment explanation
Indices: 585051--585150 Score: 200
Period size: 20 Copynumber: 5.0 Consensus size: 20
585041 TGGCTATAAG
585051 TCAACTCTTGTCTATCTTTT
1 TCAACTCTTGTCTATCTTTT
585071 TCAACTCTTGTCTATCTTTT
1 TCAACTCTTGTCTATCTTTT
585091 TCAACTCTTGTCTATCTTTT
1 TCAACTCTTGTCTATCTTTT
585111 TCAACTCTTGTCTATCTTTT
1 TCAACTCTTGTCTATCTTTT
585131 TCAACTCTTGTCTATCTTTT
1 TCAACTCTTGTCTATCTTTT
585151 GAGGAATAAT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 80 1.00
ACGTcount: A:0.15, C:0.25, G:0.05, T:0.55
Consensus pattern (20 bp):
TCAACTCTTGTCTATCTTTT
Left flanking sequence: Indices 584551 -- 585050
AGAATTGTAATAAATAAATAAAAAAAGGAAAGAGATCTAATCTAAAAGATCTTTTTCCTTCTGGT
TTGGTCCATTTTTTTTTATATCATATTTCCCTTCAATGAATATTATCTTTATATTGATATTGTTT
TTGTTTATTCAATTTCAATATTATGAGTCCTAATTTGAATAGGAATTCTTATGCTATCATATCAA
GTTAGGGTCTATGATTTTAAAAAGCTGTTCTTTCTATAGAGGGATTCCCATTTCAGTCAATTTCA
TTCAATTTAACGATTGACCAAAAGAAAATTTTAATAAATAATAAATTGCATGAACTTAGCTCAAT
CAAATACTGATATTGATTTTTTATTTTTATGCAATGATTTGTTCTAATTTATTCGTCCATATCTG
TGTGAGATAATGATAAATAATAAGGAAGAGACGAATTTACAAAAACGAGATTAGAGTTGTTTAGG
AAAAAAGGGGGTATAATTAGATATATGTAATCTAATGGCTATAAG
Right flanking sequence: Indices 585151 -- 585650
GAGGAATAATTCTAGAATCCGATTGAATCTAAGATACGAATAGTTGGTTTACGTTATGTAGGAAA
CACATGTATATGGGATAGTAGATATTGACTAGTTATATATGAACTAAAAATATATCTAATCCACC
CTACTACTGTGGTGTGGATTTAGATAGGGATTCCAATAGAAGAATAAAAGTTCTTTTGTTTCGTC
TTTGACTCTGAATAAAGAGATAAAATAAAGACAAAAAACGAAGAATTCAAGGAGTGGGTTGGAAA
AAAGAAATGGAAGAACAAAGTATCTGCGGATTTACAATCTAGTGGAGAGAAACTAAAAAAAGATA
TCGAAATTTCTGACGGTTCAATAATATTATCACTTCCATTCGGAGTTCTTTGTTACTTTTTCAAG
TTGAATCTTAGCGATGGAATAATATGGAATAATTAAGTCAAAATTCATTGGATGATTGTATCATT
AACCATTTCTTTATTTTGGTGCGAGGAATTTATCATGAATCCACT
Found at i:586222 original size:16 final size:16
Alignment explanation
Indices: 586201--586232 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
586191 AAAAAAAAAA
586201 TACATTTCTAGCTAAT
1 TACATTTCTAGCTAAT
586217 TACATTTCTAGCTAAT
1 TACATTTCTAGCTAAT
586233 ATAGAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (16 bp):
TACATTTCTAGCTAAT
Left flanking sequence: Indices 585701 -- 586200
CTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCGGGCCAAGCTGTAGAAGGTATCGCGAGACAA
CCCGAGGCAGAGGGAAAAATACGAGGCACTCTATTGCTTAGTTTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGTTGGTTGTAGCATTGGCACTTTTATTTGCGAATCCTTTTGTTTAATCCTATAAAC
ACGAGAATTATGTATTTTTCTTTATTTTATGGCTTGGGACTTACTCCTTGCTTTTTCGAATTCTA
TCAAGATTTCGCCCCTACAATTACTTATTCGTCGGGACAATAATCCAAGGGAAGGATTAATTTGA
GGATGAGGAATTATCACACTGACTCGCTTTCTTCCTTCCCCTAAGACAGAGAAACCCCCTTTTTT
TTAAAGGAGTGTTGCAACAAATAAGGTATTTTGCCATTGACATGAAAGCCGCCCCCCTAATTCTA
ATAAGTATAATTATTATTGGGAATTTTCAATTGAAAAAAAAAAAA
Right flanking sequence: Indices 586233 -- 586732
ATAGAATATATTTTTGACTCCCTTTAGAAATGAAAATGAATAATTTAATAATATAATAATAATAA
TAAATTAATAATTTTTTAAATAAAAAAAGAAATACATAGAATTAGAATAAATGGAAAAGGAGTGA
AAGTGATACAATACAAAAATAGAATACAAAAATAAGAACCGAGTTTTTTGTTTTTGTAGTCTATC
TAAAAGAAAAGTCTATCTAAAAAAAAATAGGAGATCATATGAAAAATGTAACCGATTCTTTCGTT
TCCTTGGGTCACTGGCCATCCGCCGGGAGTTTCGGGTTTAATACCGATATTTTAGCAACAAATCC
AATAAATCTAAGTGTAGTCCTTGGTGTATTGATCTTTTTTGGAAAGGGAGTGTGTGCGAGTTGTT
TATTTCAAGAATAGGCTGGATTTACCCAGTTGCACTTTTTTCATTCTAACTAGGAAAGAAAGGAG
TGCATGATCCCGCGAATTACTTCTGAATAAATTTAAAAATCATAT
Found at i:586400 original size:14 final size:13
Alignment explanation
Indices: 586372--586396 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
586362 AAAGTGATAC
586372 AATACAAAAATAG
1 AATACAAAAATAG
586385 AATACAAAAATA
1 AATACAAAAATA
586397 AGAACCGAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.04, T:0.16
Consensus pattern (13 bp):
AATACAAAAATAG
Left flanking sequence: Indices 585872 -- 586371
ATCCTTTTGTTTAATCCTATAAACACGAGAATTATGTATTTTTCTTTATTTTATGGCTTGGGACT
TACTCCTTGCTTTTTCGAATTCTATCAAGATTTCGCCCCTACAATTACTTATTCGTCGGGACAAT
AATCCAAGGGAAGGATTAATTTGAGGATGAGGAATTATCACACTGACTCGCTTTCTTCCTTCCCC
TAAGACAGAGAAACCCCCTTTTTTTTAAAGGAGTGTTGCAACAAATAAGGTATTTTGCCATTGAC
ATGAAAGCCGCCCCCCTAATTCTAATAAGTATAATTATTATTGGGAATTTTCAATTGAAAAAAAA
AAAATACATTTCTAGCTAATTACATTTCTAGCTAATATAGAATATATTTTTGACTCCCTTTAGAA
ATGAAAATGAATAATTTAATAATATAATAATAATAATAAATTAATAATTTTTTAAATAAAAAAAG
AAATACATAGAATTAGAATAAATGGAAAAGGAGTGAAAGTGATAC
Right flanking sequence: Indices 586397 -- 586896
AGAACCGAGTTTTTTGTTTTTGTAGTCTATCTAAAAGAAAAGTCTATCTAAAAAAAAATAGGAGA
TCATATGAAAAATGTAACCGATTCTTTCGTTTCCTTGGGTCACTGGCCATCCGCCGGGAGTTTCG
GGTTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGTGTAGTCCTTGGTGTATTGATC
TTTTTTGGAAAGGGAGTGTGTGCGAGTTGTTTATTTCAAGAATAGGCTGGATTTACCCAGTTGCA
CTTTTTTCATTCTAACTAGGAAAGAAAGGAGTGCATGATCCCGCGAATTACTTCTGAATAAATTT
AAAAATCATATTTAAGAACCATAGCATTTCGTAATTCATTGGTACATCGACTTTGATTCTCTATT
AACCAATAATCTGGGACCATTAACATGGTTAAGGCCAAAGCGTTTGAAGTTCAGATGCAGCAGGG
TACTCTTTCTACTACGTATGTTAATAAATACAGAAATATTTTCAA
Found at i:586454 original size:17 final size:17
Alignment explanation
Indices: 586420--586454 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
586410 TTGTTTTTGT
*
586420 AGTCTATCTAAAAGAAA
1 AGTCTATCTAAAAAAAA
586437 AGTCTATCTAAAAAAAA
1 AGTCTATCTAAAAAAAA
586454 A
1 A
586455 TAGGAGATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.57, C:0.11, G:0.09, T:0.23
Consensus pattern (17 bp):
AGTCTATCTAAAAAAAA
Left flanking sequence: Indices 585920 -- 586419
TTTTATGGCTTGGGACTTACTCCTTGCTTTTTCGAATTCTATCAAGATTTCGCCCCTACAATTAC
TTATTCGTCGGGACAATAATCCAAGGGAAGGATTAATTTGAGGATGAGGAATTATCACACTGACT
CGCTTTCTTCCTTCCCCTAAGACAGAGAAACCCCCTTTTTTTTAAAGGAGTGTTGCAACAAATAA
GGTATTTTGCCATTGACATGAAAGCCGCCCCCCTAATTCTAATAAGTATAATTATTATTGGGAAT
TTTCAATTGAAAAAAAAAAAATACATTTCTAGCTAATTACATTTCTAGCTAATATAGAATATATT
TTTGACTCCCTTTAGAAATGAAAATGAATAATTTAATAATATAATAATAATAATAAATTAATAAT
TTTTTAAATAAAAAAAGAAATACATAGAATTAGAATAAATGGAAAAGGAGTGAAAGTGATACAAT
ACAAAAATAGAATACAAAAATAAGAACCGAGTTTTTTGTTTTTGT
Right flanking sequence: Indices 586455 -- 586954
TAGGAGATCATATGAAAAATGTAACCGATTCTTTCGTTTCCTTGGGTCACTGGCCATCCGCCGGG
AGTTTCGGGTTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGTGTAGTCCTTGGTGT
ATTGATCTTTTTTGGAAAGGGAGTGTGTGCGAGTTGTTTATTTCAAGAATAGGCTGGATTTACCC
AGTTGCACTTTTTTCATTCTAACTAGGAAAGAAAGGAGTGCATGATCCCGCGAATTACTTCTGAA
TAAATTTAAAAATCATATTTAAGAACCATAGCATTTCGTAATTCATTGGTACATCGACTTTGATT
CTCTATTAACCAATAATCTGGGACCATTAACATGGTTAAGGCCAAAGCGTTTGAAGTTCAGATGC
AGCAGGGTACTCTTTCTACTACGTATGTTAATAAATACAGAAATATTTTCAAAACAAATAGTTGA
AAATGTTTTTTCGATATAAAACACTCATGTCGATAAAACGATTTG
Found at i:587150 original size:15 final size:15
Alignment explanation
Indices: 587113--587166 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
587103 TATATATAAA
*
587113 TATTTATTTTTAT-T
1 TATTTATTTATATAT
*
587127 CTATGTATTTATATAT
1 -TATTTATTTATATAT
*
587143 TATTTATTTA-GTAT
1 TATTTATTTATATAT
587157 TATTTATTTA
1 TATTTATTTA
587167 GTAAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 13 0.38
15 20 0.59
16 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (15 bp):
TATTTATTTATATAT
Left flanking sequence: Indices 586613 -- 587112
GCGAGTTGTTTATTTCAAGAATAGGCTGGATTTACCCAGTTGCACTTTTTTCATTCTAACTAGGA
AAGAAAGGAGTGCATGATCCCGCGAATTACTTCTGAATAAATTTAAAAATCATATTTAAGAACCA
TAGCATTTCGTAATTCATTGGTACATCGACTTTGATTCTCTATTAACCAATAATCTGGGACCATT
AACATGGTTAAGGCCAAAGCGTTTGAAGTTCAGATGCAGCAGGGTACTCTTTCTACTACGTATGT
TAATAAATACAGAAATATTTTCAAAACAAATAGTTGAAAATGTTTTTTCGATATAAAACACTCAT
GTCGATAAAACGATTTGAGCCCCTTTTTCCAATGCTGAATCGATGACCTATGTATAAAGTGAAAA
GAATTCTTTGAATTTGAAGAAAAAAAAGAAACAACTTTGCTGACAAATTAAAATTATACAATACC
ATTATAAGTACAATTACAATTATACAATTATAAATTATATATAAA
Right flanking sequence: Indices 587167 -- 587666
GTAAAATTTATTATACTTTTTTAGTTTTTTGATATATTTTCTATTTTGGTCAGAAGAATCCTCCG
AATATTCTGGTCTTGGATTAGTGATCCGTTTCAATATTTTGGAATATGAATAGAGAAGAGAGGGA
GAAGGTAAGCTCATTTCATTAGAAAAAAAAAACATATGGGAATTAATTCCCAATAAATAATAAAT
AATTGAGCGTGAGAGCCAAATGAATCGAAAGATTCATATTTGGTTCGGGAAGGGATCATGGAATT
TTTGAAATAAAAAAAAAAATGAAATGTAAAGATAATCTACTTTCATTAAGTGATTTATTAGATAA
TCGAAAAGAGAGGATTTTGAATACTATTCGAAATTCAGAAGAACTACGCGGGGGGGCTATTGAAC
AGCTGGAAAAGGCCCGGGCCCGCTTACGCAAGGTGGAAATGGAGGCAGATCAGTTTCGAGTGAAT
GGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCA
Found at i:587159 original size:14 final size:14
Alignment explanation
Indices: 587140--587169 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
587130 TGTATTTATA
587140 TATTATTTATTTAG
1 TATTATTTATTTAG
587154 TATTATTTATTTAG
1 TATTATTTATTTAG
587168 TA
1 TA
587170 AAATTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (14 bp):
TATTATTTATTTAG
Left flanking sequence: Indices 586640 -- 587139
GGATTTACCCAGTTGCACTTTTTTCATTCTAACTAGGAAAGAAAGGAGTGCATGATCCCGCGAAT
TACTTCTGAATAAATTTAAAAATCATATTTAAGAACCATAGCATTTCGTAATTCATTGGTACATC
GACTTTGATTCTCTATTAACCAATAATCTGGGACCATTAACATGGTTAAGGCCAAAGCGTTTGAA
GTTCAGATGCAGCAGGGTACTCTTTCTACTACGTATGTTAATAAATACAGAAATATTTTCAAAAC
AAATAGTTGAAAATGTTTTTTCGATATAAAACACTCATGTCGATAAAACGATTTGAGCCCCTTTT
TCCAATGCTGAATCGATGACCTATGTATAAAGTGAAAAGAATTCTTTGAATTTGAAGAAAAAAAA
GAAACAACTTTGCTGACAAATTAAAATTATACAATACCATTATAAGTACAATTACAATTATACAA
TTATAAATTATATATAAATATTTATTTTTATTCTATGTATTTATA
Right flanking sequence: Indices 587170 -- 587669
AAATTTATTATACTTTTTTAGTTTTTTGATATATTTTCTATTTTGGTCAGAAGAATCCTCCGAAT
ATTCTGGTCTTGGATTAGTGATCCGTTTCAATATTTTGGAATATGAATAGAGAAGAGAGGGAGAA
GGTAAGCTCATTTCATTAGAAAAAAAAAACATATGGGAATTAATTCCCAATAAATAATAAATAAT
TGAGCGTGAGAGCCAAATGAATCGAAAGATTCATATTTGGTTCGGGAAGGGATCATGGAATTTTT
GAAATAAAAAAAAAAATGAAATGTAAAGATAATCTACTTTCATTAAGTGATTTATTAGATAATCG
AAAAGAGAGGATTTTGAATACTATTCGAAATTCAGAAGAACTACGCGGGGGGGCTATTGAACAGC
TGGAAAAGGCCCGGGCCCGCTTACGCAAGGTGGAAATGGAGGCAGATCAGTTTCGAGTGAATGGA
TACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACT
Found at i:587175 original size:14 final size:14
Alignment explanation
Indices: 587144--587178 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
587134 TTTATATATT
**
587144 ATTTATTTAGTATT
1 ATTTATTTAGTAAA
587158 ATTTATTTAGTAAA
1 ATTTATTTAGTAAA
587172 ATTTATT
1 ATTTATT
587179 ATACTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (14 bp):
ATTTATTTAGTAAA
Left flanking sequence: Indices 586644 -- 587143
TTACCCAGTTGCACTTTTTTCATTCTAACTAGGAAAGAAAGGAGTGCATGATCCCGCGAATTACT
TCTGAATAAATTTAAAAATCATATTTAAGAACCATAGCATTTCGTAATTCATTGGTACATCGACT
TTGATTCTCTATTAACCAATAATCTGGGACCATTAACATGGTTAAGGCCAAAGCGTTTGAAGTTC
AGATGCAGCAGGGTACTCTTTCTACTACGTATGTTAATAAATACAGAAATATTTTCAAAACAAAT
AGTTGAAAATGTTTTTTCGATATAAAACACTCATGTCGATAAAACGATTTGAGCCCCTTTTTCCA
ATGCTGAATCGATGACCTATGTATAAAGTGAAAAGAATTCTTTGAATTTGAAGAAAAAAAAGAAA
CAACTTTGCTGACAAATTAAAATTATACAATACCATTATAAGTACAATTACAATTATACAATTAT
AAATTATATATAAATATTTATTTTTATTCTATGTATTTATATATT
Right flanking sequence: Indices 587179 -- 587678
ATACTTTTTTAGTTTTTTGATATATTTTCTATTTTGGTCAGAAGAATCCTCCGAATATTCTGGTC
TTGGATTAGTGATCCGTTTCAATATTTTGGAATATGAATAGAGAAGAGAGGGAGAAGGTAAGCTC
ATTTCATTAGAAAAAAAAAACATATGGGAATTAATTCCCAATAAATAATAAATAATTGAGCGTGA
GAGCCAAATGAATCGAAAGATTCATATTTGGTTCGGGAAGGGATCATGGAATTTTTGAAATAAAA
AAAAAAATGAAATGTAAAGATAATCTACTTTCATTAAGTGATTTATTAGATAATCGAAAAGAGAG
GATTTTGAATACTATTCGAAATTCAGAAGAACTACGCGGGGGGGCTATTGAACAGCTGGAAAAGG
CCCGGGCCCGCTTACGCAAGGTGGAAATGGAGGCAGATCAGTTTCGAGTGAATGGATACTCTGAG
ATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTATAAGATT
Found at i:587910 original size:121 final size:120
Alignment explanation
Indices: 587719--587959 Score: 473
Period size: 121 Copynumber: 2.0 Consensus size: 120
587709 ACCATTCATT
587719 TTGAACAACAAAGAGCGATTAATCAAGTCCGACAACGGGTTTTCCAGCAAGCTTTACAAGGAGCT
1 TTGAACAACAAAGAGCGATTAATCAAGTCCGACAACGGGTTTTCCAGCAAGCTTTACAAGGAGCT
587784 CTAGGAACTTTGAATAGTTCCTTGAACAACGAGTTACATTTACGTACCATTAGCG
66 CTAGGAACTTTGAATAGTTCCTTGAACAACGAGTTACATTTACGTACCATTAGCG
587839 NTTGAACAACAAAGAGCGATTAATCAAGTCCGACAACGGGTTTTCCAGCAAGCTTTACAAGGAGC
1 -TTGAACAACAAAGAGCGATTAATCAAGTCCGACAACGGGTTTTCCAGCAAGCTTTACAAGGAGC
587904 TCTAGGAACTTTGAATAGTTCCTTGAACAACGAGTTACATTTACGTACCATTAGCG
65 TCTAGGAACTTTGAATAGTTCCTTGAACAACGAGTTACATTTACGTACCATTAGCG
587960 CTAATATTGG
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 120 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (120 bp):
TTGAACAACAAAGAGCGATTAATCAAGTCCGACAACGGGTTTTCCAGCAAGCTTTACAAGGAGCT
CTAGGAACTTTGAATAGTTCCTTGAACAACGAGTTACATTTACGTACCATTAGCG
Left flanking sequence: Indices 587219 -- 587718
GAAGAATCCTCCGAATATTCTGGTCTTGGATTAGTGATCCGTTTCAATATTTTGGAATATGAATA
GAGAAGAGAGGGAGAAGGTAAGCTCATTTCATTAGAAAAAAAAAACATATGGGAATTAATTCCCA
ATAAATAATAAATAATTGAGCGTGAGAGCCAAATGAATCGAAAGATTCATATTTGGTTCGGGAAG
GGATCATGGAATTTTTGAAATAAAAAAAAAAATGAAATGTAAAGATAATCTACTTTCATTAAGTG
ATTTATTAGATAATCGAAAAGAGAGGATTTTGAATACTATTCGAAATTCAGAAGAACTACGCGGG
GGGGCTATTGAACAGCTGGAAAAGGCCCGGGCCCGCTTACGCAAGGTGGAAATGGAGGCAGATCA
GTTTCGAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTATA
AGATTTTGGAACAATTAGAAAATTACAAAAATGAAACCATTCATT
Right flanking sequence: Indices 587960 -- 588459
CTAATATTGGCCTGTTTGGGGGGATGAAAGAAATAACCGATTAGTCCTTTTTTTTACCTTTTTAC
TGTAGGCATTATTTTTTCTTCCAAAAAAATTAGGAAATACCAATGGTAACTATTAGAGCCGACGA
AATTAGTAATATTATCCGCGACCGTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATACAG
GTACCGTACTTCAAGTGGGCGACGGCATTGCTCGTATTCATGGTCTTGATGAAGTAATGGCAGGC
GAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCCCTGAATTTGGAATCAAATAATGTCGG
TGTTGTATTAATGGGTGACGGTTTGATGATACAAGAGGGAAGTTCTGTAAAAGCAACAGGAAAAA
TTGCTCAGATACCGGTGAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAGCCTATT
GACGGTCGGGGTGAAATTTCAGCTTCTGAATCTCGGTTAATTGAA
Found at i:589992 original size:19 final size:19
Alignment explanation
Indices: 589970--590026 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
589960 AATTTTAATT
589970 AATTCAATGAATTAATTAA
1 AATTCAATGAATTAATTAA
*
589989 AATTC-A--AA-T-AGT--
1 AATTCAATGAATTAATTAA
590001 AATTCAATGAATTAATTAA
1 AATTCAATGAATTAATTAA
590020 AATTCAA
1 AATTCAA
590027 ATAGATAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 14
0.64 0.04 0.31
Matches are distributed among these distances:
12 5 0.17
13 1 0.03
14 2 0.07
15 3 0.10
16 3 0.10
17 2 0.07
18 1 0.03
19 12 0.41
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (19 bp):
AATTCAATGAATTAATTAA
Left flanking sequence: Indices 589470 -- 589969
TAAACCTCAGTTCCAAGAAATCATATCTTCCACCAAGACATTCACTGAGGAAGCGGAAACACTTT
TGAAAGACGCTATTCAGGAACAAATGGAACGTTTTCAACTTCAGGAACAATTTTAAATTAAATAG
AAAATTAGAAATAAAATTATAATTATTTAATTATAATTAATGTAAAACATAATAAAAAATAGAAT
ATTAAGATATAATAAAATAAAAAATTATAAATTTTAATATTTTATATATTAAAATTCAATACGGG
ATATATGTATATATATGTATACATATATGGAAATATATTCAAAATTGCGTCCAATAGGATTTGAA
CCTATACCAAAGGTTTAGAAGACCTCTGTCCTATCCATTAGACAATGGACGCTTTTCATTAAGAT
TTTGTTACATTTTGTTTTCTCTTGTTCGTTTTTTTCTTTTCTCTTGTTTGGAAAAACTAAAGAGC
ATTTGAAAAAATTTTAGGAATTGCGTATTTATTTGAATTTTAATT
Right flanking sequence: Indices 590027 -- 590526
ATAGATAGAATTAGAATATGGAGCGGGTAGCGGGAATCGAACCCGCATCGTTAGCTTGGAAGGCT
AAGGGTTATAGTCGACGTTGATTCATTATTTTTAACGTCTCTAATTCAAAACCGAACATGAAATT
TTTGTTTCATTCGGCTCCTTTACGGAAGATGGATAAATTCAAAAAAAAAAGAAAGAAATAGAAAA
TAAAAAAAAATATAAATAAAAAAGGCGGGAACGAAATTGAAATTCGGCCCATAACATCTATGTTA
GCTTTTCTGTCTGAATCCATTCAAAAAATTCGCTTTCTAGATGATCCTTCTAGAAGAGTGGGATT
ATAATAATTTTTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAAAATCCTTAGGAAAAGCATTG
TGTTTCCACCGAGCTAAAACAAGATGTAAATGTCTCTAGTAAACCAAAGTTATTGTTTAATAGCT
ATCTTGCTTCAATCTATCCTATCAAAAAAAATTGAAGATTTAGTT
Found at i:590004 original size:31 final size:31
Alignment explanation
Indices: 589969--590030 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
589959 GAATTTTAAT
589969 TAATTCAATGAATTAATTAAAATTCAAATAG
1 TAATTCAATGAATTAATTAAAATTCAAATAG
590000 TAATTCAATGAATTAATTAAAATTCAAATAG
1 TAATTCAATGAATTAATTAAAATTCAAATAG
590031 ATAGAATTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (31 bp):
TAATTCAATGAATTAATTAAAATTCAAATAG
Left flanking sequence: Indices 589469 -- 589968
ATAAACCTCAGTTCCAAGAAATCATATCTTCCACCAAGACATTCACTGAGGAAGCGGAAACACTT
TTGAAAGACGCTATTCAGGAACAAATGGAACGTTTTCAACTTCAGGAACAATTTTAAATTAAATA
GAAAATTAGAAATAAAATTATAATTATTTAATTATAATTAATGTAAAACATAATAAAAAATAGAA
TATTAAGATATAATAAAATAAAAAATTATAAATTTTAATATTTTATATATTAAAATTCAATACGG
GATATATGTATATATATGTATACATATATGGAAATATATTCAAAATTGCGTCCAATAGGATTTGA
ACCTATACCAAAGGTTTAGAAGACCTCTGTCCTATCCATTAGACAATGGACGCTTTTCATTAAGA
TTTTGTTACATTTTGTTTTCTCTTGTTCGTTTTTTTCTTTTCTCTTGTTTGGAAAAACTAAAGAG
CATTTGAAAAAATTTTAGGAATTGCGTATTTATTTGAATTTTAAT
Right flanking sequence: Indices 590031 -- 590530
ATAGAATTAGAATATGGAGCGGGTAGCGGGAATCGAACCCGCATCGTTAGCTTGGAAGGCTAAGG
GTTATAGTCGACGTTGATTCATTATTTTTAACGTCTCTAATTCAAAACCGAACATGAAATTTTTG
TTTCATTCGGCTCCTTTACGGAAGATGGATAAATTCAAAAAAAAAAGAAAGAAATAGAAAATAAA
AAAAAATATAAATAAAAAAGGCGGGAACGAAATTGAAATTCGGCCCATAACATCTATGTTAGCTT
TTCTGTCTGAATCCATTCAAAAAATTCGCTTTCTAGATGATCCTTCTAGAAGAGTGGGATTATAA
TAATTTTTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAAAATCCTTAGGAAAAGCATTGTGTT
TCCACCGAGCTAAAACAAGATGTAAATGTCTCTAGTAAACCAAAGTTATTGTTTAATAGCTATCT
TGCTTCAATCTATCCTATCAAAAAAAATTGAAGATTTAGTTACGA
Found at i:591437 original size:21 final size:21
Alignment explanation
Indices: 591411--591500 Score: 180
Period size: 21 Copynumber: 4.3 Consensus size: 21
591401 GGAATTACTG
591411 ATAAAAGTTGTATATATCTAT
1 ATAAAAGTTGTATATATCTAT
591432 ATAAAAGTTGTATATATCTAT
1 ATAAAAGTTGTATATATCTAT
591453 ATAAAAGTTGTATATATCTAT
1 ATAAAAGTTGTATATATCTAT
591474 ATAAAAGTTGTATATATCTAT
1 ATAAAAGTTGTATATATCTAT
591495 ATAAAA
1 ATAAAA
591501 AATTTTAAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (21 bp):
ATAAAAGTTGTATATATCTAT
Left flanking sequence: Indices 590911 -- 591410
GGGCGAAATCAAGATCAAGATAAGATCACAAGATAGGAGCATAAAAATCCTGAAAATTAGAGCCC
TGTCACCTTTTGTCAGAAGACTTGATAAAATTTGGACAAGATTAGTTATTTCATTTAAATAACTA
AAAAGAAAGAGGAAGACAAGAAAGAATAGAAATGATATTTGGATTCTATATCATAGGAACGGAAA
TAGTGTTTTTTCTGCTTCTGATTGTTGATTCAATCCAATAACAAGATTTTTTTGTTACAACAAGT
CGGATCGCAGAATTGTAGAAAAAAAATGATTTATTTGAGTTGAAAAAAAAAAGAGCCCGGCCGGG
GACTGACCTGACCGGGCCGTGGAAATTGGAAATAAAAAAAGTCCCTTTTGAGCAAAATTAAAGCG
ATATTCTTTCTTTTTTTATTTGAGATATACCTTTAGAGTCCTTCTTTTATTTCTATATAGAATTT
TATATTATAGAATATAAACGATATAGAATATAAATGGAATTACTG
Right flanking sequence: Indices 591501 -- 592000
AATTTTAAAATCTATATATCTATAGATTACTAATACTCTATATAAATTAATAATAATTATATAAA
TTAATAATAATTTATATAAAAAATTATATAAAAAATCAAAATAAAGGGCTTTTTTCAAGCATTTC
TTTTTGTGTGCTGAACTGTAACATAGTAATTTTCTTTTCTCAATTAGGAGAGATGGCTGAGTGGA
CTAAAGCGTCGGATTGCTAATCCGTTGTGCGAGTATTCGTACCGAGGGTTCGAATCCCTCTCTTT
CCGTTTCGGTTTTTGCCAGTAGAATAGACGAAATCCTATTCTAAAACTAAAAATGAAGCAAGGAA
CCCCCCTTTTTTATTCTTCGCGTCCAGGATTACGTCCCGGATCATTGGATAGGAATCCGAAGATG
AAGAGAGAAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTAAGAGTAAGCATTACGCAATC
TCCAAGATCGTTTTTTTTGGAAAAAGAAGAGAATAGATTCTCCGT
Found at i:591514 original size:42 final size:42
Alignment explanation
Indices: 591411--591518 Score: 155
Period size: 42 Copynumber: 2.6 Consensus size: 42
591401 GGAATTACTG
* *
591411 ATAAAAGTTGTATATATCTATATAAAAGTTGTATATATCTAT
1 ATAAAAATTGTATAAATCTATATAAAAGTTGTATATATCTAT
* *
591453 ATAAAAGTTGTATATATCTATATAAAAGTTGTATATATCTAT
1 ATAAAAATTGTATAAATCTATATAAAAGTTGTATATATCTAT
*
591495 ATAAAAAATTTTA-AAATCTATATA
1 AT-AAAAATTGTATAAATCTATATA
591519 TCTATAGATT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
42 54 0.87
43 8 0.13
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (42 bp):
ATAAAAATTGTATAAATCTATATAAAAGTTGTATATATCTAT
Left flanking sequence: Indices 590911 -- 591410
GGGCGAAATCAAGATCAAGATAAGATCACAAGATAGGAGCATAAAAATCCTGAAAATTAGAGCCC
TGTCACCTTTTGTCAGAAGACTTGATAAAATTTGGACAAGATTAGTTATTTCATTTAAATAACTA
AAAAGAAAGAGGAAGACAAGAAAGAATAGAAATGATATTTGGATTCTATATCATAGGAACGGAAA
TAGTGTTTTTTCTGCTTCTGATTGTTGATTCAATCCAATAACAAGATTTTTTTGTTACAACAAGT
CGGATCGCAGAATTGTAGAAAAAAAATGATTTATTTGAGTTGAAAAAAAAAAGAGCCCGGCCGGG
GACTGACCTGACCGGGCCGTGGAAATTGGAAATAAAAAAAGTCCCTTTTGAGCAAAATTAAAGCG
ATATTCTTTCTTTTTTTATTTGAGATATACCTTTAGAGTCCTTCTTTTATTTCTATATAGAATTT
TATATTATAGAATATAAACGATATAGAATATAAATGGAATTACTG
Right flanking sequence: Indices 591519 -- 592018
TCTATAGATTACTAATACTCTATATAAATTAATAATAATTATATAAATTAATAATAATTTATATA
AAAAATTATATAAAAAATCAAAATAAAGGGCTTTTTTCAAGCATTTCTTTTTGTGTGCTGAACTG
TAACATAGTAATTTTCTTTTCTCAATTAGGAGAGATGGCTGAGTGGACTAAAGCGTCGGATTGCT
AATCCGTTGTGCGAGTATTCGTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCGGTTTTTGCCA
GTAGAATAGACGAAATCCTATTCTAAAACTAAAAATGAAGCAAGGAACCCCCCTTTTTTATTCTT
CGCGTCCAGGATTACGTCCCGGATCATTGGATAGGAATCCGAAGATGAAGAGAGAAACAAAGAAT
ATCACTACGGTGTAAACAAAGAGTTTAAGAGTAAGCATTACGCAATCTCCAAGATCGTTTTTTTT
GGAAAAAGAAGAGAATAGATTCTCCGTTTTATACCACATATTTTG
Found at i:591563 original size:19 final size:20
Alignment explanation
Indices: 591539--591585 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
591529 ACTAATACTC
591539 TATATAAATTAATAATAA-T
1 TATATAAATTAATAATAATT
591558 TATATAAATTAATAATAATT
1 TATATAAATTAATAATAATT
591578 TATATAAA
1 TATATAAA
591586 AAATTATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TATATAAATTAATAATAATT
Left flanking sequence: Indices 591039 -- 591538
TAAAAAGAAAGAGGAAGACAAGAAAGAATAGAAATGATATTTGGATTCTATATCATAGGAACGGA
AATAGTGTTTTTTCTGCTTCTGATTGTTGATTCAATCCAATAACAAGATTTTTTTGTTACAACAA
GTCGGATCGCAGAATTGTAGAAAAAAAATGATTTATTTGAGTTGAAAAAAAAAAGAGCCCGGCCG
GGGACTGACCTGACCGGGCCGTGGAAATTGGAAATAAAAAAAGTCCCTTTTGAGCAAAATTAAAG
CGATATTCTTTCTTTTTTTATTTGAGATATACCTTTAGAGTCCTTCTTTTATTTCTATATAGAAT
TTTATATTATAGAATATAAACGATATAGAATATAAATGGAATTACTGATAAAAGTTGTATATATC
TATATAAAAGTTGTATATATCTATATAAAAGTTGTATATATCTATATAAAAGTTGTATATATCTA
TATAAAAAATTTTAAAATCTATATATCTATAGATTACTAATACTC
Right flanking sequence: Indices 591586 -- 592085
AAATTATATAAAAAATCAAAATAAAGGGCTTTTTTCAAGCATTTCTTTTTGTGTGCTGAACTGTA
ACATAGTAATTTTCTTTTCTCAATTAGGAGAGATGGCTGAGTGGACTAAAGCGTCGGATTGCTAA
TCCGTTGTGCGAGTATTCGTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCGGTTTTTGCCAGT
AGAATAGACGAAATCCTATTCTAAAACTAAAAATGAAGCAAGGAACCCCCCTTTTTTATTCTTCG
CGTCCAGGATTACGTCCCGGATCATTGGATAGGAATCCGAAGATGAAGAGAGAAACAAAGAATAT
CACTACGGTGTAAACAAAGAGTTTAAGAGTAAGCATTACGCAATCTCCAAGATCGTTTTTTTTGG
AAAAAGAAGAGAATAGATTCTCCGTTTTATACCACATATTTTGACACCAAGAAAAGAAAGAAAGC
GATTTCTAGAAATTCTAGAAATCGAAAAGAATTTTCAGAAATTCA
Found at i:591592 original size:12 final size:12
Alignment explanation
Indices: 591563--591601 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
591553 ATAATTATAT
*
591563 AAATTA-ATAAT
1 AAATTATATAAA
*
591574 AATTTATATAAA
1 AAATTATATAAA
591586 AAATTATATAAA
1 AAATTATATAAA
591598 AAAT
1 AAAT
591602 CAAAATAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 5 0.21
12 19 0.79
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAATTATATAAA
Left flanking sequence: Indices 591063 -- 591562
AGAATAGAAATGATATTTGGATTCTATATCATAGGAACGGAAATAGTGTTTTTTCTGCTTCTGAT
TGTTGATTCAATCCAATAACAAGATTTTTTTGTTACAACAAGTCGGATCGCAGAATTGTAGAAAA
AAAATGATTTATTTGAGTTGAAAAAAAAAAGAGCCCGGCCGGGGACTGACCTGACCGGGCCGTGG
AAATTGGAAATAAAAAAAGTCCCTTTTGAGCAAAATTAAAGCGATATTCTTTCTTTTTTTATTTG
AGATATACCTTTAGAGTCCTTCTTTTATTTCTATATAGAATTTTATATTATAGAATATAAACGAT
ATAGAATATAAATGGAATTACTGATAAAAGTTGTATATATCTATATAAAAGTTGTATATATCTAT
ATAAAAGTTGTATATATCTATATAAAAGTTGTATATATCTATATAAAAAATTTTAAAATCTATAT
ATCTATAGATTACTAATACTCTATATAAATTAATAATAATTATAT
Right flanking sequence: Indices 591602 -- 592101
CAAAATAAAGGGCTTTTTTCAAGCATTTCTTTTTGTGTGCTGAACTGTAACATAGTAATTTTCTT
TTCTCAATTAGGAGAGATGGCTGAGTGGACTAAAGCGTCGGATTGCTAATCCGTTGTGCGAGTAT
TCGTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCGGTTTTTGCCAGTAGAATAGACGAAATCC
TATTCTAAAACTAAAAATGAAGCAAGGAACCCCCCTTTTTTATTCTTCGCGTCCAGGATTACGTC
CCGGATCATTGGATAGGAATCCGAAGATGAAGAGAGAAACAAAGAATATCACTACGGTGTAAACA
AAGAGTTTAAGAGTAAGCATTACGCAATCTCCAAGATCGTTTTTTTTGGAAAAAGAAGAGAATAG
ATTCTCCGTTTTATACCACATATTTTGACACCAAGAAAAGAAAGAAAGCGATTTCTAGAAATTCT
AGAAATCGAAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTG
Found at i:592272 original size:14 final size:14
Alignment explanation
Indices: 592234--592264 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
592224 TATCAGGGCT
592234 ATCCAAGAATTTCA
1 ATCCAAGAATTTCA
592248 ATCCAAGAATTTCA
1 ATCCAAGAATTTCA
592262 ATC
1 ATC
592265 TTTGAATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (14 bp):
ATCCAAGAATTTCA
Left flanking sequence: Indices 591734 -- 592233
GTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCGGTTTTTGCCAGTAGAATAGACGAAATCCTA
TTCTAAAACTAAAAATGAAGCAAGGAACCCCCCTTTTTTATTCTTCGCGTCCAGGATTACGTCCC
GGATCATTGGATAGGAATCCGAAGATGAAGAGAGAAACAAAGAATATCACTACGGTGTAAACAAA
GAGTTTAAGAGTAAGCATTACGCAATCTCCAAGATCGTTTTTTTTGGAAAAAGAAGAGAATAGAT
TCTCCGTTTTATACCACATATTTTGACACCAAGAAAAGAAAGAAAGCGATTTCTAGAAATTCTAG
AAATCGAAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTGAGTCTTTCATTACAAAAAAAAA
TTCTTCCGTACCAACAATTATATACTGCGGCCGACTCTAATCTAAATAGGGTTCCTCGGTGAAAA
AAGGGTCAGAATGAGGAAATGGGGTGATCCAGATTTATCAGGGCT
Right flanking sequence: Indices 592265 -- 592764
TTTGAATTGAGGGTTCGTTCATACTGTAAGACATACTGTAAGACTTATCTGATCTTTTCGATTGT
TAGAATTTTCTTTTTCTTGAATAAATCATGAATTTTTTTAGGACAATATTAAGGATCTCATCGAA
AACTTACAGCAGCTTGCCAAACAAAGGCTAAGAGAAAAAAGAGAAGAGGTATTACTGGCATAAAA
TCTACGATTGGATTCAAAAAAGCATAGGCCTCGGGCAATTTGGAGAATAAAAAACTACTCGAAAA
AAGGGCAGAATTAAAACAGAGACCGATCGAATTAAGGATATTAAGCATAACAAAATTTTGTTCTT
GGAAATTTTGTCATCATCTAATTGTTTTCGCATGGGTCCGTTCAACGATGCAAAATATCCCAATG
TGATAAAACAATCAATTAAAAAGGATCCTTTAATTCCAATTAAAATTCCAATTAAGAATTTATTG
GGTCCTTTAGGAACAGCCCCTCAAATTGCGAATTTTTATTCATCA
Found at i:592301 original size:12 final size:12
Alignment explanation
Indices: 592284--592308 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
592274 AGGGTTCGTT
592284 CATACTGTAAGA
1 CATACTGTAAGA
592296 CATACTGTAAGA
1 CATACTGTAAGA
592308 C
1 C
592309 TTATCTGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (12 bp):
CATACTGTAAGA
Left flanking sequence: Indices 591784 -- 592283
ATAGACGAAATCCTATTCTAAAACTAAAAATGAAGCAAGGAACCCCCCTTTTTTATTCTTCGCGT
CCAGGATTACGTCCCGGATCATTGGATAGGAATCCGAAGATGAAGAGAGAAACAAAGAATATCAC
TACGGTGTAAACAAAGAGTTTAAGAGTAAGCATTACGCAATCTCCAAGATCGTTTTTTTTGGAAA
AAGAAGAGAATAGATTCTCCGTTTTATACCACATATTTTGACACCAAGAAAAGAAAGAAAGCGAT
TTCTAGAAATTCTAGAAATCGAAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTGAGTCTTT
CATTACAAAAAAAAATTCTTCCGTACCAACAATTATATACTGCGGCCGACTCTAATCTAAATAGG
GTTCCTCGGTGAAAAAAGGGTCAGAATGAGGAAATGGGGTGATCCAGATTTATCAGGGCTATCCA
AGAATTTCAATCCAAGAATTTCAATCTTTGAATTGAGGGTTCGTT
Right flanking sequence: Indices 592309 -- 592808
TTATCTGATCTTTTCGATTGTTAGAATTTTCTTTTTCTTGAATAAATCATGAATTTTTTTAGGAC
AATATTAAGGATCTCATCGAAAACTTACAGCAGCTTGCCAAACAAAGGCTAAGAGAAAAAAGAGA
AGAGGTATTACTGGCATAAAATCTACGATTGGATTCAAAAAAGCATAGGCCTCGGGCAATTTGGA
GAATAAAAAACTACTCGAAAAAAGGGCAGAATTAAAACAGAGACCGATCGAATTAAGGATATTAA
GCATAACAAAATTTTGTTCTTGGAAATTTTGTCATCATCTAATTGTTTTCGCATGGGTCCGTTCA
ACGATGCAAAATATCCCAATGTGATAAAACAATCAATTAAAAAGGATCCTTTAATTCCAATTAAA
ATTCCAATTAAGAATTTATTGGGTCCTTTAGGAACAGCCCCTCAAATTGCGAATTTTTATTCATC
ATGATTATCATCCTAATTCTTGTGAAGAAACTTCCACAATAATTA
Found at i:592703 original size:12 final size:13
Alignment explanation
Indices: 592686--592714 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
592676 AGGATCCTTT
592686 AATTCCAATTAA-
1 AATTCCAATTAAG
592698 AATTCCAATTAAG
1 AATTCCAATTAAG
592711 AATT
1 AATT
592715 TATTGGGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.34
Consensus pattern (13 bp):
AATTCCAATTAAG
Left flanking sequence: Indices 592186 -- 592685
AAAAAGGGTCAGAATGAGGAAATGGGGTGATCCAGATTTATCAGGGCTATCCAAGAATTTCAATC
CAAGAATTTCAATCTTTGAATTGAGGGTTCGTTCATACTGTAAGACATACTGTAAGACTTATCTG
ATCTTTTCGATTGTTAGAATTTTCTTTTTCTTGAATAAATCATGAATTTTTTTAGGACAATATTA
AGGATCTCATCGAAAACTTACAGCAGCTTGCCAAACAAAGGCTAAGAGAAAAAAGAGAAGAGGTA
TTACTGGCATAAAATCTACGATTGGATTCAAAAAAGCATAGGCCTCGGGCAATTTGGAGAATAAA
AAACTACTCGAAAAAAGGGCAGAATTAAAACAGAGACCGATCGAATTAAGGATATTAAGCATAAC
AAAATTTTGTTCTTGGAAATTTTGTCATCATCTAATTGTTTTCGCATGGGTCCGTTCAACGATGC
AAAATATCCCAATGTGATAAAACAATCAATTAAAAAGGATCCTTT
Right flanking sequence: Indices 592715 -- 593214
TATTGGGTCCTTTAGGAACAGCCCCTCAAATTGCGAATTTTTATTCATCATGATTATCATCCTAA
TTCTTGTGAAGAAACTTCCACAATAATTAGCCTTGGTTGCATATGAGATTTCTATAGTGATGCTC
GTTAACCTATGGAAAAATACCTATAGGTGTCCTCCCCCGGGTCTTTGTCGTAAGTTGAATACTTC
CGTAATAGTTTATTTGACTTCCTTGATCAATCTATCCATGGTACTGGGATTTCCGTAAACTTGGA
TTCTGACCTGTATGCCGGTTCGGCAGTTGTGCTTTCTCTCTCTCTGCGATGACTTAGTTGGGCTT
TCCGGTTCCACTCTATTTGTGTCTTTGCCCCTCGGAGCGGTATCAAGTGCTATTGCACCTATTTT
TTTTCGTTGATTGTTAGATAGGCTGTTATCATGAAGAATGCGCGAGGGATAGCACCCCCCGGCTA
AAGGAGGCTACCCGTCATCATCTCATGTCCCCATTTACAACATTT
Found at i:593251 original size:19 final size:19
Alignment explanation
Indices: 593227--593264 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
593217 TACAGACCGA
593227 ATCCCAGAAACATAGGATT
1 ATCCCAGAAACATAGGATT
593246 ATCCCAGAAACATAGGATT
1 ATCCCAGAAACATAGGATT
593265 GGCGAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (19 bp):
ATCCCAGAAACATAGGATT
Left flanking sequence: Indices 592727 -- 593226
TAGGAACAGCCCCTCAAATTGCGAATTTTTATTCATCATGATTATCATCCTAATTCTTGTGAAGA
AACTTCCACAATAATTAGCCTTGGTTGCATATGAGATTTCTATAGTGATGCTCGTTAACCTATGG
AAAAATACCTATAGGTGTCCTCCCCCGGGTCTTTGTCGTAAGTTGAATACTTCCGTAATAGTTTA
TTTGACTTCCTTGATCAATCTATCCATGGTACTGGGATTTCCGTAAACTTGGATTCTGACCTGTA
TGCCGGTTCGGCAGTTGTGCTTTCTCTCTCTCTGCGATGACTTAGTTGGGCTTTCCGGTTCCACT
CTATTTGTGTCTTTGCCCCTCGGAGCGGTATCAAGTGCTATTGCACCTATTTTTTTTCGTTGATT
GTTAGATAGGCTGTTATCATGAAGAATGCGCGAGGGATAGCACCCCCCGGCTAAAGGAGGCTACC
CGTCATCATCTCATGTCCCCATTTACAACATTTTATACAGACCGA
Right flanking sequence: Indices 593265 -- 593764
GGCGAGTTGACGGAGCCCTCTAATTAGCCTATTTTTATTTTAGGTGTGCATGAGGTCTCATTCAA
TTGTGATGACCCTTATGCTTTCGTCTGACTCCCCCTCTGTGAGCAGATTGAGCCTTTTTCAGCTT
TTCGGCTCTTCGACGAATGCGCGGGGGAGTGGTGCTATGGAGAATAAGAGAGTGATAGGACTGAC
TTTCAGGCTTAGCTCTGCGAGCCTGCCTTACAGAATTGTTGGTCAATCCTCTGCACCAGACTCTA
CCTTTTCTGTGCCCGGAAAGTAAGTCTTTTCACATCCTCGAAAGTTCAGTTGTTGGGGAAAATAA
CTTGATTCTTTAAGATCCCGATCTTCTAGACTCGCAATGAATACCAAAGCCCCCTTCCGTCCCCT
ACCTTATTAAGTAAGTCAGCTCCTCCGTACTCTTCTAAGCTATGCAGCTCACCCCTGTATCGTGT
CGTTCGCCTGCTCTACTCGGTATACCTATACAAGTCACCTAATCA
Found at i:598173 original size:22 final size:22
Alignment explanation
Indices: 598145--598189 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
598135 TTTCGAGAAA
598145 GTGAGGCATACTACTTAATGGC
1 GTGAGGCATACTACTTAATGGC
598167 GTGAGGCATACTACTTAATGGC
1 GTGAGGCATACTACTTAATGGC
598189 G
1 G
598190 AACGAACGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (22 bp):
GTGAGGCATACTACTTAATGGC
Left flanking sequence: Indices 597645 -- 598144
CTCCTCGTGAACTTCGTAGCTTAACGTTCATCTAATGCCTCTGAAAAAGATTAGATCTCAGAATA
TGGGAGTAAGGCGTAGAAGGAGGATTCAAAGAAGAGAGTCCTGTTGCAAGTCCGGTCAAAGATCC
CTCTATATGAGATTTGATTCGTATCTGTGTTCAACCGGCAGCGCCGAAACGGCTTTTAGTCCGCC
TTACGTCTCAGTAGTACTTTGCACCGAAGCGAAGAGATAAGGCCAAGGTTTTCGTTTAACGTTTT
CCCGTCTTTCCCGGTTGGTTGGAGCTTTCATCTTAGGCTCCTCAATGTTGTGTTGTCTGACTCTG
GGCAATACCCGGAATATACCGATTTAGAAGGGGTTAAAAGCCATATCTGCTACCATCCCCAAGCC
TGAAGAAAGTATTAGGAATAGCTCTCCTTTCTAGTCAGCTGGGGCGAAAGGGCGAGTCTATGAGT
CGGTTTGGGAATGTGCTTCCTATTGCTAGCCTGTCTTTCGAGAAA
Right flanking sequence: Indices 598190 -- 598689
AACGAACGGGAATAGGTATAGACAGTGGAGTGGGCAAAAGGATCTAGCACACGAGCGATAGGGAA
TTGGGTGGGGCATAATAGCTAGGCCTTTCCTTGACTATGGGATTAGAATTTCTTCTTACCAACAT
CGACATGCAAACCATCAGGCAATCATTGAAGAACATGCAACAACCCATACGGCATTAAAAGCTAA
CCTCCCTCCCCTTAACTAGGGAAGTAGGCTCGTTAGACCCGTTAAGCCTTTCCTGAAACAGGAGT
TCAAGTAATCATCTACCTCTCTTGCAAGACAAAGATTTCATTGAGCCTAGCTCGCCCAAGAGTAC
TTTCCGTTGTTTAGGGACTGGTCTTCACCTATCTTTTGTTTTCCTTTCTATCTTTAGTTGTTGAT
GTGGGCGGAAGAGCTCTATCCCAAACTATTCCTGTGGGTTCTTCCTTCTGGTTCTCCCTTAATCC
AAGATAATGGGAAAGGTGATGGGAAAGATCCTTCGTTGAAGCCTG
Found at i:603683 original size:25 final size:25
Alignment explanation
Indices: 603649--603699 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
603639 AACAATCTCC
603649 GTATGAATAAACTGCACATCCCGAT
1 GTATGAATAAACTGCACATCCCGAT
603674 GTATGAATAAACTGCACATCCCGAT
1 GTATGAATAAACTGCACATCCCGAT
603699 G
1 G
603700 CTGCACAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (25 bp):
GTATGAATAAACTGCACATCCCGAT
Left flanking sequence: Indices 603149 -- 603648
ACTCCCGAGGTATCGACCACTATTCTAAATAGAGTAAAGTAAGGCGGAGAACTCTTGTTCAAGGA
GAAGGAGTCAATTCAGAATTGAAGAGAATCGGATGATGATCCGAACTTAAACAAGTAAGATTAAT
AACACGAGCTTCCGGAAACGCAAATTTAGCCTCTGAATTTTCCAGCACCCTATCAAGCCGTTCCC
GAAGAACCACTCTACCATGTTCTCGACGGACCCAGGTGAATTTAGACCCACCCGAACCCATATCT
AATAAATTACAAGCCTCAAAACGATCAACAAAGGACCGAGCCCTATTAGTCAAGAACCGAGTGCC
TCCACTTTTTTCATCTAAAGAAGCAATATCATTGAAATCACCCAGAACCACCCAAGCCAAATCAA
CATTCTGTGACATCTGGAAAAGTTCATTCCAAAAATTAGTTTTTAACGAGCAATGGGGTCTCACA
TAAACCCCCGTTAACAACCAAGAGGACTGATTCTCAACAATCTCC
Right flanking sequence: Indices 603700 -- 604199
CTGCACAACCAGATTGACCCTATGGTGATTCCAAAGGAGAATAATACCACCAGCGAGTCCATTAG
AATCCACCATATCAAAAGAAGTCAACCCCAAACGTAACATAAAGTTATTTGCAACAACTTTACTA
CTACACTTAGTTTCCAAAAGAAAGATAATATCGGGAGAATGAAGCTTAACCAGCTCCCTACAGTT
CCGCAAAGACTGCCTATTCGTCCCTCTACAATTCCACGAGACAACTTTAACCATTAAAAAATAGC
AGATTAAGAAGACCCCTGATCAGCAGGGGCGGCATCAACCTCAGCGACATTGGCTAACGGAGTAC
CCTCCACCACCGAAGGAGGCACACAAGCAGCTAAATTACCAGTCAGGAGTAATGTTTCAATAGGC
GCCAAATGATTAAGAACATCAAGTGGATCGATAATATTAGGCGCCTTGGGCATAGATTTGCCCCC
TCCCCTATCTTTCAGAGTCTTCCCAACACCTACTACATCCTTCTT
Found at i:604282 original size:21 final size:21
Alignment explanation
Indices: 604256--604297 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
604246 GGCCCTCCTG
604256 ACTTGAAAGCAGAAGTCTTTC
1 ACTTGAAAGCAGAAGTCTTTC
604277 ACTTGAAAGCAGAAGTCTTTC
1 ACTTGAAAGCAGAAGTCTTTC
604298 TAGGATGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (21 bp):
ACTTGAAAGCAGAAGTCTTTC
Left flanking sequence: Indices 603756 -- 604255
GTCCATTAGAATCCACCATATCAAAAGAAGTCAACCCCAAACGTAACATAAAGTTATTTGCAACA
ACTTTACTACTACACTTAGTTTCCAAAAGAAAGATAATATCGGGAGAATGAAGCTTAACCAGCTC
CCTACAGTTCCGCAAAGACTGCCTATTCGTCCCTCTACAATTCCACGAGACAACTTTAACCATTA
AAAAATAGCAGATTAAGAAGACCCCTGATCAGCAGGGGCGGCATCAACCTCAGCGACATTGGCTA
ACGGAGTACCCTCCACCACCGAAGGAGGCACACAAGCAGCTAAATTACCAGTCAGGAGTAATGTT
TCAATAGGCGCCAAATGATTAAGAACATCAAGTGGATCGATAATATTAGGCGCCTTGGGCATAGA
TTTGCCCCCTCCCCTATCTTTCAGAGTCTTCCCAACACCTACTACATCCTTCTTAGCACTATCAG
AAGTCACTTTCGAAATAGCCACATCCTTTATTTTAGGCCCTCCTG
Right flanking sequence: Indices 604298 -- 604797
TAGGATGCAGTCCTTGACTCTTCCCAACGCCTTCTTTGGGCTTAACTAAAGTAACGGAAGCACTA
GGCTTCGGCAGCCTACTATCAATGGGCTGCTCACCTTCACCTAAGTTGACAAGTCCATCCTCCAC
AGGCCCATTCTTCAATCCCGGCCCATCCTCCAAAGGCCCAGCATTTGAAACTCCCTCTTCAATAG
TCTTATCACTCTCGTCATCCAAAATCAAAGTATCCTCAACAAACTGATCATCCATAGTAGCATCC
CCATCTACTTGTTCGGCCTCCTCAAGATCTTCCGTAACAACCGGGCCCTTATCAACCTTCTTTTT
TGGCCGCCAAACCTTATCCTTCGAAGTCACTCCCTGAGACCACGCCTCAACATTCGCTTCCCTAA
CTTCACCAGCTTCCTGCGGCGTGTCACTATCTTCATAGAGCACATTGAATCTATTGGAAGAAGGA
CCATCACCACCATCCACCCTTTTACCCTCCTTATCAGCTGGATTC
Found at i:606192 original size:17 final size:17
Alignment explanation
Indices: 606170--606203 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
606160 CCTCTTCTCT
606170 CAACAGAAATAGACTTA
1 CAACAGAAATAGACTTA
606187 CAACAGAAATAGACTTA
1 CAACAGAAATAGACTTA
606204 GCCAATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (17 bp):
CAACAGAAATAGACTTA
Left flanking sequence: Indices 605670 -- 606169
CACCGGAGTTTCCTGAACCTCAATGGTCGAACCCCCCTCCGGATCCACTTTATTTGTACTCCGAT
CTAAATGATCTTTCTCTTCCGACGTTAGCGTCGTCTCCACAGCCATCTCATTCATCGTGCGCCGC
TCTCTTTTTTATTAATTTCTTTCTGTTGGGTGTGCTTATTCCCTTACTGCGCTTATTGGGTATAT
ACTTGAATCTCTAATGGCATCTGATGAATTTCCGGAGCTAAACCAATTACAAAAACCTATTCTAT
CGCTAAAGTAGTTTAAGCGAATCCGTAGTTTCTTGGTTTTGATAGAGACTAATCCGCTATTGAAG
GCAAGCTCTGAATCGTACTCCTTAGTACTAGTCCTTGGGGTGAGCTATCTATCTCAACCATCACC
TTTTCGATATCCATGAACAGGATCTTCTATATCCATGAACAGGATCGGGATTGATTATTGATTTT
CTTGGGGAAAGCGCAATAGTGAAAATAGAAAGAAACCTCTTCTCT
Right flanking sequence: Indices 606204 -- 606703
GCCAATTCACAAGGTAGAATCCGCACCCGAGCTTGAAGTTCTAGATTTCACATCCCTTGAATCTT
ATCTCGGGGGGTACATAGAAAGAAGTAGGAAGGGGAAAGCCCCATGAACGTAAGGAAGCGCAGAA
AGTCTATTGCCCTAGGGAGTGAGTAAGTTTCTCAAAAGAGATTGTTTAGGTTCTCCAGGGAACTT
GTCAAAGTCATTGGCCACTTCGACTGATAGACCTAAAATAGGATTCACTGTTGAGTTTCTTATTA
GAATCGCTTTCACGAAGCGTATCATGACTTGAGGTTGCTTTGGCTCGTACAGGAAATGAAGATTC
TGAGCCCCTAAAGCCCCTGTCTACTCGTTCTCAAAGAAAGCAGAAAGAAAGGAATAGAAAGAGTT
GAGTCAAACGGATATTCATTCTACGCAATTAGTACTTGTAAACACATTCTACGTCCATCGCGACC
TAGCTACATTTTAGAAAGACAGCTCTTTTGACAGCGAGAGTCTGA
Found at i:609197 original size:19 final size:19
Alignment explanation
Indices: 609173--609214 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
609163 CTGCGAAAGG
609173 AGAAAGAATTGAAGACGGT
1 AGAAAGAATTGAAGACGGT
609192 AGAAAGAATTGAAGACGGT
1 AGAAAGAATTGAAGACGGT
609211 AGAA
1 AGAA
609215 GGACCTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.50, C:0.05, G:0.31, T:0.14
Consensus pattern (19 bp):
AGAAAGAATTGAAGACGGT
Left flanking sequence: Indices 608673 -- 609172
CTTCCTATAGCTTGTTTAGAACCTTCCCATACTGATAATGAAATAGATCTAGCTCTAGTACTAGG
TCTACCCCTATTCTATAACCTAGAGCACAGGTACTATCTCCTTGAACACTGGTTTGTTGGTATCC
TAAAAAACAGGCTGGGCAGGTACTAAGAACCTTACGAGAGCACGCCTTCTTTATCTTTACGTTGG
AGTTTCATAAAGAAATATGCTTTGCCGCTACCATTGGCGGCTCAACTTCGTTCCTCCTTCTAACA
TAACAGGGCATTCGTGAACATCGGCAGTAGATGAATGGTGATCAAGAGACTGACTGACAGACCTT
ACCAATTTCTCAATGCCGGACCTGAATGTGAATGGCGAATGCCTTCAAGCAAGGAATAGGGGTAA
TCTTTTCAATTCTATCCCATAGGGACGTCAGCAAGGTAAGAAAGTAACTAGGTAGCTCTCACAGT
ACGTAAGGTTTATGAAAGCCTTCTCTTATCCTCCCCTGCGAAAGG
Right flanking sequence: Indices 609215 -- 609714
GGACCTCTTTGGCAATCTTCTTTTTAGGTAGTTAGGAGCGAAGGTAGTACGAGGCAGAGCAAAGA
CTAAGAGAGGGACATCAATACGTCAAGGCTCTAGTTTCACTCTTGCCAGGTGGGTTACTTTGACT
TGGGGAATCAGATTGATAGCTTTTGTTTTGAATGGGGCGAGGCTAAGGGTTCCGATAGAAAGCGA
TGCCTACTAGACTGGCTCGAATAAGCCTTGAAATAGTCTCATAGCTTCGTCACCTAGCTTAAGCT
ATTCTATCTTTTTTCATTCTGCCCCAATGTGACATTGTAAAGACTTTTTGGAGTGTCGCTAACCA
ACGATCCTTTTATCCCTCCAACACCAAGTGCCACCTCAACAGCTAGATTCTAAATCGTTAAGCCT
CGCAACCCTTTCCTTTGTATCGGACCTTTCCCGCTTTCCTTCCTTGGCTAGTTTCAAAAAGTTCC
ACTTTGCTTTGTTCATAGAATAAGTCATAAAGAAGTGACAATTAA
Found at i:612950 original size:30 final size:30
Alignment explanation
Indices: 612914--612971 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
612904 CTACAACTAG
612914 AATATTAAATGAACTGATTCTTTCTTTTAC
1 AATATTAAATGAACTGATTCTTTCTTTTAC
612944 AATATTAAATGAACTGATTCTTTCTTTT
1 AATATTAAATGAACTGATTCTTTCTTTT
612972 TTCATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (30 bp):
AATATTAAATGAACTGATTCTTTCTTTTAC
Left flanking sequence: Indices 612414 -- 612913
TAGACATCAGCTGTACAAGAACCCAAGGGTAAATATAAAAAGGTTAACTCCCGATGCTACGTCAA
AAGCATGAATTTTAGCTGTCGAATGAGACTACTAAATCTAAATGTAGGAATGAAAACTGGAAAAT
TCACTCAACTCATCAAGATGTCTTGGTGTCCGACCTTCCGGGTATGCGCGTAAGGGGTATCCTAA
CATGTCATAAATTAACGCATTGCCTATTGTAGTGCGTTTAACCTCACGTTCGTTTGGGAGTTCTC
ACGATGTGTAAAATCCGATCATCAGACCTATTTCAATGCACATTGTCTGACCTAAGATTTAGCGG
AGGAGACGAAGGAGATGAGCTGCGTAAGAGCTAACAGTACGAACTACTCTACTCACGAGAATCAG
TCTTTCAGCCAATACCAAACAAGACTAACCCGTTGGTGTGTGCGACTCCGCCATCTTTCTTCTCT
CTCCGAACAAAGGCTAGCCTGTACGCCTGTCGGTACTACAACTAG
Right flanking sequence: Indices 612972 -- 613471
TTCATATATTCATTCATGACTTCAGCAATGAGTGAATTACTTCTCCGTTCTTCTTCTTAATAGGG
ATTCTGGTCAACGGCGAATAGGAAGCATAATGGGTACTAGTTGCTTTAGGATGTAAACATCATCG
AAGAAGTCCATCGACTCAAAGTCCCCAACTACGAAAGCGCCTAGAAAAGGTAGCCCGGGAAGCAC
AGCACATGTGACCAAGGGTTGGTTCAATACCTAGTGTAAGAATTGTTACTCATTATGGCTTTCCT
CGTTCGGGACAAAGAGCAAAGTAGTCTTACAGTTGTCTGCCCTCATTCCCGAGTCGCATTAGCAC
AAGCCACGAGCGAGCTGCGGGTTCGCGATTTCCAAGTTTTCCTTATTATAAGTCAAAGCCCTAGA
GCACGGAACTAGAAATCCTAGAAGTCACTTGCACCTTTTCTTACCGGACGAGCTAACCAGCCGCT
CCTACCTTCCCTTACCGTTCGTGTGCCATTAAGACTAGATAATGG
Found at i:613495 original size:20 final size:20
Alignment explanation
Indices: 613470--613509 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
613460 ACTAGATAAT
613470 GGAAGAGATTGTAACCCTTG
1 GGAAGAGATTGTAACCCTTG
613490 GGAAGAGATTGTAACCCTTG
1 GGAAGAGATTGTAACCCTTG
613510 AACAGCTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (20 bp):
GGAAGAGATTGTAACCCTTG
Left flanking sequence: Indices 612970 -- 613469
TTTTCATATATTCATTCATGACTTCAGCAATGAGTGAATTACTTCTCCGTTCTTCTTCTTAATAG
GGATTCTGGTCAACGGCGAATAGGAAGCATAATGGGTACTAGTTGCTTTAGGATGTAAACATCAT
CGAAGAAGTCCATCGACTCAAAGTCCCCAACTACGAAAGCGCCTAGAAAAGGTAGCCCGGGAAGC
ACAGCACATGTGACCAAGGGTTGGTTCAATACCTAGTGTAAGAATTGTTACTCATTATGGCTTTC
CTCGTTCGGGACAAAGAGCAAAGTAGTCTTACAGTTGTCTGCCCTCATTCCCGAGTCGCATTAGC
ACAAGCCACGAGCGAGCTGCGGGTTCGCGATTTCCAAGTTTTCCTTATTATAAGTCAAAGCCCTA
GAGCACGGAACTAGAAATCCTAGAAGTCACTTGCACCTTTTCTTACCGGACGAGCTAACCAGCCG
CTCCTACCTTCCCTTACCGTTCGTGTGCCATTAAGACTAGATAAT
Right flanking sequence: Indices 613510 -- 614009
AACAGCTTCAAAGCGAGTTGAAAAAGGAATTGAGTCTTCTCTTACTTCGGGAATGAAATGAAGAA
AAGAAGGTGTAGATAAATAGCTGAGCTAAGTAGCATATGAACCTCCGACTCGAAGCTTCCCGTTT
GCCAGACCTATAGGATGACATTTCTCGTGTCAGTCAATCTATAGGATGACATTTCTCGTGTCAGT
CAATCCTGTCTCTCTGAGCTTATGAGCGCGTCTGCTACGCCTTTGCCCACTGCCAATTGGATTCC
AAGTTTGCTAGGTGGTTCTCTTTTAGCATCATGAGAAAGCTGGCAGTTGGATTTAAACGGTGGCA
AAGCTGCTAGTTTAAAATAGCCGTGAAGTCTAACACGAGATGTATGTCAGTTAAAAATATACCTA
TCTCATGGTTAGAAAGGGAATCGAACCCTTTGCATAGTCACTGCACTCTGCTCTCTGCACTCAGC
ACTCTTCAATCAGCAGATACTATGCTTGCCCCAATCGGCGTACCC
Found at i:613685 original size:31 final size:31
Alignment explanation
Indices: 613647--613709 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
613637 TTTGCCAGAC
613647 CTATAGGATGACATTTCTCGTGTCAGTCAAT
1 CTATAGGATGACATTTCTCGTGTCAGTCAAT
613678 CTATAGGATGACATTTCTCGTGTCAGTCAAT
1 CTATAGGATGACATTTCTCGTGTCAGTCAAT
613709 C
1 C
613710 CTGTCTCTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (31 bp):
CTATAGGATGACATTTCTCGTGTCAGTCAAT
Left flanking sequence: Indices 613147 -- 613646
AAAGGTAGCCCGGGAAGCACAGCACATGTGACCAAGGGTTGGTTCAATACCTAGTGTAAGAATTG
TTACTCATTATGGCTTTCCTCGTTCGGGACAAAGAGCAAAGTAGTCTTACAGTTGTCTGCCCTCA
TTCCCGAGTCGCATTAGCACAAGCCACGAGCGAGCTGCGGGTTCGCGATTTCCAAGTTTTCCTTA
TTATAAGTCAAAGCCCTAGAGCACGGAACTAGAAATCCTAGAAGTCACTTGCACCTTTTCTTACC
GGACGAGCTAACCAGCCGCTCCTACCTTCCCTTACCGTTCGTGTGCCATTAAGACTAGATAATGG
AAGAGATTGTAACCCTTGGGAAGAGATTGTAACCCTTGAACAGCTTCAAAGCGAGTTGAAAAAGG
AATTGAGTCTTCTCTTACTTCGGGAATGAAATGAAGAAAAGAAGGTGTAGATAAATAGCTGAGCT
AAGTAGCATATGAACCTCCGACTCGAAGCTTCCCGTTTGCCAGAC
Right flanking sequence: Indices 613710 -- 614209
CTGTCTCTCTGAGCTTATGAGCGCGTCTGCTACGCCTTTGCCCACTGCCAATTGGATTCCAAGTT
TGCTAGGTGGTTCTCTTTTAGCATCATGAGAAAGCTGGCAGTTGGATTTAAACGGTGGCAAAGCT
GCTAGTTTAAAATAGCCGTGAAGTCTAACACGAGATGTATGTCAGTTAAAAATATACCTATCTCA
TGGTTAGAAAGGGAATCGAACCCTTTGCATAGTCACTGCACTCTGCTCTCTGCACTCAGCACTCT
TCAATCAGCAGATACTATGCTTGCCCCAATCGGCGTACCCACCATATAAGAGAAGATCAGATAGT
GAGGTGAGATCTACGACCAGCCTTCATTCGAAAGCGCAGATCGTTGCTCTTTCTTTACTTAAGTC
CGAACTTTTGAAAGAAGAATCGTCGGAAATACCCACCACCTTCTGATAGCTACCACCTACGCATC
TACGATAACAAGATCGTAACCCAAGATAGCATAAGCAGGAAACCC
Found at i:619361 original size:72 final size:73
Alignment explanation
Indices: 619284--619440 Score: 180
Period size: 71 Copynumber: 2.2 Consensus size: 73
619274 TTGAAATACA
* * *
619284 AAAAGTTGTTACTCTAC-ATAGCGGAAAAACCTTAACAAGGAAATTCCACTCATAGAGCTCCTTG
1 AAAAGTTGTTACTCTACGATAGCGGAAAAACCTTAACAAGGAAATTCAACTCATAGAGAT-CATG
*
619348 AAAATG-TG
65 AAAAAGATG
* * * *
619356 AAAAGTT-TTA-T-TTCGTATAGTGGGAAAACCTTAACAAGGAAATTTAACTCATAGAGATCATG
1 AAAAGTTGTTACTCTACG-ATAGCGGAAAAACCTTAACAAGGAAATTCAACTCATAGAGATCATG
619418 AAAAAGATG
65 AAAAAGATG
*
619427 CAAAGTTGTTACTC
1 AAAAGTTGTTACTC
619441 ACCTAGGGTC
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
69 2 0.03
70 9 0.13
71 48 0.69
72 10 0.14
73 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (73 bp):
AAAAGTTGTTACTCTACGATAGCGGAAAAACCTTAACAAGGAAATTCAACTCATAGAGATCATGA
AAAAGATG
Left flanking sequence: Indices 618784 -- 619283
ACTATAGATAGGGATTAGGCATAACCGTATGAACGGTACTCGCCTTATGTCTATAGAAACCTTTA
GGTTGTTTTCGGATCTTTCTTCCTTTTCAAAATCCGCATTTACTGCTCTGCTCGAAGCAGAAGCC
CCAGACTGCCTACATTCAGTGCGTAGAGTCTCAAGCGAAAGCCTGTCGAGTGAAGGATTTTTGAG
AAAGACTAAAAGTAAAAGTAACCTGCAATCAAGACCTGATAACCGAGTGAAAGTCTTCTCCCTTC
ATCCAAGTTCACAGAAGAGAAATATCCTTTTAGCGCAGGATCCATATACGTCCGAACGAAAAGAA
TCAGTGCTTATTGAACATCCATCTGAATCTGTTAATGGATTCAGTTCCTGTTGTTTGATGAGACC
CGATTGACTTTTTACCTCTACGAGATCATGAAAAAAAGATAACTTTGCATCTTATATAGATAGAA
AAGTGCCTTATTACTTTTTCAGTAATAGATCGCCATTGAAATACA
Right flanking sequence: Indices 619441 -- 619940
ACCTAGGGTCGAAAGTTAATTATGCCTTTTTCACTCTATGATGGACATTGAAATGACAAAAGTTG
TTACTCATATAGGGGAAAAAGTATGTTTTTTTGTCCATTTTGAATTCTATTTCTTCCCTGAAAAG
TCAAAGTATCCAAAAAAGACGGGTTTTAACAACTTTTCAGATTTCGAATGACCCGTTAGGAAAGG
AAATGTCAAAGTAAGCATTTTTTCTTTGCAAACTTTGAATTCCATTTCTTCCCTAAAATGTCAAA
GTAAGCATTTTTCCCGGTGTTTTATCAAAGTTGACAATTGAGAATGATATTTAGGATTTCACTAT
TGGCTAGAATTTGAGTGATGCAGATATTACAACAAGAAGTTTACGATCTCATTCATTCATGTGAT
ACGCTTTCTTTCTCGAGACACCCTCAAAGCCTGCCAATCATGATGCTCTATGTTCGGACCCCGTT
GAGTAAGAAGCGAAGGGGGTTTATAGGTGTTAGTAATGCTTATCA
Found at i:620928 original size:18 final size:18
Alignment explanation
Indices: 620907--620942 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
620897 AGCTGTCAAT
620907 AATATCTGAGAGTTTTTG
1 AATATCTGAGAGTTTTTG
620925 AATATCTGAGAGTTTTTG
1 AATATCTGAGAGTTTTTG
620943 CAAGCATAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (18 bp):
AATATCTGAGAGTTTTTG
Left flanking sequence: Indices 620407 -- 620906
ATGAATCAATTTCCTTTTCAACTGCAACAGGCAACTTAGTAGTTTTCATGGTGTATATAGCAATA
GAACTCGTTACAGATTGAACTAAAAGAGCTCTGCCAGCAAGAGAGAATTGATTGGCCTTATTAGC
AGCTAATCTTTTTATTTACTTACTTAAGTAGATGGGCATATGTATGTTTATTTACTCTCTTTCTA
TGAAGAGGCACACCGAAATATAAGCCAAGATCAATAGAGTGACTCATATTTGTTGTCATAGCAAT
AGCATCAATAGTAGCAGATGTAAGATTTGCATAAGTAAAAAACTTATACTTCTGTAGATTTACGC
TTTCTCTAGATAAAGCACAAAATCGGTTTAAAGACTGAATCATGCATTGACTTTTCTGAACTGAG
GCTTCACCCATTAAAATGAAATGATCTGCAAAAAAGAAATGAGAGAAAGTCGGCCCTCTTCTGGA
TACAGTAAGTGGCTTCCAAACTCCATTGTTCACTGAGCTGTCAAT
Right flanking sequence: Indices 620943 -- 621442
CAAGCATAGGACAAATAAATAAGGTCTCAACGAGCCTTGTCTAAGTCCTCGGGCAGGCTTAAAAT
AAGATGTCCGCTCTCCCATAGCACATTTATCTCAGTGGAAGTCACACAGAACATAATTAAAGAAA
CCCGTGTAGAAGGTAGGCCTAAATACATAAGGACCCAACGTAAGAACTCCACAATCATAAGCCTT
TTCAAGATCTATTTTCATGAGCATTCCCCCATTCTTGCCTCGGTGAAACCATCCCCTGATTCGAT
TCTATTACTTGGGCTTTACCCTATTTGGTTGATAGGTATCTTTTGGTTTGGGATCCCCACTGGAA
TCAAAGTCTTTAGCATGTATTTTAATTAATATTTATTGATTTTCTTGAATTGGATTGAACTGTTG
TGCCCGAGCTGATTCTAATAATTGAATATATTCAAAAGTCCGAGCTTGCTAGCCTGGAGTCGGGA
AACTACGAAACAACTGCATGAAGGAACCGAAGGGTCTAGCGAATA
Found at i:625328 original size:22 final size:22
Alignment explanation
Indices: 625300--625343 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
625290 GGTGAATTGC
625300 CTATATAGCTTTGTCCCCTGCA
1 CTATATAGCTTTGTCCCCTGCA
625322 CTATATAGCTTTGTCCCCTGCA
1 CTATATAGCTTTGTCCCCTGCA
625344 GCTGCTAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.14, T:0.36
Consensus pattern (22 bp):
CTATATAGCTTTGTCCCCTGCA
Left flanking sequence: Indices 624800 -- 625299
CCATTTTTTATGATCTTTTCGTGGTTCAGTTACCTGATGAAACTACAAGGCGCTAGGGGAAATAG
GCGCATCACCGGTTAACCCCGAATCTAAGAATCCTCTAAGTTGGTGCCGAAGGTATTGGAATAGG
AGTCATTTTATCCGCTTCTTTTCCGAAGTGGTTTAATCTCATCCGTAGTTTTTTCTTGGGTGGAC
TGGGGATTTCTCATTGCAATACGCCCACATTCTAAATCGTATAAGAAGGAAAGGCACCTATTCAA
AGTCTTTTTTCACTAAACAAGCCCTTTAGAGTCTTTTGAGGAAACCTTCATTCAAGGAAGCTTAC
TTCAGTAATGACTAGTTATCTCCTTCTTCTCGGATGGGGAGAAAAAGTGGCATATAATGGATTAA
GGGATAAAGGGTCGGATTGAGAAAGAGAAAGGGTTGACTAGCTTTACTTTATACGCAAGTCCTTC
TTCACAAATTGGGGAAAGCCATGGGGTATGGAGAGGGTGAATTGC
Right flanking sequence: Indices 625344 -- 625843
GCTGCTAGTGAAAGAGTGGAAAGTGATTTACCGAGGATTAGGTCTAGGCCCTTTCCGGAGGTATC
TAATAACCTTGCTTATGCTCGCCACCGGCTCTACTATTTTACCATACACGGCATCGCCTGACAAG
AGGTAGGGCTACTCAATATGGCTTGGACCATGTCCATTTAAGGAAGGATCGCCCATACCCGCTCA
CCCTGACATCAATGATCCCTTCCACCCAATCAAAGAACCACTCGGAAAGAAAGAGGTCTCGCGGA
GCCTTTCGCCACTCCCTTCGCTAGACTCGATCCGTCAACCGTTCATTCTTATGAGAAAGAGAACT
TTCAGTCTTTCATGATAAGACTTTCAATAGACTCTCGCGCATCAAACTAATCCTAGTCCAGACTT
ATATCTCTTCGCTTATCAGCCAGCAGCTAACTATGTAAAACGTCCTCAAGTAATAAGTTGACGGT
TTGGATTGGGTGCAGAGATGGGGGCGTCCACTAGATAGGCGACCT
Found at i:627976 original size:19 final size:19
Alignment explanation
Indices: 627952--628007 Score: 112
Period size: 19 Copynumber: 2.9 Consensus size: 19
627942 GCAAATCAAG
627952 CCCATTCCGAGCCTTTAAA
1 CCCATTCCGAGCCTTTAAA
627971 CCCATTCCGAGCCTTTAAA
1 CCCATTCCGAGCCTTTAAA
627990 CCCATTCCGAGCCTTTAA
1 CCCATTCCGAGCCTTTAA
628008 GCCGCTTCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.25, C:0.38, G:0.11, T:0.27
Consensus pattern (19 bp):
CCCATTCCGAGCCTTTAAA
Left flanking sequence: Indices 627452 -- 627951
TCTCCTAAGCAAATCAGACATTATAGGTGCTGTTGGAACAGACTTCCAGGGCGGTTTACAGATCA
ACCCTTGAAAAAAAAAGGAGTCTTTCTTTGATCGTAGGTAACCATATCAGAATGAGTGACTTGGA
CACCCGCTCCAACTTCGGAATAAACTTCAGAATTGCTAAGAATAACGAAGTCGACTCCTGATCAC
GCATAGTATTGTACATCTTAACCCCCGATTGGCAAAGCAAAAGGTATGTCTCGAGCTATCAAAAA
AGATACCCAGCGAACTACCTTTCATTCTGACCGTGACAAAAGTTCTGTTTTTAGAGTTCAAATAG
GACTTTCGAATGTCTGTTATCAATTTATTGAAACTAGGCCAACGGGAATATTAAATTCTATCTTT
CTTTGTCCCGATGCTGTTTATAAGTTTGATTTTACCGTGAAAACTCTTCCATTTGACTGTCCCGA
TGATAGATTCCCTTTTCTCACTGTTATGAGTTCAAGCAAATCAAG
Right flanking sequence: Indices 628008 -- 628507
GCCGCTTCACCAGTAGCCAAATAGTGTATGTACCAGTGCACCAGCCATAGAACAAGCTAGTCGTC
CCGTTATCGCCGTAACACCCAGAGATTCGCATGTAGGCATCAGTAGACCGCTATTTCTTCACTTA
ACTAATCGACTCTCATTGCGACACTTCCCATGTCCCCAATGGTAGAGGACATTGATAAGAAATCT
GCCTTACGCAATCGCTTTGCCAAGAGTCTAGCTCGAGACAAAGAGAAGAAGGAGAGGTACATCTG
TAACAAGGCATCAGCCCTATTATCCCTTTTCTACATCATTAATCGATCTTGTCGTGGAATGATAC
GTGGGAACCCGGACCTAGACAAGGATAGGGTAAATGCGGCAGGAAGGGCTTTCTCACCTCCATAG
GGTCAAGGATGATGTACACTGCTTCAAATAGAAAGCGCAGAACAGCCACCCTTCAGAGCACTTCC
TCTCGTTGGTGATGACATTGAACCGGGAAGCTTGCATTATTATCA
Found at i:638853 original size:12 final size:12
Alignment explanation
Indices: 638836--638861 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
638826 AAGATGTAGT
638836 TGTTGAGATGGA
1 TGTTGAGATGGA
638848 TGTTGAGATGGA
1 TGTTGAGATGGA
638860 TG
1 TG
638862 CAAAAGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (12 bp):
TGTTGAGATGGA
Left flanking sequence: Indices 638336 -- 638835
GCTTTTGCTCTATTGCAGTATGATTATATTGCTACTCAACAACTACAAGATTTAAGGTGGCTTTG
GAGAGTTCGGGGCACAGAACGTATGAGATTCTTCCTATGGCTACTTTTTGATGACAAGCTTAACA
CAAATGTAAACCGAGCTCGCCGTCAGCCAGGGATTACCACGACTTGCTCTCAATGCCTGGGCTCT
GTCGAATCGGCACTTCACCTATTCAGAGATTGCGCCTTTGCCAAACAAGGGGGGCAGCAACGACG
GATCGCAAGATGGGTCAAATGGGAACCTCCCCCGGCGGGATGTTTTTCATTGAACACGGATGGTG
CGGTGAAACAATCCTCTGGCCATGCTTCTGCAGGAGGGTTAATTAGAAATAATGCTGGAGTTTGG
ATACGGGGTTTTACTATGAACATTGGCATCGCCGACAGCCTTACTGCTGAGCTTTGGGGTTTGAG
AACAGGTTTGCTTCTAGCTAAGGCTTTGTAGCTACAAGATGTAGT
Right flanking sequence: Indices 638862 -- 639361
CAAAAGTTGTCATACAATTTTTACAGAAAGGTATTCCACCAACGCATCACAATGCTACCTTGGTG
CATGAAGTTTTATCTTTAGCTAAGGAAGGTTGGATTCATGAGTTCAGGCATATACTCCGAGAAGG
AAATAAATGCGCTGATTTTTTAGCAAATCTTGGACAAAGCTATCCACAGGGACAGACAATTTTGA
TGGATCCTCCAGCGGAGCTCTTAGCTTTTTTGGAACATGATGCAGCAGGAATTGCTACTCTAAGA
GTCTAGCCTTATGCCTTTTCTTTTGTACCTAAAAAAAAATATATATCACAACCACGATTCTATTC
TATAAGGCTTTCTAGTCTCCAACGGGATGAAACAAGAGAATTGGCTCTCTCGCTTGTCAAGAACA
AGAGATTGGAAGTCAAATTAAAGTAGATTAAAAAGGAGCTATAGCAGCTCTCTTCACATTAGCAT
TGTCTATCTCACTATCTATTAGCGCCGGAAATGCCTACTTCCTTG
Found at i:643553 original size:27 final size:27
Alignment explanation
Indices: 643515--643569 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
643505 TCTTCGACGA
643515 TAATAATAGGAAACCCTCATCGCACTT
1 TAATAATAGGAAACCCTCATCGCACTT
643542 TAATAATAGGAAACCCTCATCGCACTT
1 TAATAATAGGAAACCCTCATCGCACTT
643569 T
1 T
643570 CCCTATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
TAATAATAGGAAACCCTCATCGCACTT
Left flanking sequence: Indices 643015 -- 643514
TGGGATCATTTAATGAGGATTTTGAATATTGAAACTTAGCCTCTGAGTATAGTTTTATCGGAAAC
CTTCAACCAAGAGCGATAGGTAAAAGGACTTTTCTTTTGTCAACGAGTTAGGAGCTCATACCTGG
TAATAAAGCAGAGAATGTAAGACCGACTCTTCGCTTTATGGCCTTATTTCTTATGGCTCACGACT
GAGCTTCAACTATAGACAAGAAAATGAAAGAAAAGAGAAGTAGAGAAGAACTAGCTTCAATAAGT
GCCCTATCACGGCTATGAGGACAAACTAGCTTATAAGGTCTCTTGTCACTTTCAAGGTAGGCCCT
ATTCTAAGATGTTCAATCTCGTTGAAGATAAAGAGTAGGGAAGAGAATTGAACTGCGTTCTATCA
GATCATAATCAGATTATGTCAGTAGGCGGGAATCTCATCGAAGATCAGTAGGTTTGGTTCTTAGC
TATATTGAGGCTCCGTTCTGTACAGACCTCTATTCTCTTCGACGA
Right flanking sequence: Indices 643570 -- 644069
CCCTATAAAAAAGGCTACTCCCCTTCTAAGCTGTTGAGTGAGCTGGTGATACCGAGAAAAGGGGG
CAAGATTCTTCAATAGCTGCGGATGTAGCATCTCCACCTTTAATCAATCATAAGAGGCTGACGAA
TATCTCCGATCAAGGCAGCAAGAGGATATAATGATAAATCAGCAGACTCTAAAAGCTGTAGAGCC
AAGAGGGCGTCCACTTCACACTCAACCAGACGAAAACCTCTTTCCCATGCGAGAGTAAGCCCAAT
TCTAATCCCATGGAGTTCAGCCACCATGTTGGAGCAGATAGTGGGGTGAGCAGAGAACGCCAAGA
CCCACTGCCCATTAGCATCCCGAATAATACCTCCTGCGCCCGGTATCCCTGGGTTACCTCTTTTT
GCTCCATCTGTATTCAGCTTAAGTGTACCACCATTAGTCGGGGCACCGACGAAATATGGGTTGTG
GAAGCTTCTCTTGTAGACAGGGGACCAAAGTCAGCAAGAATTTCC
Found at i:644370 original size:20 final size:20
Alignment explanation
Indices: 644345--644384 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
644335 AGATATCCTC
644345 TGTAATATAACCACATATGG
1 TGTAATATAACCACATATGG
644365 TGTAATATAACCACATATGG
1 TGTAATATAACCACATATGG
644385 AGCAGTTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
TGTAATATAACCACATATGG
Left flanking sequence: Indices 643845 -- 644344
TTCAGCCACCATGTTGGAGCAGATAGTGGGGTGAGCAGAGAACGCCAAGACCCACTGCCCATTAG
CATCCCGAATAATACCTCCTGCGCCCGGTATCCCTGGGTTACCTCTTTTTGCTCCATCTGTATTC
AGCTTAAGTGTACCACCATTAGTCGGGGCACCGACGAAATATGGGTTGTGGAAGCTTCTCTTGTA
GACAGGGGACCAAAGTCAGCAAGAATTTCCTTCGCTGTCAAGAGTATATTCTGCAGTATCCCAAA
CTCATCCATGAATTCATCGTTAGAATCAAATATCTTCTTGCATCGTAGTGTCCAAAGACATCACA
ATGCGGTGGCAAACCCCACAAGAAAGAAGGGAGATTTAAGCTGAACATCCAAGTTCTCCATCAAC
CATGCACGCAAAGGAAGGCCAAAGAAAGCTTCATGCTCAGAGCTCGGCACAAGACGCCTACAAAC
TCCATAGGCCGTTGTGCAGTCCCGAAGGTGATGAAAGATATCCTC
Right flanking sequence: Indices 644385 -- 644884
AGCAGTTAGAACACGCAGCTAACCCCCAAGAAGGACTACATGCATTGGTTATAAGTCGACCACTT
CAAGTAAGCCATAGAAAGTATTTCCAACGAGCAGATAAGGGTAGCTTACAGAGCCATGTGAGCTT
CATCTCATCATCGACATCGACATTCTCGCCTGAAATTAGTGCAAAATAGGCTGATTGTGTAGTAA
AAGACCCATTTTATGTGAGTCGCCAACAATAGGAATCAGTAAGAGTACCAAACCTTGGCAAAGGG
GTATCAAAGAATCTTCAGAGCCGCTTACAAAGGAACTTGGGCGAAGACAGGGTCGAGATCGCAAG
AATTATCCTCAGTGAGAAAGTCCTTAACTCTTATAGAAGTATCCACCAAATACAAAGAAGGGGAG
GCATCTTCGTAGTCAATTAAAGGTTTATTTAAGCAAGTATCCGTCCAGAATTTTGTGCCTCAACC
ATTCCCAATTCATCTTTAGATACCACTTACTATGGTAGAGGACTT
Found at i:651849 original size:25 final size:26
Alignment explanation
Indices: 651818--651875 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 26
651808 ACTTCCCTTC
651818 CTTATAC-TAAAGGCTCACCTGTCTT
1 CTTATACATAAAGGCTCACCTGTCTT
651843 CTTATACTAAATAAAGGCTCACCTGTCTT
1 CTTATAC---ATAAAGGCTCACCTGTCTT
651872 CTTA
1 CTTA
651876 GCCTAGTCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.24
29 22 0.76
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (26 bp):
CTTATACATAAAGGCTCACCTGTCTT
Left flanking sequence: Indices 651318 -- 651817
TCCGCTAAGAACTACGGTAGAGCTGTTTATGAATGTCTACGTGGGGGACTTGATTTTACCAAAGA
TGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCCTTTCTTATTTTGTGCCGAAG
CAATTTATAAATCACAGGCTCAAACAGGTGAAATCAAAGGGCATTACTTGAATGCTACTGCGGGT
ACATGCGAAGAAATGATTAAAAAAAAGGGCCGTATTTGCCAGAGAATTGGGAGTTCCTATCCTAA
TGCATGACTACTTAACAGGTGGGTTCACTGCAAATAATAGCTTGGCTCATTATTGCCGAGATAAT
GGTCTACTTATTCACATCCACCGCGCAATGCACGCAGTTATTGATAGACAGAAGAATCATGGTAT
GCACTTTCGTGTACTAGCTAAAGCTTTACATTCTGTCTGTGCTACAATACCCGATCCCTCTCCAG
ACCTTTAGCTCAACTCGAAAGCTGATGGTGTGTACACTTCCCTTC
Right flanking sequence: Indices 651876 -- 652375
GCCTAGTCGAAGAGCCCGAATGGTTGGCGAAGAAGCAGCTTTCGAAGGGGTTGTTTTCTTTGATG
GAGTAAGCGCGGATTCACTTCTTTCTTTATGGCTTGAAGGCTCTCTTCCCATTCATCTGATTTCA
GTATGGGATTTGGGATAGGTTAAGTAAGCCCTACGAGTTCTGTTACATCCAACTTTATCGGATCA
CCTATTTCAGACCCTTTCCCAGGCTTCATCGCAATACTTAGCTGCTTTTGCTTAAGGGACTTTGG
CCGTTGAATCAAGATCAGAGGTAGGGAAGGAACTGATTTAGCAATTTCCACGTCTGTTGCAAGAA
TGGCTAGCAGTAGAATAACTAAGCGAAAGGCCTTGCTGTAGTCGAAGGAAAGGAATGGAATCTGA
CCATGAGGAAAAGAGGAAGTACCTGTTCGAGAACCTGATCTCGCTAGCCGAGAATTGATTGATCA
AAGACACTGAACTCTGAGCCTTAGTTCATTTCACAGGCTCAAGGT
Found at i:661800 original size:16 final size:16
Alignment explanation
Indices: 661779--661810 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
661769 CTGCTAAGCG
661779 AAAGGAAATGTTATAA
1 AAAGGAAATGTTATAA
661795 AAAGGAAATGTTATAA
1 AAAGGAAATGTTATAA
661811 GCGGATAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.25
Consensus pattern (16 bp):
AAAGGAAATGTTATAA
Left flanking sequence: Indices 661279 -- 661778
GATCCGCGCAGACGATCTGCGCACTAACCAGACGATATGCGCTACCAAAACAGGTAGGGATTGAC
CGTCAGTCGTGTGCCAGCATATAGTTAATGGCACACGGATGAACGAAATAACTATAGAGGATTGG
TGGCAGACCCAATGTGCCCTCCGGTAGTGCCTCGAACAATCCTGGTCGTGGATCATGCTCGGGTC
GGACGCAAATGCAGAGGATGAAGTAGTGCTGAGTCGACAGACTCTGGTAGACAGTTTCTATGTGG
GTGCGCCGATAGTAGGCGCCCGGTTTGATCCCCGCTGAACCGATAGACTAACGAGCCGATACGTT
TGACTCCCGTCTTTGAAGCTAGTAGTACGAAGGAAGTGTTTTCCCTTACTGGGAGTGAAGATGGA
GGGGAAGATAAGATACGCTCGTTGAAGGCATTTTCCAGTACCGGACTAAAAGGAATCTGCCCTTG
CCCCAAGAGCTGTAGCAAAAGCAAACAAAGTAGTTCTGCTAAGCG
Right flanking sequence: Indices 661811 -- 662310
GCGGATAGAAAGTCAGCGCTAAAGCTTGTTTGCCGCGTAACGGATAGAAAGTCAGCTCTTTCAGC
CACTTCGCCTAGGGGTTCAGCGGTTGGTATACCCGTCTCGGTAGTAAATCAATTTCCTCTTCCGC
TATTGACTCTGTTGTCATGGTTGGTCTTGATGCTTAGGTTTCCGAAGAGGTTTAAATAGCGCATT
CCCACTCGTAAGTAAAGGTTGGAAATGCGTTAATTTCATACATCTTTTGATACCCCGCTTTCCAA
GTCATCTGACTGAGCCCTGACTCTCTTGCTTCCTACTCGTTCCGTGCTTTGGATGCGCTGCCTTC
CCCAAAGGTGGGGCCGGGCGGTGACTCCTCCATGCAGTGGAGTAAGCATCTTATCTCTGACTGGG
AAAAGGTACCTCTAAATCCTTTCTATGGGACTACTTTGCCTATTTGCCGGGTCGTTCCTTCGGGC
CTACTTCAAGTCCTATCTTTTATCAGATTGCCCTAGTCGCTATGT
Found at i:664470 original size:31 final size:31
Alignment explanation
Indices: 664434--664495 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
664424 CCTTAACTAA
664434 TACATTACAATTAGGGAAGCTTGGCCTATTT
1 TACATTACAATTAGGGAAGCTTGGCCTATTT
664465 TACATTACAATTAGGGAAGCTTGGCCTATTT
1 TACATTACAATTAGGGAAGCTTGGCCTATTT
664496 AAAAGAGGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (31 bp):
TACATTACAATTAGGGAAGCTTGGCCTATTT
Left flanking sequence: Indices 663934 -- 664433
GTCAGTCAGTCCAGTAAAGAGCTTTCCTTCTCGAGCTGCAATCGCACAGCAAGTGAGTAGAAGAA
GAATGGAAAGAAAGAAAAGGTAAGAAAGCAGTCCTTAACTTTACGAATAGAAAGGAGAGCTCTTC
TGACTCGCAACAAGTGAATGGAATCGATTCCGTTAAGTCCCGTTAGAGCTGAAAAGGAGATGCTA
CCTATTTTACGTAAAGCAAAGAGATAAGAGCTAGTTCGCATAAACCAATTGCTTGAACTGAAGCA
GGAGAAGCTTGCACGCGGTTCGCAGCATTAGCCACTAAAATACTAGCAGGTCTTGTTAGAGCCTC
AGTCTCCATCTCATCGTCAGGAGGGTTTCTATCTCTCTCTATAATCAGAGTCCCCAGTAGAATTC
TCCACAACTAAAACCTCCACAGAGTCTTCCTACATCATGTACGAATCCCTGCTATCTCCTATCTT
CGCAATACCCTTATCAGCAGCAAGGGAAAGAGAGCCCTTAACTAA
Right flanking sequence: Indices 664496 -- 664995
AAAAGAGGCTTATTCTTATTCTGATTCCCTGAAGGCCTAGTTGAAGCAGACTTGACTGAAGAAAG
TAAGTTGGCCTTTGAAGGAACCCGGCCATTTTGGGATTCTTTTCCACAACTTTAGTCCCCGAACT
ATTCGCAGCAGTAGCAGGACGCGCTGGAGCAACTAAACCTTTACCACCATTATCTTCTCCCTCCT
TGAACTGAGATAATGCCGCAAATCTCGATCCCCCATAATTAGCACCTACCCCGATTTTCTTGCCC
TTTTCAACTTCACTAGCCTTCTTTTTCTTACTAAATTTCCGGGATTGCGCAATCATCCAAGGCAC
GAAATCCCTTGTGCGCTGGTCTACCGTAGCAACATGTGCAGCCTCACTTCCATTCTCAACAACAT
TCACAGCTTAGCCACCTTTCTCCGCCTCCTTAGATTCTGTATTATTATTACCATTAATGGCTAGT
TTTGTGACCCATCCGGCCACAATGAAAACAGATGAGATGTAACCC
Found at i:666042 original size:27 final size:27
Alignment explanation
Indices: 666004--666057 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
665994 TTGCTCGCAA
666004 GCCTACTGACTCCTATACTTACTTGGC
1 GCCTACTGACTCCTATACTTACTTGGC
666031 GCCTACTGACTCCTATACTTACTTGGC
1 GCCTACTGACTCCTATACTTACTTGGC
666058 ATAGTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (27 bp):
GCCTACTGACTCCTATACTTACTTGGC
Left flanking sequence: Indices 665504 -- 666003
ACAGAGGTTTGAGCTTTGACCCCAAGGTCTTCGAGCGCGATAATGGGTCAACCAACTAATCTGCA
AACTTGAGATTTTGACCAGAAGCGAAATCCTTTTCGCCAGGAAAGAAAAGCCACTTGCCCATTAC
CGGACCTGGGAAAAGAACTTCTCCATTCCCTACTCCCAACCCTTCTTCTCAACCAGATTAAGAAA
AGCAAGTCAAGGAAAGAGGAAAGGTTCGGGAAGGAAGCTAGTACCTTTAACTTACGAGTCCCATT
GCGGAAATCGCAGCTGATTTGTAGGTTTTTCTCGAGGTCTTTCATCACCCACCAGCTTAGTCCAA
CAAGTAAGCAAATCCTATTTAAAGACCTAGCAGCTTATCAGCCTTTGGGGCAATGATATGGTCAA
CCGTAAATTGAATGGTGTACCATGGGAGAAGGTGCCTCTTCCAAAAGAAGAAGTAGGTCTTAATT
TGCGAGATTTGAGAAAGGACAAGATTTTCTCTCTCTTGCTCGCAA
Right flanking sequence: Indices 666058 -- 666557
ATAGTATTTTACAAGGGCGTGAGGTACTCTGTATGTGGTTAGGAGTGAGGATTAGTAATGGCAAA
TCAACCAGATTCTGGGTGGATGCTTGGATGCCTACGAGCCTACTTATTAACCATGCTTTGCGTCT
TCTATCTACCTTGCAAGCTGATTTGAGTCTTGCTGATTATTGTGACGAGTTTGGTTCTTGGAACT
AGATAGAGCTCAAGGATGTTCTGCCTATGCCTATAGTATCGAGAATCGCCGCAATTTGGATCAAT
ACTGATGATCTTAATGAAGACTCTTGGTGTTGTAAGTTAGAAGGAAATGGTCTTTTCTCGACTAA
ATCTGCTTATAACGTCCAAGTTAAAGCCCCCCTTGCTGTTGATGCTCCATGGATTAAGGTTTGTA
ATTTTCCAGGACCTAATAAAATTAAGATTTTATTGTGGCGGATACTACATGAATCGATCCCCACG
GCATCATTTCTGTTCCATCGGCATATAGCCCAATTTTATAGCTGC
Found at i:668542 original size:25 final size:25
Alignment explanation
Indices: 668508--668557 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
668498 GAGAGGCGGG
668508 ACTAAAGAATTTAGGTTTGTCTATT
1 ACTAAAGAATTTAGGTTTGTCTATT
668533 ACTAAAGAATTTAGGTTTGTCTATT
1 ACTAAAGAATTTAGGTTTGTCTATT
668558 CCGGTCTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (25 bp):
ACTAAAGAATTTAGGTTTGTCTATT
Left flanking sequence: Indices 668008 -- 668507
CAGCTATTAGTGGAAAAGGCATAATGCACTTTTCAATTTTAACGTTTCAAGCGGGTATAACGAGC
TGAGCAAATGTAGCGTAGGGGCGAAAGCGCTCTTAGTAGAAGAGGCAATCCGGGTATTGATTAGA
ATAGCACTAGTAAGGGAAAGCCTTATACAACTCTCTAGAGAAGTAATCTGTTTTCTCTCAACTCG
CTAGCTAGCTGTGAAAACTCAAAATCTCATAATTTTCATTTGCAGTTTCCTAATATGATAGGTTT
TAAGATTCCCCTTCTCTTGCTTTGAGATTTGTCGATTTAACTAAACCTGTGCCAGCTAGCCAGTC
TTTTACCATTGAGAGGTACTATTCTCCTCACTTGCTATCACCTTCAACTCATTCAACAGCAGGAG
CTGCTTTCTCAGAGATTCTCTATTCATTTGCTTAAGACTAAGACATTGATCTCGAAAGGACGACT
AGAGGTGAATCAGCGCTTGTTCCCCTTATTCTTATGAGAGGCGGG
Right flanking sequence: Indices 668558 -- 669057
CCGGTCTTGAGGCTTTTGCTTTGGCTTCGGTACCTGAGTGATAAGCTGGTTATAAAGCTTTCCCC
TGTCGATGGAATTTCTATTGAGTCTTCGGTTTATTCTTTTACTTGGTTTATCCCAAGAGCTGATC
TAAGGTATGTAGTCTGCCTACTACTTGCTAGAGATCACACTTCCGGGTCTTTCCCAATAGAAAAG
TCCTATGTGATAGGTTTTGGATAGCTGCTTTTGGTATCCACTATTAGTGAGTAAAGGGACTAAAG
GCCTTAGCTTTTACCCTCGGAAACCTCAAGACCAACAACAGACCAAAAAGAGGTTTAATAAACAG
CTTGAGATAACCCACAAAAACAAATAAACAGGCGATTCCTGTAGGGGACTTTGCCCTTAGAATTA
TTCCTTTTGGGGCTAGCATGACAAACAAGTCAACTGGAAAGTAAAAGGCTAGTTTCCCAGATGAA
TAATTGTGAGATAAAGCAGCTTTAGAGGAAGGTTTGGGATAGGTT
Found at i:669977 original size:23 final size:23
Alignment explanation
Indices: 669947--669995 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
669937 GGCGGATTCC
669947 ATTAAATCACTTCTATTAGTGAA
1 ATTAAATCACTTCTATTAGTGAA
669970 ATTAAATCACTTCTATTAGTGAA
1 ATTAAATCACTTCTATTAGTGAA
669993 ATT
1 ATT
669996 TCTTTCGGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (23 bp):
ATTAAATCACTTCTATTAGTGAA
Left flanking sequence: Indices 669447 -- 669946
TTTGGGAAGCGCTCCAGTACCGGATTCCTTAGTTGGTGAAGGAGTTTAGTTCTTTCTTGTCTCCT
GTGTCTGGGATGGCAGTTCCTCATGCGCATATACATAGACATGCACACCCGCGAACGAATTAGAA
CACGTGCGTTAAGTTAGTAGCTTTTCATAAGCGATACCCGAACCAACCTTTAACCCCATTCGCTG
CTACGCAGCTCACCTCTAAAGACCCTTCGCCTAAAGGCTCACCCTCTTCAATCCCTTCGCCTTTC
GGCTCACCTTCAAAGCCTTCCTCAACCTGTTCTGTTAGCTAGCCAATCGCTAAAAGCGAAGTTGG
TTTATGATGATTTGGAATTGGTGGAATAAGAACGCCCATCACGAACCTGGAACAGTCAGTCGCCG
ATTAAGAATCAATCGCTACTTTCCCGTCTTCGCTGACTTGAGTCCTAACCACTCTCACTTTCTGA
CAGAAAGGAGAACCTATAGCAACAAGAGAAAGAAAGGCGGATTCC
Right flanking sequence: Indices 669996 -- 670495
TCTTTCGGACCTTTAACCCGCTCTCTAGCAAGTCAAGTAAAAGACTCAACCGAATCCATTTATTA
TGGGAATAGCTCTACGCTCTTAGGAAAAGGTTTAGCAGCAGGACCTTAGCTCGGATCTATCTCAT
TTACTGGCTAGAGTGCGAGTGGGAATTTACTTTAACTAGCTGCACGAGAGAGGGGGGGCATCAAA
ATCAACTACTTACCGAACCGGTGAACTAAACACGCCATCATCCAAGTCATGATCCGCAGAGTTAA
ACCCTCTTTCATCAGCTCGTCCAACCTTAGCCAACTCTAAAACTAGACCAAAGCCATCATAAGAC
CTTTTTGAGGTACCAGAGGAGTCTTATCCAACTGGCTAGCTGAGCTCTTCATCCTGATCGAATCC
CTTAATAGCTAAATCCTAATCCACTACATCCCTTTTTCTTGATGCAAGACTAGAGAATCCAATTC
ACACGAATTAGCTGGATTCAACTCCACTTGCCCGAGTTTATGTTT
Found at i:673855 original size:27 final size:27
Alignment explanation
Indices: 673817--673897 Score: 162
Period size: 27 Copynumber: 3.0 Consensus size: 27
673807 CCAGTGTCTG
673817 AATGTGGAGTATGAATATCCTTCCCAT
1 AATGTGGAGTATGAATATCCTTCCCAT
673844 AATGTGGAGTATGAATATCCTTCCCAT
1 AATGTGGAGTATGAATATCCTTCCCAT
673871 AATGTGGAGTATGAATATCCTTCCCAT
1 AATGTGGAGTATGAATATCCTTCCCAT
673898 CTAGAGGACT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
AATGTGGAGTATGAATATCCTTCCCAT
Left flanking sequence: Indices 673317 -- 673816
CGGAAAGGTTCAAGTCCCAGATCCTACAACAATGGGAGCGTTGCCTCATCATTAAGTTGTTGGTA
AGGTCTATTTTTTATAAAGTTTTGTCTGAGAAGCTTCAGAAATTATGGAACCCGAAGGGGGAAAT
CAGTCTGATTGATCTTGGTATGGGTTATTATTGTCTTCGTTTTGCTTCAACAGCTAATCTAACTT
ATGTTATGGAAAAGGGACCCTGGACTATCTTCGGGCATTACTTAACTGTGAGGCCTTGGATACCG
GATTTTAATCCGAGCTCGGCAACCATTGAGTCTACCACAGTTTGGCTTGGCAGCCCCTTGCTTCC
CATGGAATATTACCACCCTAGAATGATGATGACTTTGGGCAATTCCGTTGGTAAGGCGGTTAAGG
CTGATTTCAATACCAGGCATGCATCTATAGGCCGATTTGCTAGGGTGTGCGTAGAGGTAAATTTC
AATGAATCTCTCGTTCCCAAAGTCTTTTTCGAGGACCAGTGTCTG
Right flanking sequence: Indices 673898 -- 674397
CTAGAGGACTTAGTTTCTTTGATTGCCTTCTCCTTCGTACTCTCTCTTGAGTTAGGAATAAGAGG
CTTTCGTGATGGCATGATATGGAGCTTGTTCAACATTCCCTCTTCTGGTAGTATGTAATGAAGGT
CAGTGCATTGAATTGAAAGGCCTCACGAGTCTGATTTGGATCTATTCGGAGCCTAAAGAGCGGAT
ACGCCCGAGCCGTAAGCAGAGATTGATCTCTTCTCTCTTGAACATGATGGGAGAACGGACCCCGG
AGTCGGAGCTAAGCTTTGAAGACTCTTAGTATTGTAGGGTCCGTCTAGGATACTTGAATGTGTTG
GACGATTGTCTACCAAAGAAAGTCCTACAAATGAAGACTTGGGCCTGATGAAACCTCGAGCCCAC
AGAAGAAGGGCCAAAGCACAAGAAGCAAGCCTACCCATCATCAAAGAAAGCCCAAATGCTTGAAT
GACCTCATTGTCATATAAGCCCTTTCCTTACTCCTCAATATAGTT
Found at i:674648 original size:21 final size:21
Alignment explanation
Indices: 674622--674663 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
674612 AAAAGACTAT
674622 GAAGCTGCCACTATGTTTGGC
1 GAAGCTGCCACTATGTTTGGC
674643 GAAGCTGCCACTATGTTTGGC
1 GAAGCTGCCACTATGTTTGGC
674664 TTATGTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.29
Consensus pattern (21 bp):
GAAGCTGCCACTATGTTTGGC
Left flanking sequence: Indices 674122 -- 674621
CTTCTCTCTTGAACATGATGGGAGAACGGACCCCGGAGTCGGAGCTAAGCTTTGAAGACTCTTAG
TATTGTAGGGTCCGTCTAGGATACTTGAATGTGTTGGACGATTGTCTACCAAAGAAAGTCCTACA
AATGAAGACTTGGGCCTGATGAAACCTCGAGCCCACAGAAGAAGGGCCAAAGCACAAGAAGCAAG
CCTACCCATCATCAAAGAAAGCCCAAATGCTTGAATGACCTCATTGTCATATAAGCCCTTTCCTT
ACTCCTCAATATAGTTGCAGGTAGTCTTCGATACATTAAGATTTGCAGCACCTATTCAAGAGCTG
GGGAATACGCTTGCAAGGTAAATCTAGATTGAGGGTCACTCAACAACAACTAAGATCTCTACTGG
ATAGAGGCGGCGCATCTCGCTCGAGTGAGATCGAACAATTAATCAATCGAGAAAAAACATTTATC
CAAAAGATTTATTCATTACATTACTACATAAAAATAAAAGACTAT
Right flanking sequence: Indices 674664 -- 675163
TTATGTTGATTAGTATTTTATGGGCTTAAAATGTTGATTAGTCAGTGGGGGGAACGAACCCACCT
CGGAGGTACTTTCTGCCTAACCTGCAACCCGCATACGCCCACACAAAGCATCCCTAACATCATTT
GCTAATTTACTGGACACAGCAAATACCTCAAAAGCCGACGATAAGCTTGAAAGACCCACTGGTTT
CGGCTTTTCCACAAAGACCATATAGTTAAACAAAGCAAAAAGCCCATGTACTGTTGTTGTTTCAT
TGGCATTCAAACGAGTCTTTTGTGCTACAACTCAGTGGAGTGATCCCGGTGTCTTTAAATAATAA
TACCTAATTGACCGTCGGTGATCCTGTCGCTAAGAGTCATAAGAGGTCTACCAGCTACTTGTACT
ATTCTGTTCCTGCCACTCTTGCGGAGGCAACGCAAAGCCGGAAGCTACCTACGAATTGGTTTTGA
AATTTCTTCATTAAGATGGGGACGTGCGCAGCTAAATAGCAGGGC
Found at i:675642 original size:16 final size:15
Alignment explanation
Indices: 675617--675646 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
675607 ATCTTACGAG
675617 AATTATTATGAATAT
1 AATTATTATGAATAT
675632 AATTCATTATGAATA
1 AATT-ATTATGAATA
675647 GCTGAACGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (15 bp):
AATTATTATGAATAT
Left flanking sequence: Indices 675117 -- 675616
GAAATTTCTTCATTAAGATGGGGACGTGCGCAGCTAAATAGCAGGGCAAGCAGCGGAGGAGAGGT
TCTTATTGCCGATAGGCTTTGTTGGTAGGCGGGCGAAGACGAACCGGGTTACCAAAGTCACGATC
AGAAAGGTTGAAATCTGGGTCATGCATCTGGAAAGCGCTGGTTCAAATCCAGCTCGTGACAAGAC
GAAAGCAATAAAGAACATAACAAATGCCTCACTTCCGTCGTCAGCCTTTGTCATTAGACCACTAT
CTATATATGTATTTTCAGCCTGAGACTCTTGAATCTTTCCACGAGATGGCAGTAGGGAGTAGAAG
CAGTGTAATAGATCCACTCCAATCAGATAATCTGCTTGAGCTCTCGGCTCTGAGAACTGGTTTAC
CACTCGCAGCTAAGCCAGTCTTCCTAGAGCCCTTTAAGCCTGATTGAACTCACTCGGGGGTATAG
ATTGAGGGGAGTGAGTACGAAAGTGAGAAGATCTGATCTTACGAG
Right flanking sequence: Indices 675647 -- 676146
GCTGAACGAGAAGCCCATTTCCTCCTTTAAAGCCTAGACAATCAGGATAGACTAGACATGAGGAG
AAGGTATTGCAGGCTAGCTACCATAAATACATAGGTTGAGGCTTACATAGACCGTTCGTGAGTAT
CCATTGATTCTTCTCTCCCTGACTCTACGGTCGAAGCTTCCTACTAGCTAAAGAAGAAATAGGCC
AGAGTATGCATCCGAGGAAAGTAATCATCTAACCCGATCGAATAAACAGGAGCAATTGCAGCTTA
CCCTCTATCAAACCTTTCCCCGTTTCTAGAATCCATGACAGGTACCGAAAGCGAGAAAAACACTT
CCTGGTCTTTCCCGGAGAAAGACAAGACCGACAACAAAACAGCATATTCCGCGTATAGGGGGATG
CTCGGAGTTTGCCCATAGAAAGTTCAATCAGTATCGGGGTCAGTCAAAGTTTCAAACGTCTAGTT
TACCCGTCTTTTTCGGGTATGTACTTTTTGTTTAGGGCTGTTATT
Found at i:677478 original size:14 final size:14
Alignment explanation
Indices: 677459--677486 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
677449 TCTTATTTTA
677459 TAGTCAATTAATTC
1 TAGTCAATTAATTC
677473 TAGTCAATTAATTC
1 TAGTCAATTAATTC
677487 GTAATTCCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
TAGTCAATTAATTC
Left flanking sequence: Indices 676959 -- 677458
CGAAAGTAAGTAAGAAAAGACAACGTATAGAACAACTCTTTCGGTTTCAGCAGACGGGTGATCCA
AGTTCAGTTCAGAGTTCCCTTCTTGATAAGCTAGATTGGGATTAATGGTTTAGTTGCCTTCCTTA
TAAGAAGGAGCGCCCTTATTTGATTTGATGACATCCCTTCTTTTCTGAAGGGAGTGGGCTATTAC
ACGAACGGTCATGGGCAATGTGCTTCCGGTTGCTAGCCTTTTTTACCTGCTTTATTGCTTTCCCC
GAAACCCTTGGTTGAAGGTAAAGGTCACCTCTGTCCCCTCGCAATCAATAATACCGCTAGCAAGG
TAGCTATTATAAAGGAATGAAAGGAAGTCCCTACCAAGTAAAATCCCAGAGAAAAAGCAGATTCT
TCAAAAGAAGTAAGTTGATCACTCGTAGATGTCGATTGAGTATAGGTCTCATTGATTGCTCGCAT
CGCGTATCGACTGATTTATCTTCTGAATTCTTCTTTCTTATTTTA
Right flanking sequence: Indices 677487 -- 677986
GTAATTCCTCTTTTTCATTCAAGCTTGAGTAAAAGAGAAGGCTTTCTCAACAGGTAGCAATTGCA
GAAAAAACCATTACGGATGAATTAGAAACAGTAAATCCCACGAAAACCCGAGCAGATGATGTCTG
CCCCAGGAAGATAAGGGAGATAGCTCTTAGGAAGGCTTAAAGTATAGGTTTCAAAGACTTAGCTC
GACGCTCTTTCTTAGCTGATTTGCTTGCTTTACTTTACTTGTTTTTCTAGTTTCAGGGGATAGCA
TCTCTTCCAGTATCTTTGAATCGCTTTTTCTAAGGGTTTCTTCGATTCCAGTTCACGGCTCGACT
AGAAGGAGAGGGACGATTCGTCAGAAAATAGAAAACTTCATACCCTCTCTTGGGATAAAATCTGC
CTCCCTAAAGAGTATGGTGGTCTCAACATTAGAGATATGAAGAAATACAACCTTGCTTTCCTTGC
TAAGCTGGGTTGGGCAATTATCACAGATAAAGACGCTCTATGGGT
Found at i:681241 original size:17 final size:17
Alignment explanation
Indices: 681219--681253 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
681209 CCCGAAGAGA
681219 ATATAATGAAACTTAAC
1 ATATAATGAAACTTAAC
681236 ATATAATGAAACTTAAC
1 ATATAATGAAACTTAAC
681253 A
1 A
681254 CAGATGGAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (17 bp):
ATATAATGAAACTTAAC
Left flanking sequence: Indices 680719 -- 681218
AAGTTCATAGAATCGATTCTCCTTTCGATTCTTATTTGTCTTTTTTCCTGGCATACGAGCCAAGC
TTAGAAGGCTATTTATAGGTAACGTCAATAGTTAAGGAACTCGAAGGCCCTCTTTCTTTCTCTGA
TAGCCGATGTTGTGAAGATGTCTTCAACCAAACCCTAAATGCAGATTTAGCGAAGGTTACTAAAG
CTCTTTCTGTAAGCCTATCTTTCTTTGTAAGCTTTCTCGTAGTTCAAGACTTGGGCGGTTTAATC
CCAAATACGCCAAAGAAGAGGACTAATAGGACAGGTTGTGTTTTTTTCAATTTTCATCGCAGGTA
AGAATTTGTACTCGCCGATGCAATATAGTATTTTGGCAAGATGCTAATGATAATAGTGTTCTGGC
TCTATACAACAATATTGTTGACACTGCTTTGTGGGTCTATGGCGCTTTCTCTAAACCAAGGCTTA
CGAGGAAGGATGATAGGCTCATTAGATGTATTCCACCCGAAGAGA
Right flanking sequence: Indices 681254 -- 681753
CAGATGGAGCTGCGAGGGGTAATCCTGGAGTTTCTGTAGCAGGTGGTTTGATCAGAGATAATGCA
GGATTCTGGCTTGCTGGATTTGAAGCGCATTTTGGTATCTGTTCGAACTCAGTGGCTGAACTACA
AGCGCTGCGGTTTGGGTTGATGCTTGCCTGGGATGAAGGATTCTTCAATGTTATTTGCGAACTTG
ACGCTATAATAGTCCTGGAATTGATCTCATCCGCTGATACACAAGTTCATCCATTGGGAAGTCTC
ATTGCTGACATACGTGAGCTGTTAGCGACATACGTGAGCTGTTAGCGAGGGACTGGCAATGTCGT
CTTCAACACACTCTGAGGGAAGGCAATTTCGCAGCTGACTACCTGTCAAAGGAAGCCTGCGATTT
GTAGTTAGATTATGTTCTTCTTATGGATCCACCGCCAGGCTTAAATGCCATTCTATCTGCTGATG
CGAGGTAATTTTGAATACCCGTGGTTTTGACTTTGCATAGTTTGA
Found at i:681545 original size:20 final size:20
Alignment explanation
Indices: 681520--681561 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
681510 TCTCATTGCT
681520 GACATACGTGAGCTGTTAGC
1 GACATACGTGAGCTGTTAGC
681540 GACATACGTGAGCTGTTAGC
1 GACATACGTGAGCTGTTAGC
681560 GA
1 GA
681562 GGGACTGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (20 bp):
GACATACGTGAGCTGTTAGC
Left flanking sequence: Indices 681020 -- 681519
TTTTTTCAATTTTCATCGCAGGTAAGAATTTGTACTCGCCGATGCAATATAGTATTTTGGCAAGA
TGCTAATGATAATAGTGTTCTGGCTCTATACAACAATATTGTTGACACTGCTTTGTGGGTCTATG
GCGCTTTCTCTAAACCAAGGCTTACGAGGAAGGATGATAGGCTCATTAGATGTATTCCACCCGAA
GAGAATATAATGAAACTTAACATATAATGAAACTTAACACAGATGGAGCTGCGAGGGGTAATCCT
GGAGTTTCTGTAGCAGGTGGTTTGATCAGAGATAATGCAGGATTCTGGCTTGCTGGATTTGAAGC
GCATTTTGGTATCTGTTCGAACTCAGTGGCTGAACTACAAGCGCTGCGGTTTGGGTTGATGCTTG
CCTGGGATGAAGGATTCTTCAATGTTATTTGCGAACTTGACGCTATAATAGTCCTGGAATTGATC
TCATCCGCTGATACACAAGTTCATCCATTGGGAAGTCTCATTGCT
Right flanking sequence: Indices 681562 -- 682061
GGGACTGGCAATGTCGTCTTCAACACACTCTGAGGGAAGGCAATTTCGCAGCTGACTACCTGTCA
AAGGAAGCCTGCGATTTGTAGTTAGATTATGTTCTTCTTATGGATCCACCGCCAGGCTTAAATGC
CATTCTATCTGCTGATGCGAGGTAATTTTGAATACCCGTGGTTTTGACTTTGCATAGTTTGACTT
TCTATCCTCATGTAACCAAAAAAAAAGTACACCGTTTGGATAGACATCGGAACAAAAGGAGATAT
GGGTGTTACGTAAAACCCTCCAAAAGACATGTGGTAGAGATGCAATTATAATGTATGTATTCAAG
CTTATAAATAATCATACTCATTCTATCATCTCATCATAGTAGTTTTTCATAAGCGTACCCAAAGA
ATCGACGAACGGGTTTATAGCACGGGACACAGATAAAAGGTAATGGGGTCTCATACAATATAGAT
CTCCTAATAGTATACAAGAGATCATCACAAAATAGGATAACACGC
Found at i:682260 original size:26 final size:26
Alignment explanation
Indices: 682238--682291 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
682228 TCCATTCTGT
682238 TAGTACAGATAGACGTTGTATTCATC
1 TAGTACAGATAGACGTTGTATTCATC
682264 TAGTACAGATAGACGTTGTATTCATC
1 TAGTACAGATAGACGTTGTATTCATC
682290 TA
1 TA
682292 AATCTCCCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (26 bp):
TAGTACAGATAGACGTTGTATTCATC
Left flanking sequence: Indices 681738 -- 682237
ACTTTGCATAGTTTGACTTTCTATCCTCATGTAACCAAAAAAAAAGTACACCGTTTGGATAGACA
TCGGAACAAAAGGAGATATGGGTGTTACGTAAAACCCTCCAAAAGACATGTGGTAGAGATGCAAT
TATAATGTATGTATTCAAGCTTATAAATAATCATACTCATTCTATCATCTCATCATAGTAGTTTT
TCATAAGCGTACCCAAAGAATCGACGAACGGGTTTATAGCACGGGACACAGATAAAAGGTAATGG
GGTCTCATACAATATAGATCTCCTAATAGTATACAAGAGATCATCACAAAATAGGATAACACGCT
TAAAAGTTGGAGTGCGGACCAGAGTTAGCCGATCATCATCCAGAAAGGAAGCCTGGGATGTACTA
CCTACATTTCTTGAACATGAGATCTCTATTTTCTTTTTAGGGCTTGGGAAGACTTGTGCGAGCCT
TCTTCTTATTAGTTAGCTCACAGGAGACAGGAACTTCCATTCTGT
Right flanking sequence: Indices 682292 -- 682791
AATCTCCCCGTCCAGAGAGAAGAAGACAATCTAGATAGAGGCGCTCTTACAAGGGTAGAAAAAGG
CAAATACGTTCATAAAACAGGCTCTCCGGAACTTCCCACAAGAGCATCTTCTTTTTCTGAATGGT
TCCCATAACACTAAACCCCTTTCCATCTATCTCTCCGTAACTAGCTACATAGGCATCATTTTCCT
TGTCTGGTTTGTTGGCTTTCTGTTTGAAAAGTAGAAACCAGCCCCTGCGTGGTATCTTTGGTCAT
GACCTTTTGCAGCCTGGTGCCCCCTATCTGTTAGCAGCAGACCTACTTCCATAAGTTAGACTTCT
CACCAACCAAAAAAAGAGGACGACTCGAGATCAAGCATGTGATTAAAATGAAACTCGAAAGAGAT
TCCTATTCACATTTATTCAATGCTTCCATATTTTTTGAATCACTACAACTATACGAAAATCTTGA
TTATACGAAAATCTTTCTTTATGGATAGTCTTTGTCACCTACTTC
Found at i:684525 original size:25 final size:26
Alignment explanation
Indices: 684470--684522 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
684460 CTGGTTAAAG
684470 CCTGGTTTTTTTGTTTATTGTTTCGA
1 CCTGGTTTTTTTGTTTATTGTTTCGA
684496 CCTGGTTTTTTTGTTTATTGTTTCGA
1 CCTGGTTTTTTTGTTTATTGTTTCGA
684522 C
1 C
684523 TGGGTAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.08, C:0.13, G:0.19, T:0.60
Consensus pattern (26 bp):
CCTGGTTTTTTTGTTTATTGTTTCGA
Left flanking sequence: Indices 683970 -- 684469
AGCCTATTGCTTGAAGGAATGAGGCATACTACTTAATGCCTCACGACTGATAGAGACAAGAACAT
TACAGGTAAGAATAGGAAGTAGAGAAGAATAGAGGAGGAAAGGCGTAGTTAATTTCAGTGAATAT
GGGAATCGAAGCATTTCTTTCTACATTCCCAAGCACTGAAGAAGCAGATTTGGAAGCCTTACTAA
CAGCCTCTTCGGATTACGTCTCATCTCCCTTCCTTGGAACAAGTGATTTGAATCCGTCCTTTCTT
CTTTATGAAGTGGGGTTTTTTAGGCGAATAAGAGATCCAGTTCTTTCTTTAAGAGCTACTTCGGA
CCCTTGCTCTCCAGCCAATAGGTATGTCGCCTTTACTTTAAAGAGGAGCAGGGCAGGACCTAGTT
ATACCTATAAGAAAGGGCGGGACAGAAGGAGAAGGACTAACGGATAGACAAGGGGATTAGCTCTC
CGCTCTTTTACTGGACTGCTAGTATCTAAAGCTAGCTGGTTAAAG
Right flanking sequence: Indices 684523 -- 685022
TGGGTAATTTTTTCCCAACTTTCCTGATGAAGTGGGCAGAAGAGCTCTATCCCGAACTATTCCTT
GAGATTCTTTCAGGACGGGTCTCTTACCGGACCTTGGATGAAGCAACTCATTTATCCGCTTTGAT
TTCCAGGGATTTCTTTCTAGATTCCCTAGCGGAGTAGTAAGCTTTGAAATGAGTACGAAGCGTCA
AGGAAAAGCTATCAGCTCACCTGAATTCCTAAGTCTATTTCTTAAGTAAGAGAGAAGAGGAATGC
CCTCTATAGCGGATAAGTTGGTATAAAGCTTTCCCTGCAGTACGGGAGCTGGCTACACTCGCGCG
AGAGAATGGAAAGGCGTAATGGGCAATGTGCTTCCTGTTGTTTGATGAGTAAGAGACGTTAGTCG
GAGTCTTATCACCCCGAGGTTGAAAAGCGTGATTAGAACGATGAATCTGATTCGCCTCCGACTCA
ATCTCTTAACTCGCTTTCGACGCTTTATCTCGGGTTCCTTATCTA
Found at i:684533 original size:26 final size:26
Alignment explanation
Indices: 684478--684533 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
684468 AGCCTGGTTT
**
684478 TTTTGTTTATTGTTTCGACCTGGTTT
1 TTTTGTTTATTGTTTCGACCTGGTAA
684504 TTTTGTTTATTGTTTCGA-CTGGGTAA
1 TTTTGTTTATTGTTTCGACCT-GGTAA
684530 TTTT
1 TTTT
684534 TTCCCAACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.11, C:0.09, G:0.20, T:0.61
Consensus pattern (26 bp):
TTTTGTTTATTGTTTCGACCTGGTAA
Left flanking sequence: Indices 683978 -- 684477
GCTTGAAGGAATGAGGCATACTACTTAATGCCTCACGACTGATAGAGACAAGAACATTACAGGTA
AGAATAGGAAGTAGAGAAGAATAGAGGAGGAAAGGCGTAGTTAATTTCAGTGAATATGGGAATCG
AAGCATTTCTTTCTACATTCCCAAGCACTGAAGAAGCAGATTTGGAAGCCTTACTAACAGCCTCT
TCGGATTACGTCTCATCTCCCTTCCTTGGAACAAGTGATTTGAATCCGTCCTTTCTTCTTTATGA
AGTGGGGTTTTTTAGGCGAATAAGAGATCCAGTTCTTTCTTTAAGAGCTACTTCGGACCCTTGCT
CTCCAGCCAATAGGTATGTCGCCTTTACTTTAAAGAGGAGCAGGGCAGGACCTAGTTATACCTAT
AAGAAAGGGCGGGACAGAAGGAGAAGGACTAACGGATAGACAAGGGGATTAGCTCTCCGCTCTTT
TACTGGACTGCTAGTATCTAAAGCTAGCTGGTTAAAGCCTGGTTT
Right flanking sequence: Indices 684534 -- 685033
TTCCCAACTTTCCTGATGAAGTGGGCAGAAGAGCTCTATCCCGAACTATTCCTTGAGATTCTTTC
AGGACGGGTCTCTTACCGGACCTTGGATGAAGCAACTCATTTATCCGCTTTGATTTCCAGGGATT
TCTTTCTAGATTCCCTAGCGGAGTAGTAAGCTTTGAAATGAGTACGAAGCGTCAAGGAAAAGCTA
TCAGCTCACCTGAATTCCTAAGTCTATTTCTTAAGTAAGAGAGAAGAGGAATGCCCTCTATAGCG
GATAAGTTGGTATAAAGCTTTCCCTGCAGTACGGGAGCTGGCTACACTCGCGCGAGAGAATGGAA
AGGCGTAATGGGCAATGTGCTTCCTGTTGTTTGATGAGTAAGAGACGTTAGTCGGAGTCTTATCA
CCCCGAGGTTGAAAAGCGTGATTAGAACGATGAATCTGATTCGCCTCCGACTCAATCTCTTAACT
CGCTTTCGACGCTTTATCTCGGGTTCCTTATCTAAGGGATTCGTT
Found at i:689481 original size:25 final size:25
Alignment explanation
Indices: 689449--689497 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
689439 AAGACCACAG
689449 AGGAACTCCAGAAACTTATCTAGAC
1 AGGAACTCCAGAAACTTATCTAGAC
689474 AGGAACTCCAGAAACTTATCTAGA
1 AGGAACTCCAGAAACTTATCTAGA
689498 TTCTGCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.20
Consensus pattern (25 bp):
AGGAACTCCAGAAACTTATCTAGAC
Left flanking sequence: Indices 688949 -- 689448
TTGGTATTTGTATATCCTACGTATCCCAATCATCCCGTATGGGTGGATTGTATTCAGCAAGGCCC
TGACCGATATAGGTCTCGCGGAGACTTTGTAAGGTCCCCTACCCTAGAAGCCTTTGGTAAACTCA
GCCAGTTCCGGAACTGATAACTTATTTGTTAGCTCACCAGAGCTAGCTCATATACTTGTCCCTAG
AGTCGGTGATTACAATATCATCGCCTAGTATAGCATACCCTCTGAAAAGCATCCCGGGTCTGTTC
AGCACAGCATCAATTTAAGACATAGTGATAAAGTGCGAACAAAGGCATGGTAAAAAAGAGACAGC
CCTGATAACTCTTATGATGATGAAATCGCAGCGTTGCTGCTAACAAGCTTTCTATCGAAAAATCG
CTATGAATACGTCCATAGTTAAGGAAGTTCGTAACTGTAGCTAAGTATTCCATTGAACATTCATT
TACTCCGGCTAGAGAGAGATGGATCAAGGCTCGGCAAGACCACAG
Right flanking sequence: Indices 689498 -- 689997
TTCTGCAATTGGTTTGGCTGGTAGATGAAAGGTGGGCTTTTGAAGACCGGTAGAGGAGTAGACTG
CGGAAAGACATCCCAGGGAACAAGAAATAAGGAAGCAAGCCCGTTAGAAAAAGGCTCTGCGCCAG
ATGTCTAAGCGAATCCGGTAGCTGGTCTTCCATAGCTATGCCCTGGACTGGAGCTTTCCTATACT
CTCAGGTCCTGCTGCTGTTGAATGAGAATCAGTGGATAGGCAAGCTTCAGAGTTAGCTTTCGAAC
TGATTAGCTCGAGTTTCTAGCCCGTTTTAGAGCTATAGCCCTGTTTTCACTTCTATGCCACACAC
GCGCATTCATTGATTTGGTTCGTAAGCTTCATAGGACAGAGACTCAAGTCCGTAAGCTGGAAATG
ATATGCCTTAATAAAGGGGCTAATCCGATCCATAAATAAAAGCTCTGGTCTCGGATATCTTACAC
TGCAGAGGTATAGGTTGCATTTCATTGCATAGGTATAGGTTGCAT
Found at i:689987 original size:25 final size:25
Alignment explanation
Indices: 689953--690003 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
689943 TATCTTACAC
689953 TGCAGAGGTATAGGTTGCATTTCAT
1 TGCAGAGGTATAGGTTGCATTTCAT
*
689978 TGCATAGGTATAGGTTGCATTTCAT
1 TGCAGAGGTATAGGTTGCATTTCAT
690003 T
1 T
690004 CTCGTAGACG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.39
Consensus pattern (25 bp):
TGCAGAGGTATAGGTTGCATTTCAT
Left flanking sequence: Indices 689453 -- 689952
ACTCCAGAAACTTATCTAGACAGGAACTCCAGAAACTTATCTAGATTCTGCAATTGGTTTGGCTG
GTAGATGAAAGGTGGGCTTTTGAAGACCGGTAGAGGAGTAGACTGCGGAAAGACATCCCAGGGAA
CAAGAAATAAGGAAGCAAGCCCGTTAGAAAAAGGCTCTGCGCCAGATGTCTAAGCGAATCCGGTA
GCTGGTCTTCCATAGCTATGCCCTGGACTGGAGCTTTCCTATACTCTCAGGTCCTGCTGCTGTTG
AATGAGAATCAGTGGATAGGCAAGCTTCAGAGTTAGCTTTCGAACTGATTAGCTCGAGTTTCTAG
CCCGTTTTAGAGCTATAGCCCTGTTTTCACTTCTATGCCACACACGCGCATTCATTGATTTGGTT
CGTAAGCTTCATAGGACAGAGACTCAAGTCCGTAAGCTGGAAATGATATGCCTTAATAAAGGGGC
TAATCCGATCCATAAATAAAAGCTCTGGTCTCGGATATCTTACAC
Right flanking sequence: Indices 690004 -- 690503
CTCGTAGACGGAATTGTTCTACGATATTATTGATTAATCAACTAGCCGCTTTCACATGGTTCAGT
TAAGGTTTTTTTGCTTTGCTTGGTCGCTCTACTAAAGCTAAGGTAGCTGAGGTCAGATCTGGTTT
GCATTCTATTCTATTCAAAGCATCTTCCTTTGTTGAATGTCATTTTTGTTGAATGTCATTTTTGC
GTGTTCTTAACCGATCGATCAACCCTTTCCCTTCTTCATTTTTACTCGCCTACTCTTCTATTCCC
GTTCGAGTGACCCTAGTTGAATGCGGTCACTCTTCTATCTTTTTCCAGAAAGAAGAGCCTACACT
CCCCCACGCTGACCCATCCAGTACCGACGAGGGCCAACGTTTGAAAGTCTTTAAGTCCTTTAGGG
CCAGAAAGAAAGTTCCTCGTGCGACAAACTCCGTTCCTTAGGCAAGTAGGTTATACAAAGTGGGT
TTTAGGACGAAGAATAATGGATATATTTACGTGGATAAGAGGACG
Found at i:690183 original size:16 final size:16
Alignment explanation
Indices: 690162--690197 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
690152 AGCATCTTCC
690162 TTTGTTGAATGTCATT
1 TTTGTTGAATGTCATT
690178 TTTGTTGAATGTCATT
1 TTTGTTGAATGTCATT
690194 TTTG
1 TTTG
690198 CGTGTTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.17, C:0.06, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTGTTGAATGTCATT
Left flanking sequence: Indices 689662 -- 690161
GCTATGCCCTGGACTGGAGCTTTCCTATACTCTCAGGTCCTGCTGCTGTTGAATGAGAATCAGTG
GATAGGCAAGCTTCAGAGTTAGCTTTCGAACTGATTAGCTCGAGTTTCTAGCCCGTTTTAGAGCT
ATAGCCCTGTTTTCACTTCTATGCCACACACGCGCATTCATTGATTTGGTTCGTAAGCTTCATAG
GACAGAGACTCAAGTCCGTAAGCTGGAAATGATATGCCTTAATAAAGGGGCTAATCCGATCCATA
AATAAAAGCTCTGGTCTCGGATATCTTACACTGCAGAGGTATAGGTTGCATTTCATTGCATAGGT
ATAGGTTGCATTTCATTCTCGTAGACGGAATTGTTCTACGATATTATTGATTAATCAACTAGCCG
CTTTCACATGGTTCAGTTAAGGTTTTTTTGCTTTGCTTGGTCGCTCTACTAAAGCTAAGGTAGCT
GAGGTCAGATCTGGTTTGCATTCTATTCTATTCAAAGCATCTTCC
Right flanking sequence: Indices 690198 -- 690697
CGTGTTCTTAACCGATCGATCAACCCTTTCCCTTCTTCATTTTTACTCGCCTACTCTTCTATTCC
CGTTCGAGTGACCCTAGTTGAATGCGGTCACTCTTCTATCTTTTTCCAGAAAGAAGAGCCTACAC
TCCCCCACGCTGACCCATCCAGTACCGACGAGGGCCAACGTTTGAAAGTCTTTAAGTCCTTTAGG
GCCAGAAAGAAAGTTCCTCGTGCGACAAACTCCGTTCCTTAGGCAAGTAGGTTATACAAAGTGGG
TTTTAGGACGAAGAATAATGGATATATTTACGTGGATAAGAGGACGTGTATAAGGGGCAGACCAG
TAAGACCTTGTCTAAAAATCCTAAGGTGTCTTAACGGGTTAAGAAGGGCTATTCAAGGATATTCT
TTCTACCTCCTCTACTAAAGGAGCCTGCTTTTTCCCTTCTATTTATACTGTCAGGCAGCGAGTAG
GAATTGCCCTCCAGATGACCGGCTAGTAGATCTTTCTCAAACTCT
Found at i:702384 original size:14 final size:13
Alignment explanation
Indices: 702357--702381 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
702347 ATTAGGATTC
702357 CCATAAAGAAAAG
1 CCATAAAGAAAAG
702370 CCATAAAGAAAA
1 CCATAAAGAAAA
702382 AGCTCTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.12, T:0.08
Consensus pattern (13 bp):
CCATAAAGAAAAG
Left flanking sequence: Indices 701857 -- 702356
AGATGGGTAAGGCATATAGCCCGATCAATGCACACCAAGTGCTTCGAGGTACATACCGATTTCTT
GCCCGCGCGGATTCCTTGGAGTAGTCAGTGACTCACTCTACAGCCACCATCTGAGATAGGCCATG
TAACCGTATGGATTTTTGACAGACCTGTACTGAGATCAGAGAGTGAAAGAGAGGAATTTGTCAAA
ACTCTTTTGATGACTGCTGCCGTAAACAAGCAAACTGAAAGCCTTACGGTGGACTCCGTCCGATG
GGGTCAAGCTCTTTCAAGCAGGGGATTCTCGCTAGCAGTTCGTTCTCTCGTTGTGACTGAATATG
GTTACGTTGACCGAACCGAGGTTGAGGTAGAAGGACAAGGGTAAGGAGGAAGAGGTGACAGTGAT
TCGGGAGTAGGTGATTTGGTTTATTCCTCTTCGGAAACCTAAACCATAAACTAAAGGGAAAAAGC
TAATCCTGTTTTTAAGCATCTTAGAATCACATACCATTAGGATTC
Right flanking sequence: Indices 702382 -- 702881
AGCTCTTGGTGAATCCGGACAAATGGTATCGAATCATCTGCTTTAGAAAGCGGTATTCTAGTATG
AGTTGTTGTAGTAAGGTCTATGCGCGCTTCGACCTTTCACGTTTTCTCGGCTTTTCCACTTGATG
ATGCTTACCCGCCTCAGCAAGAAGACTCTAATCGCAGCTCCTACTTGACGAACGAAACTCCTCTT
CGACCCAAGGCAAGATCGGAGAACTCCGCTACGATCATTCCCTGACTCACACTACAATGAGATTT
CGTATTTCACAGTAAAGCAAACCCTATTGAACCGATAGGAAAGTGGTAATGCCGATCCTCCTGTC
GACGAAGATGCTCTTGCTACACCATTGATGGGCGAACGACGGGAATTGAACCCGCGCGTGGTGGA
TTCACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTAAGCCCTAAGCCTTCTCCAACC
CCTAAGCCCTAAGCCTTCTCCAACCTCCGCTCCGAGCCCAAGCCA
Found at i:702844 original size:25 final size:25
Alignment explanation
Indices: 702810--702861 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
702800 GCTACATCCG
702810 CCCCTAAGCCCTAAGCCTTCTCCAA
1 CCCCTAAGCCCTAAGCCTTCTCCAA
702835 CCCCTAAGCCCTAAGCCTTCTCCAA
1 CCCCTAAGCCCTAAGCCTTCTCCAA
702860 CC
1 CC
702862 TCCGCTCCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.50, G:0.08, T:0.19
Consensus pattern (25 bp):
CCCCTAAGCCCTAAGCCTTCTCCAA
Left flanking sequence: Indices 702310 -- 702809
GCTAATCCTGTTTTTAAGCATCTTAGAATCACATACCATTAGGATTCCCATAAAGAAAAGCCATA
AAGAAAAAGCTCTTGGTGAATCCGGACAAATGGTATCGAATCATCTGCTTTAGAAAGCGGTATTC
TAGTATGAGTTGTTGTAGTAAGGTCTATGCGCGCTTCGACCTTTCACGTTTTCTCGGCTTTTCCA
CTTGATGATGCTTACCCGCCTCAGCAAGAAGACTCTAATCGCAGCTCCTACTTGACGAACGAAAC
TCCTCTTCGACCCAAGGCAAGATCGGAGAACTCCGCTACGATCATTCCCTGACTCACACTACAAT
GAGATTTCGTATTTCACAGTAAAGCAAACCCTATTGAACCGATAGGAAAGTGGTAATGCCGATCC
TCCTGTCGACGAAGATGCTCTTGCTACACCATTGATGGGCGAACGACGGGAATTGAACCCGCGCG
TGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCCG
Right flanking sequence: Indices 702862 -- 703361
TCCGCTCCGAGCCCAAGCCAATTCTAGCCAGCCTACTTTACCTTTCCCTCCCCCTTAGTTCTTGT
GTCGGCCCTTTCTTTCTACAATCCTTTCGCACTTCTCTTAAGAAATTCATAGTCTCAGATTCGAT
ACGGATTTATTGAGGAGTCATCTTACTTACGACATTCTTTTACATTAGGAAAAAGAAAACTTCCA
CGCTTTGATACCGTTCCGGGAACGAGTCACTAATTGCCAGCGAGTAGTCTGCCTAGCTTAGATCC
TCCTGATCTTCTTCCTTTATAAGACAGATTTGACTAAAAAAAGAGTCAGTCCACTTTCTTTATCA
TGAATCACGATTGGATTAGTCTCGCTATCTATCTCTAACAGGAAAAGCAAAGACCTCATCAACAG
TCCCGCATCTGATAAGGCAAAATATACAGATATGAATCGATATGGAATTCGTCCTCTCGTACTAG
GGCTAGGGGGATCAAAAGCAGGAATCCGCTCGTCATACTCTTAAG
Found at i:711249 original size:18 final size:18
Alignment explanation
Indices: 711226--711261 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
711216 GTCTATTATT
711226 CTCAGAGTTAACCAACTA
1 CTCAGAGTTAACCAACTA
711244 CTCAGAGTTAACCAACTA
1 CTCAGAGTTAACCAACTA
711262 TGTGCTGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (18 bp):
CTCAGAGTTAACCAACTA
Left flanking sequence: Indices 710726 -- 711225
TTATGAATATATTGTCCCACTTGCTGAATAAAGGAGTTGAATATGGAGTCTTCTCTTATCACTCT
AAATGCAAGTTAGTGAAGCTCACACATCTCAGTTTTGCTGATGATTTATTGATCCTCACTAAGGG
TACTTTGGAGTCTGTAGAGGGGATAAGAAATCTTTTGAAGATCTTTTATCAGTTTTCTGGATTAC
AGCTTAATTGTTCTAAATCTGAGATTTTTTACACTGGAATTTCTGCCGAGATTATTGATGAGATG
AAAGTAGAATCTGGCTTCAACATTGGTCAACTTCCAGTAAGATATCTGTGTCTTCCACTTGTATC
TAAAAGACTTAATGCTAGGTCTTGTCAGAGCCTCATTGAGAAAATCACCCAGATAATTCAGTCAT
GGACAGCCAAACACATTTCATATGCTGGCAGGTGTCAATTAATTCAATCAGTTCTGTTTACTATG
CTGAATCTTTGGTGCTTAAACTTCATTCTTCCTCAGTCTATTATT
Right flanking sequence: Indices 711262 -- 711761
TGTGCTGCAAGTTACCTATGGAAAGGGCAGAACAGCAAGAGCAAAGGTGCAAAGGTCAGTTGGGA
GCAAGTTTGTCACCCAAAATCTGAGGGTGGACTTGGCTTTAAAGACTTGCATTTTTGGAATAGGG
CCTGTATTATCAGGAACTTGTGGCTTCTATATACACAAGCTGGATCTATATGGCTTTCTTGGGTT
TCACCTTATATTTTGAAGGGGAGAGAGGTTATGGATATTCCCATCTTGCAAAGGTTTAGTTGGAA
TTTGAAAAAATTGTTGAAGTCTTGAGTATTTGTTGAGCAATTTATCCTATCAAGGAATCTTTATT
GGACTTTTGTAGGTAAAAAATACAGAGCAGCTGAGGTGTATGAGGCTCTTAGACATAAGCAGGAG
AAGAAGATATGGCAGAAGCTAATCTGCTTTACTTTACATGTTTCTAAATGCTCTTTTGTCTCTTG
GTTAGTAATCCTTAATAGATTGCCTACAAGAGATCGATTAGCACA
Found at i:716552 original size:21 final size:22
Alignment explanation
Indices: 716526--716572 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
716516 GCACAAAAGG
716526 AAAAAAGGGGGACAAGCCATCA
1 AAAAAAGGGGGACAAGCCATCA
716548 AAAAAAGGGGGACAAGCCATCA
1 AAAAAAGGGGGACAAGCCATCA
716570 AAA
1 AAA
716573 CTCCGTGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.53, C:0.17, G:0.26, T:0.04
Consensus pattern (22 bp):
AAAAAAGGGGGACAAGCCATCA
Left flanking sequence: Indices 716026 -- 716525
CGACATTAACAATCATGGAACTGAAAGCAAATTTACAGAATAAACTTTTTAACTTATTATTAAGT
GAACCTGATGCACGCCTTACCGAAATTCTCTCTCAGTCACCATTTCATGAAAAAAACATAAGATC
CGAAACTTACGACTTTGACTTTATCGAAGAAAGAGTCAGGGATCTTAATACACGCTCTCAGGCTC
AAAGGGTTTTCTTATAAAACTACCTACGGAACCTTATTCGTGATATCGAACAAAATGGTCATACC
TCAGCCGTTTATAGAGAATTCCTTAATCCTTGGAAACTAAACTGTTAGTTACAATACCTTCGAAA
TGTTACAAAAGACAGTTTTTTTGACTATTTTGGACTGGAGTTTTTTTGGACTGACAAAAAGTCCC
CCGAGAAAGCGGTGGAGGGGCTTCCGATCGAAAGAAAAGCAGGTATACCGCTTATGTTGATTGAT
ACTTTTCTGAGACAAGGCTTTCTTTGAAAGGGTGGGCACAAAAGG
Right flanking sequence: Indices 716573 -- 717072
CTCCGTGTGCCAGGTTAGTATGACTTGCTGAGAAAATCTCGTAGAACGACGGACGAAATCAGAGA
AAAAGAGAGAGAGAGAGAGGCAGTTCTTTCATTCGTTGGCCCGGAACTAGGTACAGCTCCATAAT
CGGAAGCGCAGGAAGCACAAAGAAGGATCGTGTAAGCTTGGTTAGCTAGAAGTTAGGGAACGAGG
CCCTGGTCTCTTACCGTGTGAGCGCCCGGGAGATAAGGGGTCGGTTAGTTAGCTGCGCAGAAAGC
AATCCACCTAAGGCTCTTCAAGACCAGATAAAGTCCATATGGCCTCGGTGATTAGACGAGGATAA
TATTCCATCATGCGCACCAAGGGATTAGGTTCTTTTTCTATATACGCAACCTCTGAGATAGAGGT
AAGATACATGTCACACTGGGTACGCCACTAACTGGAGAAAGGAAGTAAAGAAAGATGCGATTCCC
TGCTGAATGCTCACGGAACACTAACTTCAACCCCACGACCAGATA
Found at i:727574 original size:16 final size:16
Alignment explanation
Indices: 727553--727584 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
727543 AAGAACCTCT
727553 AATATGGATATTTTTA
1 AATATGGATATTTTTA
727569 AATATGGATATTTTTA
1 AATATGGATATTTTTA
727585 GTAGAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (16 bp):
AATATGGATATTTTTA
Left flanking sequence: Indices 727053 -- 727552
GCAACAAAGGACAAGACAGCCTAAAGGCATCCCCATAGACTTAGTCTAACCCCGATTTCGGATAT
AGAAAACCCCTAAAATATAGGACGGGGAGGTATGTTCTGTTCATTAAGCGATCTTGTCGACATTA
ATTTAATGTAGCTACGCGATGGAGCTGAAGGCATGGTTGAACCGCCTTCTCAACAGAGTAAGTAT
TAGCTGTTAATAGGACGTAGGAGAACTGTACGGAGGACTGCTCGCTTGACTGCCTTTGCTTTGAA
TGTAGCTTATGCCACAGGAGGTCATTCGGGTCATATTGAGAAGAGTGTAAGCAAGGGCGGCTCTT
TTCAGAACGGGCCTTCGGTCTCGGCTAGTGGATCAGCTAACCCATCGTCTTTGTAGCTAACCCTT
GCTCCGCATATATCAACACAAGTTCACGACCGACTTAGAGTAGCCAGTCTCGTAATTCATTCTTA
TCCTTGAGGACTTGGACCTTTTCTAATATGATAACAAGAACCTCT
Right flanking sequence: Indices 727585 -- 728084
GTAGAGTAAAGGCTCAGAGTCTACTTTTATAACTTTCAGCCAACAAAGATCCAATGTAAGTCAGA
CTTCCAGGCGCATCAGAATCTAATTGGACAGGGATCCTTTCTTCCACAGGCTTCGACTTATTAAG
CATCTGTTCATCTCTGTTATCCAAAGATTCCACAAAAAAGGGAGAGCAAAGTGGGGTATTTCACT
CCTGTATCCCTCTCCTGTAAGTCGAGCAACTTCGTATCGGTACGGTGAAGGCTACGAACTTGTAT
GACCAATGGCGGTTATAAGGCGACGAACGTTCTCAAGTGGTAACTTAAGGGAAATCAAACTCCCA
CTGAAGCAATGAAGTTAGGAAGTGACTTGATCTTCATCGCGCTATCACTAGAGGATTCGTATCTT
CGGCTGATAGTAGTCTTCGGGCTACGAGATCTTATGAGTGAAATTAGAGAGCTACGCAGCGAAGC
TATGTTAAACTGAATATTTTAAGAAATGGGGTGACCCAGCTAATC
Found at i:729040 original size:25 final size:25
Alignment explanation
Indices: 729006--729059 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
728996 AAATGCGGAT
729006 TATGGGTACTTAGTACTTATAATAA
1 TATGGGTACTTAGTACTTATAATAA
729031 TATGGGTACTTAGTACTTATAATAA
1 TATGGGTACTTAGTACTTATAATAA
729056 TATG
1 TATG
729060 ATACTAGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (25 bp):
TATGGGTACTTAGTACTTATAATAA
Left flanking sequence: Indices 728506 -- 729005
GTGGATCAAGGTGAAGCCTTATATGGCTAGACGAGACACATATCTGCCCTGAAAAGCATTCTAGC
TGAATAACGTAGGTCATGTCGTGAGATGTTTGGTGGAAAGATGAATTAATGCCAGTTTCCTTGAT
CAATAAAGGGATGAGCTTTCTTGTACTCACTATCCGTTAGCGGTATCGGGCCCTCGAAGACCCCG
GATGAACAACTCACACTCAGTTCTAGCGGTCCATTCAAGGTTTAATCCTCCATTTCTTTGACTTA
CTGCATCACATTTGACACCTAAGGAAGGGGAAGGTACAGCCCAACTATTTATGATTAATCTAGTA
TAGCTACGATTCAGGGGAATGTATTAGATGAGCGCCTCAAAAAGCCTTTGTTAGGGTTAGGCTCA
GTTAGGATCAACGGTTCAAGCCCTTTCTATTAAGTAAGACCTCGCCATCTTACTCACCGAAAGCC
CTATTTATTCATTCCTTCGAGTTCGTTCGTAAAGCAAATGCGGAT
Right flanking sequence: Indices 729060 -- 729559
ATACTAGTTAGCCTTTTCCTCCTCTTTCTTTGCCTCTCAACTTTCTTCACTCTCTTTCGTTCATG
TCTTTTGATATGGCGAAAAGGTCTTAGCAAGACTCAGTTTGTCTTTCCGCTCCTCGAGTCAACAC
CAAGGATCAATGATGTAAGAAAGAAAGAGGTTTCACTTCGAGAGCTGCATCACTGAACTTCTATC
CCGCATTGACAGCACCTTGTTAGGGACTAACCTCATCAAATAATCCCATAATAATCCCATGCGGA
CTGGATTTGTCGAACTCTGCTAAGGTGGTATGGCCTTGAAGCGGGTGTCTTGGTTCTGCAGCCCG
GCTTGGTCTATCGGCCCAGCTCTATAGTTAGATTTCCAAAGTTACGAGTTGAAATCGAACTGCCC
CTCGCAGAGAACTCTAAAAGGCCACTAATACTAATAATGATAATCCATTTCATTCACGCATCACA
GTTGGAACCCGTTTTCCAAGCTTTTCCGCCTTATCTCTAAAGAAC
Found at i:729660 original size:24 final size:24
Alignment explanation
Indices: 729628--729675 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
729618 CCAATCCATG
729628 GATAGAGGAAGACTAGGATTATGC
1 GATAGAGGAAGACTAGGATTATGC
729652 GATAGAGGAAGACTAGGATTATGC
1 GATAGAGGAAGACTAGGATTATGC
729676 TTCTGTCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.33, T:0.21
Consensus pattern (24 bp):
GATAGAGGAAGACTAGGATTATGC
Left flanking sequence: Indices 729128 -- 729627
TTTGATATGGCGAAAAGGTCTTAGCAAGACTCAGTTTGTCTTTCCGCTCCTCGAGTCAACACCAA
GGATCAATGATGTAAGAAAGAAAGAGGTTTCACTTCGAGAGCTGCATCACTGAACTTCTATCCCG
CATTGACAGCACCTTGTTAGGGACTAACCTCATCAAATAATCCCATAATAATCCCATGCGGACTG
GATTTGTCGAACTCTGCTAAGGTGGTATGGCCTTGAAGCGGGTGTCTTGGTTCTGCAGCCCGGCT
TGGTCTATCGGCCCAGCTCTATAGTTAGATTTCCAAAGTTACGAGTTGAAATCGAACTGCCCCTC
GCAGAGAACTCTAAAAGGCCACTAATACTAATAATGATAATCCATTTCATTCACGCATCACAGTT
GGAACCCGTTTTCCAAGCTTTTCCGCCTTATCTCTAAAGAACAAAGAAGGGTATTCATAGATAGG
TGAGCTGCAAACAACTAAGGAAGGCTCATGAATGACCAATCCATG
Right flanking sequence: Indices 729676 -- 730175
TTCTGTCTGGTCGTACTAGGCCATTAAGGTCGTCTCACTACTTATTATGTTAGTATGTGAATTCC
AAAGGAAATCCCGCGCATTTAGATAGTTGAATCTCATCAATAGAGAGTTCATTATAAAACAAAAG
AATGGGTGCTCATTCAAAGGAATGTTTGCTTTTACATCTATTACAAGCGGAGGAGTTGGCTCAAG
ACATCTTACCGTAGAAGAGTCAGAGGTCTTTCGACGGATGGTGAACAATTACCCCTTCTGTGTAC
GATGCAATCCTTTTTCGGCACGTCGATAGCGGATGCTAACCATCGGAGGGGGAACCACGAATAAG
GAGCAAACCTTCTTCTGCATGAAAGTTGGTTCAGTGACCACATAAAAAGAGAGCTCAGAAGAGAA
AGATCTCCAAACCGGTTATTTCTTGGGGGAATATTGTCGTATAATAGGAAGCACGAAAGCGCGAC
TGGCTCTCAGCCCAAGCCCAGAAACTACATAATCTTAGTAGCGGT
Found at i:730925 original size:21 final size:21
Alignment explanation
Indices: 730900--730942 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
730890 AGGCAGCCTT
730900 ATAGAGATAGCGAGTTACATA
1 ATAGAGATAGCGAGTTACATA
730921 ATAGAGATAGCGAGTTACATA
1 ATAGAGATAGCGAGTTACATA
730942 A
1 A
730943 GGATTCACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.23, T:0.23
Consensus pattern (21 bp):
ATAGAGATAGCGAGTTACATA
Left flanking sequence: Indices 730400 -- 730899
CAGAAGAGTCTGACGAGGTTTGTGACAAAGGTAAGAGGGAGTTGTCGCCTGGTTGATGATTGTTT
AAGGGGCTAAAGACTTGTTGTCTTCCTAGCGGTTAAATATCTTAACTAATTTTATAAAGAAGTGG
CTATCTCCTTGTCCGTGGAACACACAAAGCATTGAAAGAAGAACACAATGGGAGGGAGTGATCCA
CAAGAGGAGCTCTTACTTATACTTTCAGAAAGACTCAGACTGCCAAGGATAAGGGAAAGAGACTG
ATGCTACTATACAATACCAGGTACGGGTGAATCATATCGAGCGAAGAACCTACCTTGCTGTCGTA
TCGAAGCGATCGGAAAGGAATGGCGAATTGCTATCGCTAGTAGATGGTTCCCCTTTTGACAGGTA
GGGGCTGAACCGTTACTAAAGGAAGCCCGTCAGCAAACCCGTAAATTGCGAGTGTGTGAGTGATA
CTAGAGTAGAGCTCTTCCGATGCTGAGATGAGGAAAGGCAGCCTT
Right flanking sequence: Indices 730943 -- 731442
GGATTCACTCCTCAGTTAAAGCTTTCCCCAAAACAAAAGATAGGGGATCAGTTCAATCGGTGCTC
GAGTCGGGGGTTCATAATCTTTACTCCCCAGGGTAAGAGAAGCTCTATCCTTTTTCAACCGAAGG
GTTTAAGGAGCTATCAATCTCTTCCATCATCAATAATGAAGAACTCGCTCGAAACGAAAGCAGAA
GGTCAAGCAGTGAGGCTTAACACTGATGGCCCATCTCATAGGGGGTCTTCTTCGGTCACATGAAG
GGCGCTGGCTGGTGGGGTTTCTCTTCGAATGGCAGGTTCTCGGTTGCTTCGGCTTATTCCGCTAT
CATAAAGCAGGCCATCCCCCAGGACGCAGTCGACCTCTCGTGGGTGTGGAGGTTGCATGTGCCTG
AAAGGATCCGTTTCTTCCTCTGTAACTTGGAAAAAGGTAAATTGAATATACAAATTCAGTACGTC
TTAAGGATTGACGTCAAATGCTTGCTGTAGTTTCTGTCTTGATCT
Found at i:734229 original size:25 final size:25
Alignment explanation
Indices: 734195--734244 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
734185 AGGGACCTAT
734195 GTCTTTCAGTATGACTGATATCTTC
1 GTCTTTCAGTATGACTGATATCTTC
734220 GTCTTTCAGTATGACTGATATCTTC
1 GTCTTTCAGTATGACTGATATCTTC
734245 ACGGGACCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (25 bp):
GTCTTTCAGTATGACTGATATCTTC
Left flanking sequence: Indices 733695 -- 734194
AGCAGAGAGAGCCCTTTCCTACTTACTACCAAAGAATAAAGTCCACCAATGAAAGAGAAAGGCGC
ACAAAGAAAAGAGTAGTTAATACATACACTTTCTATTAACAAGTCATATGGATTAGTAAGGATCA
ACTGGGAATAAAACTCAACGTTGCAAGCTCAAAAAGTGATCCTGGAAGGCCCACTTCTCAAAATC
TATGTCAGTCTATTCTTGCAACGCTTGTTGGAAACTAGCTATTCTTATAACAGAGCAGCCTCTAT
TTGGGTAAGCAAAGATTCAAATTCGAGATTGGCAGAGAAAGGGCACGTACGAGCACGAACAAAAG
GAAGGAATGAATCACTCCATCTACCAAGAACTAGCTAATATCTGGATTATCCGCTAAAGGTTTGA
TTTGAGGCTCACCTTCTCTTTATGAAGCAGAGGAGGATTCGGCTGCAGGGAGGAGAAAGACACAT
AATAGGATATTATATAGAAGGTATGATGGGGAAAGAGGGACCTAT
Right flanking sequence: Indices 734245 -- 734744
ACGGGACCTAGCATTAGCTTATCTGCCTTTGTTCGCTGATAAGCTCTTCGACCCTATCCAACTAG
GTGCAAATGCTTCCTATTTTATAACTACATTGAGGGCTTTGTCCATGCCTAAGATTCCCCACCAC
TTTACTGGTCCCTCAGACAGATTGTATGCTCTCTCTCTTTGCTAGCTGAACCTGAACTCGCTTGA
GGTTGCTTTCGGTCTTGATTGCGAGGTCGGTAATCGTATTCCTCTCTCCTGAAAAGGTGTCGGAA
ATGGGAGTTCGCTTCTATTCCGCTATCCGTCTCGAAGAAAAGTTATGATTATATCAGATTTGGCG
GTCAAGACGAGGGCGCATCCATACTATCCCACAGCGGTCCACCTTCTTTCTTCATGCCGGGCAAG
CAAGGGATGCAGATGAGAGGGATGTAGTTACTTGCTTTGGGATAGCTTATGTAATCTGATCTTCA
AGAGCGGGTTACTCACTAGAAAACTTATTCTATGGCAAACCTCGT
Found at i:741073 original size:26 final size:26
Alignment explanation
Indices: 741044--741093 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
741034 TTAAGCCCAA
741044 AGAAAAGACAAACATTTCACTCGGAT
1 AGAAAAGACAAACATTTCACTCGGAT
741070 AGAAAAGACAAACATTTCACTCGG
1 AGAAAAGACAAACATTTCACTCGG
741094 GTTCTGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.46, C:0.20, G:0.16, T:0.18
Consensus pattern (26 bp):
AGAAAAGACAAACATTTCACTCGGAT
Left flanking sequence: Indices 740544 -- 741043
TGGAGCTTATCTCTTCAGCGGATATAGCAACTCATACACTGGGATGTCTTATTTCCGACATCAAG
GAGCTGCAAGCTAGGGATTGGGCGTCTTAGTTGAAGCATACATTGCGATAGGGCCTCTTCCGATT
TCCTGGCCAAAGCTGCGTGTGAAATGGAGATGTACCTGTAAATTCTTCATCAGCCGACTGATGGC
ATTCATCGCTTGCTTTCTGCAGATACAAGGTCTTGGCATAGCCTCGTCGTGGTTTTAAATTTAGC
TAGCCTTTGTCCTATTCTCTTGTAACCAAAAAAAGAGAGGGAAGGGACCTATAAGAGCTCATTCA
AGTGCTTGCATACACTAGATCATCGTTCACCCGCATCGCTTACAAACCAACGAAAGATCAAGGCT
GATGACGAGCTGAGCGGGTCCATAATGGAACAAAGAGGATGACATTGTAGAAAATTGGGAGGCGG
AGTCGGATGATGAGATTCGGGCGGGGTACAAGTCTTTAAGCCCAA
Right flanking sequence: Indices 741094 -- 741593
GTTCTGTTCACCAGTTAGGGAAGTAGCTGGCAAGAAATTACCTTTTTTCAGGTACAGATGGGATT
CTCGTTCAGCTACCAATCGTATCGGCTCATCCCCTTTCTTTTCACTTCTTCCGCTTTTCTTTCTT
GTTAGCACGAACGGGAAAGTCCATGAGATCGGTCTAGAGATAGGGGAATTGTTACCGCTGCTAGG
CAAGTTCATCTGTCTTTAACGGGTCAAGTTAAAGCTCTTTCCCTCAACTTGCTAAACCAATTGCT
TGAACTCCTTCGCACTTGAATCATCTCATAACCTTCATTTACTATACTACTCGATCGAAGAACCT
ACTTTGCTGTCCTATCGAAGCGATCGGGGTAGACTTAAAATAAAAGCCCGAACCAAGAGAAATGG
CTTCATACCAGCTCGAAAGCCGGGTAAAACGTTAAAGGTTTCAGGGAGATAGTGCATCAAGCTCT
TCCCCAGGATCAAACTCTTCTTTTTTGGGTAGAAAGGTCGAGCCT
Found at i:743897 original size:21 final size:21
Alignment explanation
Indices: 743873--743915 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
743863 AGGTAGATTC
743873 TAGTTTTTCTTATTTATTCGT
1 TAGTTTTTCTTATTTATTCGT
743894 TAGTTTTTCTTATTTATTCGT
1 TAGTTTTTCTTATTTATTCGT
743915 T
1 T
743916 TAGATTCGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.67
Consensus pattern (21 bp):
TAGTTTTTCTTATTTATTCGT
Left flanking sequence: Indices 743373 -- 743872
GACTGCTTCCTCTTCAACTCTCGGTAAGCGGATCTTAAGGTGAACGAACAGAGCTCCGTAGCTCA
AGTGTCCAAGAGCGGTTCAAGCGCGTAGAAGGAAATTATCTGATCCGTACTGAAAGAAGGAATGA
ATGGTCAGTAGGCTAGCAATGAAGTAAGCAAAGAAGTAAGGAAAGACATCGATATCAACATGGTG
AAAAAGAGTCTCTCCTGAAGGCTCTTTGAAACCTCACCTCTTTCAGTTGGTTTTTTGATGAGATC
AATGGCATATTTCTTAATCAATCTCATTCTTTGAAGAAAGCCCTTTTAGGTTGCCATCACTTAAG
CACCCTTCCTTTGAGCCAGCCTATCGGAACAGCTCGGGGTCGCAGGTGGTTCTCGTACGTGTCAG
TACCAGGTGATGAGGTAAATATTACTGTACTACCCCTTGTTGGTCCCGAGGCACAGAGTAGGTAG
AGTTAGACTTTTCGAGCTATCGAGTTAAGGCGAAGAGGTAGATTC
Right flanking sequence: Indices 743916 -- 744415
TAGATTCGTATATTCTATTTATATCGTATAGTAAGTAGTGAATCGAATTCAACTCAACCAGATTT
AAGGGGGGGTGGAGTCTTCTTTCCCGAGAGAGGCCACTAGCCAATTAACTGACCTTCCTCGTCCT
AGTCCAGCTCAATCAGATGAAGACAAGAAAGCAAGTCAAGAGGAAAGGAATCCTAGCATTTGAAT
TCTCAGAGTCTAGTCGAAACTAGAGCTAGGGGGCGATTGGCTATGTCACCCCAGCGTATATGTAA
GAGGTGCGAGCAGTAAATGCGGATTATGATGTCTACGCATGAGTAACTTCCTGAATCAATAACCA
GAATCAATAAGAGCATAAAGACAGGAGGTATTCTTGGATTCATTCCTTGTTGTATATCTCAAGGT
TGAAGACAGACTATCACACTTGAGCTGCTGAAAACAATTTATGAATTACCCGAGGAAGGTAGCTC
AAATGCTGGCTTAGCCGCGGGAACTCTCTTCAAAGGCTTAACTGC
Found at i:743916 original size:17 final size:18
Alignment explanation
Indices: 743869--743916 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
743859 GAAGAGGTAG
743869 ATTCTAGTTTTTCTTATTT
1 ATTCT-GTTTTTCTTATTT
743888 ATTCGTTAGTTTTTCTTATTT
1 ATTC--T-GTTTTTCTTATTT
743909 ATTC-GTTT
1 ATTCTGTTT
743917 AGATTCGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.15
19 4 0.15
21 19 0.70
ACGTcount: A:0.15, C:0.10, G:0.08, T:0.67
Consensus pattern (18 bp):
ATTCTGTTTTTCTTATTT
Left flanking sequence: Indices 743369 -- 743868
GCGAGACTGCTTCCTCTTCAACTCTCGGTAAGCGGATCTTAAGGTGAACGAACAGAGCTCCGTAG
CTCAAGTGTCCAAGAGCGGTTCAAGCGCGTAGAAGGAAATTATCTGATCCGTACTGAAAGAAGGA
ATGAATGGTCAGTAGGCTAGCAATGAAGTAAGCAAAGAAGTAAGGAAAGACATCGATATCAACAT
GGTGAAAAAGAGTCTCTCCTGAAGGCTCTTTGAAACCTCACCTCTTTCAGTTGGTTTTTTGATGA
GATCAATGGCATATTTCTTAATCAATCTCATTCTTTGAAGAAAGCCCTTTTAGGTTGCCATCACT
TAAGCACCCTTCCTTTGAGCCAGCCTATCGGAACAGCTCGGGGTCGCAGGTGGTTCTCGTACGTG
TCAGTACCAGGTGATGAGGTAAATATTACTGTACTACCCCTTGTTGGTCCCGAGGCACAGAGTAG
GTAGAGTTAGACTTTTCGAGCTATCGAGTTAAGGCGAAGAGGTAG
Right flanking sequence: Indices 743917 -- 744416
AGATTCGTATATTCTATTTATATCGTATAGTAAGTAGTGAATCGAATTCAACTCAACCAGATTTA
AGGGGGGGTGGAGTCTTCTTTCCCGAGAGAGGCCACTAGCCAATTAACTGACCTTCCTCGTCCTA
GTCCAGCTCAATCAGATGAAGACAAGAAAGCAAGTCAAGAGGAAAGGAATCCTAGCATTTGAATT
CTCAGAGTCTAGTCGAAACTAGAGCTAGGGGGCGATTGGCTATGTCACCCCAGCGTATATGTAAG
AGGTGCGAGCAGTAAATGCGGATTATGATGTCTACGCATGAGTAACTTCCTGAATCAATAACCAG
AATCAATAAGAGCATAAAGACAGGAGGTATTCTTGGATTCATTCCTTGTTGTATATCTCAAGGTT
GAAGACAGACTATCACACTTGAGCTGCTGAAAACAATTTATGAATTACCCGAGGAAGGTAGCTCA
AATGCTGGCTTAGCCGCGGGAACTCTCTTCAAAGGCTTAACTGCT
Found at i:745814 original size:11 final size:11
Alignment explanation
Indices: 745798--745823 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
745788 CGAAACTAGC
745798 CCTTTAATTTT
1 CCTTTAATTTT
745809 CCTTTAATTTT
1 CCTTTAATTTT
745820 CCTT
1 CCTT
745824 ATTAGCAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (11 bp):
CCTTTAATTTT
Left flanking sequence: Indices 745298 -- 745797
CACTTTTGAACCGTAGCAATTGCTCATGTTCACGAGAAAGTTCTTGATGCGACCGGCAGGCAGAT
GAGATCTTAGCCAACATGGACCGGCCACAGGGGCTTTTTCTTGCTTTCTTGATCGATCAACTGAA
GGGAATCCTATTAATTATATAGGTTCAATTTCTTTATGTTCGTTGAGCTATTGGACTGTGTTTTT
CATTTCGATTGATTCGTATCCCTAAAATAAAAGGTAAAAAAATCTCAACATTGTTGTGGTGCCTA
AACCCTTCGTTCCTTCTACTTCAATTGGATCTTGAACAACAAGAAGTGCGAACGGATATTCTACT
ATGAATTTTAGTAATTCCATGCCTTTCGGCTCCGGCATCTCTCTATGGGATCGGGGTTTTAAACA
ATGGGGGCAGAAGTAGCTGAAATAGAGTTGCCTTGTTAAGAGAATCACTGATGCTTTACATGTGT
TATCGTTAGTTTGAGGAAGTTGTTGACCTGCCCGGCGAAACTAGC
Right flanking sequence: Indices 745824 -- 746323
ATTAGCAGAGATAGATAATGAGAACAATGTTCTCTTCCGGCTTAGAAGAGGAAGTACAAAGGGTC
AGGTGAGTCTAGGATAAAGGCTTTTTCGCTCGAGTCTTGTTCAAAAGTAGAGTGGGTCCTCTTAT
ATTTACCGCTTTGTTTATTTCGATCGGACCCTTCTTTGTTTATTTCGAAATTGAGAAAATTTCAT
CAAGGAGAATCCACCGACTGGGGCCGGTCGGATGAAGTCAGTGCAGTTGTAGGCCGCTAGCCTGT
GGATTTGTTCTGGAGCTGCAGGCTGCATTAAGTCCTCAAAAGGCGTACCCTCTCCCGGCGATAAG
AGAAAAGGATGATCGCTCCAGGCCTGTCATCGACTTGATCGAGCTAAATGGAAAGCCGATGGAGG
TCGAAGAGATCAACTCAAAGCCCCATAGAATAAATAAGACGATGTGATCCTAACCAAGCATATCT
CACTGGGCTACGCGCTATGTGTCAGGCCAAGACCTTGAACCATAA
Found at i:752267 original size:22 final size:22
Alignment explanation
Indices: 752239--752284 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
752229 ACTACCGCCC
752239 TTATTAGGAAGAGCAAGAGTAG
1 TTATTAGGAAGAGCAAGAGTAG
752261 TTATTAGGAAGAGCAAGAGTAG
1 TTATTAGGAAGAGCAAGAGTAG
752283 TT
1 TT
752285 CCCCTTCGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.30, T:0.26
Consensus pattern (22 bp):
TTATTAGGAAGAGCAAGAGTAG
Left flanking sequence: Indices 751739 -- 752238
TGTAGAGTCCGCACTTCATGTAGGCAGTCTTTCCTTCTCCTTTTCCTGCTTCCCTTGATTCGAGT
ACCTCTTTTCATCGCTAGATTGAGATCTGCAGGGTTGTCAATCGGGTTTTGCTTGACTTGACTTA
CTTTTATTCATCACCTGGAGCAGGAATATAACCATCAGTTCCCGTTACCTAAAGAAAGGTAAGGC
CCGGACCAGACGTAATGAAGATTCAGAGATGAACAAGTCTTTAAGCTTTGGCTCGTACATCAACT
TCGCACATCAACTTGTTAGTCAGGAGATCGACTTGTTGTCTTGTTGTCTTTTTCTGATATGCGCA
ACCGTTTCAGGAGGGAAGAAGTTGATTCCTGACCTCGCACTCAATAACCGAACCCCTTGCACTAG
ACCTGTTCATTAGCAGACCTCTTCCTTAACTTGAGGCTATCTAACTTGGCTATCTCTCCAGGCTA
TAAAGAAAGGTAGGAAAGTTAGGAAGGCTATCTCGACTACCGCCC
Right flanking sequence: Indices 752285 -- 752784
CCCCTTCGGTATCCCCAGGAAAAAAGAGAGAAAAAAGACCTGTTCGCTGGGCCCTATTGAAGGAG
GGCTTGTTAGTGTCCGTGTCTAGGCTGCCTATCGATCGACCGCTCGCCCTTATCTGATTGTTTAT
TCGGCCTTTAATTAAGTATGAGCGTATGTCCCTTTCTCGAATTTCGGATGCAGATTCAATTCATT
TTCTTGGCTTAGAAGCCCTTTTCGCTTCTTACTCAAAGGGGAGCTCTTCAGTCAGACTACTTGAA
AACCCGGTATTACTAATTGAATATCGAGATTCCTATTCGTAAGTTGATGATTTAGTTTTTCGAGA
GGAGCTTCCTTATGATTAGATGATTCAGAATGGTTAGCGAATGAGGATAGCCCCATAATAGGAAA
GAGCATCAAGACCAACCATGACAACAGCTAAAAAGTCAAGTGCAGTTGCTTATGTAATGTAAAAG
TGGTTTTCCTTTCAATCCTGGAAGTTTAAAAAGAAGCTTCTACCT
Found at i:754002 original size:25 final size:25
Alignment explanation
Indices: 753968--754015 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
753958 AGACATACCC
753968 ATCATAATCTAGTAGATTGACTTGA
1 ATCATAATCTAGTAGATTGACTTGA
753993 ATCATAATCTAGTAGATTGACTT
1 ATCATAATCTAGTAGATTGACTT
754016 AAACCTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (25 bp):
ATCATAATCTAGTAGATTGACTTGA
Left flanking sequence: Indices 753468 -- 753967
GAGTCCCTATAAAAAAAGGCTTTCTTTAAGAGCTACAGGTTTCGTCCCGTTCACCAACACCAACG
ACTAAAGGCTCACCCACGGGAAAGACGTCTGAATGCTTATTGAGTGCAAATTGATTGTCTGCTTG
AGTAACCGAAAGCCGATACCGCTAGAGAAGCTGCTCCTGCTCCTGCTACTAAATCTACTTGAGCA
AGGGAATGAAGTATTGGATTTGCAGTACAAGTCATCAGCAAGGAGTAAGTATGCAGATGAATCCC
TTTATTTCGTGTCCGTTCTTCAAAGGAAATCGATTCACTACCGAGTAACAAAATCCCAACACAAC
AATTGAACAATAGCCCACTGAGACTTTCTCTCTTGCTGGCTTTAGGGAATAAGTTTACCATTTCC
TTTATCCGAAACCATTAAAGACACAGAAACTGACTAGACAGAAGAAACTATAGCAACAGCAAAGG
AAGAAGGGCTTGCATCTCATTTAAGTCCGTTCGAAAGACATACCC
Right flanking sequence: Indices 754016 -- 754515
AAACCTTCTAGCGCGCGAGTGACTGATGGTGCTGAGAAAGAGCGAAGCGAGTCAGCCATATGTAT
TGATCAACAAAGAATGACCCCGATACTGATTGAACTTTCTATGGCCAACAACCCCAAAGCCTTTC
GGCTCACCTTCTTTTCCCCCAAAGCCTTTCGGCTCACCGATAAACCCCATTCGCTGCTACGCAGC
TCACCTCTAAAGACCCTTCGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAA
CCTTGCGGAGGAACTCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGC
CGACATTCTCGCTTCCGCTTCGTCTACTCCCGCTCGTGCGTGCGCTTCCCCCTAAGGCGGAACGC
TCCCCTACCGATGCATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCGT
CGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG
Found at i:757479 original size:25 final size:25
Alignment explanation
Indices: 757445--757495 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
757435 GTTGATCCGG
757445 TGTTTTCTTTGCCACCATCTACTTC
1 TGTTTTCTTTGCCACCATCTACTTC
757470 TGTTTTCTTTGCCACCATCTACTTC
1 TGTTTTCTTTGCCACCATCTACTTC
757495 T
1 T
757496 CATGACTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.12, C:0.31, G:0.08, T:0.49
Consensus pattern (25 bp):
TGTTTTCTTTGCCACCATCTACTTC
Left flanking sequence: Indices 756945 -- 757444
GGAATAGGCTCGCTCTGACTTCGACGGCTAGTAAAGAGTCCTAGTTGGACGATTGGAGTGGGTGG
TGGTCTTTTAGGGCTGAAAAGGCGCAGTGTCATAGCTTTGTTTGGGCCCTTCCTTGCCCCGTTCA
CTTTGGTTTGAAGCATATTCTACAGCGATTTATCTTAGAAATCGTCTTCCCACTCCAGTTCTAAA
TGGTTGTTCTCCATTTGAAAGATTATTTGGTACAGTTCCGGAGTACAAACACTTTAGAGTTTTCG
GTTGTGCTTGTTATCCTTATCTAGTTCCTTATAGAAAGGACAAACTTTCTCCAAAATCCAAATGA
TGTGTATTCTTGGGCTACAGTTCTTTACACAAAGGATATCGATGTTTGGACTCTTCCACCGGTCG
TATTTATATTTCTCGTCATGTAGTGTTTGATGAACATTGCTTTCCCTTTGCAGAACGATCAGGTT
CTACTGCTCCGGGACTTCTACCTAATCCTTCTGTTGTTGATCCGG
Right flanking sequence: Indices 757496 -- 757995
CATGACTGCAGTAGTACTGTAAACCTTCCCGTTCAGCCCTTTAAGGAGGTTGAAGATGTGAATGA
CCGTGCCGAGCAAGCAGACATTACAGAAAATGACCATCATTTTGACCATCATTTTGAAGCGGTTC
CTCTTCTTACTGATCTAGATGCTCCAGTCACAGATGATTCCATCCCATCGACCACAATAGCACCA
TTATCTCAACAAGCGGTTGACCCTTCGCTTTCTACTTTAGGTTCTACTCACCCAATGGTGACTCG
TAGCCGTGACGTTACTCGTCGACCTAAAGTACTTTACTCATTACATGCCGCTACTTCAAAAGGGT
TGGTTTCATCTTCATCCTTTGAACCAACATCGTTCAAAGATGCTTGCAAAGATAGTAAATGGATT
TCAGCCATGAAGGAGGAATACGCAGCTCTTTTAAAGAATGGTACTTGGTCACTAGTTCCAAAAGC
ACCAAACATGAACATTGTTGGCTGTCGGTGGATTTACAAAATCAA
Found at i:757608 original size:12 final size:12
Alignment explanation
Indices: 757591--757617 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
757581 TTACAGAAAA
757591 TGACCATCATTT
1 TGACCATCATTT
757603 TGACCATCATTT
1 TGACCATCATTT
757615 TGA
1 TGA
757618 AGCGGTTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (12 bp):
TGACCATCATTT
Left flanking sequence: Indices 757091 -- 757590
ATTCTACAGCGATTTATCTTAGAAATCGTCTTCCCACTCCAGTTCTAAATGGTTGTTCTCCATTT
GAAAGATTATTTGGTACAGTTCCGGAGTACAAACACTTTAGAGTTTTCGGTTGTGCTTGTTATCC
TTATCTAGTTCCTTATAGAAAGGACAAACTTTCTCCAAAATCCAAATGATGTGTATTCTTGGGCT
ACAGTTCTTTACACAAAGGATATCGATGTTTGGACTCTTCCACCGGTCGTATTTATATTTCTCGT
CATGTAGTGTTTGATGAACATTGCTTTCCCTTTGCAGAACGATCAGGTTCTACTGCTCCGGGACT
TCTACCTAATCCTTCTGTTGTTGATCCGGTGTTTTCTTTGCCACCATCTACTTCTGTTTTCTTTG
CCACCATCTACTTCTCATGACTGCAGTAGTACTGTAAACCTTCCCGTTCAGCCCTTTAAGGAGGT
TGAAGATGTGAATGACCGTGCCGAGCAAGCAGACATTACAGAAAA
Right flanking sequence: Indices 757618 -- 758117
AGCGGTTCCTCTTCTTACTGATCTAGATGCTCCAGTCACAGATGATTCCATCCCATCGACCACAA
TAGCACCATTATCTCAACAAGCGGTTGACCCTTCGCTTTCTACTTTAGGTTCTACTCACCCAATG
GTGACTCGTAGCCGTGACGTTACTCGTCGACCTAAAGTACTTTACTCATTACATGCCGCTACTTC
AAAAGGGTTGGTTTCATCTTCATCCTTTGAACCAACATCGTTCAAAGATGCTTGCAAAGATAGTA
AATGGATTTCAGCCATGAAGGAGGAATACGCAGCTCTTTTAAAGAATGGTACTTGGTCACTAGTT
CCAAAAGCACCAAACATGAACATTGTTGGCTGTCGGTGGATTTACAAAATCAAAGAAAGAGCTGA
TGGGACAATTGAGCGGGCGCGATTGGTGGCTAAGGGATATACACAACAAGAAGGTATCGACTTTG
ACTATACCTTTAGTCCTGTTGTTAAAGCTACAACTATTCGAATTG
Found at i:763558 original size:25 final size:25
Alignment explanation
Indices: 763524--763573 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
763514 TGGTATCGAG
763524 AAAAGCCTTATTCCTTCTGTCCTAC
1 AAAAGCCTTATTCCTTCTGTCCTAC
763549 AAAAGCCTTATTCCTTCTGTCCTAC
1 AAAAGCCTTATTCCTTCTGTCCTAC
763574 GACGGAGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (25 bp):
AAAAGCCTTATTCCTTCTGTCCTAC
Left flanking sequence: Indices 763024 -- 763523
AAAGGAGAAGGGATTTCTTAATAATATAATGGAGACTGACTCGATGGTATTACATAAGGCCATAT
AGGAAAATGATGATACTGTAATTTGTGACATTAGCATCGAGAAAGAACAATGAATCGTCAGCAAA
CAATAAGTGTGACAGCTCAGGGCAACTCCTAGTAATAGGAACACCAGAAATGGATTTAGAACCAA
TTCCTACTTGCATCAACCTAGACAGGGCAAAAATAACTAAAAGAAAAAAAAAGATAAGGGCGAAG
AAGAACCTTGCCTAAGACCTCATTCAGGATGAATACTTCTACTGGACTTACCATTTATGACCAAA
CAATAAGAAGGGGTACGCACACACTACAAAATCCAATCAGCCTCGGTTGGTGTTCAACTGGCTCA
ATTCATCACGGGTCCTACCTCTCTTCCTTTATTAGGACCATTTCTCCCAGCCCTTATTATTAGTG
TGGTAACGGCCATTTCTTTTTCTCTATCTGTTTGCTGGTATCGAG
Right flanking sequence: Indices 763574 -- 764073
GACGGAGGATGAGGTTCCGAACGAAGGTACGACCCTATCCAATCATCTTTCTTTTCTATGTAGTC
TGTCGCTATGCCAGTCTAGTGGTTGGTAAGGAGAGAGAGTCAATGTGCTTGGAAGTCTGATACTC
TTCGATCTATTCCAATCGGCTATGGTTCTATCTTCTTTTTTCCTATGGAAGTAAGATCATCACCT
GGCTTCACCACATGACTTTCCTCAGTAGGTCTTGAAAATCAAAAAAAGCATGATGACTACTTTCC
CGGTGGTGAAGTTATGAAGTCTCTTCTTACTCATAAGCCGTCGGCCAGAAAAGCCAAGATTTCCA
TCTTCGATCGGTGCCGCCTGAGGGTTGGGCTGTTAAATTGAATACTTTAGGAGCTGAAAAGGGGA
ATCCAGGGGTAGCTCGTGCTGGAGGCTTAATAAGGTCGTTTGTGGGGACTTGGCTAATGGGTTTC
AAACAGCATTTAGGTATGTATTTCTTCGAATGTTGAAGCAGAGCT
Found at i:771934 original size:20 final size:20
Alignment explanation
Indices: 771909--771948 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
771899 AGATTTCTAT
771909 GAATCAATATTCTAAATAGG
1 GAATCAATATTCTAAATAGG
771929 GAATCAATATTCTAAATAGG
1 GAATCAATATTCTAAATAGG
771949 ACTGGGCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (20 bp):
GAATCAATATTCTAAATAGG
Left flanking sequence: Indices 771409 -- 771908
CTTTGACTGACCCTCTTACTTCTGACGAAAACCTTTAGATAACATCTGCCACAGGAGTACATACC
ACAACACGTCTTTACTAAGGAGCCAATTGAATTCGGCTGGAGACCCTTAAAATAGGGCTTTCTTT
ATTCCATTCCGACAGTTCCTTGCCCCCGTCCTTGGGACTGGACTGATGACTGCTACCTCTACGCA
GGCTCGATGACTGCTTTTTCTGCTGCTTACCCTGATCCGGTCCACTTCTTAGCCAACCTAAGAAC
CAACTCACTTTTGAACTGAACCCTTTCGAGCCGAACAGTTCTCAGATCTTACCTTCCAAACCGAA
CTCAACGCGGAGGAGGAGGAGAAAAGGTAAGGCTAGTAGCGTCAGGCTTTACTCAAACATATGTA
ATTGATTACGAGGAAAGGAAGCCCGAGTAGCCAAGATGAAGTCTCTTCGTCTACATGCTAAGAAT
TTCTTGCTTCCGGACCGGCTTTTGAGGGTGAGCCCAGATTTCTAT
Right flanking sequence: Indices 771949 -- 772448
ACTGGGCTAATCAAGCCAAGGAGACAAAGTATGGAGTTGAGAGAGAAGGAGCTTTTCGAAGCTTT
ACTTTACTTAAAGTACGATATTCCTTACTTGGGATTCTCATCTATTCTCATATAGATTCTGGAAA
AATCCTTTTGAAATATAATAAACCATGTCTGAGCTGACAAATCAAATCCTTCCTTAGTAAATGAT
ATCAGTGATCAGGCCACCAAGAGGGTGGAGCTTCTCATTTGCCTCCGCGATGAGATCAATCACAC
CACTTTGGCATCAAGCTCGCAAACAACCTTTCTATAACCTTCTTGACAAGCCAGAATCAAAGCCA
GTCGAAGTGCCTACAACTCCGGAACCATATTTTTAGAGATCGCCAAATTTGCTTGAAAACCACAG
AGCTAAGTTCCCGCGATAGAACAAATCAAAGCACCAGCACCTGCACTCCCTGGATTTCCACGCGC
TCCTTGCCCGCTTGTTTTCGTCTTAGAATCTTATATCATATCCCA
Found at i:772862 original size:24 final size:24
Alignment explanation
Indices: 772830--772877 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
772820 ATAAGCCTTC
772830 AAGCAAGAGATAGAGCCAAAGGTT
1 AAGCAAGAGATAGAGCCAAAGGTT
772854 AAGCAAGAGATAGAGCCAAAGGTT
1 AAGCAAGAGATAGAGCCAAAGGTT
772878 GAACAAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.29, T:0.12
Consensus pattern (24 bp):
AAGCAAGAGATAGAGCCAAAGGTT
Left flanking sequence: Indices 772330 -- 772829
AAACCACAGAGCTAAGTTCCCGCGATAGAACAAATCAAAGCACCAGCACCTGCACTCCCTGGATT
TCCACGCGCTCCTTGCCCGCTTGTTTTCGTCTTAGAATCTTATATCATATCCCATTACTCGTGTC
TCTTCTTTCTTACTAATCTAAAATAAAAGCTTTCCTAATGGCATATGGGTGGTGGACCGAAGCAG
AGGCTCCGGCCATCGTTGGAAGCGTTGTTTGGGTAGGTGGTTGTAGGTTTTCCTAGTCTTTTAGC
TTATCAACCCTGTGCACCCTACTAAATCCGCAAAAGAACCTGTACTCAATTATAGGATAATCCTG
TTTTTAAGCACCTTAGAATCACATAACATTAGGGGCAACAAGGAAATAAGGAGTAAAAAAACTTC
TGTAGCCATAGAATCGGGTTAGCAAATCAGGCAAGGGAATCAGGGAAGCATCAGTGAAACCCATT
ACTAGAGACAGGGGAAATCGGGTATGCATTGTACCATAAGCCTTC
Right flanking sequence: Indices 772878 -- 773377
GAACAAAGGATTTCGCTTCGGGTTGTGGGTTGAGATTCTCAGATTCTTCTGGTACTTTTCGGGAT
GGTACTGACTTTCGTACCGCTACGCTTATAACATACCGGGCTATTTATAGTTTTTTCAAAGTAGC
TAGGCTTAGAAGTATGTTAAATCCGCATCACCAATAGAATAGGCTCAGAGGACGAGAAAAAAAGA
AGGGTTGAAGGGAGGGGGCCTAACCGCAAGCAAGACCCGCGTTACAGCAGCCAACCAGAGAGACA
AAGAATCCCCATTTAAAGAACCAATTCCTTTACTAGTTGATAGACCAAGGAAAGCAGAGTAAGTC
CTCTTGTTGGGTTACCCATTTCCAATGTAGGGTGAAATAAATTTGATTGAATACTGAAATACAGA
AAGTGGAATTTCTCCTCTTACCGATTCATCTTAGGAAAGCACTTTTCAGTGAGAAAGAGGTCATG
GAAGAGGGATGCGAGTTAAAACTCGATAGATACAATTCCAGAACT
Found at i:781255 original size:26 final size:26
Alignment explanation
Indices: 781219--781270 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
781209 CAAGGAAATA
781219 GCCAATTGCTCCTCTTGAATGAGTTG
1 GCCAATTGCTCCTCTTGAATGAGTTG
781245 GCCAATTGCTCCTCTTGAATGAGTTG
1 GCCAATTGCTCCTCTTGAATGAGTTG
781271 AAGTTGGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
GCCAATTGCTCCTCTTGAATGAGTTG
Left flanking sequence: Indices 780719 -- 781218
TTCTCTTTCCTCTCCTATCCTCTCCCTACGGTCGAGTGTATTAGATAACCTCTCCCCCTTCTCTT
TGGTTCTGCCTTTAAGAGGCCTTACGAGGGAGAATTTCCACTGCAAACTCACCTCGGTCTCTACG
ATTGCTTGACTTAAACAAGTGACTTCACTCTCTTTTCTTTTATCTGTGAGATTATGTCTCTAATT
CACTCTAACTCTCTCTTTATTTCGTCTTTCTTACATTTGAGTTTATCTTCTTACCTCCCGGGTAT
CGGTCCCAGTAGAGGCGAGACGGTTTTAGGTGATCCAGTGGGGGTGCTCCCATACGGATCCATGC
TATCCGGTTAACTCGTAGGAAAGACGGGTAAAATAGGCCTCGAGTCAATTGTAGCTAAAAAAGGT
AATTCAAAATCGTTCACTCTCCATCTCATATAGCTGTCAAAGCTTACTTTTTTGTTTGAGTCTTT
TTCATTCAATTTATTAGTGGACTAGGACTCGGGAGCAAGGAAATA
Right flanking sequence: Indices 781271 -- 781770
AAGTTGGATAGGCAAGCTCATAGGCAAGAGAAGAGATAGCTACTTAAACCCCTTACGCTAACCTT
CCTATTTGACTTGGGAATGAATAGCTTTCCTTCACTCACTCTCTGGGGAAAGATTAACTCTCCCA
CGAACGGGAATAGCTATAGGTTCTGTAGCTAAGACAGCATACGAGCTGGAGTTCCCGCTGCTAAA
CCACTGACTTCGGACGTAGGTGGGGAACCCTTATAGATATGTTGTTTTCTCACTCGCTCTACTAA
TTCCTCATCAAGAATACAGACGGGTGAAGAAGAGTCAGACGAGGTGATTATACGCTTAGAACATC
CCGAAACTGGGTCTTACTACTTTTTCCCGGATTGGTTAAATAAAGGTTTCACACGAATTAGTTGC
TTCTAGCGAGTTCAGTTCAGAGATTGCTTTTTACCCCTTCCTTCGTTCAAGCAGGTAGAAAGCGT
GACCTATTGGTTAGGGAAGTAGATAGACAACCAGTTACATTAGAA
Found at i:787879 original size:22 final size:22
Alignment explanation
Indices: 787851--787894 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
787841 TCCCTTCCCT
787851 TCTAATAACCTCTAAAGAAAAA
1 TCTAATAACCTCTAAAGAAAAA
787873 TCTAATAACCTCTAAAGAAAAA
1 TCTAATAACCTCTAAAGAAAAA
787895 AGGCCCCTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.23
Consensus pattern (22 bp):
TCTAATAACCTCTAAAGAAAAA
Left flanking sequence: Indices 787351 -- 787850
TTCTTACTTAGTTAGAAGCTGACTCTCTCTTGTTTCATTTTCCCTTTTGGCACCTCTTATCGCCC
TTAGTCATATATCGCGTCAAAGATGGGAGCGACTAGACAAGCCGTCTTGCTTTGAGGACTTACTA
CTTTGCTTGTTTGCTTTGTCTGTTCTCGACTAGAATTACTAGATTCATCTCTCTCTTACTTTACG
CTATTTATCCTTTACGCTACTCATTGTGGTCTTCTTCAGAGTAGCATAGAATAGAGCAGTTCTCC
CACAGACCACCGTTGATCTTAAATCTCGAGTTCATTGTATAGGTGATTTGCCGGAGTCGGGATCT
CATTCAACCGAATCCCAGTTCACGTCTAGAGAGCTTTTCAAAGCAAGTCGTCTTTAAAGTAAATA
AGAAAGTCGTCTTACTGATTTAGCACTTTTCGAGGCAGTAGTAGATTGATCAATTCGCGCATAGT
TCGACTTTGAGTCAACGGGCCAGAGATTCCATTTATCCCTTCCCT
Right flanking sequence: Indices 787895 -- 788394
AGGCCCCTACGCTACATTTACTGTGAGAGCAGGATACTTTTAATAGACGACGGGAATGAGCTTTC
ATCGTACCAGGCTCGAGAGACGGAGTCCAGTATGAAATCAAAGACACAAGGAGATGTAGCTACTT
CTTCTCGCCTAAAGGCGGTTTACTTTTGCTTGGCCCCTCAAAGCCTATATTATTAGCTAGTCGTT
GTTGTTCTCAAGGAACCTTCACCCGAATTCCTTCAAAGAGTTGAAAGCGGGCATAGAAGACTAGA
CTCAACATTTGTTTAATTATAGGATTATTTCAAATCCAACTGCTTGAACGTTCATTGATTCTGTT
TCGATTCATACCGTTTTACCAAGGAGTTCCGTCCGTAATCCTTCGAGACCCCCCTGCTGCGGGTG
CAGGTCTTATTATAGCTCTGGAGAAGTTCAATCACAAAGATTTCATAGGTGAACAAGCAAAACAC
CCATAGTCAAACAATCGACGAGGAGTACTCTGTAAGGCAAAGATA
Found at i:791065 original size:17 final size:17
Alignment explanation
Indices: 791043--791079 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
791033 GGGTAGAGAT
791043 ATAATAGTTGTTAGTTA
1 ATAATAGTTGTTAGTTA
791060 ATAATAGTTGTTAGTTA
1 ATAATAGTTGTTAGTTA
791077 ATA
1 ATA
791080 GGCAGCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (17 bp):
ATAATAGTTGTTAGTTA
Left flanking sequence: Indices 790543 -- 791042
GGATTGTATGGTCCTGGAATATGGGTGTACGATCCTTATGGACTAACTGGAAAGGTACAACCCGT
AAATCCAGCGTGGGGCGTGTAAGGGTTTGATCCTTTTGTTCCGGGAGGAAGAGCCTCTCATCATA
TTGCAGCAGGGACATTGGGCATATTAGCGGGCTTATTCCATCTTATTAGCCGAAAGCATCTATAT
CACTCCTTGCCTTCTGTGCCTTAGAAGAAAGGAGGCCCTTGAGCCTTAATGCGCGCCTGGAGTTC
CCTCTCCTATAGCGTGACGTTGAACCAGAGAAAGAGAACGCCGACGTAAGCGCCTTCTACCGCAG
CAGAACCAAGATGCCTTGCCCTTTCCCCCACCTCTATTGCTCACAAATAACTTGACGGGTGGTCG
TCCTTGTCATATGTCTAAAGCTATTAGGAGGCTAGCCACACCTCCTTCTTTGTTTGAAGCATCAC
TACCTAGCAAGTCCGCGGATGGCCTTATTGATCTTGGGTAGAGAT
Right flanking sequence: Indices 791080 -- 791579
GGCAGCCTTTCAAAAGAGAAGGAAGCAAAAGGTGGGAAGGTCAAGGGAACCCCAGATTAGATGAG
TCGTCTCTTACTAGAGAGGGAGAAGCGAAAGGGAGCAAAGCTGGGCTCGAAGCGATAGCGAGAGG
GAAAGCAGAGGGAAGGTCATGTTCTAGTCCACAGCAGCACTTGACTCCGAGGAAACCATTGGAAA
CGATAGGCCATTTACGGACTCGTTCTTGCCGGGGTAGGAGTAGATAGGTCAAGGTTCTTCTCACG
GGTTGTTATGGAAATGGATTATTCCCTTTGAGGCGAATCGATCTTTAGGAACAAATGACTCCCTA
TTCTAATAAGACAAATTAGATTAGACAGCAGATTCAGCAGCTGGCAAAACCAACTACTTCAACGC
AACTAAATAATTCAATTATTTTACCAGGGCAAAAGCAAGACAATCCCATAGAACTCTTGAAAACG
AAGGAAATCCCCTCTTCGAAAGAAAGGTGATTCTGTTCATGCTTC
Found at i:795692 original size:30 final size:30
Alignment explanation
Indices: 795656--795715 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
795646 TTGGATCCCC
795656 AGCGAAGTTGGTTCAGCGAATAGCATTGAT
1 AGCGAAGTTGGTTCAGCGAATAGCATTGAT
795686 AGCGAAGTTGGTTCAGCGAATAGCATTGAT
1 AGCGAAGTTGGTTCAGCGAATAGCATTGAT
795716 TTTCCGAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (30 bp):
AGCGAAGTTGGTTCAGCGAATAGCATTGAT
Left flanking sequence: Indices 795156 -- 795655
AACAGCTAGAAAAAAGGGATTGATCTGCCCCGGTAATGGGCATTATGGTTTCTGTAATGGGTGTA
TCTTAGAAGATTATGAGATTCGTAGAGGCGAGGTTCCCAAGCAGTAAAGACCATACAGGCGGATT
ACTCAAGCTTGAAAAAGGATTTACTCGAGGATGGTAGGCAGATTCTTCGATTCGGATCATATTTT
GAGTGAATTCGCTTCGGACGCAGAAGAAGGTATGACGTAGGGCAAAGCTTTTTACATGGAACTGA
GTGAGATAGATAGCCTCGGGTAATTCATAAACGTAAGATCGAGATTCCGACATTGACTACTCCCT
ATTCTTTCATTTTATTGTCTCCCCCACCTTTGTCTTTGCCCCTCTCTTTTCTTTCAAGCCAAGGA
AGGTAGATGAGACGTAGCTTATTGTTGGTTTTGGAGCGTCGTTGGAAGCTTTGGGAACTGGGCCT
ACTCGTGCCCATCCTGCCTAAAGAGCGAGGGCGACTTGGATCCCC
Right flanking sequence: Indices 795716 -- 796215
TTTCCGAGGTCTATGCCACACTCAGATCAAAAACCAAGGCAAGCAAGGGCAAAAGAGAAGATATC
TCAATCCCACTCAAAAGCCATGCTCTTTTATCTTTCTTCCTGAGATCGACGCGAGATGAACCACC
CCTCTTCTTGCTGGTAAGTTGCACAACCGGCCCTAACGTATACGCAGCTTTGAGTATATATACAA
AGAAGGCAATATCTCCAAGTACGATACCATGCCGATAATAAAGCCGAGAAGACTTTGAGGACTGA
TTCAAAGCAGAAAGACTAAAGTCGGAGAATAGCAAATGGGATCTTCAAAGTGGTGAACGTAGGAG
CCAAAGTTATTCTGTTCTGATAATATGATATTTCGAAGCTAATCTGCTTTCGAGCCTGTAACGAG
CGTTCCATTTTGAGACTGAGATAATATGAGCTTTCAGAGTTCAAGTCCGGTTAACTCACCATTTC
ACCGCCAGACCAGCTTCCCGTCGCCTTACCAGGTGAGTATATGTG
Found at i:796993 original size:22 final size:22
Alignment explanation
Indices: 796967--797010 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
796957 CATGGGAGCC
796967 TATAAACCAATTCCTTGTCTTA
1 TATAAACCAATTCCTTGTCTTA
796989 TATAAACCAATTCCTTGTCTTA
1 TATAAACCAATTCCTTGTCTTA
797011 AATGATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.41
Consensus pattern (22 bp):
TATAAACCAATTCCTTGTCTTA
Left flanking sequence: Indices 796467 -- 796966
GTACTGTTCGCCGTAAGGCACGAGGTGAGAAAAAGCGAAAACTCTTGCGCCATATGTACTGAGAT
TGTTCGGGAGACATGGTAAAAGCACGGCCCGGAAGATCTTGAATTCACAGTGGCCCTATTCTCTT
ATTCGTTTCCAGTTGACTATTCATCTGGATCTATCAACTCTTCAGCTAGAGAAGGCTAACTCTGA
ATCATACTTTTCTTTTGCTCTCCATACTTTTATAAAGATAGGAATTCTCTTCTCACTTGAGAGAT
AGCATAGGGGAAGGAAAGGATAAGAACCTATACAGGGAAGGGAAGTCAGCTAGTGACTTCAACCC
GATAGCTAGAATCGGAATCTAGAATAGAACCCCAAGCTCAATCCCGTGAATCTTCTATCGATAGT
AAATTAGACGCTCTCTTACTAGGAAAGCTTTTCTAACAATCCCCCAGTCGAACCAATAAAATGAA
TTGAATCTGCATCATCTCTTGACTCTCTTTGTTGTCATGGGAGCC
Right flanking sequence: Indices 797011 -- 797510
AATGATTTATTTAATGGAATCATCCTTTTGTCTCTCCTTAATGGCATAAGGTGCTTAAAAACTGG
ATTAGCCTGATTACCTTACACGAAGGAAGAAATGGGAAGACTACAGGTTTCGGTTGAGGTAAAAG
GGTTTTCAGCATCTATCTCTGGATTGATTATTTATTTTCTTGGGGAAAGGTGGTTCGCCCTCGCA
GCTTCCTTGATTCTTAGCCTATTCTATTCCCGTTCGTGAGCAAATTGCATGCCTCGACCGCTACT
TGCTCTTTCTGTGGAATTGGGTAGCCTTTACTTTGAAGGTGAGTGAAGTTCATAAGCCTAAGAGG
ATCAATCCGTATGAGATGAGAATGCTCTGTAAGACCTTACTCGACTCTAGGAAGAGGAGATAGGA
ATAGAGACTAGATGTGAGTGTCCGTCCCAACGTTTATTCTTATTTATCAAGTACATCTTTTTCTC
ACCTATGCCAATAACTGTAGTAAAGGGCCTCGCAATCATCAGGTA
Found at i:812612 original size:20 final size:20
Alignment explanation
Indices: 812587--812628 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
812577 TCCCTTAACT
812587 TTGAGACTGATAGCAAATAA
1 TTGAGACTGATAGCAAATAA
812607 TTGAGACTGATAGCAAATAA
1 TTGAGACTGATAGCAAATAA
812627 TT
1 TT
812629 TATCCCCGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (20 bp):
TTGAGACTGATAGCAAATAA
Left flanking sequence: Indices 812087 -- 812586
GTCCTCTACGGTTGAGAAAAACAAGGAAAGAGGAAAGAAAGAACAAAAGGTTGAGCATTCCCTAG
TGAGAGGACCTAACTACACAAAAATCCATTATCCTTTCTCGAAGCCTAAGGGATTGAGAATCCAG
GCTTGGTCACTATGATAGCCTTAGTCTTGTAAACCCCCAATCAATGGTCGAAACGGTCCTCTATA
TAAAATTCTATGAGACCCGGAACCCTTATGCCCTTTCGTGAAAATAGAATCACTCCTGTCTTCGC
TGGAACTCTACCTATCATGTACCCTATCCATAGGAAGAAAAAGCAAGAATTCATGAGCTCGGTCG
TGAGCCATTAAGCGGAGGTCTGTCTCAACGAACCTCATTACCCCCTGTATCTGATACCAACAAAG
CAAAATCCTTTTATAAACCTTGGGAAAAAGATAGGGTTTTATCTCAGTTTACTGTAATATATGCA
CTGGGTTTACACTTTTATCATATTTCCATGAGCTATCCCTTAACT
Right flanking sequence: Indices 812629 -- 813128
TATCCCCGCTGTAGAGCAAGGATTCGAAAGTAAACCAACTTCCACATTCCCGTAGCCGAACCAAT
AAAGGCTGTCAGACCAAAACTTCCTAGGCGAAAAACCTTGCTCTCATAAGAGCTACGAGCTAAGA
AAGGTCTTTCCTTTCCAAAGAGCTATAGGTACTACCTGCCTTCCCTTACCTGTCCCATCAACAAC
TCGTGATCGAATAGCTGATTTCCTTCTTTTCGGAATGGGCATTGCACCTCCTGGTCTTGCTTCAG
GTTCGGAGGATGACAACTTGGCTCGAAGCACGTCCTACCCCATAAACATCGAATTACGAGGTATT
AGACATATTGGCATAACATCCAAATCCCGATATCAAATAATCCTCTTTTCACGATGTAGTGACAA
CCCTATATCTCGTATCTTAATACAGAATTTTACTCACTCTTAGATGATAGTTTGAAACTCCTAGG
GAAACCCCCATAGGAAAAGCGGGAGACCTGTCCTAAAAGAACCCC
Found at i:817965 original size:14 final size:14
Alignment explanation
Indices: 817946--817974 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
817936 TGTGGCTTGA
817946 AAGGATCTAATTTC
1 AAGGATCTAATTTC
817960 AAGGATCTAATTTC
1 AAGGATCTAATTTC
817974 A
1 A
817975 TTGTCATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
AAGGATCTAATTTC
Left flanking sequence: Indices 817446 -- 817945
CGAGCCAAAGCAAAGTAGTTTAAGCGATCGGAAAGGAATGGCGAATCGATAGTGCCTGATCTTGC
TTTGAAGGTTTCGGTAGGTCCCATCGAGCCTCTGACTCAAGGTTATTAGATACCGAAGTCTATCC
CAAGCCCTAAACATAGCTAAAGACCGGGCAGCTTCAGAATCCCGCAGTAGACCTACAGCAGCAGA
TAACCCAGGAGCACCACGAGCGCTACCATCAACGTTTAACTTGACAAAACCTTCAGTCGGTCTAG
TCCAACCAATAAAAGACTCACATCTTTGTTTTGGAATCTGCCAAACTCATCCCAAGCTTCTTTAG
CCACTATTTGATAAGCTCGAAAAGGACAAGAGAAGTCGGGGTCATGCAGCAGACAGACCGCCTAT
TGACAGACGAACTGTAGGCATCCTCGAGATCTTTTATACAAGGCTATCTCAGGCACGAGCCAAAC
TCAACGAGGTACGACCCCGCAGCAGGTATAAATATTGTGGCTTGA
Right flanking sequence: Indices 817975 -- 818474
TTGTCATTTTAATCGTACTATGGAACGAAGAGAAAGGTGATGCTACCAAACGAATGGAAAGCATG
AGCATGCTACGCACCTTTAGCCAAGGACGAGGATATTATCGACGAGAATCGCTTCGCATCGACAC
CGTCCAAGAACCAGCTTCCGAAGGATAGCCTGTGATAGTGGACTGGCACCCATGCTCAAAGCGGA
CATGAAAGTACGAACAAAATCAGCAAAAAACATAGCAGCAAAGAAGACCTTTGTGCATAGCGACG
ACTAGATTATACGGACACTTCTTCGTAAAGGGGCTCAGTTCTCCTGAAGTTTTATGCAATAGACA
GCAGAAGCGGCTAAGTCTTAGGGATTTCATAACGCCTTGCGAGTTAACCAAGCCTTACATTAACG
ATGGGTGTTGAAGCACATCCTCGATCTCTAGGTTACTAGGCCGGGGAACGAGCCCTGCCAAAGAA
AAAGAAAGAATCAGCAAGAGAAGAAGACCCATCTGAAGGGTGAAG
Found at i:826629 original size:25 final size:25
Alignment explanation
Indices: 826595--826644 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
826585 TTACTAATAG
826595 TTAGTATAGCAGCACTAGCCCGTTT
1 TTAGTATAGCAGCACTAGCCCGTTT
826620 TTAGTATAGCAGCACTAGCCCGTTT
1 TTAGTATAGCAGCACTAGCCCGTTT
826645 AAAGCTGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (25 bp):
TTAGTATAGCAGCACTAGCCCGTTT
Left flanking sequence: Indices 826095 -- 826594
GCAAAACCAGTTCTTCTACGTATGAGAAGCCAATTGACGTAACAAGCTCCAAGATTAATGTCGAA
GACTAGTATCTGCTACACCATAGAAAGCCGTCAAAGGCATTACGTTCATCCACTAACATGTCAAT
ATGATGCTTATAAAAACTGAGAAAATCCAAAACAAGCAGAAAAACCACATCGGAGCATAATAAAA
TCGTTCTTACTTTCGGGCAACTTTCTTTACATAATAAAAAGCACGTTCGGGCGCTCTTGTCTGAT
AAGCTTATAAGAGCTCTAACTGCACATGGGTTCCCAAGCCCACGGCAGTTCCAAGCAAGGCCTAT
CATGGCTCTCGACGATATGCATACACCAATCCTTTTATTTAGACCCTGTTAGACCGATAGGACCA
CGTGCAACATACAGCTCTATTAGTGTTAGGACTTCCTTTAGCTCGCTGACTAGGGATCGTCTCCA
AGGCTACCCACAGCTACACGCCTCCCTTAATATACTTACTAATAG
Right flanking sequence: Indices 826645 -- 827144
AAAGCTGCATTCTCCTTGTACGTAAGGAGGAAAAGCAACCAGCAAGACTATCGCTATTGGCTCTA
GCTCTACTACCCATAGAAATAGCTCCCACAGTGAATACACAATAGACTTGGACTAAGCCTTCCCT
TACCGTCCCAAAGCAGGGCAGGTATAAGATAAGACGAGGCTAAGCTGATACATCTAGTCGAACTA
GAAGGATATGAATGTATGGGTCGAGGCTTCATTTCCAATGATCCCGCTTTTTAAAAGTCTGATCC
CAGGCTTTACTTTTCTTCTCAACTTGTATGTCTATCAAATAGTTGACTGCAGCTCTCTTACGGGT
GTAAAGATCTTTTTGAGAACGACCCATCTCTTGTTGAGCGCCTGATGCTTTCTTTTGATTAAGAA
GTTAATGAAGATAGTGGATTAGGGTTTTAGGAGTATTCAAAGGGTTTTATTAAGATTCTTGTATA
ATGTAGAATGAAGTTTTTCATTTCTTGCTTCATACCAAAGATTCA
Found at i:828623 original size:18 final size:18
Alignment explanation
Indices: 828600--828635 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
828590 CAAGAACCAT
828600 TAGAAAGAAAATCACTTA
1 TAGAAAGAAAATCACTTA
828618 TAGAAAGAAAATCACTTA
1 TAGAAAGAAAATCACTTA
828636 CACGGGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (18 bp):
TAGAAAGAAAATCACTTA
Left flanking sequence: Indices 828100 -- 828599
AACTACTGATCGCCTCTCATGCTTCCTCATATCTAAATTACTGGACAGCCAATCCGTCAAGCTCA
TATAAAAAAACTCATCCCATGAATTACGAGAGATCAACTGCTTACATATTCCCATTGCCGGCTCA
CAATCACGAAGTACATGCAAAACGTCTTCAGTGTGGAAGCCACAAGCAATGCATCTGGCATCAAT
ACCCACTCCCCAAGAAAGGACTACATGCATTAGTCACCAATCTGCCACGCCAAGCAAGCCACAAA
AAGCAAATCCAGCGGGCTGTCAATGGAAATTTCCATAACCAAGAGAAATCTTGCATCTCTTTGGC
ACCTAAATCTTTCAGCAAAATCTCATATGCCGACCCAGTTGTGAACTTCCCATTAGAACAAGAGC
CAAAAATGTAAGTATCAGCCATCGTAGAAATACTATAGGATATCCCATAATTTTCATATAAAGTG
AAAGCGGCACCTGCGCAAAAAGAATCTCTAAATTCCAAGAACCAT
Right flanking sequence: Indices 828636 -- 829135
CACGGGTATTAGCATCGACATAGTCCGTAAAAGATAAAATGCAATCACCCAAAGGTTTATCAACC
CATGTATCATAGCAGAAGCTTGTAGATGAACCATCACCAATCCTTTTAACAAGCCCACGTGACAA
GTCCTTGTTTAGGAGAAAGCATTCCCTTCCATGAATTAGACCAGGAAATCCGATAAGGAACTTGG
GAGTTTTTAGCAAAATCAATCACATCTCCGACTACTCATACTATCCAGTTGATTGCAGACATTCT
TTGGGAGCCGGGAAGTAAGCATAGTAGTAATAGGGATAGTCGAAGTAAGCGAAGCAACTAAGGTA
GCTCTCCCCGCCAGATTCAAGCACTTAGTCTTCCATCCACTAAGTCTTGTGCTTACCAATTCTCT
TAAAGTACTTTGCACTACTCGACCATGAATCAGAGGTAGACCAAGATACTTTCCAAAATCCTTCG
TTAAATTAATAAGCATTGCTTCCGCAAGCCTGGTATTACTAGCTA
Done.