Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: KT894205

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 1829341
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29

Warning! 14 characters in sequence are not A, C, G, or T


File 1 of 5

Found at i:696 original size:29 final size:29

Alignment explanation


    Indices: 660--716  Score: 114
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        650 AACTCGAATC

                                         
        660 AATAGGTAGAAATTATGTAATGTAATCTA
          1 AATAGGTAGAAATTATGTAATGTAATCTA

                                        
        689 AATAGGTAGAAATTATGTAATGTAATCT
          1 AATAGGTAGAAATTATGTAATGTAATCT

        717 CTGTGCATCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.44, C:0.04, G:0.18, T:0.35


Consensus pattern (29 bp):   
AATAGGTAGAAATTATGTAATGTAATCTA

Left flanking sequence: Indices 160 -- 659
GTGGACGAGAATCAGCTCAACCCATTACATTAGATTCCGTTAGGAAGGTTAGCTACCCGCTATAC
GCTCATAGGCTCTCTTGCTAGCTACTGGCCTACCTTCTCTTTTTTCTGAGCTAGCTAGACTTAGA
CTATCTATTTATTCGTATTTTTTCTTTATCCCTAAGATAAGATAAGAATTGGAACCCAGCTATCC
ACCGCTCTTAAGGGGAAGTTCCACTCCGTATCTAACCCTACCTTTTTAGTCGGAAAGAAAGCTCA
GCACATAGGGAATCTGTAAAACGTACTGTCATGAACTTCGCCTATCTATTTCATATACTTTTTAG
AATAAATATCATATCATATATCATATTGATTGAGTCATGAATTCAATCCTTATTCAACTTTAGCA
TGGGCTCAGCTCGATAGCAGGCTTTGGGGGAAAGAAAAGCAGGTGCAAGGGATGGCGAATGGGCG
TTCAAACTCGCTTCTTAAATTGAAGAGCGTAAAGCAACTCGAATC


Right flanking sequence: Indices 717 -- 1216
CTGTGCATCAAGTAACGTTTTACCGTGGTTTCATCATAACCCAGGGGGTGCATGCGACTAGACCG
AGGAGTCTTCTGAACCGACTAAAAGAAGAACAGAAGGTGCTGATCCGATAGGAGAAGTAAGCTTT
TCCCGCTATATGCGATTAAAAGTTTTCTATTAATTTTACCATTTGTTAGCGGAAATTGAGAAGTA
AGCTAAAATACCGGGGTTGTAGTAAAGTGAACGATTCGAAACCTTATATAGGAGTGGACGAGAAT
CAGCTCAACCCATTACATTAGATTCCGTTAGGAAGGTTAGCTACCCGCTATACGCTCATAGGCTC
TCTTGCTAGCTACTGGCCTACCTTCTCTTTTTTCTGAGCTAGCTAGACTTAGACTATCTATTTAT
TCGTATTTTTTCTTTATCCCTAAGATAAGATAAGAATTGGAACCCAGCTATCCACCGCTCTTAAG
GGGAAGGGTTACTTATAGGTCTGTCTCGATTCTGAATGTTAAATC



Found at i:7011 original size:23 final size:23

Alignment explanation


    Indices: 6985--7031  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       6975 CAGTGGAAAT

                                   
       6985 AAAGGAAATGATCCGCTTATAAC
          1 AAAGGAAATGATCCGCTTATAAC

                                   
       7008 AAAGGAAATGATCCGCTTATAAC
          1 AAAGGAAATGATCCGCTTATAAC

             
       7031 A
          1 A

       7032 GAAACTTCAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21


Consensus pattern (23 bp):   
AAAGGAAATGATCCGCTTATAAC

Left flanking sequence: Indices 6485 -- 6984
TCCATTCCTACCGCACTGATTAATGTCACCCGATCGAATAAAGAAAGGGAAAGCTATGCGATTGG
AGCTTCAACTGCGGGTAAGGCATAGGCTTACGACTGACACTGGCTTGAGATACTTATGTTAATTA
GGTGGCGAACCAGACGGTAGCACGGTTGAAAACGCTTGCTTGTTAGCACGAATGAAATGATAGGC
AAAGTAACCTTATCCTACTAAGGCATCCGACCTCTTAAACACTGCTTTAATAGCGGAATCGGAAT
ATGCTGCTTTTTTTGTTTATTAGGTTCCCTGGGTAATATGAATCTCAATTAGATAAAGCTGTTGA
AAGAACCAGTTTGTTGGGCTTATTTTCCATGTTTCTGGATGATGGTAGTTTCTCATGCTAATCAG
AATCTGCATTTCCTACTCTCCTCGTGGCATCACTACAAGCTCCTACTCGTTCAGTTCGCCTAGAG
GGAGTTGTTCTTGTCGCAGGCGCAGGAGAATAGCTCAGTGGAAAT


Right flanking sequence: Indices 7032 -- 7531
GAAACTTCACCCGCCACTCCCGTCTTTCCCAAAGAGGCCCAGTCAGTTTAGTTTTTCAAAACCAG
CGGAAGAGTGGTGACCAATAAAGTAGGGTGCCTTTACGGGCAAGGGGGTTACTCATGGGCTGTGA
AAGATAGGGCGCTTACTCCATCAAAGAAAACTACCCCTGCTTCTTCGCCAACCATTCGGGCCGGT
CTCGCATTCCTTGGATTGGTCTGCTTTGATCGAAAGTTGCAAACTTGGAATGAGTACGAAGCCTC
AGTCAAGGAAAAGCTGTTCTTTCTCTCTTTCCTCAACTTGTTCATTTGGAAGAGATGCATGAACC
TTCAACAGTCTTTTGTATTTCTCAAGCCTGAAGCAGGAACAGAAAATCCCGAATATAAAGAATAG
ATTGCAGACGGTTAGGGCCAATCTACATCCAACACAAGAACAACCTCTCAAGACAGGACAGCAAA
GGCAGACTCTTAGAGGAGATCCCCAGGTCGTCAGTAGGTCTTTCG



Found at i:15410 original size:20 final size:20

Alignment explanation


    Indices: 15387--15430  Score: 88
    Period size: 20  Copynumber: 2.2  Consensus size: 20

      15377 GGAATGAAAA

                                
      15387 AAAGAAGAGATTCCCATACT
          1 AAAGAAGAGATTCCCATACT

                                
      15407 AAAGAAGAGATTCCCATACT
          1 AAAGAAGAGATTCCCATACT

                
      15427 AAAG
          1 AAAG

      15431 TCAATCGACT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   24  1.00

ACGTcount: A:0.48, C:0.18, G:0.16, T:0.18


Consensus pattern (20 bp):   
AAAGAAGAGATTCCCATACT

Left flanking sequence: Indices 14887 -- 15386
GGAATTGATTAGCGAAGTAGGTGAGTAGGATTCATAGTTCCCAGAAAAACCGATAAACCTGTAAG
CTGGCCAATTGCTTTCACTGCTTTGCTTCTTCTTGATAGCACAGGCTCAGTTCAGAAAGAGTCAA
AGTAAAAAAGGAGCTATCTCTGCCTTAGGATTCCATTCCAGTTGACTTCTTTTCTTGTCTGGATC
ATGAGAAATTTGCCCTTCACCGAGTTAATGGTGAGAGTCTTCTTTATTGGTTAGGTCAATTCCAT
CGATTCTTCTATTCCTCAGAGCTCAATCCTTTAGAAACCTTGCACGAAGATACTGGCTCTTCAAG
ACCTCAGTTTAATGCCTATGGGGCTGTACTCCTAATCGACTACTGAAATGTAGCATGTGATTCTA
TCAACTCGAAACCAGAAGTAGTAGGCTCTGCAAGACCTTAACTCGCTTGAGGTTCTTTGTTTAAG
GGGTACTCTCTCTTCACTGAACTTGGATGAAGGGAGGAATGAAAA


Right flanking sequence: Indices 15431 -- 15930
TCAATCGACTATCTATCAATGTATGGGTATTTGTTGAGAAAAGCAAACTAAAAAGTGAAAGAATG
AATTGAATCTGCATCTGCAGCTATTGAATCTCCTTTTGAAGGTGATCCCGAACTATTCCTACACT
GCTGATTCTTTCCGACCTCTCTATTCCTGATAGGATTATACCCCGACACGCAACGGTGTATGTAA
GCTATTCCCTAAAGTCAGAAAATCATCTCAAGCTGTTGAAACCTGCTTTTTCTGTCTATACTTCT
TCTCCGAACTACTCCTCTCGTCTCACTCCCGTACAACTTCCTTTGAAGAACGGGCACGAAAGCGA
AACTAAAAGGGATTCATCTAAAGACTACTTCGGACTTACAGTTTGGTCAGTTGTATTTTGAGGTT
TTGAAGGCACATTTTCTATTAATGGAGAAGAAATCAAGACCTACTACTTTGAAAGATTTTAGACC
GATTACCCTCTTGAATACCTCGTATAATATACTAATTAAAGTAAT



Found at i:19037 original size:19 final size:19

Alignment explanation


    Indices: 19013--19055  Score: 79
    Period size: 19  Copynumber: 2.3  Consensus size: 19

      19003 ACATCACTAC

                               
      19013 GTATTCCAACAATTATGGA
          1 GTATTCCAACAATTATGGA

                               
      19032 GTATTCCAACAATTATGGA
          1 GTATTCCAACAATTATGGA

                  
      19051 -TATTC
          1 GTATTC

      19056 TTCTTGTTGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  18    5  0.21
  19   19  0.79

ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Consensus pattern (19 bp):   
GTATTCCAACAATTATGGA

Left flanking sequence: Indices 18513 -- 19012
TAAGTTGTGTTACCACTCTTCCGAAATCAAGAAGCTTGGTGACAAAACTAAGCCTAAGCCTTTGG
GCTTTCATTCAGATCGGCCTTTGTCTCCAAACACGGCCGCTATGAGACGCAAAGCACCAAGAAGG
AAGCTGGAATTCTTATCATCTGAGGATGAGGAAGAGCCTATAAAGCATCCTAACACTTCTTAAAC
TAAGAAAGAAGTTCAAAGGAAGTTGGAATTTTCATCGAAAACTTCACCCTACTCGAAAAAAGGGG
GATTGCATTCCGTGCGCCTTGCCTTAATGTTGTATGAAATCCCCGCGGGTGTCAACTTATTAGCT
TTTTCTTCATCTTCTGAATCTATTGGTTGCTTCCCTTTCAAAAGAGATAATTCTATCAATCGACT
CAATTGAAGAAAGACCGGTGGCATTGGACGAGGAAGGGAAAGCGCTTATCAGTTACCGGACTAAA
AGCCATATCTGCCACGAAAGATGCTCTCACCTGAAACATCACTAC


Right flanking sequence: Indices 19056 -- 19555
TTCTTGTTGAGTCAACGGCCGAGAAAAAGAAAAGTCGTTACGCTAAGCGAGTATCCCGAATCACT
CTCACCTCTTCCTCCGAACCCGGAAATCACTATGGTCGACAAGGACTTCACCCCAGTAGAAGACC
CCACCGTGCCTGAGATAAGTATGGGCTAAACGGAGGCTCTTTAAGACCATCAGGGATAAGAAAAT
TAGAGACCTTCAAAGCCAGATCCTGAGCAGGAGGCTCACCCACTACATTATCAATTAGCGGACCC
AATCCAAGCCACCAGTCCAACCAAAAACGAAGCGATGTACCATCACCCACACTCGGACTCCCTTC
AACAAAAGATCCTTCGTCTTCACAATACCCCTCCATGTAGCCGAACCAATGTTAGTAAGAGTACT
TGAAAGAAACCTTTCATTCTCCCGCAAATACTTTCCACGCAAAACTTGAGCCCACAAGGAATCTT
GCCGTTCATGAAGCCTACAACCAACTTTGGCAAGCATGGCAAGAT



Found at i:20370 original size:25 final size:25

Alignment explanation


    Indices: 20340--20389  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

      20330 GAAAGCCATT

                                     
      20340 GCGTATGATTCAGATACAATTTAAC
          1 GCGTATGATTCAGATACAATTTAAC

                                     
      20365 GCGTATGATTCAGATACAATTTAAC
          1 GCGTATGATTCAGATACAATTTAAC

      20390 ACAGATTCTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Consensus pattern (25 bp):   
GCGTATGATTCAGATACAATTTAAC

Left flanking sequence: Indices 19840 -- 20339
AGCTACGCAGCGAACAGATAGAAGGGTCTTTAGATAGAGTTTAGCAAAGTAGCATATCAGAGTAT
GAATTCTTCTGAATGGATCTTAGGTGATCTAAGGTTACCTGCTTTCACGAGACCGCAGCCTACGC
AAGGTGAAAGCACATGGGCCCGCCACTTTCTTAATCATCCAAATTCAATTCACTACTTCTCTTAT
GATATTTCTAAAACACCGGATGAAGCCTTTTTTCTACTCTACGATACCGCCCTTAGTCTGCAACC
TTGATTTAGCTACTTTTCCTGCTTTCTTTGTTGATAGGGAAGGTAATGAAAGGTAAGGTCCTTCT
TACCCGAGTGTGTTTGATAGAATAAGGAATGTTAATGAGGCGCTCTGGCTGGGGTTGCGATTGTA
ATTGGAAGGTCAAGCTTTCCTTATCTCTTTCCGGAATAAATGGCAGAAGATTCATTAGCTACGTA
CTTTAATAAAGAATCGTGAGAAAAGATTCACGAAAGAAAGCCATT


Right flanking sequence: Indices 20390 -- 20889
ACAGATTCTCTGTAGGGAACCCTTCTTCTCAAGCTGTTTATTAAACCTCTTTGTTGTCTGACTCT
GGGAAGTGTTATGCCTTTCGCTTTCGTGCCCGTTCAATCGATTCTATGAACTTCCTTTTCTTTCT
GAATATGCTTTCGGTTCCGGACTTGGCTTTATGGTTTCGGACGTAGGAGAAATCCCTCTTCCATC
ATGCTATCAACTTGCTTTAACTCTGGCTTGAGAATGAGGTTTCAGGAGAGGAAACATACGATTCA
ATGATTCCGATAGACGATTCCCGATCCCTTCTGAGCAATAGGGGGCGCTTGGCTCGATTCCTACC
ACGTACGGGTATAGATTGCAATAGGACTCGAAAGAAAGAACCTTTCTACCAGCTTCAATGCCTAT
GGAATCGTCTACTGTATTGGATTGATCTTATTCTTCTGCGACAAGAACAACGAGCTAACTGTCAA
TAGATTCAGCTGAACCAATTTTTCTTATTCTCGGAAGGAGGGAAA



Found at i:23408 original size:21 final size:21

Alignment explanation


    Indices: 23383--23424  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      23373 TCTCACTATC

                   *             
      23383 GAAGAAGGAGGTATTCGCCTA
          1 GAAGAAGCAGGTATTCGCCTA

                                 
      23404 GAAGAAGCAGGTATTCGCCTA
          1 GAAGAAGCAGGTATTCGCCTA

      23425 ATATATCTGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19


Consensus pattern (21 bp):   
GAAGAAGCAGGTATTCGCCTA

Left flanking sequence: Indices 22883 -- 23382
GTCACGAACTACGATATTTATTGAGCTTGCGACTCTACGTAATGATATTAACGTGAGATCCTGAT
AATAGGAAAGGTTCAGAAAGAAAGGACTCACTCACCAACTGCGTCAAATGATATATTCTCCATAA
AAACAAATAAAAGACGGGTTCCCTGTAGGAATTTGGCCATAGAATGAGTTTTCTCAGGGATTGGA
CGAATTATTCTCGTAATAGAAGAACATCCACTTCGATGTCTTTTACCCAATAGATGCCATAAGAG
TTAGCTCTCTAGTGGCTAAATTGAAAGACTGACGAAGAAGTCCATTTTCCGCTTATTGAGTACCG
TATTTCGCTCCAGAATACATACTCTAATAGGAAATCATTTTTTATTTAAGAAAGCCAGTCATTGT
ATAGAACGCCCTTTCATCATAGGTAAGTCAAAGCGCTTTCTTTTAAGAATGCATATGGTTCCATT
TTTCTTTCCTTTTTTAACCGGGGTACAAGACGGCATCTCACTATC


Right flanking sequence: Indices 23425 -- 23924
ATATATCTGAACATAATAGACTGTTGCAACACNGGGACCAATGAACCGTCCTCTTACTTTGCTTT
GCCCGCTCATGCCTAGTGGGATCCCCTTCTGCTCGTCCACAAAGCCGGTGGTCGGAGTTTCGTTT
ATAAAAACTAGATGATGGATGTGATTCAACAATCAAAGAATCAAATTCACCATTTTCCTCTACGA
CTTCTCCTATTCGATCTCCTGGAATGGACTCCCCTTCTCTTTACTAAGATGTCAAGCAATAGTAG
ATTAAGATTATGTCAGAGCACCATCCATCTTGGCTAAGGTCCAGCTCCTCCTCTTCGTTTTCCAC
TAGCTTATAAGTGCTACCCGCTTGGGATTCCTTCAGCTCCAGTCGTAACAAGGCAGCAGGTACAT
AAAAAAGAAAAAGTCAAAGAAATAGAGTATATAGAGTATATTATAGTAGAATGCACCTCGCACCG
AGATACCGGAACGAGAGATACGATCAAAGTGACGGCTAATATGTC



Found at i:24010 original size:26 final size:26

Alignment explanation


    Indices: 23974--24025  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

      23964 TGAGTCGATT

                                      
      23974 TAGATAGAAGTACCTTAGTACTCGTA
          1 TAGATAGAAGTACCTTAGTACTCGTA

                                      
      24000 TAGATAGAAGTACCTTAGTACTCGTA
          1 TAGATAGAAGTACCTTAGTACTCGTA

      24026 GCTGTTGATT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31


Consensus pattern (26 bp):   
TAGATAGAAGTACCTTAGTACTCGTA

Left flanking sequence: Indices 23474 -- 23973
CCTCTTACTTTGCTTTGCCCGCTCATGCCTAGTGGGATCCCCTTCTGCTCGTCCACAAAGCCGGT
GGTCGGAGTTTCGTTTATAAAAACTAGATGATGGATGTGATTCAACAATCAAAGAATCAAATTCA
CCATTTTCCTCTACGACTTCTCCTATTCGATCTCCTGGAATGGACTCCCCTTCTCTTTACTAAGA
TGTCAAGCAATAGTAGATTAAGATTATGTCAGAGCACCATCCATCTTGGCTAAGGTCCAGCTCCT
CCTCTTCGTTTTCCACTAGCTTATAAGTGCTACCCGCTTGGGATTCCTTCAGCTCCAGTCGTAAC
AAGGCAGCAGGTACATAAAAAAGAAAAAGTCAAAGAAATAGAGTATATAGAGTATATTATAGTAG
AATGCACCTCGCACCGAGATACCGGAACGAGAGATACGATCAAAGTGACGGCTAATATGTCCTTG
CTTAATAAGATACCTACACTCCAAGTACAAGAGAGTGAGTCGATT


Right flanking sequence: Indices 24026 -- 24525
GCTGTTGATTGATGGTTTGTTAGTGGATCCGCTAGGCGAACCAGCGTAAGGCCGTAAAGCGAAGC
CTGTTCTGAAAGAAGGGTAAAGCTAGTTCAAGAAGGGTAAAGCTAGTTCGAAGTTCAGTTTCTTT
GTGATCTCCCAGTAAACGGTATTCATATGGAAAGCCAACTGCTTATTTTTTTAGTGGCTTACCCG
CTCCAACTTCGGAATAAACTTCATCATGCGAAGAAGTCGACTCCTCTGCATACTCTTATCTTACT
TGACGCCCGCTTAAAGGTATGGCTCGCACTATAAGGGACTACCAGCTAAATCACCTTTCACATCT
TTCTTTCAAGTCATTCGTTGAAAGTCTGTGCAAGAACTCGGACTACGAGTGAGTGAAAGCAGTTA
CTTGATGACCGGCATATATGATGGCATGCGGCGCATAAAAAAGCAGTCGCGAACCTGCCATATTC
TTTGAGAATAAAAGAAGGGCCCTCAAAGCTTTCGTAAAAGTGCTT



Found at i:24125 original size:20 final size:20

Alignment explanation


    Indices: 24100--24139  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      24090 CCTGTTCTGA

                                
      24100 AAGAAGGGTAAAGCTAGTTC
          1 AAGAAGGGTAAAGCTAGTTC

                                
      24120 AAGAAGGGTAAAGCTAGTTC
          1 AAGAAGGGTAAAGCTAGTTC

      24140 GAAGTTCAGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.10, G:0.30, T:0.20


Consensus pattern (20 bp):   
AAGAAGGGTAAAGCTAGTTC

Left flanking sequence: Indices 23600 -- 24099
TTCACCATTTTCCTCTACGACTTCTCCTATTCGATCTCCTGGAATGGACTCCCCTTCTCTTTACT
AAGATGTCAAGCAATAGTAGATTAAGATTATGTCAGAGCACCATCCATCTTGGCTAAGGTCCAGC
TCCTCCTCTTCGTTTTCCACTAGCTTATAAGTGCTACCCGCTTGGGATTCCTTCAGCTCCAGTCG
TAACAAGGCAGCAGGTACATAAAAAAGAAAAAGTCAAAGAAATAGAGTATATAGAGTATATTATA
GTAGAATGCACCTCGCACCGAGATACCGGAACGAGAGATACGATCAAAGTGACGGCTAATATGTC
CTTGCTTAATAAGATACCTACACTCCAAGTACAAGAGAGTGAGTCGATTTAGATAGAAGTACCTT
AGTACTCGTATAGATAGAAGTACCTTAGTACTCGTAGCTGTTGATTGATGGTTTGTTAGTGGATC
CGCTAGGCGAACCAGCGTAAGGCCGTAAAGCGAAGCCTGTTCTGA


Right flanking sequence: Indices 24140 -- 24639
GAAGTTCAGTTTCTTTGTGATCTCCCAGTAAACGGTATTCATATGGAAAGCCAACTGCTTATTTT
TTTAGTGGCTTACCCGCTCCAACTTCGGAATAAACTTCATCATGCGAAGAAGTCGACTCCTCTGC
ATACTCTTATCTTACTTGACGCCCGCTTAAAGGTATGGCTCGCACTATAAGGGACTACCAGCTAA
ATCACCTTTCACATCTTTCTTTCAAGTCATTCGTTGAAAGTCTGTGCAAGAACTCGGACTACGAG
TGAGTGAAAGCAGTTACTTGATGACCGGCATATATGATGGCATGCGGCGCATAAAAAAGCAGTCG
CGAACCTGCCATATTCTTTGAGAATAAAAGAAGGGCCCTCAAAGCTTTCGTAAAAGTGCTTATTA
TTATACAACATATTTACCGGAGACAAACCTCTCAATATCCACGGAAAGTTTCTTTTTTGATAGCG
AAGCGGGTTAGACTCTTTTATTCTTTCATTTATGAGATGACTTCT



Found at i:24815 original size:22 final size:22

Alignment explanation


    Indices: 24787--24829  Score: 86
    Period size: 22  Copynumber: 2.0  Consensus size: 22

      24777 AAGGAGAGAC

                                  
      24787 AGTCCCAGTATCTTCGTGAAAG
          1 AGTCCCAGTATCTTCGTGAAAG

                                 
      24809 AGTCCCAGTATCTTCGTGAAA
          1 AGTCCCAGTATCTTCGTGAAA

      24830 ATGAGAGCAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28


Consensus pattern (22 bp):   
AGTCCCAGTATCTTCGTGAAAG

Left flanking sequence: Indices 24287 -- 24786
GACGCCCGCTTAAAGGTATGGCTCGCACTATAAGGGACTACCAGCTAAATCACCTTTCACATCTT
TCTTTCAAGTCATTCGTTGAAAGTCTGTGCAAGAACTCGGACTACGAGTGAGTGAAAGCAGTTAC
TTGATGACCGGCATATATGATGGCATGCGGCGCATAAAAAAGCAGTCGCGAACCTGCCATATTCT
TTGAGAATAAAAGAAGGGCCCTCAAAGCTTTCGTAAAAGTGCTTATTATTATACAACATATTTAC
CGGAGACAAACCTCTCAATATCCACGGAAAGTTTCTTTTTTGATAGCGAAGCGGGTTAGACTCTT
TTATTCTTTCATTTATGAGATGACTTCTCTTGCCTCAACTCAAGAGACTCCAAAGTAAGAATCGG
CAGGATCTCGTCCGAATCGAAATGACTAAGATAGTAACATAGGGCAGAAATGACGTTGTAAGGAC
AAGCTAGATAGGATCTCCATATTTTCATAGCATCCAAGGAGAGAC


Right flanking sequence: Indices 24830 -- 25329
ATGAGAGCACGGCTCGACCCTCCATTATTTGGAAAGCAAGCGCCTTGGCCGGGATCGGGATTTGA
TGATAGGACTGGAATACTAGCCTCAAAACCAACTCTATGTCCAAACCTCAAAACCTATGATAAGG
CAAAAGTTGCTACAGGGAACCATGAATCTCAAGCTGTCTGTTTAAGCTCTTTGATGAGTATAGTA
TAATGTCAAATGAAAAATGAGAAAATTGTTCGGGAGACATGGGCAAGGCTTTTCCCAGGCTCATG
ATAAGAACTTTCTCCTTAGGCGTAGCGTCTAGTCCTAGAGAAAATATTGACAAGCGATCAGTTCT
TCCGGAGACAACCCCATGCAAATTCAAAGGGCTTGACTGCACCAATTAAGGGCGAGCTTGAATCT
CTCAGCCCTCAAATCTGAAATCAAACAAACAATAAGACAGAAAAAAGGGAAACTAAAGGCAAAGA
CAGCCTACCTAATCCCCATAGACTGAGTCTAAGCCAGATATATAA



Found at i:28656 original size:15 final size:15

Alignment explanation


    Indices: 28636--28671  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

      28626 ATCATTATAG

                     *  *  
      28636 GACTCTGCATCTCTT
          1 GACTCTGCAACTATT

                           
      28651 GACTCTGCAACTATT
          1 GACTCTGCAACTATT

                  
      28666 GACTCT
          1 GACTCT

      28672 TTTCTGTCGG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.19, C:0.31, G:0.14, T:0.36


Consensus pattern (15 bp):   
GACTCTGCAACTATT

Left flanking sequence: Indices 28136 -- 28635
CCTTCTTTCTTTTACCCCAGGTTTCAGAAAAGCAAGTCAGTTGATCACTTGGAGTCGGATATAGC
TGCAAAAGCTTACTTCGCAAAAGTCCTCAAGAAAAGAAGAAATAGGCAAGGACGGTTCTAAAGCC
TATCATCAAAACAATCATCAATTCCCAATCCAATAGTTAAATGTGGAACTGATTACAGAGATTGG
TTTAAAATTGATGTATTATCCTCACTCATACCAGCAACAGCCTTTACGATTCAACCTTCAAAGCC
TATCGAAAACTTTTATGTAATTATTTAATCCGCTGTGCTTTCGGGATAAGCCCGATGTCCCCTAT
CGTTTCTTGTTTATGACGTGGGGTGAGCTATCGATTCTAGTCTGGTAATAGGCACTCCTTCTTAG
CCTTCCTATTTCTATTCTTATAATAGGTATAGGTCCTGAAGCCGGTACTAGAAAAAGGTAGGAAG
ATGAATCAGAATAAGAATAGACGAGGGAGGGGGGAATCATTATAG


Right flanking sequence: Indices 28672 -- 29171
TTTCTGTCGGCGTATCGTCTTCTTTCTGGAGCCTTTTCTAGCTTTCTAGTTTCAAGAAATATCAT
ATATCAGTAGTGAATGAATGCGCATAGGAGAATATCTTTTATAGTAGATATTCGTATAGATGATT
CTATTCATGGAAAAGAAGGTTAAAGCCAATAAAATGAATTGAATCGGGGAATTATCCAACTAGCT
AGCTGTAGACTAGAAGGCTTCCTTTCCTGATCTGCCCATCTGAACCATCTGCATTTCCTTTACCT
GGTGGGGCAAGAACCAAATGCAACTCTCTTTACAGAACTGGGCATTAACCGAAGGGGATAAACAA
GGGCGCTAAGAGAAGAGGGCCCGTATTCATCTAGGGGGCCTCGAGCTTACCTCCCTACCGAAGGT
CAATCTCAGCAGGTAGGTCTAAAGCTACCGGAAGAGACCAGTCCTTAACTTTACCCGTTGTTGAA
AAAGAATATCGCTCTTCCTACTATTCAGACTTGTGCATTAGGTCT



Found at i:29306 original size:20 final size:20

Alignment explanation


    Indices: 29281--29321  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      29271 CACTCTACGA

                                
      29281 TGTCATGTCTAATTCCATTT
          1 TGTCATGTCTAATTCCATTT

                                
      29301 TGTCATGTCTAATTCCATTT
          1 TGTCATGTCTAATTCCATTT

             
      29321 T
          1 T

      29322 CTGGATCTGC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51


Consensus pattern (20 bp):   
TGTCATGTCTAATTCCATTT

Left flanking sequence: Indices 28781 -- 29280
TAGATATTCGTATAGATGATTCTATTCATGGAAAAGAAGGTTAAAGCCAATAAAATGAATTGAAT
CGGGGAATTATCCAACTAGCTAGCTGTAGACTAGAAGGCTTCCTTTCCTGATCTGCCCATCTGAA
CCATCTGCATTTCCTTTACCTGGTGGGGCAAGAACCAAATGCAACTCTCTTTACAGAACTGGGCA
TTAACCGAAGGGGATAAACAAGGGCGCTAAGAGAAGAGGGCCCGTATTCATCTAGGGGGCCTCGA
GCTTACCTCCCTACCGAAGGTCAATCTCAGCAGGTAGGTCTAAAGCTACCGGAAGAGACCAGTCC
TTAACTTTACCCGTTGTTGAAAAAGAATATCGCTCTTCCTACTATTCAGACTTGTGCATTAGGTC
TTTATGGATTCATTCCTTGGTTTCCCTTTCATCCCCAGAGGAGAGAGAAAGTACTTGCTGAAGAT
TTGGGAATCTATATGGCGAAAGATTATGCCCTTTTCACTCTACGA


Right flanking sequence: Indices 29322 -- 29821
CTGGATCTGCTATAGCGGAAAAAGAGACTTTCTTTGCCGAACAGGGTGAAAACCCGAAAGTACAT
AAAGAGACTAGGACAATTTAAATCCTCTGGGCTCTACAAGACCTCTGCTATCAGCATACAACGCC
TCTTTCACCTCATACGGCGGAACTCGGAACACCATGTAATCTTCTTCAAGCGAGCAGCCTAACTT
AGAGAGTTTGTCAGCACTGAAGTTGCCTTCACGCAGGGTATGGTGGCAAGAACACCTCCAGTCTC
TCTTCAATAGTTCCCTAAGATCTCCAATGAGCACACCAAGGGGGTGGTAAGCAAGATCTGCAGAC
TGAATCAAGTCAAGAACTACCTGTGCATCAATCTCGCACTCTACATTTCTAAAACGCATCAATCT
CGCACTCTACATTTCTAAAACCTTCTTCCCAAGCAAGCAAAAGCCCCAACCGTAATGCATGAAGC
TCTGCCCCGATATTTGAACAAATCCCCAAGTGTGCGGAAAATCCA



Found at i:29709 original size:31 final size:31

Alignment explanation


    Indices: 29671--29732  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

      29661 AACTACCTGT

                                           
      29671 GCATCAATCTCGCACTCTACATTTCTAAAAC
          1 GCATCAATCTCGCACTCTACATTTCTAAAAC

                                           
      29702 GCATCAATCTCGCACTCTACATTTCTAAAAC
          1 GCATCAATCTCGCACTCTACATTTCTAAAAC

      29733 CTTCTTCCCA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29


Consensus pattern (31 bp):   
GCATCAATCTCGCACTCTACATTTCTAAAAC

Left flanking sequence: Indices 29171 -- 29670
TTTATGGATTCATTCCTTGGTTTCCCTTTCATCCCCAGAGGAGAGAGAAAGTACTTGCTGAAGAT
TTGGGAATCTATATGGCGAAAGATTATGCCCTTTTCACTCTACGATGTCATGTCTAATTCCATTT
TGTCATGTCTAATTCCATTTTCTGGATCTGCTATAGCGGAAAAAGAGACTTTCTTTGCCGAACAG
GGTGAAAACCCGAAAGTACATAAAGAGACTAGGACAATTTAAATCCTCTGGGCTCTACAAGACCT
CTGCTATCAGCATACAACGCCTCTTTCACCTCATACGGCGGAACTCGGAACACCATGTAATCTTC
TTCAAGCGAGCAGCCTAACTTAGAGAGTTTGTCAGCACTGAAGTTGCCTTCACGCAGGGTATGGT
GGCAAGAACACCTCCAGTCTCTCTTCAATAGTTCCCTAAGATCTCCAATGAGCACACCAAGGGGG
TGGTAAGCAAGATCTGCAGACTGAATCAAGTCAAGAACTACCTGT


Right flanking sequence: Indices 29733 -- 30232
CTTCTTCCCAAGCAAGCAAAAGCCCCAACCGTAATGCATGAAGCTCTGCCCCGATATTTGAACAA
ATCCCCAAGTGTGCGGAAAATCCAACTAACCACTGCCCCGAGCCATCTCGAATGAGACCACCTGC
ACCAGGAATGCCTGGGTTCCCACACGCAGCTCCATCAGTATTGAATTTGACAGCCAAACCAAGCG
GTGGAATCCAACTAATATGCCTCAAGGAAGAAGAGGAAGTACTCATAGTTTCCCTAGCAGCACAA
ACGTCATAGGCTGTAGCTAAAATATTCCGAGATAAGACCCAATTATCAAGCACACAATCCTACGC
TTGAAACAACAAACCGCACCGTCGAGTCCATAGTCTCCAACACGCAGTAGCAAACTTAACCACAT
ACTGCCAATCATGCTCTTTATTATCAAGATTATCACGTAGCCAATCTTGCAAAGAGGATCCAAAA
AACTGATGCCAATGAGGCTGCAAAATTAATTGCTTACAAACCATG



Found at i:31547 original size:23 final size:23

Alignment explanation


    Indices: 31517--31571  Score: 96
    Period size: 23  Copynumber: 2.5  Consensus size: 23

      31507 AAGCAATACC

                                   
      31517 GTTA-ACAAGAGACAACCCCACT
          1 GTTAGACAAGAGACAACCCCACT

                                   
      31539 GTTAGACAAGAGACAACCCCACT
          1 GTTAGACAAGAGACAACCCCACT

                       
      31562 GTTAG-CAAGA
          1 GTTAGACAAGA

      31572 CAGAAGGCTA


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  22    9  0.28
  23   23  0.72

ACGTcount: A:0.40, C:0.27, G:0.18, T:0.15


Consensus pattern (23 bp):   
GTTAGACAAGAGACAACCCCACT

Left flanking sequence: Indices 31017 -- 31516
ACCTTTAGCTCTCTTGCAGGCTCAAGGTCAGTAAATTAAGAATCTGATAATCATTCCCGTCTCAG
CATCTGCATTTACGGTTATGTCATTCGGAGGTGCTTTTAAACTGGATTAGCCCTCTGAGTCTATC
GGATCACCACCTTCTCTTCTTTTAGTCGAAGAAGAAGTGTCGGTTTACCACGGGATTTATAATAG
CGAGTCAATTTACACGGATCGAGATTCCTATGAAACCGATTGTTTCAACCTTGGAATTGGGTAAT
TAAGTACGGGTTTTTCTGTTGACGACTAATCTGCTTGAGAAAGTCAGACTAATTGCGTGCCTACT
GGAAATGGGTATGTACTTGAATTTCCAATGGCAGAAGATTCATTAGCGTAGGAAACCCCAGGAAA
AAAGAAATGGATGTGATAGGCAAAGCACTTCGAGTTCTTATTGATTTGATTGGGGTCTACCTCAA
TGCTATCAATTCTGTCTCATCAACAAGAAAAGAACAAGCAATACC


Right flanking sequence: Indices 31572 -- 32071
CAGAAGGCTAGCAACCCCCGCTTTCCATGTCTTCTGCATATCGCTTATGAAAAGCTAACCTTCAC
TAATCGCCTCTAAGCAATCATAAGCAATAAGGACAAGCACATAAACCAATAAGATGAATATTCTA
TCCTCGCGCGTTCGATTTAGAACATACGCATACAGGCGATTTAGAACACATGCACATGAGAAACT
ACCATCATCCAATACTACTTATAGAAAGTATGCATGGAAGAAAGAAGGAAGAAAGAAAGAAGGGA
TAAAGCGCCTTTTGTTGGTCTTATTGTTTATGGTTTCGTTTGGGGTGTCCGAAGGTAAAAGCGAA
GCTCTAAGTATGTGAATATGTAAAGGCTTAGATCTTAAGTAGCCACCTGTCGCTATTCATACAAC
TTCTCGGCGATATTTGAACTTTCGAAGTTCATCTTTCTTATGCAATTTACACGGAGTATCCAGAT
GTGTTGTTTCGAGAACTACGACTTCAAAGAAGACGAATCCCTACG



Found at i:36377 original size:19 final size:19

Alignment explanation


    Indices: 36353--36409  Score: 114
    Period size: 19  Copynumber: 3.0  Consensus size: 19

      36343 CAGAAAAGAA

                               
      36353 TTAAACGAGGATTCTCTTT
          1 TTAAACGAGGATTCTCTTT

                               
      36372 TTAAACGAGGATTCTCTTT
          1 TTAAACGAGGATTCTCTTT

                               
      36391 TTAAACGAGGATTCTCTTT
          1 TTAAACGAGGATTCTCTTT

      36410 AGGGAACCCT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   38  1.00

ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42


Consensus pattern (19 bp):   
TTAAACGAGGATTCTCTTT

Left flanking sequence: Indices 35853 -- 36352
TCTCTTATGACCCCACCATAATCCGAATTCCTAGAGTAGCCTTCCCTACTCCTTCAAAGTTCATA
TTGATGTGATTTGAAGAGGAAATTGCCACAAGATTGAGATAGATATGTTTTAACTTAAATTTCAA
AAGTCTGGTATTGTGCTTCCGAGATCGTAAACCCGAGCTTCCCCTTATTCTAAAGCTTGTTCTAC
CGCAGTCGATCTTTGGGGTTTGAGATTGTGACTTAGCAGAGCTTTTAAATAAGTCTTAGGCTGTA
ATAATAAGTGCAACTTCAATCAATAGTGACAAAGATTGAGGACTAAAGGCCACCTTTTCTTTTAT
AGAAAGAGTGGATTCTTTCAGAAAGCCCCATCTTCCTTCTTCTAGGAGAATGCTGCGAAAGGGGA
CGAAGCATGCCGCGAGCAACCTTTAACCAATCGATCGTGAGCTAATAGCCTATTCTGATTCAGCT
TATTCGTTCTTTGGGGATTGTGGAATCTTAGATACCAGAAAAGAA


Right flanking sequence: Indices 36410 -- 36909
AGGGAACCCTAGCCTCAGATTCCATTCCTTTCGCTTAGACGAACTACTTTTTGGCTCGGCTGTTG
ACTCAGAAGAAGAGACCAGTCCTGAAAGAACCCAGAGTCAGATAAAGGAGATTCAAGAGCGCGAG
ATTCGGTATATTATTTTGTTCTCCTGGAATATCGATAGAGTTTATTAATTAATGGAAGAACAGCC
CCTCACCCGAGACCAATGAAAGGAGAGCTTGCCAATTTAAATTCGAAAGGGGAATCCAGCAAGTC
AACCGGAAAAGAAAAGGCAATAGATACTTAAACCCCTTCTCCTTCTTCTACAAGTGAATAAGCCT
TCTGCCCAATAGGGTAGCTCATATTTTATTAGGAATCACAGCCTTCTTGTTATCTGTCAGCCATT
GCTTGTCCGATGTGAGCAAGCAAGTTCTTTCTTTGTAGAGAGTAGTGGCTATAACGAGCGATAGG
GGAAAGGGCGAGTGAACGTCTTACATCAATCTTACGCTATCAATA



Found at i:37636 original size:22 final size:18

Alignment explanation


    Indices: 37603--37656  Score: 108
    Period size: 18  Copynumber: 3.0  Consensus size: 18

      37593 TCCCCGCACC

                              
      37603 CCTTATTTCTTTCTTTTT
          1 CCTTATTTCTTTCTTTTT

                              
      37621 CCTTATTTCTTTCTTTTT
          1 CCTTATTTCTTTCTTTTT

                              
      37639 CCTTATTTCTTTCTTTTT
          1 CCTTATTTCTTTCTTTTT

      37657 GTGGTCGATG


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72


Consensus pattern (18 bp):   
CCTTATTTCTTTCTTTTT

Left flanking sequence: Indices 37103 -- 37602
AAGCTCTGAAGATGGATGTTCAATAAGCGCTGATTCTTGAACTCTTGATTCTTTCCTCATCATTC
CCAAGACTGAAGCAAGAAAAGAGGAAGCAGGCTCTGACAGACAAGACCCTTATTCCGGCCTTGAG
TTTATGGTTGGGGTTTCCTCTGGAGCTTTCCCATGCGAACGAATAGAATCATACAGAGCATATGG
AAAAACGAGAAGAGTCAATCATTCGACTTTGGTTGGTTGGCTTTTTGGTAGCTAGTCATTAAGAA
GGGCTAAACCCGCTTAAGAACTGGAAGATAAAGATGAATCTGAATAGGCTCGCGGGAGCTAAGAT
AGGGGGTAATGGGACTTCTTGAGAAGTGTGCTGCTAAAGCTTGGTTTTAACCCTCTGTGGGTAAG
TTGGATTTTAGAGTGTGTAAGCACTGTCTCATATTCTGTAATTCTAAACGGTAAGCAAGCCTTTA
ATATTTGCCCTTCGTGGAGGTCTTAGACAAGTAGATCCCCGCACC


Right flanking sequence: Indices 37657 -- 38156
GTGGTCGATGTCTTGTCTAGGTCAGTTCAACAAAAAGTCCTTCATGGTTCTATTTCGGGTATACA
GTTCAGTAGACATTGTCCAGTACTTACTCATCTCTTGTGTGCAGGACTATTGTCTGTCTTCCTTC
TGGTCAGAGTGTCAATATGGAGAAGTCAAGACTTATATTCAGCTCCAATGTTCCTGATGATGAAA
GAAAAAAGAGTTGAGGAGTTTAAGGGTATAAAGGCAGCAGATAATCAAGGTACATACTATGGCAT
TCCAGCATATTGGGCGAAGTCAAAGTATGATGCAATGTCTTTTATTAAGGAAAAAGTTTTGACTA
AGTTGAAGTGCTGGAAGCAAGAACTCCTTTCTTTTGGTGGAAGAGAAATAATGATCGAAGAGAAA
TAATGATCGAAGAGAAATAATGATCAAAGCTGTAGCAAGTGACATGCCCATCTATCTTATGGCGT
GCTATAAGCTTCCCATTAGGCTTTGTGATGATATCAATTCAGCAA



Found at i:38043 original size:17 final size:17

Alignment explanation


    Indices: 38021--38071  Score: 102
    Period size: 17  Copynumber: 3.0  Consensus size: 17

      38011 TCTTTTGGTG

                             
      38021 GAAGAGAAATAATGATC
          1 GAAGAGAAATAATGATC

                             
      38038 GAAGAGAAATAATGATC
          1 GAAGAGAAATAATGATC

                             
      38055 GAAGAGAAATAATGATC
          1 GAAGAGAAATAATGATC

      38072 AAAGCTGTAG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   34  1.00

ACGTcount: A:0.53, C:0.06, G:0.24, T:0.18


Consensus pattern (17 bp):   
GAAGAGAAATAATGATC

Left flanking sequence: Indices 37521 -- 38020
TCATATTCTGTAATTCTAAACGGTAAGCAAGCCTTTAATATTTGCCCTTCGTGGAGGTCTTAGAC
AAGTAGATCCCCGCACCCCTTATTTCTTTCTTTTTCCTTATTTCTTTCTTTTTCCTTATTTCTTT
CTTTTTGTGGTCGATGTCTTGTCTAGGTCAGTTCAACAAAAAGTCCTTCATGGTTCTATTTCGGG
TATACAGTTCAGTAGACATTGTCCAGTACTTACTCATCTCTTGTGTGCAGGACTATTGTCTGTCT
TCCTTCTGGTCAGAGTGTCAATATGGAGAAGTCAAGACTTATATTCAGCTCCAATGTTCCTGATG
ATGAAAGAAAAAAGAGTTGAGGAGTTTAAGGGTATAAAGGCAGCAGATAATCAAGGTACATACTA
TGGCATTCCAGCATATTGGGCGAAGTCAAAGTATGATGCAATGTCTTTTATTAAGGAAAAAGTTT
TGACTAAGTTGAAGTGCTGGAAGCAAGAACTCCTTTCTTTTGGTG


Right flanking sequence: Indices 38072 -- 38571
AAAGCTGTAGCAAGTGACATGCCCATCTATCTTATGGCGTGCTATAAGCTTCCCATTAGGCTTTG
TGATGATATCAATTCAGCAATGGCTAAATACTCGTGGGGGCAGAAAGAAGATGAGGGAAGAATAC
ACTTTTTAAGCTGGTTTGCTCTGACTATGTCAAAAAGTCTGGGAGGAATGGGGTTTCGTGACTTG
GAACTATTCAATAAGGCTCTTTTTTTTGGCAAAACAGGTTTGGCGCATGTTGGAAAACCCAGAAG
CTTTTTGGGTTAAGATGTTGAAAGGTATATATTATCCCAATTCTGATGTGATGAGTGCGAGAAAG
GGGGCTCGTCCTTCTTGGGACTTGGGTCAGCCCGGTACTAATATAGATGAGGAACTCGAAAGCAA
ACTCAAAAGCTTAGACGGTAAAATGAATTGAATCTGCATCTGCAGCTATTGACTCAGAAAGAAAA
TATGAGGAAAAAGACAGTAAAACACGAATAAAAGACAGCGACCTA



Found at i:40801 original size:33 final size:33

Alignment explanation


    Indices: 40759--40824  Score: 132
    Period size: 33  Copynumber: 2.0  Consensus size: 33

      40749 AGTGACGATT

                                             
      40759 CCACATCTGATTTACTTTCGCTATCCCCTTCTC
          1 CCACATCTGATTTACTTTCGCTATCCCCTTCTC

                                             
      40792 CCACATCTGATTTACTTTCGCTATCCCCTTCTC
          1 CCACATCTGATTTACTTTCGCTATCCCCTTCTC

      40825 AAAGATTTCT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.15, C:0.39, G:0.06, T:0.39


Consensus pattern (33 bp):   
CCACATCTGATTTACTTTCGCTATCCCCTTCTC

Left flanking sequence: Indices 40259 -- 40758
TCTCGGAAGCATTGGGACTTTGGAAATCTTTGTTCTGTCTTGGATGAGTCCCTTAGCCCCAAAGC
CTATAGTGTATGTGCTTTCATCTTAGGCTCCTCAATGTGAAGATTCCTAGACTAGAGACTGATGG
CAGCTAGTACCTTTAGCTCGAGAGAAAGGCCTATTCATTCTATTCTAGGGGATGCAAGCAGGTAA
TTCATATTAGATTCCGTAGTTTGGGATTACGATTGAGCTGACCGAAGTCACACAACACACGCACT
CGTTCAATGAAAGGTAAATAGTCGCAAAGACAGTAAATCCCGAGTCGCGTTTCATGTAAGAGATT
ATGGGTAAATTTGCTTTTCAGAAAGCGATTGCCTGCCCTGCTCAGCAAAAGAGCGAGCGAAAGCC
TAGTCTATTGAGCTACTGGTTCTTCTTCTCTTGCTAGCCTGTCTAACGATCTCTCGTACCCTTAC
CGAACTATATCCCAAGGGTCTATTACGTACGAGCTAGTGACGATT


Right flanking sequence: Indices 40825 -- 41324
AAAGATTTCTTCCTCTTCTTGATGAAGCTGCCTTTGCCACATTCTCCTACTTAGGTCTAGCTCTC
ACCTGTGCAAGCATCAGAACATGCATTCTCGCGATCTACAGAGTCCTTATGGCTTGCTCGTTGAA
GAAGGTAAGACCCCTTGTTTATGGGTTAAAAAGGTCTGTTGATGACAAAGGTACGTCGCATGTAC
GTGCAAAAAGTTGTAGAACTAACAAAGACCTTACTCTGCATGAGTGTCATGATCCTCCCTGGGCG
GAACACCCAGGCTGGCACCGCACATTAGCTTTATTAGAGAGTAGATATTCACATTAGCTTTATTA
GAAAGTAGATATTATAGGCCTAACATAAGGGACGAAGTAGAAGAGTATGTTACTATCTATTGGAT
ATGTCAGCAAGACAAGACTTTCACAAGAAAACTGGACATGGCTTTGGCTGGTTAAACTGCCCTTG
GGTACGAAGATAAGCAGATATTCACTCTCCCTTGCCGATCAAGCT



Found at i:41147 original size:29 final size:29

Alignment explanation


    Indices: 41105--41162  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

      41095 GCTGGCACCG

                              *          
      41105 CACATTAGCTTTATTAGAGAGTAGATATT
          1 CACATTAGCTTTATTAGAAAGTAGATATT

                                         
      41134 CACATTAGCTTTATTAGAAAGTAGATATT
          1 CACATTAGCTTTATTAGAAAGTAGATATT

      41163 ATAGGCCTAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38


Consensus pattern (29 bp):   
CACATTAGCTTTATTAGAAAGTAGATATT

Left flanking sequence: Indices 40605 -- 41104
AAAGCGATTGCCTGCCCTGCTCAGCAAAAGAGCGAGCGAAAGCCTAGTCTATTGAGCTACTGGTT
CTTCTTCTCTTGCTAGCCTGTCTAACGATCTCTCGTACCCTTACCGAACTATATCCCAAGGGTCT
ATTACGTACGAGCTAGTGACGATTCCACATCTGATTTACTTTCGCTATCCCCTTCTCCCACATCT
GATTTACTTTCGCTATCCCCTTCTCAAAGATTTCTTCCTCTTCTTGATGAAGCTGCCTTTGCCAC
ATTCTCCTACTTAGGTCTAGCTCTCACCTGTGCAAGCATCAGAACATGCATTCTCGCGATCTACA
GAGTCCTTATGGCTTGCTCGTTGAAGAAGGTAAGACCCCTTGTTTATGGGTTAAAAAGGTCTGTT
GATGACAAAGGTACGTCGCATGTACGTGCAAAAAGTTGTAGAACTAACAAAGACCTTACTCTGCA
TGAGTGTCATGATCCTCCCTGGGCGGAACACCCAGGCTGGCACCG


Right flanking sequence: Indices 41163 -- 41662
ATAGGCCTAACATAAGGGACGAAGTAGAAGAGTATGTTACTATCTATTGGATATGTCAGCAAGAC
AAGACTTTCACAAGAAAACTGGACATGGCTTTGGCTGGTTAAACTGCCCTTGGGTACGAAGATAA
GCAGATATTCACTCTCCCTTGCCGATCAAGCTATTCGGCAGGATTGTTCTTTCGTAGCTGTTTGA
AAATGGCATTACAAGTAGCAGTCAATTTGGATATGAACCAGGTCTTTCTTCCCTCAGCGAGTGGA
GTTCCTTTCGTATCTTATTATTCATTTTGGTAAGGTAAGGTGAAATTGCCTATTGTATTACGTCT
AAGGTGAAATTGCCTATTGTATTACGTCTGTGATGAGTCTTCGATTCGTTAGAAGCCTTACAAGA
GGTTCCAGGCTGGCTATTTTTGATTTTCCTTTTCTGATCCATAGGTCGCATTAAAAACGAGATCG
ATGGAGCTTTCTTCTATTATTCCTCTCGCTACGATGACGGTATTG



Found at i:41500 original size:29 final size:29

Alignment explanation


    Indices: 41458--41516  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

      41448 TTTGGTAAGG

                                         
      41458 TAAGGTGAAATTGCCTATTGTATTACGTC
          1 TAAGGTGAAATTGCCTATTGTATTACGTC

                                         
      41487 TAAGGTGAAATTGCCTATTGTATTACGTC
          1 TAAGGTGAAATTGCCTATTGTATTACGTC

             
      41516 T
          1 T

      41517 GTGATGAGTC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39


Consensus pattern (29 bp):   
TAAGGTGAAATTGCCTATTGTATTACGTC

Left flanking sequence: Indices 40958 -- 41457
GGTAAGACCCCTTGTTTATGGGTTAAAAAGGTCTGTTGATGACAAAGGTACGTCGCATGTACGTG
CAAAAAGTTGTAGAACTAACAAAGACCTTACTCTGCATGAGTGTCATGATCCTCCCTGGGCGGAA
CACCCAGGCTGGCACCGCACATTAGCTTTATTAGAGAGTAGATATTCACATTAGCTTTATTAGAA
AGTAGATATTATAGGCCTAACATAAGGGACGAAGTAGAAGAGTATGTTACTATCTATTGGATATG
TCAGCAAGACAAGACTTTCACAAGAAAACTGGACATGGCTTTGGCTGGTTAAACTGCCCTTGGGT
ACGAAGATAAGCAGATATTCACTCTCCCTTGCCGATCAAGCTATTCGGCAGGATTGTTCTTTCGT
AGCTGTTTGAAAATGGCATTACAAGTAGCAGTCAATTTGGATATGAACCAGGTCTTTCTTCCCTC
AGCGAGTGGAGTTCCTTTCGTATCTTATTATTCATTTTGGTAAGG


Right flanking sequence: Indices 41517 -- 42016
GTGATGAGTCTTCGATTCGTTAGAAGCCTTACAAGAGGTTCCAGGCTGGCTATTTTTGATTTTCC
TTTTCTGATCCATAGGTCGCATTAAAAACGAGATCGATGGAGCTTTCTTCTATTATTCCTCTCGC
TACGATGACGGTATTGAAATAACAAGAACCCTGGCGGTACCAAAACTAAGGCAAAGACTTTCCGG
GATAGTATTAGGATCCCTTGAAGATTCTCATGTTGGCGTTCCGGCAAAAGCCCTTTCCTTAATGA
TGTTCTTTGCTTTTTCAAAAGGAATTGATAGAGGCTGGATCAATAGCAATAGTAGATACTACAGA
TCCGTTGCGCTTGAACGTGGTGAGGAAGGTAGATGCTTTGAATAGAATGCAAACCTGATTGACAA
CAAAGAGCAAGCTGCTAGTTAGGTTTCAAACAAAGAGCAAGCTGCTAGTTAGGTTTGAAGGAAGA
ATGAATCCCTGCTTGAGAATCTGCTCTTAACTCTTGTGTACATGA



Found at i:41941 original size:30 final size:30

Alignment explanation


    Indices: 41905--41962  Score: 116
    Period size: 30  Copynumber: 1.9  Consensus size: 30

      41895 CCTGATTGAC

                                          
      41905 AACAAAGAGCAAGCTGCTAGTTAGGTTTCA
          1 AACAAAGAGCAAGCTGCTAGTTAGGTTTCA

                                        
      41935 AACAAAGAGCAAGCTGCTAGTTAGGTTT
          1 AACAAAGAGCAAGCTGCTAGTTAGGTTT

      41963 GAAGGAAGAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24


Consensus pattern (30 bp):   
AACAAAGAGCAAGCTGCTAGTTAGGTTTCA

Left flanking sequence: Indices 41405 -- 41904
CTTCCCTCAGCGAGTGGAGTTCCTTTCGTATCTTATTATTCATTTTGGTAAGGTAAGGTGAAATT
GCCTATTGTATTACGTCTAAGGTGAAATTGCCTATTGTATTACGTCTGTGATGAGTCTTCGATTC
GTTAGAAGCCTTACAAGAGGTTCCAGGCTGGCTATTTTTGATTTTCCTTTTCTGATCCATAGGTC
GCATTAAAAACGAGATCGATGGAGCTTTCTTCTATTATTCCTCTCGCTACGATGACGGTATTGAA
ATAACAAGAACCCTGGCGGTACCAAAACTAAGGCAAAGACTTTCCGGGATAGTATTAGGATCCCT
TGAAGATTCTCATGTTGGCGTTCCGGCAAAAGCCCTTTCCTTAATGATGTTCTTTGCTTTTTCAA
AAGGAATTGATAGAGGCTGGATCAATAGCAATAGTAGATACTACAGATCCGTTGCGCTTGAACGT
GGTGAGGAAGGTAGATGCTTTGAATAGAATGCAAACCTGATTGAC


Right flanking sequence: Indices 41963 -- 42462
GAAGGAAGAATGAATCCCTGCTTGAGAATCTGCTCTTAACTCTTGTGTACATGAATGTAAGAAAA
AAGAAAGAGTTTGTGGTTTCTAGTCTTAGAAAGTCTCCTATCTGTGGCTAGAAGAGAGTTGCCCT
AACTCTTAGTAACCTGTAAAGATTATAATAAGAAAATCTTTTTCCTAATATTCTCTTTGGAGGGG
GAAATATCCTATTAAAAAAAGAGAGTACACTCTTAGAAGAGGGAATCCTTTTATTCATATAGTAA
GAATCGTACCAAGCCCGGGGAAGACTAAGATCTTTCTTTCATACAACAACTTGCCAGTAGGTCGT
AATGCTACGAAGAAGTCGTTAGGTAAGCCTGTCTTTTCTTTATAGAAAGTAGCCTATCCGCATAA
ACTCTCTCTTTCGCTGTCCAAGGGGTAATGCTTTCCTTATCTTACTTTTAAAAAACTCTAAGACA
TCTATTTTTCCTTGTTACCCTTCTATCTCGCACATATTACGCTTT



Found at i:43325 original size:24 final size:24

Alignment explanation


    Indices: 43293--43342  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

      43283 ACAAAGCTAG

                                    
      43293 GCATTCACTCGTAGTACTCCTTAA
          1 GCATTCACTCGTAGTACTCCTTAA

                                    
      43317 GCATTCACTCGTAGTACTCCTTAA
          1 GCATTCACTCGTAGTACTCCTTAA

              
      43341 GC
          1 GC

      43343 CGCCTAAAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32


Consensus pattern (24 bp):   
GCATTCACTCGTAGTACTCCTTAA

Left flanking sequence: Indices 42793 -- 43292
TCGGAGGATGCATCTTCTATATCTAGATTACCAGTGAAAAAAAAACAAACTATCCATTTTGAATG
AGTAAGAAATCTATCTCCATACCTAGATGAGAAGATCTATCTTAGCTGATCTATGGCGTCTAGCA
TATAGATATAGAGTTGTCGAGCGAGTCAGCAAGCGAGTGAAATACCTGGAAACGAGGGAACAAAG
GAGCATCTAAGCGAGGATAGGGGATAATAGAGCCTTTCAGTCCACAAGGTTAGAATAGAGAAATG
GAGTTCCTTTAGGCATCTTCAGAGCTTGTACATTATGTTTTTAGTAGTCTTTCTCAAGGAAAAGC
AGATAGCCTTTTAACACAAGAAAGCATCGGCTATGCCTACACCTTCAAACCCATCTGAGATGAAA
AACCTATCGACATTCCAACTAGAGTACAGCGTTTATGCTAGGAATTGATGGCATGAATAGGCAGC
AGTAGGAAGGCTAACTCGAAATTGAATAAGATAAGACAAAGCTAG


Right flanking sequence: Indices 43343 -- 43842
CGCCTAAAAAGTTATTTGCCTTAAGCTAATCCTGTGCGTTAGGCTTCTCTAAAGCATTTCTTTCA
TGTCTACCGCTGCACTTTCAGGGTCGATCAACGTAGGGAAGAGTCAAAGCAGTGTTTGGAAGTTA
AGAATCAGGCTTTCTTCAAACCTCTCGAGCCTTCTCTGCATCCAGATCTTAGACAAGTACCGGAA
CTGCAGGGCAATCAGTCTGTCGATTTCCTTGCATTATTGATATTCGCAGTTTGCATGAAGTTCCA
GTTAAACTATGTGATTTGCTTGTCCTTAAGCCTAAACTTCTATTAGTGCACTTACTCGAAATCTC
ATTTTTCTTACCATTCTTATTCACAGCGACTTATGAGTGAAAGGTCGATTCAACAATAGAAAAAA
AGCAAGGCAAGGTCCTCCATCGCTAGACTGAGTCTTCAACGGTGAAACTAACAAGTCGAACTTAC
AAGACAGGACAGAGGATCTTCGGGCACTCTCTAGATCTTCGAACA



Found at i:46438 original size:26 final size:26

Alignment explanation


    Indices: 46409--46460  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

      46399 CTTCTACATT

                                      
      46409 AGCGGATAAGACAGTTCGTTCTCGTG
          1 AGCGGATAAGACAGTTCGTTCTCGTG

                                      
      46435 AGCGGATAAGACAGTTCGTTCTCGTG
          1 AGCGGATAAGACAGTTCGTTCTCGTG

      46461 CTTCAACAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27


Consensus pattern (26 bp):   
AGCGGATAAGACAGTTCGTTCTCGTG

Left flanking sequence: Indices 45909 -- 46408
TTGGGAAGCAGTAAGCAAATCAATAATCAATACCGAGCCAGATAAAGGGTTCCTTCTTCCGAGTC
CTAGTCCAGCTCAAGTCTTTACCGTTAAGGGGAAATCGTTTTTCTCAGAGGTTGCGATTTCAATA
GGAAGGGATTTCTACCAGATAGAGAACCAAAAGAATCATTTCCCGAGATTGAATCAGCAGTTTGA
GCAAGAAATTGACGTATAAAGAGTCATTCATGTAGGCAGTCTGGGGTGGGACTTCCTTTGCTTTA
GTAACGGCCCCTGCTTCAGTCAAAAGGGGAACTACTATCGATTCGCCTTTCCTTTAGCTTGCGAG
TTTAAGTTTCCACAGCTTTCAAAGAGCGGACCTCGGGTAATCACCTGTGCGGGAATTATTAAGCT
CAGAAGGGGTAGGCCCTTGGTTTCTTATTCGTATCTATTCATATGCTGACGAGCTCACCTTTTCT
ATCTCCGCTTTCTGGCTATACGCCTTTTCCTACGGCTTCTACATT


Right flanking sequence: Indices 46461 -- 46960
CTTCAACAACCAAAAACAGATTAACGGATTCTGTTTCTTTCCTCTTGGGTAGGGAAGTAGGTGAG
TTGCATTTCTTGTTTCCAGTACTAGTCCAATAACCGAGATCAGATTATTACCCAACAAAAGAAAG
GGGAAAGTAAGATTCATCGATTCGGGTAGGCAACCTATGAGTAAAAGATGAGTAAACCTATTCCT
ATTTGCTTTCCCTCGGGCTTAAATAGATTCTCAAACGACTATAAATTGATTATCTAACTACCTGT
TGTGCGGTTTGTTTGGTGCTCCATATGCACCGGTGGTCAAAACGAGGGCACCCTTACCTAGTCCA
GTTCGAATGTTATCGCTAGGAAGCTGCTCCAGCAGATCATTACGCCTTCTCCATGTGCGATTACT
ACTCTTTCTTTCTTGCTTGTATGAGTAAACCTATGATGAATAGCTTTCCTTCTTCTTTGTGAGAA
AGATTTCTGCAAATTTAGGCATTTTCCTGTCTCTCCTGATTTGAT



Found at i:49349 original size:15 final size:15

Alignment explanation


    Indices: 49329--49358  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      49319 CATTTCGACT

                           
      49329 TCATAATATCATATA
          1 TCATAATATCATATA

                           
      49344 TCATAATATCATATA
          1 TCATAATATCATATA

      49359 AATGAAAGTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40


Consensus pattern (15 bp):   
TCATAATATCATATA

Left flanking sequence: Indices 48829 -- 49328
CCTTAGCTCCTTTAGTTGTTCTTTTTTCGAGGTCTCTCTCTTTGAACTTGTACGCTATACATAAA
CCGAGCCCTTATTTCAGCCCGCGCTACTGAATCAGCAGCTTTTTTTTCCGTGGAGTACCGGAGCT
TTGGAATGAAAGGTAGAGCTTTTTGATAATTGTGTCTCGAATAATGAAGATGGTTTTCAGCTGGG
AGTGAACAGAGCTCTATTGTTAGGCAAGACTACGGCGCCTGGGTAAACATCCCGTTTACCAAACA
AGACGTCGAGAATTAACAGTCGACTGCTATGGAAGAGGGAATCACTTTACCGATGACAGGCTTCT
ACGAATTCTTTTTTGAAGGCAAAGCAAAGGATGCAATATCTGCCTCAGCTTCCATCTGTCCCGTC
CCTAACCGTACCTTCCCCTTCCCTTCTATTAGCCCATTACTTTTCCACTTCGCTTCGTCCCTGCC
ACATCAACTGGCACAAGACCATAAACAAAGAAGGCCATTTCGACT


Right flanking sequence: Indices 49359 -- 49858
AATGAAAGTTTTCTACTCTGCACATTAAGCGGGAAGCGATCGGTCGCAGAATAAAAAGCGTAACT
AAAAAATTGCAGATCTAAAGTCACATCCATAGGGATGAGCTTAAGAACTTCCATACACCAATCAT
GAGCAGGCCCCAATAAAGCCTGTTTAAGGCCGTTGGGAATAGTGAAAACCCGCACCTTCACATCG
CCCTAATCCTATAATGGGGGTGGACTTGTCCTTATATCGCCAACTAACAGACTCCAATGTAAGAC
ATTATTAAAACGTTGGATTTCCGGAGCCAACTTACATTGCTACGATAAACTCTACTTTGACTCCT
CTTGGATTTGAAAGAGCAACTTTGACGGAACTAATGCTAATTGAGGATACCCTGAATTTCATTAA
GTCAAATGGTTTCATGTAATTGGCAATTAATCCCAAAGAAAGAAAAGAACTTCTTTTATCTTTTT
CTCAAACTTTTTCTCGATTCAAGTACAAGCAACTAGCCATGTTAG



Found at i:59765 original size:25 final size:25

Alignment explanation


    Indices: 59731--59781  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

      59721 ATTGGACGGC

                                     
      59731 TTGGGAGAGAGAAAAAGCTTCGATT
          1 TTGGGAGAGAGAAAAAGCTTCGATT

                                     
      59756 TTGGGAGAGAGAAAAAGCTTCGATT
          1 TTGGGAGAGAGAAAAAGCTTCGATT

             
      59781 T
          1 T

      59782 CTCAAAGCTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.35, C:0.08, G:0.31, T:0.25


Consensus pattern (25 bp):   
TTGGGAGAGAGAAAAAGCTTCGATT

Left flanking sequence: Indices 59231 -- 59730
TAGAGGTAAGAACTGGTCTTTCAGGGCCCCGACGTGTCAATGCTTTGGATTCAGCCCTTCTTATG
GACTTCCCCTGTCTCAGTTCATGTATAACTTGCACCTAGGGGGAACCCGGCCTTTCATCATTCCA
TTCCTTACCATCTTTCGGTAGCAGCATCCGGAGCAAGAACTGGTAGTCTCCCATGGTCCAGGGGC
CTTCGTTCCCTCTTAAGTAGATAGGCTGGTCTATTTCGCCTTCGCTACAACCAGGAAGCAAGAAA
ACCTTTCATCAGCTCTAATGACGTTGAGTAAGAAGCGAAGGGCTTTCTTCTTCTTTCCTCTATAA
TAGCTGCCTTGCTTTCCACCCCGAAAGTCGACTGGTAACCTTATCAATGACCTCTTTCTAAGTTG
CTTTCGTCACCCTTCCCTGAATGAGTGGTACTCCCAAGTCCTTCCCCAAATTCCCAGTAAGCTCA
ATGCCCAAAATAGAACTCATTCTCCTAGGAACGCCATTGGACGGC


Right flanking sequence: Indices 59782 -- 60281
CTCAAAGCTTACCTTAGCCCCAGATGCCTCACAAAAAGGGCTCAAAACATCTTTCATGACACAAA
CTTGGTTCTCCGTAGCTCTTTTAAAGAGAAAGAGATGATCGGCAAATAAGAAATGAGAAATACCA
GGTCTATCCTTAGCAATTTAAATCGGCCTCTATTTTCCTTTCTCAATTTATGTGTAAATAAGATG
TCCCAATCGCTACATGCCATGCAGAGAACAAAAAGATAAGGCTCTGTCTGCAAGACCTTGTCTTA
GTCCCCTTTGAGGTATGAAGTGATCAGTTCTCTCGCCATTCCATAAGACTGAGAAAGAAGAGCTC
TCAAGAGAGAAAAGAATAAGATCAATCCAGGACTGAGTAAAGGAAAAGGCTTCCAAGGTTTCATC
TGACAGAGAGCTCTGTCTACTTCATCTGCAAAGCTATCCCCATCCAAGAATTTCCTATCATTCAA
AGAGATGGACGGACAATTCAAGGCTTGTAAAGGGTTTATGTTATG



Found at i:69379 original size:26 final size:26

Alignment explanation


    Indices: 69343--69394  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

      69333 GCTATACCGG

                                      
      69343 ACCAAGGAAGAAAGAAGGATTGGAAC
          1 ACCAAGGAAGAAAGAAGGATTGGAAC

                 *                    
      69369 ACCAATGAAGAAAGAAGGATTGGAAC
          1 ACCAAGGAAGAAAGAAGGATTGGAAC

      69395 TTACTGCAGC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.50, C:0.12, G:0.29, T:0.10


Consensus pattern (26 bp):   
ACCAAGGAAGAAAGAAGGATTGGAAC

Left flanking sequence: Indices 68843 -- 69342
AAGAAACTACAAATTAAAGCCTCTGGGTAAGGCTACTCCTTGAGCATCTGCTACCAAAAAGCTGG
CAGCAGTTCTTTCGGTAGGGCGTAGGTTTATTGACGAGAGATTTCCGCATAGGATAGCAATAGGA
CCAAAGCAGGGCCTTAATTGTGCTTTCGGACCAAACCAGGGCTAGGGTTTAGGAATAGACACCTC
ATTTTATCCTTCTTCCGAAGATGTATGATTGATAGAATATTTTTGAGAAGGAATCTCTATCTTTC
TTAGCATGTATGTACATATCCAATAAAGCCTGACTTTTCCTTCCGAGAAAGGTTCAATCCCCTCG
CGGATGAATGAGAACAGCAACGAAAACCATAGTGCAAGTCCCTATTGAAGGAAGGCTTGTAACAG
CTTTAGATGAATAAACCCCAAGTCCGGAAAAGCGGATTCTGAAAAAGGGGTACAACCCCAAGTTG
AATATTTGGAAGTTGTAGAAAACCCACCTGCTCCAGCTATACCGG


Right flanking sequence: Indices 69395 -- 69894
TTACTGCAGCTCATAGCTCATTAGCTGGCGAGTGGGAAACCTTTTGTTGGCTTACATTCCATAGC
CTCTTCGCCCCTGAAACAATAATATCCGTTGTTCATGTACCTCCTAGAATCTGCTTTCTAGCTGT
CTGTTAAGTTCTCAACGAGCCTGCCCAGATTTAGTCTGTAGATTTAGATCAGAATCCAAGGTAAG
CCTCAACCTAACTAGAGGCATGAAAGAACCCGGCTAATCTCATTATTACTAGCACCCGGAAAGCT
CTGCATCTAGTCTCAGTAATCACAACAAAATCAGGTCGATGCTTTCCAATTAAACCCAAAAGAAT
TTGGCGAAATTGTGGGTTTGCCACACCCCTAAGCATTATAACTTAGGATCTTTATTTGAAAGGCC
TCCATGATGTCCTCCATTTTGGAGCATGCTACACGCTTCTCGAACTTTCTCTCTAAAGAGAAGCT
TTCTTCTATTCCTGGAGTTAGCATTAGATGATGAGTCATTACCCT



Found at i:71375 original size:20 final size:20

Alignment explanation


    Indices: 71347--71407  Score: 113
    Period size: 20  Copynumber: 3.0  Consensus size: 20

      71337 TCTCTCTACC

                                
      71347 TAAGGGTTCAGACAATTTAG
          1 TAAGGGTTCAGACAATTTAG

                *               
      71367 TAAGAGTTCAGACAATTTAG
          1 TAAGGGTTCAGACAATTTAG

                                
      71387 TAAGGGTTCAGACAATTTAG
          1 TAAGGGTTCAGACAATTTAG

             
      71407 T
          1 T

      71408 TGGTTGATGG


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   39  1.00

ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31


Consensus pattern (20 bp):   
TAAGGGTTCAGACAATTTAG

Left flanking sequence: Indices 70847 -- 71346
TATGCCTCATAAGACCACATTTAAAGCAAAACGAGATATCCTCGTATTGAAGTTCTTGGACTCTT
TTGTCTATCCGAACCCTATTAATGAGTATGAATGGGGGAATACTTTTCATTTCAGACCCGAAACC
TCAAGTTCCACATCTATCAAACAAAGGGAACAGCTACTTCTGGGAACCGTTCGCCTCTTACGCTT
CGAAAGCTCCTTCTTCGCCAACCATTAGGGCGACTGTCTAAAACCTCTAAAGCCCATTCGCCTTT
CGGCTCAACCCCGACCGTTCGCTTCCTTCCCTTTTTCCGCCTATTCAGAATGTTTCTCCTTTTCT
GCCTGGGGTTTATTAGCTCAACAGAACATGAGGCCGAGAAAGGGTCTTTGCTATTAGAGCTCTTT
GTACCGAACTCGGTAGCTATTGACTCAAGGCAAAAACCGGATTTTAGGGATGCAGATTCAATTCA
TTTTATTGGCTCTGACCGTATAAGCTTTTGAGTTATCTCTCTACC


Right flanking sequence: Indices 71408 -- 71907
TGGTTGATGGGTGATCATTAAAAAAGTACGAACTCCCAGCGCTAAGGTGATTGGTATGGTTCGAG
GCTAAGCTGCGAGTGTAGACGGCTCAGGGGTATACTTTTATATATCCCCAATCCTCATTAAATGA
TCGAGAGGTATCAGAATATTAAATGATCTAGAGGTATCAGAATCTTCGGTAGCAGATTCCAGGTA
TGCAGATGCGGATTCATAGTCAACTGGAAAGGAAAGAGGAAAACCCGTCCTAAACTTTTCCCCCG
GGTTGAAAAAGGATTGAGCTCTTACGGCTTCAAACAAAGGCTATAAATAAGGGCTGTTATAAGCT
ACTTTGATCAGCGGAGTACTTAGTATACTCAAAGACTTACTATGATGCTTCTTCGCCTCTCGTAG
GAGTTGATTATGACTATCTCAGAATTTGTTTGAGAGTTAATTCGTTTAGGAGAGCGCATTCGAGA
AATATCTTCTTTCTTTCTTGAAAGAGTTGATGCAGGCTATGATCC



Found at i:71565 original size:26 final size:26

Alignment explanation


    Indices: 71529--71580  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

      71519 CCCAATCCTC

                                      
      71529 ATTAAATGATCGAGAGGTATCAGAAT
          1 ATTAAATGATCGAGAGGTATCAGAAT

                       *              
      71555 ATTAAATGATCTAGAGGTATCAGAAT
          1 ATTAAATGATCGAGAGGTATCAGAAT

      71581 CTTCGGTAGC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29


Consensus pattern (26 bp):   
ATTAAATGATCGAGAGGTATCAGAAT

Left flanking sequence: Indices 71029 -- 71528
GCCTCTTACGCTTCGAAAGCTCCTTCTTCGCCAACCATTAGGGCGACTGTCTAAAACCTCTAAAG
CCCATTCGCCTTTCGGCTCAACCCCGACCGTTCGCTTCCTTCCCTTTTTCCGCCTATTCAGAATG
TTTCTCCTTTTCTGCCTGGGGTTTATTAGCTCAACAGAACATGAGGCCGAGAAAGGGTCTTTGCT
ATTAGAGCTCTTTGTACCGAACTCGGTAGCTATTGACTCAAGGCAAAAACCGGATTTTAGGGATG
CAGATTCAATTCATTTTATTGGCTCTGACCGTATAAGCTTTTGAGTTATCTCTCTACCTAAGGGT
TCAGACAATTTAGTAAGAGTTCAGACAATTTAGTAAGGGTTCAGACAATTTAGTTGGTTGATGGG
TGATCATTAAAAAAGTACGAACTCCCAGCGCTAAGGTGATTGGTATGGTTCGAGGCTAAGCTGCG
AGTGTAGACGGCTCAGGGGTATACTTTTATATATCCCCAATCCTC


Right flanking sequence: Indices 71581 -- 72080
CTTCGGTAGCAGATTCCAGGTATGCAGATGCGGATTCATAGTCAACTGGAAAGGAAAGAGGAAAA
CCCGTCCTAAACTTTTCCCCCGGGTTGAAAAAGGATTGAGCTCTTACGGCTTCAAACAAAGGCTA
TAAATAAGGGCTGTTATAAGCTACTTTGATCAGCGGAGTACTTAGTATACTCAAAGACTTACTAT
GATGCTTCTTCGCCTCTCGTAGGAGTTGATTATGACTATCTCAGAATTTGTTTGAGAGTTAATTC
GTTTAGGAGAGCGCATTCGAGAAATATCTTCTTTCTTTCTTGAAAGAGTTGATGCAGGCTATGAT
CCAACAAATGGCTACTGTCCTAAAACCCATGCTGCTTTCGGATAAGCAAGGAAGAAGGAAGCAAG
ACAACAATAATCCGTAAGGTTGAGCCTTGGAGTGGTAGCATGTCGGACTCCGCTGTTCGCATCCT
TTTCCAAAGAAAGAGCGAGCAACCTTACTATTGAATCCAAGCTGA



Found at i:72234 original size:20 final size:20

Alignment explanation


    Indices: 72209--72249  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      72199 GCAATCATGA

                                
      72209 AACTGGGAAACTAGCCTTTT
          1 AACTGGGAAACTAGCCTTTT

                                
      72229 AACTGGGAAACTAGCCTTTT
          1 AACTGGGAAACTAGCCTTTT

             
      72249 A
          1 A

      72250 CTCTACCTTC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29


Consensus pattern (20 bp):   
AACTGGGAAACTAGCCTTTT

Left flanking sequence: Indices 71709 -- 72208
TATAAATAAGGGCTGTTATAAGCTACTTTGATCAGCGGAGTACTTAGTATACTCAAAGACTTACT
ATGATGCTTCTTCGCCTCTCGTAGGAGTTGATTATGACTATCTCAGAATTTGTTTGAGAGTTAAT
TCGTTTAGGAGAGCGCATTCGAGAAATATCTTCTTTCTTTCTTGAAAGAGTTGATGCAGGCTATG
ATCCAACAAATGGCTACTGTCCTAAAACCCATGCTGCTTTCGGATAAGCAAGGAAGAAGGAAGCA
AGACAACAATAATCCGTAAGGTTGAGCCTTGGAGTGGTAGCATGTCGGACTCCGCTGTTCGCATC
CTTTTCCAAAGAAAGAGCGAGCAACCTTACTATTGAATCCAAGCTGAACAAAGACGAGGTGCCGG
TATCCGCCTTTCAAGTGAGAACAGGAGATGGTTCAAAGCCGATCTTATTTTGACTTTGAGTCGAA
AAATACGGTCTTTTCTCCACCGGAACTACATACAAGCAATCATGA


Right flanking sequence: Indices 72250 -- 72749
CTCTACCTTCTAGTCTTAGGAACTGGTCTTATGGTGCAGCTAGCTATCCCATATCTGCCACCATC
CCCAAAGAAAGAGGCAGATGAATCAGAATAGGCTCAAGGGGTAGAAACAATAGGTAGCTCCTCAG
GCTTGAGAACAAGGGTTTTCGCCTAGTAAGTGCTTATGAAAGCCTCTTCCTTTTGGTTAAGTGCT
TATGAAAGCCTCTTCCTTTTGGTCCGGTAATGGGGAATTTGCCTTTACTGTCCTGTCTTGAGAGC
TTGTTTAAGTCTTCCTTGCTTTTGTTTGTGGGAATGTAGACAGAAGATTCCTATCGATAAGGAAA
TGGCAAGCTTTCCCTCACTACACTGCCTATAACCACCAGCATCATCATCTAAGTCAACCAGGGAG
TGAAACCGATTAATTGAATACTTAAATGTGGAACTAGATGTCCTCAACAACACCTTATGGGCAAA
CAAGTAGATAGCATAGTGTAAGTAGGAATGGAAGATGTTACCGAA



Found at i:72444 original size:31 final size:31

Alignment explanation


    Indices: 72406--72467  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

      72396 TTTCGCCTAG

                                           
      72406 TAAGTGCTTATGAAAGCCTCTTCCTTTTGGT
          1 TAAGTGCTTATGAAAGCCTCTTCCTTTTGGT

                                           
      72437 TAAGTGCTTATGAAAGCCTCTTCCTTTTGGT
          1 TAAGTGCTTATGAAAGCCTCTTCCTTTTGGT

      72468 CCGGTAATGG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42


Consensus pattern (31 bp):   
TAAGTGCTTATGAAAGCCTCTTCCTTTTGGT

Left flanking sequence: Indices 71906 -- 72405
CCAACAAATGGCTACTGTCCTAAAACCCATGCTGCTTTCGGATAAGCAAGGAAGAAGGAAGCAAG
ACAACAATAATCCGTAAGGTTGAGCCTTGGAGTGGTAGCATGTCGGACTCCGCTGTTCGCATCCT
TTTCCAAAGAAAGAGCGAGCAACCTTACTATTGAATCCAAGCTGAACAAAGACGAGGTGCCGGTA
TCCGCCTTTCAAGTGAGAACAGGAGATGGTTCAAAGCCGATCTTATTTTGACTTTGAGTCGAAAA
ATACGGTCTTTTCTCCACCGGAACTACATACAAGCAATCATGAAACTGGGAAACTAGCCTTTTAA
CTGGGAAACTAGCCTTTTACTCTACCTTCTAGTCTTAGGAACTGGTCTTATGGTGCAGCTAGCTA
TCCCATATCTGCCACCATCCCCAAAGAAAGAGGCAGATGAATCAGAATAGGCTCAAGGGGTAGAA
ACAATAGGTAGCTCCTCAGGCTTGAGAACAAGGGTTTTCGCCTAG


Right flanking sequence: Indices 72468 -- 72967
CCGGTAATGGGGAATTTGCCTTTACTGTCCTGTCTTGAGAGCTTGTTTAAGTCTTCCTTGCTTTT
GTTTGTGGGAATGTAGACAGAAGATTCCTATCGATAAGGAAATGGCAAGCTTTCCCTCACTACAC
TGCCTATAACCACCAGCATCATCATCTAAGTCAACCAGGGAGTGAAACCGATTAATTGAATACTT
AAATGTGGAACTAGATGTCCTCAACAACACCTTATGGGCAAACAAGTAGATAGCATAGTGTAAGT
AGGAATGGAAGATGTTACCGAACTAATCAAAGTAGCTCTGCCAGTTCCCCGTTCGTGATTAGCTC
GAGAAAAGACCTGTTAGCAAGTCCCTATTGAAGGAAGGCTTCTTGTTCTTTCTGCTTCGGGATTC
TCGTCTTGATTCGATTATCGGCTGTCGCAGATCGTCTTCTAAATCGACCCTTGCCCCCTGCCGCC
TACGAGGGCCATTTCCATCTCTGCTTCTCTTCCGTACAGGTATAG



Found at i:78369 original size:21 final size:21

Alignment explanation


    Indices: 78343--78384  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      78333 TAAGCCGAGC

                                 
      78343 CAAAGCAAAGTACTTCAGTTT
          1 CAAAGCAAAGTACTTCAGTTT

                                 
      78364 CAAAGCAAAGTACTTCAGTTT
          1 CAAAGCAAAGTACTTCAGTTT

      78385 TAGGATTTCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29


Consensus pattern (21 bp):   
CAAAGCAAAGTACTTCAGTTT

Left flanking sequence: Indices 77843 -- 78342
GTATTTCTCAATTAGTCAGATGATTACTCGACATTAGATTCTCGTTCTACAACTACAACTGTAAC
TGGAATTGGGTAAACATGAATTCCTAAACATTTATTCATCGTTAATAATAATAATGAAAGCGCTT
AACAACTGGAAATAAATCCCATTATCTTTCCTCTGTGGGTTACCGAAGGGGATGAAACCAAATCT
CCTCAAAAGGAATTCTATGAGTCCCCGAATCGGCTCTTTATTTATTTTTGTGTGTAATCTCTTAT
AAAAAGCTGTTGCTATCCTTACTCGTTGAGCTAATAGGTACTCGCCTTCTGTCACTTTCGGAGAA
TCGACTGTTATCGGCGAATTGACTTCTTTCTGGAGCCTTTTCTAGCTTTCTAGTTTCAAGAAATA
AATCGAATCAAGTGGTCGTGTGTCACCCTTCCCAAGAGTATGAGAATATCCGATGCAGTTAGCTC
AAAAGGGGGTTCGCTCAGTGACCCAGTTCTTTCTTTAAGCCGAGC


Right flanking sequence: Indices 78385 -- 78884
TAGGATTTCCTCTTTCCCTTGACTGTTAATGTGAGCTCTTCAGACTCAGACTACTCTTCCTCATG
GGAATCAGAATCTTCATTTCCTACTCGAACCAGAATTTAGAACCCCGGGGCTAGAAAGAGGGATA
GTGCTTTAATTGGTTGTCGAGGTAAAGGGTTGGGGTGACGCTCTATAAGAATGGGTAAAACAATG
GCTTTTTGCTTGTTGTAGTGGAGTTCTACTTCTTGAGTTGGATGTATTGATTCGTCTTACGTAAG
TTTCTTTGATTCTTCGCCTATCTATCGGTTCAAAAGAATTCGTACTGTGAGCTGCTAACGTGCAG
TTCGACTTACTAATACATCTCCTTACCCTTCTCCTTCTATGGCATTTATCCTTTATTTAATTGAT
TTCCAGTTAAGAGTCATAGGAAGACTGAATCTATCCCCTAATGAATGTCCGCTCCGACAAGATCT
GTCTTTAGATTTATAAGTCAGAAGTGCCCTTACTATTAAACTAGG



Found at i:79280 original size:16 final size:16

Alignment explanation


    Indices: 79255--79292  Score: 67
    Period size: 16  Copynumber: 2.4  Consensus size: 16

      79245 CTGGCTTAGT

                 *          
      79255 AGTTGTAGGGCAGGAC
          1 AGTTGCAGGGCAGGAC

                            
      79271 AGTTGCAGGGCAGGAC
          1 AGTTGCAGGGCAGGAC

                  
      79287 AGTTGC
          1 AGTTGC

      79293 CCCTAATCTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.24, C:0.16, G:0.42, T:0.18


Consensus pattern (16 bp):   
AGTTGCAGGGCAGGAC

Left flanking sequence: Indices 78755 -- 79254
TTATCCTTTATTTAATTGATTTCCAGTTAAGAGTCATAGGAAGACTGAATCTATCCCCTAATGAA
TGTCCGCTCCGACAAGATCTGTCTTTAGATTTATAAGTCAGAAGTGCCCTTACTATTAAACTAGG
TTGCAATAGCTCGCTGACTTGACCCTATCAAGGTGACTTTACATTTTCTCAACGAGAATCTTCTT
TAGCAAGTAAAGACTACAAGCAACTACAGAAGACTCACCTTGGGCTTCTTTCTTTGATTGGCCTA
GCGTTTTTCGGCGCACTGAAACCCTCCTAGCTGCCGTTGTTAGCACTATCCCTCCTTTCTCGCAC
TCACTCGTCAGAGTGGTTTTATCTCTTTTCGACTGTTCGCCCAGCGGCTACTATTTAACGTCCTC
TTCTTAGCTATCGCGGCTTGCTCTCCTTCGCTTTCCGACTTCACTTCTCAGCTCTTAGTATTATG
TATCGTTGCTTCGATAAGATCTCTCGCTTTGTCGTCTGGCTTAGT


Right flanking sequence: Indices 79293 -- 79792
CCCTAATCTTTCGTGTAATACTTAATTTACTGGGGAATTCCCCTGAAAGACTATCCATAGTTGTT
CGCAGCGTAGCAGCGATGAAGCACCTATAAATACTATTATTCCTATTAAGTCAGGTCATTCAGAT
ACTTCTGTAAAATCATAATCACGAATAGCATATCGCCTTCCCCGCCGAGAGCCAAGGACTCTTCT
TAGCATTGCAGATAGAAAGTCATCTTTGTCGCATAGCTTACATCTTTGATTCCTTACTCATTCAC
GGCTCATGGTTGAAAAGCATTGAAATAAGATAAGAAAGGAAAACAGCTGCTCTGCGGCATAACCA
GTCTTCCATCCAATTGAATGACTATCCTTTGTATCGGCAAATCGAGGTTTCAACTTCACAATAGG
AGCAAAGAAGAATAAGGTTAGAAGGGACCGCAGGGGATGAGCCGTTAGGCGAAGGAGGTTAGCCT
TAAGGGGTAAGCGAAGGGATAGAAGGGAAGGGTTTTGAATGCAGA



Found at i:81432 original size:17 final size:17

Alignment explanation


    Indices: 81410--81443  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

      81400 GTGGGCAGAA

                             
      81410 GAGGACCAACAATTTAT
          1 GAGGACCAACAATTTAT

                             
      81427 GAGGACCAACAATTTAT
          1 GAGGACCAACAATTTAT

      81444 CATGCCCTCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24


Consensus pattern (17 bp):   
GAGGACCAACAATTTAT

Left flanking sequence: Indices 80910 -- 81409
TTTAGACCTATTAGTCTAGGGAACACTTGCTACAAGCTGCTTACTCAAATTATTTCTAACCGCAT
CAAGGTCTTTCTTGATGATCTCATTAACCCCATGCAAGCTGCTCTTATCCCAGCAAGAAGAGCCT
CGGATAATATCATTATTGTTCAAGAAACTATTCATACAGCTAGAACAAGCACCTGTAAGGAGGGT
TGTATGGCCATTAAAATTGACTTGTAGAAGGCTTTTGACAGACTTGAATGGAGCTTCATCCGTGA
GATGCTTGTCTTTTTAAATTTCCCTGCCAGCCTTATTAATCTCATTCTTTCTTCCATTTCCTCCC
CTAACCTGGCTGTGCTTTTCTTTGGTACTGCTTCTGAACCCTTTTTGGCTTCTAGGGAGATTAGA
CAAGAAGCTCGAGCACCCTATATTAATCATTCTGTGTATGGAGTATCTCTCCCTTGGTATTGAAA
AGGAGGTTCAAGAGGGGAACTGGAAACCCATTAGAGTGGGCAGAA


Right flanking sequence: Indices 81444 -- 81943
CATGCCCTCTTTGCGGATGATGTTATTCTTTTTGCTAAAGAAAATGACAGTAATTGCCTGACCAT
TCTTAACACTCTCCTGAACTTTAGTGCTAGATCGGGCCAAAAGGTTAACTTTGATAAGACTAGAG
TCTGGTTCTCCCCTAAAGTGGGGGCTGATAAAGCTAGGGACCTAACCAATTTCTTGGGGTTTAAG
AAAACTGATAACTTGGGGGTTTATCTGGGTACTCAACAACGGGTTAATCCGAAGTTAGTTGCTTG
TGAGACTCCCCTCCCCTGCTTTCAACAGCTTTAGCGAATAGGAAGGCTACGAGAATAAATTCGGT
TCAACCAGGGGAATACCCAGGGTTATCTCCGGGCACCATGAATCCCCATGAAAGAAGAAGAGGAC
TAAGTGGATGAATCATTTGGAAGAAGTTAAAAATGAGACTTTATCATCGACAAGATCACTTTACC
TTTTATTTAGTATAGTAGGATTTACCTTCATCTTCACTTAACTGC



Found at i:83552 original size:26 final size:26

Alignment explanation


    Indices: 83516--83567  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

      83506 AAACCCCGGG

                                      
      83516 TATGTGTTTATAACGGACTTCAATGA
          1 TATGTGTTTATAACGGACTTCAATGA

                                      
      83542 TATGTGTTTATAACGGACTTCAATGA
          1 TATGTGTTTATAACGGACTTCAATGA

      83568 AATGCTCTAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38


Consensus pattern (26 bp):   
TATGTGTTTATAACGGACTTCAATGA

Left flanking sequence: Indices 83016 -- 83515
GCCTTGATGGCGTCTTCGAGTTCAATGGCCTTTGTGATAAGCATCTTCGGTTCTGTAGTCTTACC
CATCGACCTTTACGAGGAATCTAATTCGCAAACTAGCACTCGAGATTCCATCGATTATGCATTAT
GGCCACTCGAGATAAAGATCTATTTCGTAAGACGAATCCCAGGAAAAGGTCTTCCCTTTGACCAT
TGAAACCCTGGGACAAGTCGCGGATTAGGATCTGTAACTCACCTGAAACAACTGGTAGACAGACT
GACTGAGCCACCACGTAGAGCTCCCCTCGAGCCCTTTCCCCAATCGATCGGGTATACTTTTCTCT
TAGTCTCGGAGGCAGATAAAGGGAGTGGAGTCAGTCTTCCTAGTTCTTACTTCGGGTAAGGGAAT
TCAGTTTCGGATTCAGCTTTAACTCTAGAGTCCTATTCAAAGGTCTTGTCAGAGATGCTATAACT
TTCAACATCAGCTTGAACTGAAGCAGGAGATTTAGAAACCCCGGG


Right flanking sequence: Indices 83568 -- 84067
AATGCTCTACTGCCTGCCATCAAAGCAAAACAAGACCAAAGCAAAGTCTAAAAGCGTTTTTAAGC
ACCTTGATATAGGATTCCCGTCAGCTATCTGAAATTCGATTTATTAACGCACACGATCGATTGGG
AATTGTGCTGCTAAGGTTCTCGCAGAAACCAGTACCGGACTAAAATCTCTTCCCTAAAATCTCAA
GTAAGAAATCCTAATATTCTTAAACCCTGAGACTGGGAATAAGATAAGGCTCTGCTAGCCCTGCC
ACTTAAACCGGAGACAATCCCTGGCCTATGCGCCCGTTTGTTAACCCAGCTTGGATAGGTCTACC
CTCACTCCAATGCCTCTAAATTACCTATGGATAGGGATTAGTCCGAGAAAGTTGCTATTTTTTCT
CTTTGCCCATATATTGAATCTGACTCTCAAGCAGGTAAATCCTGGCTGGCAGCCTAACTAGCAGC
TTAGCTTGTAAGGCAATAGACGTAATGAATAGGGAATAAAGCTAG



Found at i:92637 original size:17 final size:17

Alignment explanation


    Indices: 92615--92684  Score: 140
    Period size: 17  Copynumber: 4.1  Consensus size: 17

      92605 CAGCTTTCTA

                             
      92615 CATGAGAGACATATAGG
          1 CATGAGAGACATATAGG

                             
      92632 CATGAGAGACATATAGG
          1 CATGAGAGACATATAGG

                             
      92649 CATGAGAGACATATAGG
          1 CATGAGAGACATATAGG

                             
      92666 CATGAGAGACATATAGG
          1 CATGAGAGACATATAGG

              
      92683 CA
          1 CA

      92685 GAGCTCGAGA


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   53  1.00

ACGTcount: A:0.41, C:0.13, G:0.29, T:0.17


Consensus pattern (17 bp):   
CATGAGAGACATATAGG

Left flanking sequence: Indices 92115 -- 92614
ATTGTAGATTCCTTTTGGGAGGACAGGAGAATAAAAGAGAATGAATGTTTTACGCTTTCTCGATC
AAACTAGAAATATCATTCATAAAGTAGTTCATTGAACTGGGAATCTATCTGTTTGGAATTTATAT
TGCTTTCTATATCTGATTCTTGGTACTCGGATGCTAACGAGCATAGGTTTAGAGTTAATTTCACA
AGGCTACGAAAGAACTAGAAACTAGAAAGTAAAAGGCGATGAAGATGCCGAACGAGTAAGGTCTA
GCGTTGAAGGAAGGAAAGGTAGAAGGGAAGGCTATACCGGTCAAATCCCTAAGCAATCCCGAGCT
CAAGTTCATTGAATCGATTAACTTACTCTGGATCTCAGCGGTCTTTTAAACGCGTCAACATATCT
ATGATGGGTATGATCTGGAGCCTATAAACGTGCGATATAGTTTTAGTAAATGTCCTCCTAGTCTC
CACGAGAAGTCCTTTCCCGATCTCAGTCTCAGGATCAGCTTTCTA


Right flanking sequence: Indices 92685 -- 93184
GAGCTCGAGAAATACCATGGGACAACCAAGGAGCAGGCATTTCCCAATTACCAAGGATTGTTGGA
TTTCTTTCTTTTATAGTCTTTCTTACTTCCCCATTCCCGGCTACAGCAATAGCTGCAGAGGAAAT
TTATTCACTCCCTTGTACTGTTCGATTGACAGTTCAGACACCAGAACCGGTATGAAACCTAAAAT
GAAAAAGGAGCTATCCCAGGGTTTCAGACAGGTTAGTTTCTTGAGAAAAAGATGGAAAAGATGTT
GGAACTTTGGACATAGACTCAAGGGACTAGAAAAAGGATAGCTCACAAGGTTACAGCAGACAGGC
GAGTTGGAAGAGAAAATCAAACCTCAGCTGACGACTCATAGGTGGACTCATACAATCCAATCAAT
CGTACTCCTTACTTCTCGTATGCTTATTGATTAGGGCGAAGAAGCATCGAAGGTTGGGTTTAGAG
CATAGCTTTCTATTCCCGTTCGTGTGCCAGGGAAAATAATCAATT



Found at i:104496 original size:28 final size:28

Alignment explanation


    Indices: 104456--104511  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

     104446 ACAGTCTCGT

                                        
     104456 CACATACAGTAGAACTCAATCTATTAAC
          1 CACATACAGTAGAACTCAATCTATTAAC

                                        
     104484 CACATACAGTAGAACTCAATCTATTAAC
          1 CACATACAGTAGAACTCAATCTATTAAC

     104512 TCAGGGTAAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.43, C:0.25, G:0.07, T:0.25


Consensus pattern (28 bp):   
CACATACAGTAGAACTCAATCTATTAAC

Left flanking sequence: Indices 103956 -- 104455
AACTGAGTTAGGAAGCATGTCGGGTACAAGAGAAAAAGAATGTGATCTTCAGGTGAAGAGTGAGC
TAGGCAGTCATTCTCCTACTCCTTTCAATGTCTGCTCCTCTTATGTAAAATAGGAAGTCGTACTT
CGAATCTGCTTATTCAATCTCTTGTCCAGAGTCAAATATCACTCCACCAGGGCTGTTGTCTTTCG
CGAAGCAAGAAGGAGTCAGTTTATCAATGCGCTACGCTAATCATCACCATTGAGTGTTGGAGCAA
GAATTCTATGAAAAGGGGAGTTATACTTTCTAAAAAGCCACTGAAATCGAGTACATCGAGATCGA
GAGATCTTCGTATTTTTTCGGTCTACAGGTCGCGCATCAGTCCCATATGTTCCCATCGATACAAG
ATTCGGAAATGATTTGTTGCAATCTTTGACTGTGGAAGGAGATCCGCACTAGGCTGAAATTGGTC
CTTTTCCTTATATCATTGAACAACTTCCAATAATTACAGTCTCGT


Right flanking sequence: Indices 104512 -- 105011
TCAGGGTAAACAAACGCTTTCTAACAGCCTATTGGACCTAGCAAGTAAAGCTGGAGTAGAACGCA
AACTGGATAAGCGAATCAAGTGATTTTTTCACGAATTCTAGGCGGTTGTAGAGGGATTAAGCATT
CCTTTGAACGCAATGAGAAGATCTAGGGTAGAAAGTAGCTCCCCTGTAGCTCAAAGAAAGTCTCG
TCCCGACCTGGGGTTGGCTTGAGAAGGAGAGTCTCGCCGGTTGTTAACAAAACGGCATGGAAGGA
AGCAAAGATGAACCGCCTTGGGGGGAATAAAGAATCTGAATTGTAGGGTGGGTCCTTAACACCAA
ACTACCTTCTCTTCTCTTCTAATCCAGCTACGAAATATCGATTTGAAGGCTAAAATCCAAGGTAA
GGTTTTGAGCCAATCAAGTAAGCGAGTACCTGTATCCGTCCCTGTTGTAAGTAGTGGGAGTAAGA
AAGGGTTAGTTAATTGAATTTCCTTCAAACCTATCAGTGTGAAAT



Found at i:105634 original size:24 final size:24

Alignment explanation


    Indices: 105607--105655  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     105597 ATGCCAAACT

                                    
     105607 GATTAGCTAAGAGAATCACTTGGA
          1 GATTAGCTAAGAGAATCACTTGGA

                                    
     105631 GATTAGCTAAGAGAATCACTTGGA
          1 GATTAGCTAAGAGAATCACTTGGA

             
     105655 G
          1 G

     105656 TAAGGCTTTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24


Consensus pattern (24 bp):   
GATTAGCTAAGAGAATCACTTGGA

Left flanking sequence: Indices 105107 -- 105606
ATGTCATTGTAAGTGATCGGAAAGTTATTGTAAACCACCAAGAATTGACAAGCATTAGTCAACAA
CCAAGAAGACAAAGTTCATTACTGCTACGGAAGCTGACCAAATACCAAGACGTTAGAGAGAGAAG
GAAAACAGTAAACCCCGGATGTATTCTCTCGAGCCACGAACCGGATTACCAAAGTCACGCTCTTG
CCCTAAGAAGTCGGCCTGGTTGCATACAGACCTTGTAAATCATTCAAACTAGCAGTGTAGCAATG
TTGAGGAAGATCAGATGGTAGAAAGAAGATCATCTGCTGAGGAGTGTCCAGCTTTTGCCAGAGAG
TCAGCTAAGCCATTACTTGTCGTAAATGTGATGCACTTGTTTGCCTTGAAGAAGGTTCTTGATTT
GTCTTACTTGATAGTGAATCTGCCAAGAAGTGTTAGAGAAACCTGAGACTGCATAGCATTTGTGA
AAGCTAAAGAGTCCCTCTCTATGTAATTAAGTGTAATGCCAAACT


Right flanking sequence: Indices 105656 -- 106155
TAAGGCTTTAGCCTCCGCCTCCATTTTCTTTTTCCCTGACTACGCTTATTGAAAAAATGGGTTAA
AGAGGGGGCTACCGTGGCCACCTACTTCTTTAGAATGCTAAACAATGACACCTGCTGAGTCTCTA
ATGCAGCTATCTCCGGCACTTGCAAGAAAAATACGGACCTTTTTATGCACATCCCTTTAGTAGTT
ACCTCCAACCCCCCGGTCTTCTGCCTACCCTTGCCTCCGGTGGTCTTTTCAGAATCAAAAAGAGT
ACTGAATGAAAGCCCCCACATACTACCCATTTCTCTCTTATCTTACTACGCAGCTGTTTGAGATA
TAAAAACTGATCCCTACGCCCATGTTCCGAAGCCGAGGCATAGACACAAGACAAGCATATCTCCG
TTAGCAAGGAAAGCGCATACACCCTTGCCAAGCTAGAAAAATTCCCATCGCAAGCCATAAAACCA
GTAAAAGAGTCTGAGACAAGAAAGGCTCACTTCCCACCCAACGGT



Found at i:120141 original size:32 final size:32

Alignment explanation


    Indices: 120100--120164  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

     120090 ATCTATTTAT

                                            
     120100 TGTTAGACTGTTTAGAGACACTAGCTTTACCC
          1 TGTTAGACTGTTTAGAGACACTAGCTTTACCC

                                            
     120132 TGTTAGACTGTTTAGAGACACTAGCTTTACCC
          1 TGTTAGACTGTTTAGAGACACTAGCTTTACCC

             
     120164 T
          1 T

     120165 TTTCAGCAGC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35


Consensus pattern (32 bp):   
TGTTAGACTGTTTAGAGACACTAGCTTTACCC

Left flanking sequence: Indices 119600 -- 120099
GGTGGGCTGCTCATGGGGTCTCGTATCGCCGTAAGCCTATCTATAGTTTTTTTGGTTCGGGTGAG
GAAAGTGAAAAAGCACAGCCCTATATCAACGAAATAGATCTTTGATTGAGCGCAGAAAAGGGGTT
CGCGAAATCTCACATGAAAAAGAAAGCTTCCTTTCTTTGCGTCTACCCGTATTACCCTTACATAA
GTGGACATAGAGCAAAGACTCTTCTATTCTTTTCCCGGCTTATCTCCATTACATAGTTGGAATAA
TCTTTCACAGGAGTATTAAGGGTTGGTACCATCAACACATCTGATCGTGGGTTATGATTTGACTT
AGAGCTGAGTGAGAGAATGCGAGTCTATACTATACTATACTACTATATTATTTGTTTAGGACTTG
ATTGTTTATCTGCTTTTATATGACTTCTTTCTTTATGTGAAGTAGTATTACTTTGATTCTGCCTC
ATCTTCATAGTCCACTGTAGTCTGCAAAGCTGTAAATCTATTTAT


Right flanking sequence: Indices 120165 -- 120664
TTTCAGCAGCAGAAGCCTTCCCACTAGAGAGAGGGTTCTTCTTTTCATAAAGATTCTTATCAACA
ACCATAACAGCATCATTCTGAGCAAAATTGGTCTGTACAGTATCAACCTTAGTAGTTTTTTCCAC
TTTTGGAGATGTAATAATAGTCAATCCCACATACTGAATTGAAGTATTTACAACTGGGGAGTATC
TACAATCTTGTTAGTTTCATCTATATGTACAACCTGTGTAGTAGTATCAGGCAATTTCTTAGGAG
TCCAGCCTTGCTTACTAGGTTTCTAGGGGGCTGTAGAGCAGTCAGCATGCCCAAATATCTTTCAA
AGATTGCATTTTGTAGGTCTCCATGGAACTTCAATCTCAATTGTAGCAAGAATACCATCTTTAAG
CTCAACATCGACCTTACTAGGAATTTGAGCCTCTAAATCAACTTCAATACAGACTTTAGCTATTT
CAAGTCTCTCTTTCATAGCTGTGGCTCTGTCCATATACAATGGAT



Found at i:129923 original size:29 final size:29

Alignment explanation


    Indices: 129888--129951  Score: 119
    Period size: 29  Copynumber: 2.2  Consensus size: 29

     129878 CAACAAGATT

                                         
     129888 GGTAGATGAAGTTCAATGGTCTAAGATCA
          1 GGTAGATGAAGTTCAATGGTCTAAGATCA

                                         
     129917 GGTAGATGAAGTTCAATGGTCTAAGATCA
          1 GGTAGATGAAGTTCAATGGTCTAAGATCA

             *    
     129946 GATAGA
          1 GGTAGA

     129952 CTTCGGGCTC


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   34  1.00

ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27


Consensus pattern (29 bp):   
GGTAGATGAAGTTCAATGGTCTAAGATCA

Left flanking sequence: Indices 129388 -- 129887
AACATCGTCATTAAGACCAGTCTCGAGAAGACTTCAGAGAAAGAGGAAGAAAAGAAAGGTAGCAG
TGTAATTAGGGTGGACTCAACTTCTACATCCCTTTTCTATGGATCAAAGTTTAGAGAAGCCACTA
GACATAGATATTGAGATGGGAACTGTCGTGCCTGATAGTCAACCTCCTACTAATGGCGGTCAGAA
CCTTACTGATGCGATAATGCTGGATGATGAAACTCAACCTGGGGAGTATTTCCATGGTACACAAG
ATAATGGTAATTATGAACCCGATGTTATGCAACAGTAGAGGCGCTGGTCGCAAAGCTTTCCTAAA
TAATGTTAGAGATATGATTGGTTGGACTAAACCAAATATCTTAATTATTGTAGAACCTCGTGTCT
CTGGTAACCGAGCGAGGAGTCTTCTTTGATGAACTTGCATGAAGGAACTAACCCGTCCGCTGTAA
CCTAACCTTGAGATAGCTCCTTCTTCCTTATCCCGCAACAAGATT


Right flanking sequence: Indices 129952 -- 130451
CTTCGGGCTCGTCTTCGGGTGATTCTGCAACGGGTATCCCAAGTCTAGCTACTGCTGAAGCGATA
GGAGAACCATCGATCGTAAAAGAATCAGCAGTTCACAAAGAAAGAGCAGGTCTAACCCTACGCTA
CTAATTCTCAGCTCTCCGCTTTCGCTCTTATCAGCTTCTGCGCCCCCGCCCCCTTCGGCTATCGA
GTTCGATAAGGTTCTTTCTGACTCGAAGAGAATCCAATTCAAAAGGAATGAATCAGCTCGTTAGC
TAATCAATTAATCTAAAAGTTCACGACTCTAGCTTGGGTCCATGGATGATCGCCCAACGGCGAGG
GAGAAAGCCAAAGAAGGCAACTGCTACAAATGGCAAGAGTGATACGGGGAAGGATTCTAGGCAAG
ATTTTCGTATATAATATTTTCGTAAGTAGTGAATGAAAGTTCATTTGATTCTCTTTTTAAAAAGA
TATCGGATTTCGTCGTCAAGGCATAGGGCTTTTTATCGAACGAAA



Found at i:131325 original size:17 final size:17

Alignment explanation


    Indices: 131303--131337  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

     131293 ATATGTAATA

                             
     131303 ATAGTGAGAAGGTTTCT
          1 ATAGTGAGAAGGTTTCT

                             
     131320 ATAGTGAGAAGGTTTCT
          1 ATAGTGAGAAGGTTTCT

             
     131337 A
          1 A

     131338 ATGGCTATCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34


Consensus pattern (17 bp):   
ATAGTGAGAAGGTTTCT

Left flanking sequence: Indices 130803 -- 131302
TGGACTAGCTATAGGGTGTCCCTGCCTTGTCGAAGCACTCGTTCAATCAGTCATAATTTCTCTTG
ATGATGAATAGCGGACATTGCCATGAAAGGAGTAGGAAGGCAGAATCTCTCTGACTTCATTCACA
GGATATAGCCTGAAGAGAGAGTGACTGTCCGGATTCCGCCGGAAAACTAGACCCGATGTCGGAGT
AGGATTCCTATATACCAGTAGATAACCTATCACTGCTAATTCCATCTTTTAAAATACAAATAATA
TGACAAGCCAGAAAGAAAGCAAAGGTTGTTGCTGTGAGAAAGAAAGAAGATCACTGTGAAACTGA
GACAGTACCAACCACATCTAGCTGACAAGACAATTCAAGCCCGTACCCGGACAATCGAGTTTGGT
AAAGGTATGGGATCTCTCCTACAATCCATCGGCATTTTCTTCTTTTACTTGTCGGAAGTACCTAG
GATAGCGGACAATTCACCAATAGCAGCATTCTTTTATATGTAATA


Right flanking sequence: Indices 131338 -- 131837
ATGGCTATCAGATAGCAATGAGTGGACTGGCGCAAGCAATTCTTTCTTTTACAGGCATTGCTGGT
CTTAGGTCTGGTTGGGTAAACAAGCTGGGGCATAGCTTCTATTGCTGGCTTGTCTGCCCCTGTCT
CACTTAGAATTTAGTACTTTTCCCCCTATGTCGGTTTGGAATTGAAAGAATAAATCTTGCTAAGA
AGAAGGAAGGATGCCAAAAATACATTCCTAAAAGGAGATCCTCCTAGTGCATAGAAGGCAAACGT
GGGGTAGGCCACAAGTCCCGACTTCTCTCGTCTTAGTGTAGTGGAAATACAATACCCGATTGAAG
GAAACCCAATAGGTTGAGGGGGGCAACTCACTGATTTTCCTGGAAGGAAGACCAGTACAGCGTAC
TTTCATAAGAGCAAGGCGATCTTGAAAGGAAGAAGACTTTTTCGCAGTCCACTACGCGTAACTAG
ATGGGAATAGCTCATGCCCAGCTCGAGGGAATTTCCTCGAAGATA



Found at i:140421 original size:15 final size:15

Alignment explanation


    Indices: 140401--140430  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     140391 TGAATCGGTA

                    *      
     140401 GCTGATTCTTGAACT
          1 GCTGATTCGTGAACT

                           
     140416 GCTGATTCGTGAACT
          1 GCTGATTCGTGAACT

     140431 ACGAGATCAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37


Consensus pattern (15 bp):   
GCTGATTCGTGAACT

Left flanking sequence: Indices 139901 -- 140400
AAAGAAGTCAACAGCAAAGGCAGAAGGACCTGTAGGATCAAGAGGGAATTCTTGTTCCTGAGAAT
CATCAACAACTAAACCACTTTAGATATCAGATATGCATGCAAGAATATCTATTCTAATATAAGTG
ACAAGACCTTCGCTTTCTTTACGAGCGATAGTCTCGGCCAAGCACTGGGATGATAGACCTACACA
CGTAGGCCTTTCTTTCCTTTGAGCTCCTTCCTTTCATAAGGACAAAAGTGATTTAATCTCATCCG
TAGTTTATTGGAAAACCTGGGGGATTTTATGAAAAGCTCTTTGAAGCCGAGTTATCTTACAACCT
ACTTGCCTTACTTTCCTTTCTTTCCTGTTGATTTCTTATTAATCAATCCGCTTGAGAAGGCATAC
TTTTTGTCATTCTTAGTAGCTACAGGCTCTGCAATGAGGCGGATCTACTAGGCTTTCGGGTGACC
CTTTCATCGCTTTCACTATTTCGATTTCATTCCTTTGAATCGGTA


Right flanking sequence: Indices 140431 -- 140930
ACGAGATCAACCCAAGGCAAAGACTCAACCGAATGAATCCTGCGCTCTTACACCCGATTTCTAGA
TCCAACAAGGAATGAATCCGAATAAAATACTAAAATAAGATGAATTAGCAGAAGAAAGAGGCATG
GCATTCTTCTATAGAAAGGGGCATGGCATTCTTCTATCTTGCCTAGTTGTTTTCTTTCTTTGGGG
AAGACCCGAGATCGCTAGATCAATCAGCTTGAGAACTCGTCCAAGGAAAGCAGACCGAAGACAAA
ACCTTATCCAACTCGGGAGCTAAAAGAGAGTGATAACTCCACCTATGCGATTCCGGTACCAGCTA
AACCAGCAAAAGCTCTATCCTTTATCTAGTCCCTGGGGCTAAGGGAGAGGGACCGCATTCAACTA
GGGTCACTCGATCGATCATACAGCCTTTCCGATAGACCTGCCTTTTTTACTGGCGCTACCGTACT
ACCTTTTTTGAGCGTTAGCGGCGATAGATAGGGTGCACTCGATTT



Found at i:140583 original size:25 final size:25

Alignment explanation


    Indices: 140548--140597  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

     140538 AATTAGCAGA

                                     
     140548 AGAAAGAGGCATGGCATTCTTCTAT
          1 AGAAAGAGGCATGGCATTCTTCTAT

                  *                  
     140573 AGAAAGGGGCATGGCATTCTTCTAT
          1 AGAAAGAGGCATGGCATTCTTCTAT

     140598 CTTGCCTAGT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28


Consensus pattern (25 bp):   
AGAAAGAGGCATGGCATTCTTCTAT

Left flanking sequence: Indices 140048 -- 140547
TTTACGAGCGATAGTCTCGGCCAAGCACTGGGATGATAGACCTACACACGTAGGCCTTTCTTTCC
TTTGAGCTCCTTCCTTTCATAAGGACAAAAGTGATTTAATCTCATCCGTAGTTTATTGGAAAACC
TGGGGGATTTTATGAAAAGCTCTTTGAAGCCGAGTTATCTTACAACCTACTTGCCTTACTTTCCT
TTCTTTCCTGTTGATTTCTTATTAATCAATCCGCTTGAGAAGGCATACTTTTTGTCATTCTTAGT
AGCTACAGGCTCTGCAATGAGGCGGATCTACTAGGCTTTCGGGTGACCCTTTCATCGCTTTCACT
ATTTCGATTTCATTCCTTTGAATCGGTAGCTGATTCTTGAACTGCTGATTCGTGAACTACGAGAT
CAACCCAAGGCAAAGACTCAACCGAATGAATCCTGCGCTCTTACACCCGATTTCTAGATCCAACA
AGGAATGAATCCGAATAAAATACTAAAATAAGATGAATTAGCAGA


Right flanking sequence: Indices 140598 -- 141097
CTTGCCTAGTTGTTTTCTTTCTTTGGGGAAGACCCGAGATCGCTAGATCAATCAGCTTGAGAACT
CGTCCAAGGAAAGCAGACCGAAGACAAAACCTTATCCAACTCGGGAGCTAAAAGAGAGTGATAAC
TCCACCTATGCGATTCCGGTACCAGCTAAACCAGCAAAAGCTCTATCCTTTATCTAGTCCCTGGG
GCTAAGGGAGAGGGACCGCATTCAACTAGGGTCACTCGATCGATCATACAGCCTTTCCGATAGAC
CTGCCTTTTTTACTGGCGCTACCGTACTACCTTTTTTGAGCGTTAGCGGCGATAGATAGGGTGCA
CTCGATTTCCTTCCTTACGTACTGGCGAGAGGGGGAAGACATTTGTTAACCAATCGAAGAGAGAG
GAAGGTGGCTCATAAGTATAAGCCCTTTTCAGAATCAGTGAAAGGAAATCAGAAAAAGGTAATTT
GAGAACGAAATCATCAACTTCGATAACTCACATCATGCGGATCCT



Found at i:147263 original size:15 final size:15

Alignment explanation


    Indices: 147243--147293  Score: 61
    Period size: 15  Copynumber: 3.5  Consensus size: 15

     147233 CAAATAACTT

                           
     147243 AGATAAGAATCCTCA
          1 AGATAAGAATCCTCA

                       *   *
     147258 AGATAA-AATAACT-T
          1 AGATAAGAAT-CCTCA

                           
     147272 AGATAAGAATCCTCA
          1 AGATAAGAATCCTCA

                   
     147287 AGATAAG
          1 AGATAAG

     147294 GGGATTCAGT


Statistics
Matches: 29,  Mismatches: 4, Indels: 6
        0.74            0.10        0.15

Matches are distributed among these distances:
  14   11  0.38
  15   18  0.62

ACGTcount: A:0.51, C:0.14, G:0.14, T:0.22


Consensus pattern (15 bp):   
AGATAAGAATCCTCA

Left flanking sequence: Indices 146743 -- 147242
GGGACTACCTTAGGATTTCCTCACTGATTGAATAGCGACCTTTTCCCTATCGATCGAAGGAAAGC
ATGCCGCGAGCAATCTTTTATACGATCGTGTGCTATAGACCGGGGGTGCCCCATTACCTATTGAA
CATCCATCTTTGCTTCCATCAGAAAGAACCCGCCCTTAAGATCTTACTTTGCCCCGCTTGGTTGG
AGATGGGCTTTTCGCTTTCCAATTAGCATCTCGCCTGGCTGCTTTTGCTGCAGGAACTCTTTCCT
ATAGGCAGGAGAGCAAGGTTTTAGAGTTTGCTTTTTCAGTATCAGACTTATCTTGTTTTCGTGAG
TTAAACAAATCTGGGGAATAGGTTTGCCGCTTAACGGTTGAAGGTTCTATCTTCCAAGACCTTTG
AATAGGACTTACCTCCTTCACAACCTAGTCTGCTCGTTAAACAATCGGTTTAACTTTCTGGAGAG
GCTGTTAGGAAGGGCTGGAAGTAATAATGGGATAGCAAATAACTT


Right flanking sequence: Indices 147294 -- 147793
GGGATTCAGTCTTCCTCAACCGCACGAGGGATGGTTAGTTCCCAGGATCAGCAACTTCACAGTTC
GGGGCGGACTATAAAAAGCTCTTTCTTCTGACTCAAACAGGAAAGTTGAAAGGCAAAGACGATTC
GAGGAATTAATTTCTTCTTGGGTTGAGTTCACAGTTCGTGAGCACTTATCCATCCCATGGGAATT
TCCCTAACTACTCCAAAGCCTGCTATGCATTCTTACAACGGGACTAAAGGTCTTGCAGTTTAGTC
CGTCCTTTATCGGTTTCAACTGTTGTAGTTGTCCGCCCCAAGTCATCCCAAGTGATCATTAATGG
ACCCTCACAACCCTCTTGTAGCTTCGACTTTTGATTGATTGTAGGGCACCGAGACCTATATTCAA
GACAGTCATTTGGACAGTTCTGCGATCATTATACGCAATTAGAATTCCCAATATCGGTGCTGTCA
ATAAAGGCTTCGGATTTTCTTTTCAGAAGCTTACAGGAATAAAGC



Found at i:147276 original size:29 final size:29

Alignment explanation


    Indices: 147234--147292  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     147224 ATGGGATAGC

                                         
     147234 AAATAACTTAGATAAGAATCCTCAAGATA
          1 AAATAACTTAGATAAGAATCCTCAAGATA

                                         
     147263 AAATAACTTAGATAAGAATCCTCAAGATA
          1 AAATAACTTAGATAAGAATCCTCAAGATA

             
     147292 A
          1 A

     147293 GGGGATTCAG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.53, C:0.14, G:0.10, T:0.24


Consensus pattern (29 bp):   
AAATAACTTAGATAAGAATCCTCAAGATA

Left flanking sequence: Indices 146734 -- 147233
GGCTGGCGTGGGACTACCTTAGGATTTCCTCACTGATTGAATAGCGACCTTTTCCCTATCGATCG
AAGGAAAGCATGCCGCGAGCAATCTTTTATACGATCGTGTGCTATAGACCGGGGGTGCCCCATTA
CCTATTGAACATCCATCTTTGCTTCCATCAGAAAGAACCCGCCCTTAAGATCTTACTTTGCCCCG
CTTGGTTGGAGATGGGCTTTTCGCTTTCCAATTAGCATCTCGCCTGGCTGCTTTTGCTGCAGGAA
CTCTTTCCTATAGGCAGGAGAGCAAGGTTTTAGAGTTTGCTTTTTCAGTATCAGACTTATCTTGT
TTTCGTGAGTTAAACAAATCTGGGGAATAGGTTTGCCGCTTAACGGTTGAAGGTTCTATCTTCCA
AGACCTTTGAATAGGACTTACCTCCTTCACAACCTAGTCTGCTCGTTAAACAATCGGTTTAACTT
TCTGGAGAGGCTGTTAGGAAGGGCTGGAAGTAATAATGGGATAGC


Right flanking sequence: Indices 147293 -- 147792
GGGGATTCAGTCTTCCTCAACCGCACGAGGGATGGTTAGTTCCCAGGATCAGCAACTTCACAGTT
CGGGGCGGACTATAAAAAGCTCTTTCTTCTGACTCAAACAGGAAAGTTGAAAGGCAAAGACGATT
CGAGGAATTAATTTCTTCTTGGGTTGAGTTCACAGTTCGTGAGCACTTATCCATCCCATGGGAAT
TTCCCTAACTACTCCAAAGCCTGCTATGCATTCTTACAACGGGACTAAAGGTCTTGCAGTTTAGT
CCGTCCTTTATCGGTTTCAACTGTTGTAGTTGTCCGCCCCAAGTCATCCCAAGTGATCATTAATG
GACCCTCACAACCCTCTTGTAGCTTCGACTTTTGATTGATTGTAGGGCACCGAGACCTATATTCA
AGACAGTCATTTGGACAGTTCTGCGATCATTATACGCAATTAGAATTCCCAATATCGGTGCTGTC
AATAAAGGCTTCGGATTTTCTTTTCAGAAGCTTACAGGAATAAAG



Found at i:154789 original size:21 final size:21

Alignment explanation


    Indices: 154763--154804  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     154753 GGAATACTTT

                                 
     154763 TCAAAGTGAGTAAAGATTGAC
          1 TCAAAGTGAGTAAAGATTGAC

                                 
     154784 TCAAAGTGAGTAAAGATTGAC
          1 TCAAAGTGAGTAAAGATTGAC

     154805 CCTCTTGCTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.43, C:0.10, G:0.24, T:0.24


Consensus pattern (21 bp):   
TCAAAGTGAGTAAAGATTGAC

Left flanking sequence: Indices 154263 -- 154762
TAATTCCTTAGATAAAGCTGTTGGCTAGTCTTTACCGCGAAGTGAAACCTATTCTAAAGTCTTGG
AAGAGGTGCGAGTCTATGAGTAGTCGGTTTGGGGATGTGCTTTTCCTTTCAATCCTGGCTGACGA
GGAATCGGTGGAGCCAAGCTTCGAAGTCTTTTCTCACGTTTATTCAAGTCCGAATCTAATGGTTT
GAGCTCTTCCTCTTTTTTTAGTTTTGTATTTGTATCGCTCTTGTGAAGAAGCAGAAAAAGAAGAA
TGACCAGACACCTTCGCTTCTTACTCGCTAACTAGAAAAAGGGGAGCTCCTCGTAAAGCCCCACG
TCCGAAAGCATTTAACGCGTATTTGTCATAAGGAAAGCATACCCTTAGTTTTCCTCTTTTATCAG
CAACCCTTTTTGTTGCATATCCGACACATCACCCTCGTTCGACTGGGGAATATGAATCTAAGCGA
ATAAGCAAGTAAACCTGAGTAAGTCCGATTCAAAGGGAATACTTT


Right flanking sequence: Indices 154805 -- 155304
CCTCTTGCTAATGCCTTCCTTTAAGCTATAGGTTCTTCTCTTGACTTGGCTCAAGCAACTAATTA
ATATGCTGCAACCGAAGAGATAAGGCCAAGGGTTCAACGAGCCTCATTCCCAACTGCTAGACCAA
AGGTTACACCATCCCTTGCAGAGCCTTTCTAGTCCCTTGGGTAAAACTCTTCCGTTTCCCTTATT
GTTGAAGCACGAGAACGAACTGTCTTCAAGAGCTGAGCCAATAAATAGGTAAGTCGAAGAAGCTG
AGTACTTCTACGCGTATAAGTACGTAAAAGATAAAGACTCTTGTTTAGCGAGGTAAAGAAAAACT
CGGTATCCAGAAAGCGAAAAGCAAAGAACCGGAAGAGAAGGCTTTCTATCCGATACGCTTAGAAC
ATCCCGAGTATAAGTTCTAGTTTTTATTCCCCATCGAATAGGAAGGTGGCTTAGAAGCCGTTTTC
TTCATCAGTGAAAAGTAGACCGCCATTAATCGCCCAAAGCAAGGC



Found at i:161367 original size:22 final size:22

Alignment explanation


    Indices: 161339--161383  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     161329 GCTAACTCGG

                                  
     161339 AATCATGCCCAATCCTTTAGAA
          1 AATCATGCCCAATCCTTTAGAA

                                  
     161361 AATCATGCCCAATCCTTTAGAA
          1 AATCATGCCCAATCCTTTAGAA

             
     161383 A
          1 A

     161384 GCGTAGGGGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.38, C:0.27, G:0.09, T:0.27


Consensus pattern (22 bp):   
AATCATGCCCAATCCTTTAGAA

Left flanking sequence: Indices 160839 -- 161338
TGGTCATCTTTGATTGGGGTTCGAGCTCGATCGAGTAGTTAATTCAAATTCAGAGATTCGTGTCG
GCTTTCTTTCCTATGATCTACAGCTATAGGTACAACCCGTCTGCCTTCTGTCTAAAGGAAATGGT
AAAGCAATGCGCGCCCCTTAGACGAATCAAAGTCAGTCGAAGTGCCCCCTTTACTCCGCTAATTC
ATCTGATTTCACTACTGCTATTCCTTCGCTTCTTAGCAAGGCTTCTCGATTTAGGATTTCAGCTA
GTGGCTAGAATTTTAGTGATGTATCTATACAAGATATTACAACTCGGAAAAAGCTTACTTCTCCT
ATCGCTTCAGCAGTAGCTAGACTTGGTATATTCGATTATTCGGCATTGCTTGGTCTGATTCCTAG
GGGACATAGGTCACCATTACCTATTGAAGAGAAAGCCCATACGGCTTACTCAAGGAAAATAGATA
GAGTGGAGATAGAGACAGAAGTAAGAGCTCCCCCGGCTAACTCGG


Right flanking sequence: Indices 161384 -- 161883
GCGTAGGGGCTTTACCACTAGTTTGCCTAATCCCCTATTCCATCCCTTACTTTACCTACGGCATT
AAGCGGGAGTCTTGCTGAGCCTATTATTTCTTCCTCTTTTGCTGGTGGGTGTTCATTATCAGCAG
GCTCTTGTTCAGTGGGGGATATTCCTTTTTCAACCCCGGGTTAAGCAATGGATTCTAGTTCTAGA
ATTGTATCTCTCGGGGGTATTGTAGAACGGAAAGCCCCTCACCTATTCCCTATTAGCTCTCCGCT
CAAAGGCTAACGCTTCAGAGGGCATTAAGTCTTTTTCCTTAACTCCAGAAGTAAGAATACCCATT
TTTCTAGTCCTTTTGTTTAGTTAAAGACTGGTCTATCTTACCTTACATCTTCACTCCCTGGGCAA
GACCCCTCAGATCAATCTAGGGTAGAGAGTGAGTTACCCGCAGCTCAAATAGCCAATCAGAGCTT
AACGTCCATTCCTTTCGCTTAGCAGAACCTCTCGCTCGCTCTTTG



Found at i:162189 original size:16 final size:16

Alignment explanation


    Indices: 162168--162202  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

     162158 TTTACTCAAG

                            
     162168 CTTGAAAAAGGATTAA
          1 CTTGAAAAAGGATTAA

                            
     162184 CTTGAAAAAGGATTAA
          1 CTTGAAAAAGGATTAA

               
     162200 CTT
          1 CTT

     162203 CGGGGTCTGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.46, C:0.09, G:0.17, T:0.29


Consensus pattern (16 bp):   
CTTGAAAAAGGATTAA

Left flanking sequence: Indices 161668 -- 162167
TTAAGTCTTTTTCCTTAACTCCAGAAGTAAGAATACCCATTTTTCTAGTCCTTTTGTTTAGTTAA
AGACTGGTCTATCTTACCTTACATCTTCACTCCCTGGGCAAGACCCCTCAGATCAATCTAGGGTA
GAGAGTGAGTTACCCGCAGCTCAAATAGCCAATCAGAGCTTAACGTCCATTCCTTTCGCTTAGCA
GAACCTCTCGCTCGCTCTTTGCTAGACAAGTTAACGGGCATTTCTTCACGCATTGGAGAGTCCCA
CACACGGTTCATAGAACAGCTAACATAGCTGCTGATTGGGTTGCTGGTTAAAACAGTAGAGGGTA
AAACAATGGAATAAGCCGACGACCTATCAGACTAGAAGGACCTGGAGCTCATAGCTCAAAAGGAT
TAGCTGCAAGTGCCCCTTTGCGACCAATCGATCGTGAGACATACCCATTTCCGGATCCAGGATGA
ACACCCAGGGAAAGAGAAGAGAAAGAGCCTTCACTTTTACTCAAG


Right flanking sequence: Indices 162203 -- 162702
CGGGGTCTGTGTCGCATATTCATTATGCTCAAACTTGAAAACGGGCTCAGAGGATAGGTTTACTC
ATTCATTCCCAACTGCTAGACCAAAGGCATATCTTAGACCATCTCCAAGACCGAAGTCTAAGGCA
AAAGTTGATAGAGGAAATTAAGTAAGGCAATTACCCCCTCTATACCTTTAGCTCGAGAGAAAGGA
CTAGCTGCCTGCCCAAAGAGACCTCCGGTTCAACATGTCTAATTTCCCAATGACACCCTCTGAGA
TGCCAGGATTTTCTTGAAATGCGCCAGCAGAGAGATAGGGAATTAGTACTGCTGCTAGGCAATTG
CGAGAGAAAAAGTCTCAGGTTGGGTAAGGGGTTGAGTCGGACTCTTTTGAGGTTGAAGCAAAAGA
AGCAGCAGGATAACCAGGAACGGGGAGCTTTCCCACGTCATCTTCTTCTATAGCGAAAGAGTTAA
CCGCGAGCAGGAAAGAAAGCCCTTCTCCTTACGTCTCGAATAGAG



Found at i:164203 original size:21 final size:21

Alignment explanation


    Indices: 164177--164220  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

     164167 AAAGGCGGCC

                                 
     164177 CTTCTTCTCGTCAACCAAGAA
          1 CTTCTTCTCGTCAACCAAGAA

                                 
     164198 CTTCTTCTCGTCAACCAAGAA
          1 CTTCTTCTCGTCAACCAAGAA

              
     164219 CT
          1 CT

     164221 CGGTCAACAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.27, C:0.34, G:0.09, T:0.30


Consensus pattern (21 bp):   
CTTCTTCTCGTCAACCAAGAA

Left flanking sequence: Indices 163677 -- 164176
AAGACTTGCCCCCTTTCCCGGTCGATAGGATTCTGCTTCTTCAAAAGCGATAGGGGATTTAGGGA
ATGATGTAGTAGCGTAGGTACTGATGGTTATATTCCTGCTCAAGATTCTGGAATAGGTTTTCCTG
TCCTGTCTTGAGAGCTTCTTCTATTGTTCTCGAGCTAAGCTCAGTTACATAAGGGGCTGGCTTTC
TCGTCTGGGTATTTGCTTCGGGTTATTAAAGGAAAGGAAGATGGTGAGATGAATGAAGAGCTTTC
CTTATCGATATAGAGAGTTCCATAAAGCTTTCCCTTCTTCTTGACTAAATCGGCATTTCAGATCA
TTCAGCAGGCGAAAGAATAAACAGCATATTCTGGAGTTGGCCCAGGGATTTTCCTTTCTTTTGAC
GCATTCCTGTCGTATGAGTTGGGCCCTGATAGCCCTTACATCAAAGACGGCCCAAGAACAAGCAT
TGGCCCTCACTCACTCACATGCTCAAAGACTAAAGAAAGGCGGCC


Right flanking sequence: Indices 164221 -- 164720
CGGTCAACAAACAAGGGAAGGCGGACTCTCGGTCTAAGCATGCGAATAAGAACAAGCGCCTACTT
CCTTAACCAGAAAGAAGGAAGACAAGGCCTTAGCTCTCTCTCAAGACTACTGGCTAACAGATTTG
CTTACCTTACTTCTTTTACTCGCCCTTTTCCTTTCTTTTATGGGGAATCCTGATCTTATTTCTTT
AGTAGAGACTAAAGTTGACTCGGGGCAATACCAGAACCAATTTTCAGTTCCGATACGTGAAAAAG
GAAATCAAGAATGCGCACTCACACACTCGCTCCCCTATGTTCATATGATGATCACCTAAAACTCG
GTTCAGCTTCATTCGGGCTGGGCTCTTCCTCGTTTGCTCTTAGTTCGAAAAAAGCAATTCCTTAT
GCTTCGTGAAGGAATTAGCTTGTTGCTTTGCTCAGACTAGAAGTATTTCATTCCGATTCCGAAGA
ATAAATAGTATTCTCTTTCGAGTGCAGCTACAGTAGCTATTACTT



Found at i:166201 original size:23 final size:23

Alignment explanation


    Indices: 166175--166220  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     166165 TTTACATCTC

                                   
     166175 GCTCGGGATTTGCTTATTTATTT
          1 GCTCGGGATTTGCTTATTTATTT

                                   
     166198 GCTCGGGATTTGCTTATTTATTT
          1 GCTCGGGATTTGCTTATTTATTT

     166221 CTTTGATTGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.13, C:0.13, G:0.22, T:0.52


Consensus pattern (23 bp):   
GCTCGGGATTTGCTTATTTATTT

Left flanking sequence: Indices 165675 -- 166174
TTGCATTTCAATGATTCTAGGCCTCTCTCGGGATAGACCGCAATTAAAGTAGAATTAGCTAGGGT
TGGGAATCTCTTAAGAGTTTCGATTCATTTCTTCGGAGCTGGGGGAAAGGTATGGCTTCAAGCCT
GTTATTTAGTTTCGAGCTTTCTTACCTACCTACAATTTAAAAGTAAGCAAAAATCCCCGTCTTTA
CATCTCAGCGGAAAAAGAGACTTTCTTTGCCGAACAGCTCAGAGGACGAAATAGGGTCTTCAGTG
AAGAAAGGGGATAAATCACCTGCATGCAGATCCTACTTTTCCTATGGAATTTCGACCGTAATTCA
AGAATTAAAGATCGGGTTTGACTCTGTGCCCATATACGAATATCTTGGGAATCCTACTCAACTAC
TTCCCTACCCAAGAAAGAAAATAGGCTCTTCAAGACCTCATCTCATCATACAACATGAGGACTTT
CACCGCTATACGAGATAGAAGTTTTAATATTTCATTTTACATCTC


Right flanking sequence: Indices 166221 -- 166720
CTTTGATTGGGTATTTGATTTCCCCTAATCGGAATCTCGAAAGTGAGAAAAAAGCCATCAATCCG
CCTTCAACTCGGTAGATTCTCTTTCAAGTCGAAGAAAGAGTTAGTTCTCAACCAGATAGTTAAAC
CGATTCCAAAGTAAGACTTGAAAAGCTGAGTTCAGAGACAGAAGTGGTCAAGGGTGACTCTACCG
CTATAGAAGAGCAAGGATTTCTTATAGAGAAGAGCAAGGATTTCTTACGTGTTCAACAACCGCTT
TTTGGGCTTTTTCTTCAGGTATTGATTTCACAGCCCTTGAGTTTAGGGTTGACGTTTCCTATGGT
GCTTACCGAAGAGCTCTCCTTTCTAACTGAATTATTGACTCTGTTGTCATGGTTGGTGTTGAGGC
AGCCACCTGCTTTTCCAAATGCTTGCTTCAACGAGCTTCCTTACCCCCCTTTTTCTCGAACCCGT
CGAAAGAAAGAAAAGAGATGTTTACTCGTCCTAGTAATAGCGGTA



Found at i:166443 original size:21 final size:22

Alignment explanation


    Indices: 166420--166462  Score: 77
    Period size: 23  Copynumber: 1.9  Consensus size: 22

     166410 CTACCGCTAT

                                  
     166420 AGAAGAGCAAGGATTTCTTATA
          1 AGAAGAGCAAGGATTTCTTATA

                                 
     166442 GAGAAGAGCAAGGATTTCTTA
          1 -AGAAGAGCAAGGATTTCTTA

     166463 CGTGTTCAAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26


Consensus pattern (22 bp):   
AGAAGAGCAAGGATTTCTTATA

Left flanking sequence: Indices 165920 -- 166419
ATAGGGTCTTCAGTGAAGAAAGGGGATAAATCACCTGCATGCAGATCCTACTTTTCCTATGGAAT
TTCGACCGTAATTCAAGAATTAAAGATCGGGTTTGACTCTGTGCCCATATACGAATATCTTGGGA
ATCCTACTCAACTACTTCCCTACCCAAGAAAGAAAATAGGCTCTTCAAGACCTCATCTCATCATA
CAACATGAGGACTTTCACCGCTATACGAGATAGAAGTTTTAATATTTCATTTTACATCTCGCTCG
GGATTTGCTTATTTATTTGCTCGGGATTTGCTTATTTATTTCTTTGATTGGGTATTTGATTTCCC
CTAATCGGAATCTCGAAAGTGAGAAAAAAGCCATCAATCCGCCTTCAACTCGGTAGATTCTCTTT
CAAGTCGAAGAAAGAGTTAGTTCTCAACCAGATAGTTAAACCGATTCCAAAGTAAGACTTGAAAA
GCTGAGTTCAGAGACAGAAGTGGTCAAGGGTGACTCTACCGCTAT


Right flanking sequence: Indices 166463 -- 166962
CGTGTTCAACAACCGCTTTTTGGGCTTTTTCTTCAGGTATTGATTTCACAGCCCTTGAGTTTAGG
GTTGACGTTTCCTATGGTGCTTACCGAAGAGCTCTCCTTTCTAACTGAATTATTGACTCTGTTGT
CATGGTTGGTGTTGAGGCAGCCACCTGCTTTTCCAAATGCTTGCTTCAACGAGCTTCCTTACCCC
CCTTTTTCTCGAACCCGTCGAAAGAAAGAAAAGAGATGTTTACTCGTCCTAGTAATAGCGGTACG
TCCGACTCTGAGACTTGGAATCGGCTCACCTCTAAAGACCCTTCGCCTTTCGGCTCACCTTCTTT
GCCTCCTCCGCATATATCTCAAGCCCTTGCTTTGAACCAACCACCTGACTTCGATCTTGTCTTGA
AAAGACCAGTCAAATAATAGACGATGAAAGGAAAGGATACCTTACTTAACGATTCCCACCCGAAT
TGGTCTATTACTCTTTCAACTGTTCAAGTGTGCTGGCGTCCGTAA



Found at i:169514 original size:22 final size:22

Alignment explanation


    Indices: 169486--169532  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

     169476 TCCTCATCCA

                                  
     169486 TAAGAAAAGGAAAAGACAGAGT
          1 TAAGAAAAGGAAAAGACAGAGT

                                  
     169508 TAAGAAAAGGAAAAGACAGAGT
          1 TAAGAAAAGGAAAAGACAGAGT

               
     169530 TAA
          1 TAA

     169533 CTTCCCCGGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.60, C:0.04, G:0.26, T:0.11


Consensus pattern (22 bp):   
TAAGAAAAGGAAAAGACAGAGT

Left flanking sequence: Indices 168986 -- 169485
AGGGCAAACAAAGCTACTATATCCAAGAAAGACAAATCCCAAAAAAGCCTCGATACGCAATTCGT
AATTCCTCTTTGTTGAGCAAGTAGTCGGAAGCTCTTAATTCGTGATGACCCTTCTCGTACGGAAA
GGGACTCGCGTTCAAAAAAGACGGGGTTTTCATCATAACCCTACCCTAATAAAGGGATTGAGTCT
TTCTTGCTTACAGTTCGGGCATGAAATGAAGATGGGCAGATCAGGTGAGAGAATCGATTGATTTA
ACTTCGGCATATCACTTAAGAAAGGTTGCAGACAAGTGGGATAGGAAAGGTTCTATATCTTGATA
TCACTCTAAAGGTTGCATGATAAAAGGTCATAGAATCGAGAGTTCGCCTTCAACAGCTAAAAAGC
GAGTTGATATAATCGATTGATACCCCCCAAAAGCCTTACTAAGACCTTCTTGCTCTTACGGGTCT
TAAGCGGGTGAAGGTGGGGAATCCCTTTTGAATTATCCTCATCCA


Right flanking sequence: Indices 169533 -- 170032
CTTCCCCGGTTTCTAAAGGGGAGAGCTTGGGAATCTTGATCAATAAAGTGCCCAGGTACCTTTGC
TTTGACAAGACCTCCTTTTCGTTCTACTTAGGTGGATCAATCCGAACTGTCGACAGAATATAAAA
GAGGTTTTTATTCCTGTGTAGACACCTCAACGAACTCATGTGGGCACTCCTCAGCCCGTGGACAA
TCTCCCAAATAAACATTAAGATGTTGACTCGTTTTTCTTTTCTTTGCTGATTCCTATCAATGAAA
TTTGCCATGTTGCACTAAGTTACTTACGGATGTATGCATGCAGTCCGGGAACACTTTGGGGTGAA
CACCCATCCAAACAAGTAGGGTCAATAGTTCAGCATTTAGGCCGTAACATTTAGAAAGAAAAAAA
ATACCCAACAAGTGCTCTCCGAACCAAGCTAGATAGTCTCCTATCACTAGGCTCAAAAACCAACC
TGGACTTTGATCTTATTATTCCTACCGGATATCAAAACCATAAGG



Found at i:172096 original size:13 final size:13

Alignment explanation


    Indices: 172078--172105  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

     172068 CATGATCACA

                         
     172078 TTGGTTTACCCTT
          1 TTGGTTTACCCTT

                         
     172091 TTGGTTTACCCTT
          1 TTGGTTTACCCTT

              
     172104 TT
          1 TT

     172106 TTCTTTGGTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.07, C:0.21, G:0.14, T:0.57


Consensus pattern (13 bp):   
TTGGTTTACCCTT

Left flanking sequence: Indices 171578 -- 172077
GATGGTTTTCTTATTTTGTACTACGAAGGCCCCGGTCGTGCTTCTGGTTTCCATTCCCATAATCA
TATTGATGATAAATCTCCTCGTGCTCTGCCATAAGAACTTGGAGTCCGTATCATGGTGAAGGTAA
GGTAAGGCTGTGATTCTTGCTCAAAAAACAGACCGAACGCGTTCGAGTTATTGGCTCGTCCAACC
CGGCAGCATTCATGAGTCGCTCGTTCAACTGTCCCTCGGAGACACGGTCGAGAAGTACCATGCAT
GGTTGCCCTCCGTCCTTTCTTTCTCTCAGTCCCGCCCAGAAAGATAGGGCTCAGCCAAAAAAAAG
TGAACGCCCCTGCGCGAGCCTTATTTTATTAGTAAGGTAAAGCTTTTTCTCCCTAAAGACTAAAA
AAAGAAATCAAAATATAAGGGGGGGACTTATGCAACGGGCTATGCCACCCAAACCAACTAAGGGA
AGTCGCATCCGTCCCATCGCAAGCACCTACAACGTCATGATCACA


Right flanking sequence: Indices 172106 -- 172605
TTCTTTGGTAGTTCAAAGGACGGTCGCCCCTCCAATAAGAAAAGGTATAAATATAGAGACTTCTC
TGCCATTTGAATCGGAGAATTTATGGAGGAAATCGGGTTTTAAATTTCCAGAAACCACACGATTA
TATAGCCAAAGGGAATACGCAGCGCCTAAAATCATCCCAAGCGCGGCTAATGTGGCTACTAAGCT
ATTTCTTTGGAAAGCTCCTACTAAGATGAGAAATTCCCCTATAAAGCTGCTAGTACCAGGTGAAC
TCATATTGGCCAAAGTAAAAGAAAAGAAAATGGTAGAGAGATTCGGCATGGTGCTCACTAAACCT
CCGTAATATCTAACAAGTCGAGTCTTATGTCGGTCATATAGAACACCAACACATAGAAAAAGGGC
TGAAGAAACCAGTCCATGACTTAACATCGGTGGAATGCTACCTCCAATTCCCTGTATGTTCGATA
GAGCCAAAGATCCCCAAACCACTGATCGGAGTACGCCGATTACCC



Found at i:179051 original size:26 final size:26

Alignment explanation


    Indices: 179022--179074  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

     179012 GCTAAGTGAA

                                      
     179022 ATAAAATAATATACTGGTGCTACTAT
          1 ATAAAATAATATACTGGTGCTACTAT

                                      
     179048 ATAAAATAATATACTGGTGCTACTAT
          1 ATAAAATAATATACTGGTGCTACTAT

             
     179074 A
          1 A

     179075 GAATCTTTTG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34


Consensus pattern (26 bp):   
ATAAAATAATATACTGGTGCTACTAT

Left flanking sequence: Indices 178522 -- 179021
CTTTCAAAAGACGAGTAAGAGACGGGGAGGGGGAGGCTCTCGAAACCAAGCGAGACTAAAAAGAA
CATGAGAATTAGCACCATTTCTATGAGTGCTTTTTTTCGAAAAGCCAACAAAGGGACAGCCCTCT
TTCTCTATCTCGGTCTCGGTTTAGCATCATCATATATCGATCCGGAGATAATTTGGATTGGTTTA
CGTGCGGATTAAGGTCTTGCAGAGCCTCCATGCTGTGGCTGTGGAGGTGGGGGCTGACGCCGCCT
GATAGAGGCAGAAGCGGGGCCACCGGAACTATCTGCGTCGAGTGTGTCGATTGAAAGAGAAGGGG
AGACAAAATCCATTCCAGCGAAAAAATGGAAAGAGTCGTGCCGTTCAAAGTGGAATTCTTCTAAG
ATCCATCCATTGCTCGATCGATTTTCCATGCTCTGCTCCCAAAATGCAGAGAGACTCGCGGGGTA
GGGTTGCTTGGTCCGGAAAGTCATGGGGGAGGCAGGCTAAGTGAA


Right flanking sequence: Indices 179075 -- 179574
GAATCTTTTGAATCACGCACGGCACACTTTCTATATCTCCTACGTATACAAGGTGAACAGCTTGG
CTTACAGCACAGCGTGTTCGCCACCACACCGGCTGGCTGGTGCATTGGCCTTACCGTAATAGGGC
CGAGAGGTATAACCCTTCGATTAGAACGCCCCATATCTCGTGACACGCTCCGCGTGACATTTCCT
TTTTTAAAGTCCGTATAACTTATAACAAAAAGATTCATTCTTTATTGAATCAAGTACCATTCAAA
AAGTGCATTTACCCTTATTATGAATAAGAGAAGGGCTTTGTATAGACACCCTTGAGCCATATTCG
TCGCCCTAGGCTCACCATTATTTCATTTCATTCTATTTATGGGTTCTAGCTCTAAAGAACATATA
CATGGAGCTATGTCGACTTACGTACGTCTCATTGACCAAACGATTAGGTATACCACGCCACGTAT
CATCCCCTATTTCCATATATAAAAATAAAAAGAAAAGATATAGTG



Found at i:180583 original size:18 final size:18

Alignment explanation


    Indices: 180560--180598  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

     180550 TATGATTTTA

                              
     180560 TTTAGGTTCACTTACTCT
          1 TTTAGGTTCACTTACTCT

                              
     180578 TTTAGGTTCACTTACTCT
          1 TTTAGGTTCACTTACTCT

               
     180596 TTT
          1 TTT

     180599 TTCTTTATCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.15, C:0.21, G:0.10, T:0.54


Consensus pattern (18 bp):   
TTTAGGTTCACTTACTCT

Left flanking sequence: Indices 180060 -- 180559
GTTATAGCAGCACTGAGCAACATTCAACAGCTCCAGTCCTTCTGGTTTGCACAAAAGTGTCTTAA
GTAGCCCTCGAGGAGTCCGTTTATTTTCTCCGTCTGAGCTTTCAAAGATATACCGACCATAGGTA
TCTTACCATCAGATACCGACAGTCGTCTTCTAACATTACCGACCTTTAAATATCGGGTTTTCATC
AATTTCACATAACATAAAAAAAAGCTCTTTTCATCATTAAAAACAACCTTCTTTACGACCTCTTG
TATTGCATTACCATAACAAAAAGAATCAAAATGAAAAAAAAAGAGAAATTGCTCTTGTGACTCGG
AATGAACCTTTCTCGGTGGGGTAAAGGCTCTTCAAGACCTATAGAGCATCCAAGAACAAGAAGAT
TCAATCGGACGACGAATTCTTACGTGGTCCAAGGAAATCAAAGGTCCGCTTCCACGATTTCATCT
ATATCGAATCTTAATATCAGAATAGCTTATATAGTTATGATTTTA


Right flanking sequence: Indices 180599 -- 181098
TTCTTTATCATTTTTCGAATCTGATTGGAACAATGGAGAAGTAGGAAGACTTTATCGATTCCATA
ATGGGTATCTAGAATATCTATGTCCCAAAACAACAAATCTTAATAATAAAAACATGAAGATGAGG
CAACGACCATAAGTGTGACATAGCAATTCCCCTAATCGACTACTTATCATCATAATGAACATTCT
ACTTAAAAACTAAAAATAAAACTACTCACCAGGCGGTTACCTTTTTTTCATATCTATATTCTCTG
CTGAAAAAGAAAAATGAAGACTAAGATAGGAGTTTCGTAGAAAATAGAAAAGCCCCTTTTTTTAT
CGGATTTGAACCGACGACTTACTCCTATTTCTTAGGGCGTTTAAAGAGCGCGACTCTACCGCTTA
GTTAAAGGGCCCATTTGATTCAATTCATGAATTAGCCCACTATGAGTTTACTGCATTTATATTTA
GAAAGATATATTTTATAATAATAATATAGTATATCATTCGTGTCT



Found at i:181167 original size:20 final size:20

Alignment explanation


    Indices: 181142--181182  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     181132 TGAAATCCAA

                                
     181142 TAAGAAAAAATAATAAGAAT
          1 TAAGAAAAAATAATAAGAAT

                                
     181162 TAAGAAAAAATAATAAGAAT
          1 TAAGAAAAAATAATAAGAAT

             
     181182 T
          1 T

     181183 TTGGGTCTGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.68, C:0.00, G:0.10, T:0.22


Consensus pattern (20 bp):   
TAAGAAAAAATAATAAGAAT

Left flanking sequence: Indices 180642 -- 181141
GGAAGACTTTATCGATTCCATAATGGGTATCTAGAATATCTATGTCCCAAAACAACAAATCTTAA
TAATAAAAACATGAAGATGAGGCAACGACCATAAGTGTGACATAGCAATTCCCCTAATCGACTAC
TTATCATCATAATGAACATTCTACTTAAAAACTAAAAATAAAACTACTCACCAGGCGGTTACCTT
TTTTTCATATCTATATTCTCTGCTGAAAAAGAAAAATGAAGACTAAGATAGGAGTTTCGTAGAAA
ATAGAAAAGCCCCTTTTTTTATCGGATTTGAACCGACGACTTACTCCTATTTCTTAGGGCGTTTA
AAGAGCGCGACTCTACCGCTTAGTTAAAGGGCCCATTTGATTCAATTCATGAATTAGCCCACTAT
GAGTTTACTGCATTTATATTTAGAAAGATATATTTTATAATAATAATATAGTATATCATTCGTGT
CTCTCTTACAACACGGCGAAACTAAATGGTTCGAATGAAATCCAA


Right flanking sequence: Indices 181183 -- 181682
TTGGGTCTGTACACCTAATTTTCCTGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAG
GCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGACCTAGTATCCGATGAATCGATCAATTCATC
TCCTCATTTTCTGTAAAAAGAAAAGAAGAGACAACAGAGTAGGATCTAATTTCCAGCAGGTTTTT
TAAAACCTTTCCTTTCGCATTTCTCTTCGGACAAAGAAAGTAAAGGAATCCAAATGACAATAACA
AGTACCGATTGATGGAGGGGAAAGAGATGTAGGTTTGTACAATCGGGGGAATCACCATATTCAGG
ATTCAAAGAGATACCGTACTGGTCTGGCTTTTTTCGATTGTTCCTGATCCATCGAATAGAGTAGC
ACAATCTTTCTACCAGGAGCATAATAAAATCTTTTTTATGATACGTAATTAACTTAACATAGTTA
CCCGTACCCGGCAGGGTACTTGATTCAACCTACCCTTTATTCTAG



Found at i:187170 original size:29 final size:29

Alignment explanation


    Indices: 187137--187194  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     187127 TGTTCAGTCG

                                 *       
     187137 AGATCTGATAAAAGCATTACTGTTCTCCT
          1 AGATCTGATAAAAGCATTACTATTCTCCT

                                         
     187166 AGATCTGATAAAAGCATTACTATTCTCCT
          1 AGATCTGATAAAAGCATTACTATTCTCCT

     187195 TTTGGTTCCG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34


Consensus pattern (29 bp):   
AGATCTGATAAAAGCATTACTATTCTCCT

Left flanking sequence: Indices 186637 -- 187136
CTCATGCAAACACAGATTTAGTGGAAAAGATGGAAAAGATAGAGTGATATCCTCTGTCACATAAG
AGAAAAGAGAGAGTTGTACCAAGTCCTCAAGTTCAGTTCTCCGATCCGTTGAAGAATGAGGGTAG
AAAGCAGGCTTCGGCTTACCCGACTGAAAGCAGACTAATATATTCAATTGCTTGACTGACTTCGG
ATTGAGCGAATACATAAGAGTCAGTTCAGGTTACTGTGTTCTCGAGCAATAGCGAGAGGATTGAT
AAAAGAAAGGCTTTCTTTAGAAGCTCTCCTAGCGGAGTAGTTGTCTTGCTTATGATATGACGACG
GACCTACTAGAAAGAGAAAGCCTCTGGTCGAGGTTTTGAAAGCAGCGGAGCCCGCAGTTGATGTA
TTTTCGGTCGAGCAAGCAAGCCTTACTTATTATTAGTATATAGAGGGCCTCTTGCTAGTCGAAGA
AAACCCCTGGCTTTCGCGCAGCTCAGTTCGGTGCTTGTTCAGTCG


Right flanking sequence: Indices 187195 -- 187694
TTTGGTTCCGGAAAGAAGAAGGAAGCCTGAAAGGCTAATATCTATTGGTCACTTGAGCTAGCGTA
AAAGAAAGTCCTTCAGTTGAAGTTCGGAAATAGCTTGTCTGAGAAGGCGCCGGGGTTGGATCTCT
CTCCGAACAAGGGGCTCCCGTGTCTACTAAGGCACTCACCTTCTTGTCCGCCTCTTTCTTTTCAC
TCGCTTCGAAAGTTTTTTTATTCCGTGCGCCTTGGGAGGGGTGTACTTTGTCCGTCAATCGAATT
AGCAGGTTGGATCCCCGCTGAACCAATAAATAGGCGAACAAGCTAAATGCCCGCCGTTGAGTAAG
AAGCGAAGGGGTCTGGTCCTTTTGCATTTCCTTCTTGATCAATGGCTGATTATCTTACTCCAGTA
AAATTCCTTTTTGAGGGTATTGGAATAGCATAAGAAAGGTAATAGCTTCAGAGGGCAGGTCATTA
AGGCTAGATTCAACGCGCTGTAGAGGGAAAGCAGCTTAGCCAATT



Found at i:189865 original size:20 final size:20

Alignment explanation


    Indices: 189840--189882  Score: 86
    Period size: 20  Copynumber: 2.1  Consensus size: 20

     189830 TTCCCAAGTC

                                
     189840 ATCAGATGAAGATAAGAATA
          1 ATCAGATGAAGATAAGAATA

                                
     189860 ATCAGATGAAGATAAGAATA
          1 ATCAGATGAAGATAAGAATA

               
     189880 ATC
          1 ATC

     189883 CCCAATACGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   23  1.00

ACGTcount: A:0.53, C:0.07, G:0.19, T:0.21


Consensus pattern (20 bp):   
ATCAGATGAAGATAAGAATA

Left flanking sequence: Indices 189340 -- 189839
GAATAGCAAGTAGCAGAAAGAGGGTCATTGCCCGGTTCAATAACATCGATGTCTAACCCGAGTCC
TATTTCAATTTGGAATACTCCATGAGCATGCAGGTGATTTCGGTAAGAAGTTGAATCAATTCCCT
AAGAAGCGGGATTTATACGTGAAAACTCAGTTTAGCCAAGCCTTGAAAGCAGTTCGAATACCACA
TCCATAAGACCTCGAGTGATGGAAGACAAAAGCTGAATTCAATACCCCATGCTCGAACCAAGAGT
TAGACTATCCCGATTCTACCAACTTGCTGAAACCTGGGGTGAAGTTAAGTGCTGTTGTTGCTCTA
CGCTCATTAGCTCGTAGCTGATTTGCTGGCTTGAGGAAAGCAAGTAAGATCGATATTAATAGAAG
AAATGAATCGAAAGACTCTTAAGATCTACCCAGATTCACTGAACTGAAATTCATTTCTTTATATA
CGATATTTATTGAGCGCTGAATCGAAACTCATCCATTCCCAAGTC


Right flanking sequence: Indices 189883 -- 190382
CCCAATACGAACCAGAAGCAAGGAAGAAATACCCTGCTTTCACTTTAACAGCACGCACCTTCGAA
TCATACACTACAGGGACACCTTCATCGCGACTTACAGACGCTAATGCCCTGCCCCCGGAAACTCA
TTCAAGAGTAGGCTCTGTAAGACCTCTCTTCTTAAAAGCCCCTCTGACATATACGCATACAAAAA
GAAAACCTAAAATAGGAAAAACGAAAAACTCACTTAAGCGAAGCCCTCTTTTGAGCGAGCAACTG
ATAATCTAGACAGCAAGAAAGAAAAAAGACAGAAATCCACATTCACTCGGACATAGACATAGGTT
CCTTAGAAGTGACCCTATTAAGATAGATAAGAGAAGAAGGAATAGAACGGAAAGAAAGACTTCAC
TTTTTGGACAGGAAGAACCTTATGAAATACAATCCCAAGGGGGGAATGGAGAAAGAACTACTTAG
CCTTAAGAGCTGGTGATATCTGGAGATTCTTCTGGCTAAACAAAA



Found at i:197512 original size:15 final size:15

Alignment explanation


    Indices: 197494--197522  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

     197484 GGCTGCTCTG

                           
     197494 AAAGACCTAGCAGCA
          1 AAAGACCTAGCAGCA

                          
     197509 AAAGACCTAGCAGC
          1 AAAGACCTAGCAGC

     197523 TGTAGTAGGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.45, C:0.28, G:0.21, T:0.07


Consensus pattern (15 bp):   
AAAGACCTAGCAGCA

Left flanking sequence: Indices 196994 -- 197493
GCCTTGGCAATAAATACCGCAAAGGAAGATGCCAACGAAGGCGCGGAAGTAGCCCAACAAGTAAA
CCCGAGAAGAGAGTTCAACCGATTGACCAAAGACAGACGGGTTCACCCGATTCGGCGGCTTATCC
GGATTGCTGATGTTAAATCCTTGTCGATCCCGAACCCGTTAGTGTATTTGGGGTGAAGCTGTCGA
TGCAAACTGCATTTCCTAGGCGAAAACCCTTGCTCTCAAGTCTAAGATCACTCACTATGACACTG
CTACTTAAGTTAAGGTCGAGCCTTAGTCAGTCTTATAGGTCGTCGGCCTATTCCATTGTTTTACC
TTCACTTGCTGTGCGATGTAGAAAGGCTCACTGTCTAACGAGCTTTTTTTATCAAAAGCGGGATA
ACTTGGAGTTAGAGTTGCATAACCGAGGTCTATTCAAAAACCCAGGTTTCAGACAAGCAAGCTCA
GGAAAGAGATTGGCGGACCCGAGAGCAGATTAAGAGGCTGCTCTG


Right flanking sequence: Indices 197523 -- 198022
TGTAGTAGGAGCTTAAGCTTTTTCATTTTCCTGGGATTTCTCATAGCTTTACCCTTTCCTTTATC
CGAAACCTATACGATTGGAACTTAAAGAAATAAAGGGTATCGCAGCTAGACGAGTGATTGGTCGA
ACAGTTGAGCTAAATCCCACTCCACGCCAGCAATAGAGCCTATTTTATAAACCTGAGACCTTGTT
GGATCTCTCAAGTTTGCAGACTAATTAGTAGGTTGAGAAAAGTTCATTGAATCGATAGCTCCTAA
ACCCCCTTCGGCTATAGGTGATGCGTAGATCCAACCTGCTAATCCTACGTTTGGGGTTTATGGTA
GTGTATTCAGCTTTCCCCTTACTATTTGAAGATAATCCGCCTTTTACTTGGGTTAATAAGAGCTG
GCTTCCCTTGCTTTATTTATGGTTCAACCTTATTCGCAGCCTATCTCTTAACAGACCCTGTGGTA
TTATGAAGGTTCTCGAGGCGGGGCTTTGCCCATGTGAAATTCAAT



Found at i:205285 original size:15 final size:15

Alignment explanation


    Indices: 205265--205309  Score: 90
    Period size: 15  Copynumber: 3.0  Consensus size: 15

     205255 AGAAAGCATA

                           
     205265 CGAAAATGGTTATAG
          1 CGAAAATGGTTATAG

                           
     205280 CGAAAATGGTTATAG
          1 CGAAAATGGTTATAG

                           
     205295 CGAAAATGGTTATAG
          1 CGAAAATGGTTATAG

     205310 ATCAGAAGAC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   30  1.00

ACGTcount: A:0.40, C:0.07, G:0.27, T:0.27


Consensus pattern (15 bp):   
CGAAAATGGTTATAG

Left flanking sequence: Indices 204765 -- 205264
ATGTAAGTAAATTGAAAGAAGCGCGTAAAAGGGTCAAATGCGGTTGCTAGCATCGAAAGGAGAGC
CGTCATCGACGATAAACTGGGCTTGAATGCAGCCCGGCTTGTAGAACGAAATTCCCTGTCTACGA
TTCAGCCTATTCTTACAAGGGTTTCATAATTAGACATTGAACCCATTTCATATGATGCATTGTCT
TCATCCTATCCCCTAGTCATTTCCGGTCCAAGCGAAGTCTTGAGTTGAGTGGGCGGTCAGTCCCA
TTGTTCATTGATCTACCCAATGCAAGGTGAGTTTGTCGGGCATGACGTGCCTATCCCTTTTCATC
AATAATAGATAGCAGCTAATCCAGTTGATCCCGTATAGGCGAGCTACTCCAATCAAAGAATCAAG
ACAGGAGGCGGGAAAGTAGCTCACACAACCAAGGTTTGTTTCACCTCAGGACAGTTCTTAGAGAA
ACTAAGGGAAGAAGGAATTACTTAGACGAAGACGAAGAAAGCATA


Right flanking sequence: Indices 205310 -- 205809
ATCAGAAGACACATTCACTACATAGAACACTCACTGAGAAGACTCAAATTCTAGCAGAATGAAAA
GATGGGAACTGCGGGTAAAACCCGAAGGGGGAACCGCCGTGGACGGCGGCTTTTGTCGTTCGCTT
TCTGTCGTTTGTCGTTGTCGGTTTATTTTCTGTCTTTCTCGTTCGTTCCTCGATCCGACCTTTTT
ATTAGGTATAAGAATAAGGACAGTGAGCCATCTACTGCAATCTATGAACCTGTACCCGATGAAAG
TAAGGATGAAAGAGAACCCGCTCTGAGAGATTGGCATTGGCCTCTGGGTCCGCTGCGGTAGAAGG
CCTTAGCTGGCGTCCGATCAGGGGGAAAGCTATCGTCCGAGGTTCCCAGAATATGGATAAGGGGG
AATGGTAAGACCTTACCGAGTGTGCATTATATCAAGTTGATGGGCCAGACAGCAATGCTAGGTTC
GAGGAAGAGACCAGTAGGTTTGGAAAGCCTGTCGATCCATTCTAA



Found at i:214124 original size:95 final size:94

Alignment explanation


    Indices: 213961--214149  Score: 369
    Period size: 95  Copynumber: 2.0  Consensus size: 94

     213951 ACTTGCTCTC

                                                                             
     213961 ATTCTTTACGACGAGTCAGTCCACTATACACAACCGGGATAAGCCGACGAAGGAATTCTATCTGC
          1 ATTCTTTACGACGAGTCAGTCCACTATACACAACCGGGATAAGCCGACGAAGGAATTCTATCTGC

                                         
     214026 CAGTACCGGAGCCAAAGCAGCTAGCTCGT
         66 CAGTACCGGAGCCAAAGCAGCTAGCTCGT

                                                                             
     214055 NATTCTTTACGACGAGTCAGTCCACTATACACAACCGGGATAAGCCGACGAAGGAATTCTATCTG
          1 -ATTCTTTACGACGAGTCAGTCCACTATACACAACCGGGATAAGCCGACGAAGGAATTCTATCTG

                                          
     214120 CCAGTACCGGAGCCAAAGCAGCTAGCTCGT
         65 CCAGTACCGGAGCCAAAGCAGCTAGCTCGT

     214150 CCCGAATCTC


Statistics
Matches: 94,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  95   94  1.00

ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20


Consensus pattern (94 bp):   
ATTCTTTACGACGAGTCAGTCCACTATACACAACCGGGATAAGCCGACGAAGGAATTCTATCTGC
CAGTACCGGAGCCAAAGCAGCTAGCTCGT

Left flanking sequence: Indices 213461 -- 213960
CCATCATATGCGACTGGGTTCAGAGATGCTGACACAACGTCCGAAGTCATTGGTTTAGCAACGAT
AGACTAGACAGCTGCGGGAACTCTAGCTCTTTCTTTTACTGGTTTAGCTGCATACCGAGACACCT
TTTCCTTTGCTCTGGTTGGGTAAGGCTCGTTAAGACGATAAAAGAAATCCCTAGTTCTTCCTACG
CGGATAGAGATTCCAAAGCTGCTTCATCATAGGGCTTCACCGACCAGTCATTTCATCGTGGTACC
TAATTTTTGGACTAATCCCGAATCTCGCACTCTTTGATTTCTTCCCTTCGCTTTATCTTGGATGA
AGGCTTTGAGGAGCTATGCGAATAATCATCTCTATCTCTCGTATCCGATTCCACTTAAAGGGATT
CATCTTCCGGGTATGGGAAAGTCGCTTTACTTTACTTGCTCCAGAGCGGGTTAACTTAGAGCCTT
TCTTCCACGAGAGCCTTAAAGCGGTGACTTCAGCGACTTGCTCTC


Right flanking sequence: Indices 214150 -- 214649
CCCGAATCTCTGAATATTAATTTCCCGTTCCTGTTGTTATTTCTTTTCTTGGGGATTTGATTGAA
CCAGCTCTCATCTTTATTGATGCTCGGAGAGATCATGTAAAATGGAATGATGGAAGGGCCTCTTG
ATTTACCTCGCGTTTTACCGTCTTTTCTCATAGCGAGTCAATTTCCTTTAATAAATTGAATTCGA
AATCGAAAACTTTCATTTTACACGTATTTCTTGAAAAAGTAAATTAACCTGTCCGAATATAACAA
GAGGTTCCATTGAAATGCCTCCTGAAGAAGGCGGCGTCGAGAAGGTAGGCGAGGATATCCCTTAC
CCTTAATTAATATGACTGAAGTGAAAAGACACCTCTACACTCATCAGTAACCTGGGATGAAACGA
AACCACAAGGTTAACCGAATCAACCACATCTAAGGGCGGAAGTTGACTTCTCAAGGCTACCTTTT
CACTTTGCTCCTCTAAGGTCTTGTCAGAGCCTCTTTCATCAGTTT



Found at i:214799 original size:28 final size:28

Alignment explanation


    Indices: 214766--214820  Score: 110
    Period size: 28  Copynumber: 2.0  Consensus size: 28

     214756 CAAGCATTTA

                                        
     214766 ATAATTAAGAGTGCCTTAGCCTTTAATT
          1 ATAATTAAGAGTGCCTTAGCCTTTAATT

                                       
     214794 ATAATTAAGAGTGCCTTAGCCTTTAAT
          1 ATAATTAAGAGTGCCTTAGCCTTTAAT

     214821 ATAGAGGGGG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38


Consensus pattern (28 bp):   
ATAATTAAGAGTGCCTTAGCCTTTAATT

Left flanking sequence: Indices 214266 -- 214765
GGAAGGGCCTCTTGATTTACCTCGCGTTTTACCGTCTTTTCTCATAGCGAGTCAATTTCCTTTAA
TAAATTGAATTCGAAATCGAAAACTTTCATTTTACACGTATTTCTTGAAAAAGTAAATTAACCTG
TCCGAATATAACAAGAGGTTCCATTGAAATGCCTCCTGAAGAAGGCGGCGTCGAGAAGGTAGGCG
AGGATATCCCTTACCCTTAATTAATATGACTGAAGTGAAAAGACACCTCTACACTCATCAGTAAC
CTGGGATGAAACGAAACCACAAGGTTAACCGAATCAACCACATCTAAGGGCGGAAGTTGACTTCT
CAAGGCTACCTTTTCACTTTGCTCCTCTAAGGTCTTGTCAGAGCCTCTTTCATCAGTTTCCAAAG
GTGGTACTTAAGTCAAATGGATTTAGGAGCGATTCCACGTGCTAGCCGAAAGTCTGATTCGGATT
CTTCTTGAGCTACCTTAGTTAAGGAAAGATAGGGCCAAGCATTTA


Right flanking sequence: Indices 214821 -- 215320
ATAGAGGGGGTCTTTTCGTGCTCTAGGCGCTTTATTGCAGAACATTTAGGCGAGCGTTCACTTCC
CTTGTTTTGAAGTCAAGTCAGTAGGAAGCTGTTCGAGAACAGCATCTCCTGGAATCGACGTATGG
GCGGGCGGAGAAGTTGGATCATTAGGAGCGGGATTCGTGAGCAGAAATATCGTTCGATAAAGGAT
TGATATTGACAGAGAACATAGAGTTGCATCCGGAATGCCGTATAGGAATGGAGCGAGTGGAACCA
GACTTTGGACAGTGTACGGTACAAAGACTAAACTCTCTTTGTCTTATCTTGATTTTACTGTAGGT
AGTGGTAGTTAATCAGAGTCATCCCTATTATTCTCCAGCATTCCTAAATCGGAAAACCGGAACTC
CTTCTCCTTCTCCTTCTACGGAGAGAGCCTATCCAATATCCAACGGCATCCGTACAGTACAGCGA
TCAAGGTAATAAAGGTACAAAGATTTTTCCGGGGTTTCTTTTTGA



Found at i:216899 original size:29 final size:29

Alignment explanation


    Indices: 216861--216918  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     216851 CAACTACCAA

                                         
     216861 TTAACATAATAAAAATCCAGAATTTCAAT
          1 TTAACATAATAAAAATCCAGAATTTCAAT

                                         
     216890 TTAACATAATAAAAATCCAGAATTTCAAT
          1 TTAACATAATAAAAATCCAGAATTTCAAT

     216919 AACAGGCTCT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.52, C:0.14, G:0.03, T:0.31


Consensus pattern (29 bp):   
TTAACATAATAAAAATCCAGAATTTCAAT

Left flanking sequence: Indices 216361 -- 216860
TCTCTGCATCCATGCCTGAGTCAAGTGGGCTTTCATACCTGGAGGTTGCCTTATGCCGGTGCCCC
GTTTCTGGGTTGGTTGCCTTATGCCGGTGTCCCCTCGATGTCCGGCCAACAATTCTGGTTCCGCG
TTCGCCTAAACGACAAATGCGGCTGAGTTTGTTAAGTCGGGTTCGAGATCTTAAAAAGCACCCAA
ATTTCAGCGCGTGCCTTAACACTTTCCATCCTTATAGAATGATTGGACTTGGAAATATCCTTTCC
GTGGAAAATAACATAGTGAAATAACAACACCCGCATATAAGAAGTCACATGGAAGAAGTCATTCA
TAAAAGACTTCGGCAACTCACACTGGAATTGGGTAAACATTTACGTCGAGCTGAGCCAATAGGGG
ACGGTAGGACGGATTCCTTTGTGCTATGCGACGAGACGAAGAGGGAGACTATATTCGAAAAACAA
GGGTCAAGTAGGGGAGCCATCTCAGGTAGGGATCTCAACTACCAA


Right flanking sequence: Indices 216919 -- 217418
AACAGGCTCTCCAAGACCTGACCACCTTGAAGAGTCCAAACCTATCCAAACTGAGATGCAAGAAC
CAAAAAGGTTCAAGCACAGAGTTTGATACTGAATGCACCCAAGAACCTGCAGCAGCCATGTTAGA
AAGGTAGGGAAAGCTCATACCCGCAGTCCCGCATCCCTAACTTGTTGCGGGAGTCAAACTCTCAA
TGAAGTAAGACTCAATTCCCAATTTCATTCCCAGGTAAGTGTAGCGACGAATAGGACGAGCTAAG
GTTGCGAACAGGAAGTTTGGTTGAACAAGCCATGGTAATGCCGATCTTGTCGACGAACAGAAAAG
AAGGTATCCAGCTTTGACAGAAGCTTCTGATACTAATCACACATGTATGGACTTAGTCCAACCCT
GATTGATCTAGAAAAACCCAACAAAGAAGGCGGGCGAATATGATGCTACGCAGCGAACAGGGAGA
AGGTGACGAAGGATATGAAATAGCTCAGGGACACAAGCTGACCAG



Found at i:237478 original size:25 final size:25

Alignment explanation


    Indices: 237450--237500  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

     237440 GCGAAAGCGA

                                     
     237450 TAGAAAGAATAGCTATCTTACTTAT
          1 TAGAAAGAATAGCTATCTTACTTAT

                                     
     237475 TAGAAAGAATAGCTATCTTACTTAT
          1 TAGAAAGAATAGCTATCTTACTTAT

             
     237500 T
          1 T

     237501 CCCCAATTCC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37


Consensus pattern (25 bp):   
TAGAAAGAATAGCTATCTTACTTAT

Left flanking sequence: Indices 236950 -- 237449
GAAGCTTACATACAAATCCACCACAAATTTTAAAGATCGCACGGATTCTCCTCAGCCATCAAGGC
TATATTATATACGCGGATCGGGTGGTAAAAATGCCAGTTCGAGAAGAACTCCAAACATAAGTATC
AGGCATATTGCTAATTCTGGGGAGAGGATAGCACAAAATCCTTGTTGCAGCTTCAACAGGGACTT
GAGCAAAGATATTTTCAGAGTTCCAGACTCCGGAGCTCAGTATATAGTCACTAAGACGGACATTA
GAATCAACATTCTCGGCTATAACATTATCATACTCCACCAGCGATTTGTCCAGCCACCAAGGTAG
GATCACATTTCAATAGGACCGGGCAATGATCCCAGTGCAACCGTCGAGTAAATTTGGAAGACCTT
TGAATAGACCTTTCCACGAGTGAGACCAGCTCGACGAAGGTGAAGCACATAACTAATAGGGTTCA
GGGAAGAACCGGAAGATCAAGATTCAGAAGAATAGGCGAAAGCGA


Right flanking sequence: Indices 237501 -- 238000
CCCCAATTCCCTGTGCAGCTAGATTGCTTGATGCGAGATTACGATGAAAAGGAATGAAATCGAAA
TAAAGAGTTGCATCCCTCCGAAGTAAACCCCTTCTAATCTCTCTGGCTGAATTGAATGGATGAGG
ATTCGAACAAAGGGAATAAAAGATTACAAAGACATTCCTAAAACAAGTCCAAAAGTAGAGAATCC
CTGAGAGAGGCATAGTACGAGAGGAAAAAAGGATTACCATGACCTATACTCGATTGCTACAAGTT
CGACGTTATACCGCCCTTCGTACTCCCAATCCAAATACTTCATTACAGTTTTAGAAAGAAAGCGT
ATAACATTCATTCCCAAAGAAGCTGTATTTCTACGTGAAAGCTCAGTTTATTACTACGTGAAAGC
TCAGTTTATTAATTTTCTAGTGGCCTCTTTTACCACTCCTCATTTATCATATTCTTCAAAGACGG
GAAAACGCTACCTTTCGAGAGTTGCTTCGGATTACGTCTCATCCC



Found at i:237877 original size:23 final size:23

Alignment explanation


    Indices: 237851--237901  Score: 93
    Period size: 23  Copynumber: 2.2  Consensus size: 23

     237841 AAAGAAGCTG

                *                  
     237851 TATTTCTACGTGAAAGCTCAGTT
          1 TATTACTACGTGAAAGCTCAGTT

                                   
     237874 TATTACTACGTGAAAGCTCAGTT
          1 TATTACTACGTGAAAGCTCAGTT

                 
     237897 TATTA
          1 TATTA

     237902 ATTTTCTAGT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   27  1.00

ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39


Consensus pattern (23 bp):   
TATTACTACGTGAAAGCTCAGTT

Left flanking sequence: Indices 237351 -- 237850
TTCCACGAGTGAGACCAGCTCGACGAAGGTGAAGCACATAACTAATAGGGTTCAGGGAAGAACCG
GAAGATCAAGATTCAGAAGAATAGGCGAAAGCGATAGAAAGAATAGCTATCTTACTTATTAGAAA
GAATAGCTATCTTACTTATTCCCCAATTCCCTGTGCAGCTAGATTGCTTGATGCGAGATTACGAT
GAAAAGGAATGAAATCGAAATAAAGAGTTGCATCCCTCCGAAGTAAACCCCTTCTAATCTCTCTG
GCTGAATTGAATGGATGAGGATTCGAACAAAGGGAATAAAAGATTACAAAGACATTCCTAAAACA
AGTCCAAAAGTAGAGAATCCCTGAGAGAGGCATAGTACGAGAGGAAAAAAGGATTACCATGACCT
ATACTCGATTGCTACAAGTTCGACGTTATACCGCCCTTCGTACTCCCAATCCAAATACTTCATTA
CAGTTTTAGAAAGAAAGCGTATAACATTCATTCCCAAAGAAGCTG


Right flanking sequence: Indices 237902 -- 238401
ATTTTCTAGTGGCCTCTTTTACCACTCCTCATTTATCATATTCTTCAAAGACGGGAAAACGCTAC
CTTTCGAGAGTTGCTTCGGATTACGTCTCATCCCCCGTTCAAAAAACCCTTCTCTTTCCCTTTGA
AGAAAGCCCTGATCGCCTATAGGAAAACCTTCTTACTGCTCCACCTGAGCTTAACTCCCTGCTTT
ATTTAATGGGGCTTGAATACCTATTTGATGGGGACTTTTCCAAGTCCTCTTCTAAGAATCGTATC
CAAAGACTATTAATTAAGTCAGCTTGTTAGCTTTGTCTGTTCTGTAAAGCGTGGAAGTCGTCTTC
TGAAAAGCCGAAGAAAGACTTTTCATTTAATGAGTCAATTAGTAGGTGAGTCAATTAATTGATTG
AATTGGTTGATTTAATTGGTGACTGAGTCACAATGACTAATTGAGTGAATATAAAGTATGTTTGC
TACACTTGTTAGTAAGGCAAAGAGTCTAAATTATTGAACTATTAA



Found at i:238721 original size:17 final size:17

Alignment explanation


    Indices: 238699--238750  Score: 104
    Period size: 17  Copynumber: 3.1  Consensus size: 17

     238689 GACCAAACCA

                             
     238699 TACCATAGTGTTGGATT
          1 TACCATAGTGTTGGATT

                             
     238716 TACCATAGTGTTGGATT
          1 TACCATAGTGTTGGATT

                             
     238733 TACCATAGTGTTGGATT
          1 TACCATAGTGTTGGATT

             
     238750 T
          1 T

     238751 GATGGCTGAT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   35  1.00

ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42


Consensus pattern (17 bp):   
TACCATAGTGTTGGATT

Left flanking sequence: Indices 238199 -- 238698
TGTTCTGTAAAGCGTGGAAGTCGTCTTCTGAAAAGCCGAAGAAAGACTTTTCATTTAATGAGTCA
ATTAGTAGGTGAGTCAATTAATTGATTGAATTGGTTGATTTAATTGGTGACTGAGTCACAATGAC
TAATTGAGTGAATATAAAGTATGTTTGCTACACTTGTTAGTAAGGCAAAGAGTCTAAATTATTGA
ACTATTAAAGAACAAGTAGTATCTTTTATTCAATTTCATTATTTAGGGAATCAGTTGCATAATAA
TAATCTAGATGCAACAATGACTTCGTTCTCAAAGCCTACTTATATAAAGTACCTTCTCCCTGTTC
GCTGCGTAGCAGCAATGAATCACCTCGTCATCCTCTTCTCCTTACGGCATAAATCACCTATAACC
CTAGCCTTAAGTCCGTATATTCAACATATCCTTCGGCAGCTGGTTCTGCGACAGCGGATCCTTTT
CATACTGTTCGCTTAAGGGCGTAGCATCACCTTCGGACCAAACCA


Right flanking sequence: Indices 238751 -- 239250
GATGGCTGATTGGACTAAATAAATGGGATGAGACTACTAGCATCGCGGTTCCTTATATGAAGAGT
GAAATGAATCAATCAATTACTGTTCAATGGGATCTTCTCTACGACCGGTGCGACCCCATTTCGGT
GCAACTGATTCTGCGACTTCGGATCCTTCGCCTTACTTTCTAGGCGGCTAGGAATGGGATCGGGT
ATTCAAAAAGGATTATCATCTTTCTTTAACTACCAGGTTCAGAATTCGAAGACTCTCTCCCTGAC
TCGGACAACCATTAACGTCTCAACGCAGCTCGTCTAGGCAAGTGTTGAGCCGAAGCGCCTTTCTT
TCTCTTCTTTTCTTTTACTTACGTCCACGCTGGAAAGATCATTTGAGAACAAGACGCATCAGAAG
GAAGAAAGTGACCAAAGAGTTACCTGTTCTCAGAGTCCATAAAAGCGGTACCTAGGATAATTTCT
ATAAGATGTCCCTATAGTTCTTCGCGCGTCGGGATTGATATCTTC



Found at i:241817 original size:37 final size:37

Alignment explanation


    Indices: 241767--241840  Score: 148
    Period size: 37  Copynumber: 2.0  Consensus size: 37

     241757 TCTCTACGAT

                                                 
     241767 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC
          1 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC

                                                 
     241804 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC
          1 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC

     241841 TCAGACACAG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.16, C:0.35, G:0.16, T:0.32


Consensus pattern (37 bp):   
CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC

Left flanking sequence: Indices 241267 -- 241766
ATCTTTTGAATATAGGGTCATCAACCCCAGCCAAGAGAGATTCGTTGGGTTTGTGTAATCCCTTT
CATTTTGAAGGAAGAGGCAGTATCAAGTACTGTACCATCAGTCCCTGGCTCTAATGTTGAACCAG
TCTGTGTCCCTTTTTAATAATAGTGTAAGCGAGAAGGTAAGATAAGATATTTCAAAATTCTATAA
CCGCAGAAGACAGCTAGCACTCGAATCAAGCAAGCCAGTTTCCTTCGATTACAGATGGAGCCCAA
AGGACATCATCAATTCATTCTGCATGCGAGCTAGTAGACAGTTAAAGCAAGGTATTATGGAAAGC
CAACAGCATCAACAAATAGAGCAGCGCTATCCAACTGAAGCTTGCAGGAAGTCGTCAAGGGTCAA
TTCAATCTCTGAGGCTGTGGAAGTTGGACTTTCTAACCTTCTTGACCTTCTATTGATTGTACCTG
GGTTTAGTTATTAACTACTTGCTAGCTCAATTTCATCTCTACGAT


Right flanking sequence: Indices 241841 -- 242340
TCAGACACAGATACAGTTTTATGCTCAGTAGTGGTATAAGGATTAGGAGTGGGAACATAGTCAGA
AGTAGCTACATTCGCATATCGTGTAGGAAAACCAACAAGATCTCAACAATAATCACTAGGCTTAA
CGCTCTCTTCACCGAATCACCATAGTGAACTTCCGCGATCCTCGTCCACTTCTCCACTGTCATAA
AAAGCCTGAATCTCCTTCTCGGGCAGGCCATAACACCTTCATTTCCTCAGCTAAACACAAAGACT
CACTCCTCGATGTAGGTAAGCGACTGGAAGAGTATTAAAAAGAATTGTTTCAAGAAGACAACTAG
CATTGCTTACACAATCAGGGAGGAATTACTCAATATTCACTGAAGCATCAGAAGAAAGCTCAGTG
TCAGGTTCAGCACTATCCATCCTGCTAGATTCCCTATCATCTGATGGCACCAGTCAGCATCAGTT
TCCATAGAGGAGTTGAGCAGCTAGCAGGTTCTGAAGATGAGAAAG



Found at i:254839 original size:21 final size:21

Alignment explanation


    Indices: 254813--254854  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     254803 AGGTGAAAAA

                                 
     254813 GACAAGCCTTATAAACAGGCC
          1 GACAAGCCTTATAAACAGGCC

                      *          
     254834 GACAAGCCTTCTAAACAGGCC
          1 GACAAGCCTTATAAACAGGCC

     254855 TTAGTGAACA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.36, C:0.31, G:0.19, T:0.14


Consensus pattern (21 bp):   
GACAAGCCTTATAAACAGGCC

Left flanking sequence: Indices 254313 -- 254812
ATATTATTATTAATAATCTAATAAATCCCGTAGGTTGTGAATCATATTCTTTTGCATCTCCCGTA
GTATCTAAAGCAAGTCGTATTTCTATTTATAGCTCTTCTTTACAGCTTGCTTTCCTGGCCGAGAC
CAAGAGATAATTCCGGTTCTTTTACTTGAACTGAACATCCTTTTCGTCGATATGCCAACTACAGA
ATATCCCTCCGTAATCGTACAAGTCTGTTGAAGCTGAAAACTAAGGCACGATGGTGGGTGAATGA
ACATCTACCATCCTACTCAGCTCCTACTTACGTCTCAGCTCCTAACGTACTCAAAGCTGATAACG
CTACAAAGGTACGTCAGCCTGTTAGCGGTTACACATCTATTTCGCCTAATCGCACAAGGGAATCC
ATGGCTATCCTCCAACCGCGCGGGTTGTAACAAGTAAATAAAAAAGAACTATACGCTACGGTGAA
AGAGAGTCAAGCAATCCATCATCAGGAAACTTTGAAGGTGAAAAA


Right flanking sequence: Indices 254855 -- 255354
TTAGTGAACAAGTCAAGTGAGAATGCAGTAGCTTTGAGATCAACAACAGTGATGTTGAATCGTGA
AACTGATGTGGAACTGCGCATAAAATAAAAATCTTTCTCGTCGATCGATCAAATGACAGCTCTTA
GGACAAAACCGAGAAGAACCAGTAGAAAAACAGAATAGCTTTATTTAGAGCATAGCTTTCTTCAA
AGGAAGCCAAAGCAGATGCAAGGATAAGGCAGTTAACGGGCTTGACCAGATTAAGAAAAGCAAGT
CAAGGAAAAGGAAGTTATCAAAGAGTGCGAGAGTGAGAAGATCTGATCTTACGATAATTCTAATT
CATATGATTCCGGATGAATAGAATCAAAGAATCCGATGCCAATAAGAAACTCAAAAGAGCTCCCT
ATTTATCTAGCCCTTGAGGAAGTAAAGGCAGGATCAGAGCATGCGTCTTTAAATAACAAATACCG
GGAAGGTAATTTCTATCACTAGTTCGTCGCCCCGGTTCATGAAAG



Found at i:255485 original size:25 final size:25

Alignment explanation


    Indices: 255451--255502  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

     255441 AAGCGGTCTA

                                     
     255451 GTCTATTTCCTCTATCTTATTGAAT
          1 GTCTATTTCCTCTATCTTATTGAAT

                                     
     255476 GTCTATTTCCTCTATCTTATTGAAT
          1 GTCTATTTCCTCTATCTTATTGAAT

              
     255501 GT
          1 GT

     255503 GGCCCGGGAG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52


Consensus pattern (25 bp):   
GTCTATTTCCTCTATCTTATTGAAT

Left flanking sequence: Indices 254951 -- 255450
TCTTTCTCGTCGATCGATCAAATGACAGCTCTTAGGACAAAACCGAGAAGAACCAGTAGAAAAAC
AGAATAGCTTTATTTAGAGCATAGCTTTCTTCAAAGGAAGCCAAAGCAGATGCAAGGATAAGGCA
GTTAACGGGCTTGACCAGATTAAGAAAAGCAAGTCAAGGAAAAGGAAGTTATCAAAGAGTGCGAG
AGTGAGAAGATCTGATCTTACGATAATTCTAATTCATATGATTCCGGATGAATAGAATCAAAGAA
TCCGATGCCAATAAGAAACTCAAAAGAGCTCCCTATTTATCTAGCCCTTGAGGAAGTAAAGGCAG
GATCAGAGCATGCGTCTTTAAATAACAAATACCGGGAAGGTAATTTCTATCACTAGTTCGTCGCC
CCGGTTCATGAAAGTTCATTGAATCGATTGCTGAAGAGTTAGTTGCATAAGTCTTTTTGTCTCCC
TGTTCTTTCCTTTTCGAGGTATCACTCATTCTCGAAAGCGGTCTA


Right flanking sequence: Indices 255503 -- 256002
GGCCCGGGAGCTGAGCCATAAGGAGAAGAAGATGTAAGCGAAACGACGAAAAAGATAATATTTCT
GCCAATCTAGCTGCCACATGGAATTGATTTCCAAGGTTTCTAAAGGATTGAGCTGAAATTGCCCC
TTAAGAATGAGTTTCGGGTGATAGCTCGCTCGGGGAAGGGATCCGTCTTACAGCACCTTTGCTAT
CTCTCGTTAATTAGGCGCTCTCGGGATATGCTTCTCGGATGACTTTCTTATTGTTATTTTTTTTA
TGCTGATGTTTAGGTTTTATCTGGGGGATAAAGCGTGTTCTTCACTGATTTCCTTGTAGGCACCG
ATGCACCGGCTAGTCCTTTCTCCATAGCCAAAGTCATAAGCTGAGCACATCCTGTTCTCTTATCT
TGAGAATTGTCAACCATATAGTTGGGGTTGCTTTCGATTGGTTGAATTCTTTAAAGATTTTCTCC
AGGTCACTATAGAAAAAGCCCTATTGTTCACAATTTCATCTAGAC



Found at i:258940 original size:24 final size:24

Alignment explanation


    Indices: 258908--258956  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     258898 GCCCTCTCCT

                                    
     258908 TGTAAAGCTTCGTCTCTTATTTTA
          1 TGTAAAGCTTCGTCTCTTATTTTA

                                    
     258932 TGTAAAGCTTCGTCTCTTATTTTA
          1 TGTAAAGCTTCGTCTCTTATTTTA

             
     258956 T
          1 T

     258957 CGGCCCCAGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.20, C:0.16, G:0.12, T:0.51


Consensus pattern (24 bp):   
TGTAAAGCTTCGTCTCTTATTTTA

Left flanking sequence: Indices 258408 -- 258907
GGAATAACACTCGTATATATTGAGCTCGTAATGGTACCTCGCAATTCAAAAGTCTCTCTACGGCT
GAAGAATGAGCGTGTTCTTGGGCCATCATAGAAACATAGATAGGGTCAAAGACGGAACGAACAAC
GAAACTTTACGACAGCTGTTTCGTACACGTTCACTTGCATCACATACACAAGTGCTCTATGAACC
GTGCAATAAGGTCACCCATAACACGGCTCTCCCACTTGAGTTACCTTAGCTACAGGCCATGCTAT
TCAATGATATTGGAAAAATAGCAGCGTAACGTAACAACTAGTATTGAAAGCTGGTCGCCTTTGGA
AGCGTTCGCCAGTAAAACAAAGAAGTCATCCTTGATGATTTCCCATTCCTTACCTGCCGAGCCGA
CTCTCTTCGCCATTCGAAGTACTACCTATGCCTTCCCTTTCTATAACATACCCAAGCGCCCTCCT
TTCCAATCACTAAGAAAAAATCAATACCAATCAAAGCCCTCTCCT


Right flanking sequence: Indices 258957 -- 259456
CGGCCCCAGGGGAGTTTACTCGAACCATTCCCCAGTCTCCCGCACTGCTCAAGTAAGTGTGCGAC
TCCGTATGAGGACCTCCTTCCCAATAGCCCACTCTCCGTTCACACGGTTCTCAAAGCGGAGGAGG
AAGGGTGGGCAGCAGGTACTACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTC
ACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGA
TGTTTCGCCATAGAATAGATCGACCCAGTTCCCGTTCTTTTTAGGTGCACTCGCTTTATATCTCC
GACACACAAGGAAGGACGCGGTGGGAAGGAAGCAGCCCTTTCCTCTGTCCGGACGATCATTCCGC
TGGCATCTTGCATTCACGTCTCCGTTTGACTGCCACTCGGGGATGTAGTTGTAGATACGTTAGTT
AGTCTTAGTGGGTCGTTGTCTCCACCTGTTATCTCCTTCTACGAC



Found at i:263490 original size:27 final size:27

Alignment explanation


    Indices: 263452--263514  Score: 117
    Period size: 27  Copynumber: 2.3  Consensus size: 27

     263442 CAATCATTCT

                                       
     263452 CCTCTCGCTTTCGAGCGTTCTTCGAAA
          1 CCTCTCGCTTTCGAGCGTTCTTCGAAA

                           *           
     263479 CCTCTCGCTTTCGAGTGTTCTTCGAAA
          1 CCTCTCGCTTTCGAGCGTTCTTCGAAA

                     
     263506 CCTCTCGCT
          1 CCTCTCGCT

     263515 GGAGATCTAT


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   35  1.00

ACGTcount: A:0.13, C:0.35, G:0.17, T:0.35


Consensus pattern (27 bp):   
CCTCTCGCTTTCGAGCGTTCTTCGAAA

Left flanking sequence: Indices 262952 -- 263451
CTCGACGTATGACCTTTGGCTCAATCACGAACTGGACTCGAACCACCCTCTCCAGATGCGTACGA
TCGATTGATTGTCCCTTTTGAGGGTTCGATAATAGGATTGGGTTCTGTCCTTTTCCATAAGATTT
TCGGTCGCTAAAGAAAAGAGACTTTTTCTTTTCGCTCTTTATCGACTTGGTTGAACACTGCGGGA
GGATCGTCGTGGTTCTATGCTGATTCGTTTGGAGCTCCTAGTAGCCCTTCCCGTTCATTGCCATT
CTTGCTCTTGGTTGGGTACGCCTCCCAAGGGATGTTCTTACTTGTGCCTTCCCATTCCCGTATCC
TGTAGTAGCCCGCAATTGTGTTAAGGCGAATAATTGGCAGCTTGCCATTTGCACTTTCCTAGGGA
GCGATTTGCGGTCGTGATAAATAGGTATATGATTATATCAGCAGATGTGTGTGTGTAACTTGATC
TTCCGCTATAGAAAGAGTGAACCAAATAATCTAGCCAATCATTCT


Right flanking sequence: Indices 263515 -- 264014
GGAGATCTATACTTTTTTCACCCAGGTTAACTAGAACTATAGAACTACATAAATAAGGTGTCTAA
CGGTACTTTCGAGCTCTAGGGGGTTTGGATACAAGTTTGCAGATGAGTTTCCAGCTTTATTACGT
ATTACGATCACAGACCTTGATCTAGTTTCAGTTGTCATTGCCATCCTTTGATGGAACAAATAGAT
AGGCAGTAGACTAAGAGATAAGGGATATAGCTAACCTCCTCTCTGTGAGACTCACTTTGTTGGAA
GTAGATCGCGAGAATGCGTGTTCTGATGAGAGCAGCCTAGTTAGAGGAAGGCGAGTCCTAGTCAA
TGCCTGAAGATCCTTCTTTCTATTCACTCCTAAGGTCAATGGGTCTCATAGCAAACCATTCATTC
ATCTAACTTTGGAGTAAGAATATTCTCTATGGCTTATGGCCTGTCAGGCCTAGTTTTACCCTTTC
TCGAATGCTTTACCACACCCCATCCCTCTAGCTAGAAGAAGAAGG



Found at i:269709 original size:36 final size:36

Alignment explanation


    Indices: 269662--269733  Score: 144
    Period size: 36  Copynumber: 2.0  Consensus size: 36

     269652 GGGGTTCAAG

                                                
     269662 AGAGCCAAGCGACAGAAGGCGAAAGCATACACTAGC
          1 AGAGCCAAGCGACAGAAGGCGAAAGCATACACTAGC

                                                
     269698 AGAGCCAAGCGACAGAAGGCGAAAGCATACACTAGC
          1 AGAGCCAAGCGACAGAAGGCGAAAGCATACACTAGC

     269734 GGCCCCCGTA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   36  1.00

ACGTcount: A:0.42, C:0.25, G:0.28, T:0.06


Consensus pattern (36 bp):   
AGAGCCAAGCGACAGAAGGCGAAAGCATACACTAGC

Left flanking sequence: Indices 269162 -- 269661
CTATGAAGATTATTGGGTCTTTGGTTATTTGGTAACTTTATGTAAAAAATTCAATATGTCAAGAT
TAATTATTGGGTTGGGCATCTTATTTTATGATAATGGGCATGGAAGCTTTAGGTACATTGGGTTT
AGTCATTAATTTTTGAAGGATAAGGCCTATGACGTTATGGCCACATTTTAGGATTTAGTTTCCAA
GTTCGGAAGTTGAAAGTAGGGGCTGACTTAATAAGTAAGGCGAAGATGACGAAATAGACCCGCTA
CCCCTTTTCGATAGCTACCCGAAAAAAAAAACAACGTTCGACTCATGAAACTGCTTTAGTCATCG
AAAGATAGGAGATATAAGTTACCATTTCTCGTCCACCAGCGAAACTATACGATTTCGGAAATCAA
GCAAAATATCCACACCACACAATAAGATAGAGCTCTATCTACCCTTTTTATTAACCCTCTTTGCA
TAGGCTCGTGCACTGATTTACGTTCAATAATCCCAGGGGTTCAAG


Right flanking sequence: Indices 269734 -- 270233
GGCCCCCGTACCCCAGCACCTTACGAACATCCATCCCTTGTGACAAAAAGAGAGAAGGCAGAGAA
CGACCCCTCGATAGTCCTTCAATTGTGTTATGGCATCCTCTTTCGAGGTCGTAAGGCTTCAGCCG
CAAGCAAGGACGGGCTTCTACTTGTTTCCGGGAAAAGCAAGCGTCTGATCAGATCAATCAAGTCA
ATCAAGTTAATCAAGGACTGGGCTGTCGAGTGAGGATTGGCCGAGGCTCGAGTTGAGCATGTAGC
CGGGTACAAATAAGCCAGTAAAAGAGGAGTAGGCAGGGTACGACGAAGCACGCGTGGTACGTAAG
CGAATACGGATCACGTGGGTTTGTACTGATCCGCTTTCGAGCTGTCGAGTGACGATTGCTCCATC
TATGAAGAAAGGACGCAGGGGGCCTCTCTTATTATAAAGGGGGGGTACTCTCTTCTCTGATGTGC
GCTATATTATTGTGTCCTATTCCTGAAAGAGTTTTCGGGATTAAG



Found at i:280767 original size:17 final size:16

Alignment explanation


    Indices: 280748--280794  Score: 55
    Period size: 13  Copynumber: 3.1  Consensus size: 16

     280738 ATTGCGTATA

                            
     280748 AAATAAATCAGTCGAT
          1 AAATAAATCAGTCGAT

                            
     280764 --A-AAATCAGTCGAT
          1 AAATAAATCAGTCGAT

                         *   
     280777 AAGATAAATCAGTTGAT
          1 AA-ATAAATCAGTCGAT

             
     280794 A
          1 A

     280795 CGCGCCAACA


Statistics
Matches: 26,  Mismatches: 1, Indels: 7
        0.76            0.03        0.21

Matches are distributed among these distances:
  13   12  0.46
  14    1  0.04
  16    1  0.04
  17   12  0.46

ACGTcount: A:0.49, C:0.11, G:0.15, T:0.26


Consensus pattern (16 bp):   
AAATAAATCAGTCGAT

Left flanking sequence: Indices 280248 -- 280747
GCTGTGTGTGGGTCTTAACCCCATATCTCTGCAGCTAAGCCAGTAAAATGGATGTGTGTATTTGC
CTACAGATCAAAAACTTTAACTGTAAAAGAGTCATTCTCGACAAGACAAGGATCAGAATGGGTCT
CCAAAGCTCCCCGCCTTAACTTTCTCAGCTGGACTTTCTCTTGTTTCTGTTGCCGAAGGAGAGGA
GGTCTCCGGGTTTCCTTCTTTCTATGTCGATTCAGCTGAACGAATAGGTGCTTTCCAGCCAGTGA
GTAAAAAGAATATACCTCATTCTTCCCCAACCAAGTCATCAGATGAATTTCTTAAGTTTTCGGTT
GACAAGACTCCAGCTAAGAAGGTGGTTCCTTGACGCATCTTCATTTTCAGGAGGGTGTGCTTTAG
CACGGGAAAACATTAAACGGGAAAATGCAACTTACATCCCGAACAATCGAAGGGGTACAGAACTG
AACTTTTACTTTTACTCAAGCTTGAAAAAGAGGTAATTGCGTATA


Right flanking sequence: Indices 280795 -- 281294
CGCGCCAACAGGATTGTAGCGAGGGAGATGCTATGCTAAGAGACAGCTGGGCTACCCTTTCGCCT
GCACTAATGAAGACGTGGAGTCTATCTTGCACAGCTAGCTATCTTTCTTCCTGAACTGAATAAGA
TTTGGCGAACGTTTGAATAGGACTTACTCGGGGAATCCTTATGGAACTCTAAACCTATGCCCCAA
ATTACTAAGCACCTCTATCATCCCCTTCGGTTACTCAAGCAGGAAATGAGGATTCTGATTCTCAT
GAGTCAAAGTATGATGAGTAGCTCCCCCTTTTTTTTCTAGCTAACGAGTTGGTAAAGAATGAACG
GGTTTAGAGCGAGTTTCTCAAGTACTAGAAAGAATGCCCGTTTCCTCTCTCTCCGAACGAGGTGC
TCGCTCCCTACTGGCCTATACTCGTGCGATGGGAATTTCTACAAAGACTTTGCCCACATTTACAT
TTGTCAGCTACACCTCAAGATATTCAGGAATGATTGAATCAACGC



Found at i:280784 original size:18 final size:17

Alignment explanation


    Indices: 280745--280794  Score: 54
    Period size: 17  Copynumber: 3.2  Consensus size: 17

     280735 GTAATTGCGT

                *            
     280745 ATAAAATAAATCAGTCG
          1 ATAAGATAAATCAGTCG

                             
     280762 AT---A-AAATCAGTCG
          1 ATAAGATAAATCAGTCG

                           * 
     280775 ATAAGATAAATCAGTTG
          1 ATAAGATAAATCAGTCG

               
     280792 ATA
          1 ATA

     280795 CGCGCCAACA


Statistics
Matches: 28,  Mismatches: 1, Indels: 8
        0.76            0.03        0.22

Matches are distributed among these distances:
  13   12  0.43
  14    1  0.04
  16    1  0.04
  17   14  0.50

ACGTcount: A:0.50, C:0.10, G:0.14, T:0.26


Consensus pattern (17 bp):   
ATAAGATAAATCAGTCG

Left flanking sequence: Indices 280245 -- 280744
ACTGCTGTGTGTGGGTCTTAACCCCATATCTCTGCAGCTAAGCCAGTAAAATGGATGTGTGTATT
TGCCTACAGATCAAAAACTTTAACTGTAAAAGAGTCATTCTCGACAAGACAAGGATCAGAATGGG
TCTCCAAAGCTCCCCGCCTTAACTTTCTCAGCTGGACTTTCTCTTGTTTCTGTTGCCGAAGGAGA
GGAGGTCTCCGGGTTTCCTTCTTTCTATGTCGATTCAGCTGAACGAATAGGTGCTTTCCAGCCAG
TGAGTAAAAAGAATATACCTCATTCTTCCCCAACCAAGTCATCAGATGAATTTCTTAAGTTTTCG
GTTGACAAGACTCCAGCTAAGAAGGTGGTTCCTTGACGCATCTTCATTTTCAGGAGGGTGTGCTT
TAGCACGGGAAAACATTAAACGGGAAAATGCAACTTACATCCCGAACAATCGAAGGGGTACAGAA
CTGAACTTTTACTTTTACTCAAGCTTGAAAAAGAGGTAATTGCGT


Right flanking sequence: Indices 280795 -- 281294
CGCGCCAACAGGATTGTAGCGAGGGAGATGCTATGCTAAGAGACAGCTGGGCTACCCTTTCGCCT
GCACTAATGAAGACGTGGAGTCTATCTTGCACAGCTAGCTATCTTTCTTCCTGAACTGAATAAGA
TTTGGCGAACGTTTGAATAGGACTTACTCGGGGAATCCTTATGGAACTCTAAACCTATGCCCCAA
ATTACTAAGCACCTCTATCATCCCCTTCGGTTACTCAAGCAGGAAATGAGGATTCTGATTCTCAT
GAGTCAAAGTATGATGAGTAGCTCCCCCTTTTTTTTCTAGCTAACGAGTTGGTAAAGAATGAACG
GGTTTAGAGCGAGTTTCTCAAGTACTAGAAAGAATGCCCGTTTCCTCTCTCTCCGAACGAGGTGC
TCGCTCCCTACTGGCCTATACTCGTGCGATGGGAATTTCTACAAAGACTTTGCCCACATTTACAT
TTGTCAGCTACACCTCAAGATATTCAGGAATGATTGAATCAACGC



Found at i:284094 original size:20 final size:20

Alignment explanation


    Indices: 284069--284109  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     284059 GACTGACATA

                                
     284069 GGAAAGAGGGTCACCTAATG
          1 GGAAAGAGGGTCACCTAATG

                                
     284089 GGAAAGAGGGTCACCTAATG
          1 GGAAAGAGGGTCACCTAATG

             
     284109 G
          1 G

     284110 CTGTTGTAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.34, C:0.15, G:0.37, T:0.15


Consensus pattern (20 bp):   
GGAAAGAGGGTCACCTAATG

Left flanking sequence: Indices 283569 -- 284068
TAAATACAACAAAGTGTCATTTCGCCCCTTCCCGAGGAGTCTTCTTAACTGACTTCATCACATAG
TGGCTACACCTGGCTAGATAGAATTGGCTTTGGCGCGTTAGCCTATCGTTTCAGCAAAAGAGAGA
TTCCAGTAAGGAAATTTGGCCTCTGAGTTTAGAGTTGGTATAAAGCTTTCCCTTCCTACTGATAT
TCTATATCCGTGAGCAGATGAATAATAGGAAGTCAAGGAAAGAGGAAAGGAAACGGAAGAGATAG
CTACTTCGGAAACTATTCATTTATGGAGAGCCGAGTACTCAGAAGACGCTTTTACTCCGCCTTCA
GAGCTCGATACTGAAGCGTTAGATACTACTTTTGGTATCTTCAACTAGTCAAAGCAGAAGGACCA
GACCCTTGATCTAGGTGCATTGTAAAAGCCCCTCAACCCGATAGAAATTCCTTGGGGCTTAAGTG
ATTTAATAGAGAGTTTCTGCCTATTTGGAACGAACGACTGACATA


Right flanking sequence: Indices 284110 -- 284609
CTGTTGTAAGCTCGCAGTGAAGTTAGGCAGTAACAGTAACATAAAGTACGGAGCCAGTCAGTTTG
AATGGAGTGTTCTTCACAGTAGGGAATGGAGCTAAGCAGTAATCTAGCGATGAAGAAGCTATCCT
ATCATTAGACTAGACTAGCTAGCCTTCCTTTGGCAGATTGTTTGTCATAGCTGACTTTCGTTTCG
TAGCCGGGAAGGAGACTTTTATTATCAGATGGGGGATTACCTGTGGATGAGGTCTTTTCCTATAA
GACATTAATTTACGGTATGGAGTCCTGCTTGACTTATTCCACTTTCTTTTCCTTTGCTCTGGTTG
TTTCGGGTACGGGCAGGGAATAATCATAAAGCACCTCTGCAAGACCTCCTCGATCGCTAGTGACT
GATGGCGGTTATTGATTGCAAGGGAACGTGGTTGCGTTGCCGATCTTGAGTGAGCATGGCCAGCC
GCGTGTGGGTCAGACCCTGTTATCCCTTACTACGAATTCTACCCT



Found at i:287970 original size:17 final size:18

Alignment explanation


    Indices: 287948--287982  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

     287938 TTCTAAAGAG

                       *      
     287948 AGATCATT-TTTTAGTAT
          1 AGATCATTCTTATAGTAT

                              
     287965 AGATCATTCTTATAGTAT
          1 AGATCATTCTTATAGTAT

     287983 GTATGATGTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49


Consensus pattern (18 bp):   
AGATCATTCTTATAGTAT

Left flanking sequence: Indices 287448 -- 287947
CTTTCACGACTGATTAACTCGCTATTGAGATAACCCAATTCCTAAACCAATTCCTTGGCCAAAGT
AGCTTGCTAGAACCGGCTCTTCATTTATTGTTTCTGACGTGGCCTAATCTCCTACTTCCATACCC
GCTTTCGCCAGCAGAAGCCCCTGTTTCGGATGTCCTACTTCCCGAAGCAAGTATTAGTAAGAGCG
ATATCCTTTCTAATTAATTTTCTTTTGGGTAAGCAGTTAGTTTAACTTTTGAGTTTCTTATGCGT
TTCTATTCATTCGCTAAATCGCCAGGCTTTAAACAACAGGAGCATACACGATAGGTCGGACTAAA
GGCTTTACACCTTCAGCTTTCTTGATGGCACATCGTTTACATAGATTCCCAGCTCCCCCCCTGTT
TAATATACTCCAGCCCCTTTAAGAGATCATTATTCCTATCTATTCTTTTATTCTATGAATAGAGA
ATATAGAAAGAATGAATAAATGTGATACGGATTGATTCTAAAGAG


Right flanking sequence: Indices 287983 -- 288482
GTATGATGTGGCTATTAGTTTAGGGAAACCGTACGCTTGCTTAAAGTGTATCACACGCTTACCTT
CGCTGCTACGCTACAGCTTGTAGTGGTGGGATCTTCGATGGATAGCTTTCTTTTTTCTTTGGTGA
TAGGAAGAGAGCTTCAATAGCTCGTGCCAGGTAAAGAATGGATCTTCGTTAGTACAAAGTAGATA
GCTAAGAATCGAGGTAGGAGTTTTATCAATCATGCTATAATAGAGAGTATCCGTTGGCAGTGATC
CAATATGCCTTGTATGCTTCAAAATCGAGCTTGACAGCATCACAAGCCCAATCATACTTTTATAT
TGTCCGTCAACAGCCAAAGCAAAGGGCAAAGTCCTTACCAAGTCAAAAGATTAAGATCTAGCTAG
GGCTAGCCGTACAACTTTCTCGAGCTAAGCGTCTTTTAAGAGCTAATACCCTAAGAAATGGGGAA
TTACAGGTCTCGGAACGGCGGACTAACCTGGGGATGGGGATGCTA



Found at i:291719 original size:15 final size:15

Alignment explanation


    Indices: 291699--291729  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

     291689 CTATAGCAAG

                           
     291699 AGGAAACCCTATAGA
          1 AGGAAACCCTATAGA

                           
     291714 AGGAAACCCTATAGA
          1 AGGAAACCCTATAGA

             
     291729 A
          1 A

     291730 TAAAGGCTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AGGAAACCCTATAGA

Left flanking sequence: Indices 291199 -- 291698
TCCCTTTTGTGGGTATTGGTTTGATCTCCTCTCTCAATTCGAGGTTCATGATTGATGAAAGTTTA
TAGAGGAGGGATGCCTAATGGGTTTTCCCAGCTTGAGAGATCAAGGTCGGTAAGGTTTCTCGTTT
AAGCTAGGCCTTTACCTATGGGTAATGCATGCTTTCATGGATGGTAGCTATCAAGCCTAAGAGCT
AAGTTCGTTCCTGCAACTAAGAGATAAGCCTTTGAAGCCATAAGAGCTCTATCCTTTTTCTAGCC
AAGGAGTTTATGCCTTTGGTTTAGTTTCAGACTGGGGTTTGAGGACTTACTTGTGTTAAAGGTCT
CAACGAGCCAACCATCATCTTGCCTATGAACTTGATTGCCCGATTGAGTAAAGTAGGGTTCATTT
CCTTTCCCACGCGCCTTCCCTTCCCCGTTCTTTCCCCTTTCTTTTCTTGTCTTACTCTGGGCAAG
ACCAGGAGGATGAACTTTTATTTTAAGAGAAGAACCTATAGCAAG


Right flanking sequence: Indices 291730 -- 292229
TAAAGGCTTAGCCGCACGGGCAGCACATTTACTTCCTTGAAATCTATACCCGAGAGATAGAATTC
CAGACCCAAAAACTGGAAATCGGACTTATTCTGACTTGTCTTATGGGCTATTTCCGCTGCCATCT
TGCTTCGTAGCGTAATCCCCTTGCTTGGCCCTTTAGCCCGCCCTTAGGGTGAAGTCCCTTTCAAA
AGTCGATTTAGTAGCAGTAGCAGATTAGTCCACAAGAAAAGAAACTGCAAATGAAGATGATGAGC
CCCTTAAACCCCTATGTACGCCAGCAGAAGCCCATGTTGCGTATTACTTGAAAAAACCGGTTAGG
GAAAGAATTAGCGGATAGCGAAAATTCGGGTTAATACTTAAACTCACTTTCGGGTATGTACTTTT
AAAAGCAATTGGTTATGCAAGAAGAAAGACTTTTATCAATAGATCAATTCCCAAACCCCGTAAAA
AATCCTCTTCCCAGATTTGAAGTGTCTTGCGATGACCAAAGTATC



Found at i:294124 original size:15 final size:15

Alignment explanation


    Indices: 294104--294133  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     294094 CCTTATCATC

                           
     294104 TGCTGATATGCTAAG
          1 TGCTGATATGCTAAG

                           
     294119 TGCTGATATGCTAAG
          1 TGCTGATATGCTAAG

     294134 ACATCCGTGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33


Consensus pattern (15 bp):   
TGCTGATATGCTAAG

Left flanking sequence: Indices 293604 -- 294103
TTGGGTTTCCTTTTCTTGTTATCCTTTCCTTCCCTATCTAGAAAGTGAGAATCTATCATCTCGAT
ATCTCAAGGAATAGTAAACTACCGAATATAACAAAAGTGCCAATCAATTAAAGCACTATCGCAGA
GGTGCTTACCTTAAACCGGTTGTTCTTCCTGGAGCTGATTGTATTAAGTCAGTACCATCCCCAGA
GTAAACCTAAACCTCAAAATAAGCCTAAAAACCGGTTCTTGAACCATCTTTTATAACAATCCCCC
ACAAAAACAAATAAACAGCGAGCGGATTACTCTAAGCTTTGGCCTAATTCTCCTTTGCAAGCTCA
TTTACTGACTGACGAGCATAGCTTACATCTTCTTCTATCGTTAAAGCCCCGGGCCTTAGCTAGCT
ACATTTGCTACTTCGTCCTATTCGACTTAGGCTTTTTTGACTACCAACTCACTTGTCTGGAACCC
TGTGGGAGCTCCTTTTTCAGGTTGATATGAATGTCCCTTATCATC


Right flanking sequence: Indices 294134 -- 294633
ACATCCGTGTGTAAGCTTGATTGGAGATATCCTCGCTATGATAAATGGTTAAACAAATGCAAAAG
CTTAACCCATTGTTGACAACTGACGAGCCAAAGCAAAGTAGTTCTTTCTTTCGGGTGCCTTTACA
AAGGTTGCTCGCGGTAGAAAAACTCATGGGCGGGCTCTTGTACCGCTTTTTAACAGGTAGTTAGT
CCCATGGGATGCAAATAAATGGGCTTCTATTTAGAAAAGGCTAACTCTAACTCCTCATGATACCC
CATCCATAAGACCTCGAGTGATGTAAGACCGATACGCTATAGAGTTGGATTCAGCTTTACCTTCC
GAGTCGTCCTATTCAAATATATACCTTCCAGCTCAACCGGATGAGACATCCCTTTTTCTTGAAAC
TGATGAAGGAGTCCGAATATCCATCACTATTACTTGCTTGAACTCCTGTTTCAGTAAAGGCTCAA
CGGGCTGAGTCTCTTCTTTAATAGTTCAATCAGTCCCTCACCAAC



Found at i:296034 original size:28 final size:28

Alignment explanation


    Indices: 295994--296049  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

     295984 TCCAATCATT

                                        
     295994 AAGAACGGAATGGATATTACACTATTTC
          1 AAGAACGGAATGGATATTACACTATTTC

                                        
     296022 AAGAACGGAATGGATATTACACTATTTC
          1 AAGAACGGAATGGATATTACACTATTTC

     296050 GAATCACCTA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29


Consensus pattern (28 bp):   
AAGAACGGAATGGATATTACACTATTTC

Left flanking sequence: Indices 295494 -- 295993
TGCTATACGAGCTGCTTGCCTTTGACTTAATTGAGGTAGGAAACTGCTGACTTGAAAGTCTTGCA
GAGCCTATAATCGTGTTACCACTTAGCAGAGTGTTGTTCTAATAAGGAAAAGCCCCTCCGTACCA
TTCTTTTTTCTTGGGACTCGAAAAAAGCCTTAAGCCTATATATCGTTTAAGACATAGAAGTGGAA
TGGGATCGGTCCATAAGTTACTTTTTGCTTTAAGACGGAATCTACTTTCTCTTTTGAGTTATTTA
TTCGTTGATATTTTTCCAAAAAGGCCTACTTATTCTAGAATAGAAGAAAAGAATCTATACTTGTA
GCAGATGTGGATTGATCCATTTCTGCTAGTTTGAATTATGTTGTGCTCAGCTAAAGACTTGAGTC
GAGTAGAATAGCATGATGAAGGAGGAGGTGTTCAATGTGCTTATCTGGGACATAGGAGTCAGAGC
AAGTAGTAGCTAGGCAACGAAGTACTCTTTCTTTGTCCAATCATT


Right flanking sequence: Indices 296050 -- 296549
GAATCACCTATCGTTGAATAGGGAAGTTCAGTCGAAGACAGAGATGCAGAGGCAGGGAAGAGGAC
GAGAGGGGCGTTAGAGCTGCTACCCCATAAGTAAGGCGACAAACTACGGGCTAAGAGTGAGAATG
TAGCTTCAACTATTGATAGGCTCAGTGGTATTTCCTAGCTGGGTTGATACGTTAGAAGCAAGGTG
TGTAGCCACGTCAGAGGATGAGGGCTGTAAAAAGCAATGAAGATTCGGAGTGTAATTAGACTGAT
AAACCAGAAATTAATCACCATGTCTTGCAATTCATTTTGGTCATAACACCATGTATCATCATCCT
TCTTTAAAGCTAAAATTGGCTTCCTCCTTATTCCTTTTTTAATAGCAGCATGGTAGAATTTAGAA
TTGAAATCTCCATATTGCAGCCAATCAATTCGGCTCTTCTGTCGTAGCATTCTTTCTTCTTGAAA
GCAGACAAGATTATATTCTTCGATTAGTACAACTTCCAGGTTCAA



Found at i:298907 original size:17 final size:17

Alignment explanation


    Indices: 298885--298940  Score: 103
    Period size: 17  Copynumber: 3.3  Consensus size: 17

     298875 TTTGAAGATT

                             
     298885 TTAGAGATGCAGATTCA
          1 TTAGAGATGCAGATTCA

                             
     298902 TTAGAGATGCAGATTCA
          1 TTAGAGATGCAGATTCA

                             
     298919 TTAGAGATGCAGATTCA
          1 TTAGAGATGCAGATTCA

            *    
     298936 ATAGA
          1 TTAGA

     298941 ATATCGCGAG


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  17   38  1.00

ACGTcount: A:0.38, C:0.11, G:0.23, T:0.29


Consensus pattern (17 bp):   
TTAGAGATGCAGATTCA

Left flanking sequence: Indices 298385 -- 298884
AAAGACGCCAAAGACACCTCAAGGAATGATCCGATGAGTAATGAATGGCGGTCTACTAGCGCTGT
TACCACGTAGCCTTCATATGAGCTTGCGGGAATAGGTACTGTAGCTAAGTATGAAAAAGGCGATG
AAGCAGGCTAAAGGGCGAGCTAGGGTTCAAGTGATAGTTCACTTTCTACTTCAGGGGATATCTTC
CCACCCATCTCAATTCAGTTCTAGTGTGATGGAAGCTTTAGCAAGGACGGTAGGGAAAGCAATCA
AACAAACCCGATACTTTCAAGCCAAGGTTCCCGGAGAACGAATGGAGTAAAGCTTTGAGCATGAT
TGGTTGAGTCGCTTAAGGTAGTGCGCATTCATTTCTGAGCTTTGCATTACCGCCTCTTTTGCACT
CGCTTCCTCAATCAGGGTAAGGTAATTTGAGAAGCGGATGAAAGCATTCCGAAGTAGCCGGTTCA
AGGGCTAGAACATGAAGGCATTAGCGCATAGCTCATTTGAAGATT


Right flanking sequence: Indices 298941 -- 299440
ATATCGCGAGCATGCTTATCAGAAAGAGAGCAACTCTTATGCCCAAGAAAGACATGGGAGTTTTT
GTGCGTAAGCGTATAACCGCAGTTGGTAAATCTTCGACGAGGTTGGATCTCTCTCCTAACGTAAT
TAGTAAGAGGCTCGACGTAAGAGACGAAAGAAGTAGTTCGGAGAAGAAGTATAGACGGAAGAACC
TCTCGCTTCAAAGGCTTTATGCAAGAACCTTAGCGCGGAAAGTCGGAAAGTACACTTTTCGCTAG
TATTCAGAAAGTCATGGGGTTCATTGTTATTTTATTAAGCAAAGCACCCGTTAGTCGATACATTC
CTGACGTGAACTCTCGTTCCTATCCTTTCGATCATATACTCATTTTTCTATGTCAAAAAAGAAAT
GAGGAAGCATAGTAAATGAATTTGCTCTATGATATAAAAAGGATTTCATGGACTGAATGCTTTTC
TCCTAAAACTAAGACTTTTAACTCAGAGCTCTTTCAGACACTCGG



Found at i:301854 original size:18 final size:18

Alignment explanation


    Indices: 301823--301859  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     301813 CTGAAGAGAT

                 *   *        
     301823 TGATTTCTTTTCTTTTAG
          1 TGATTGCTTCTCTTTTAG

                              
     301841 TGATTGCTTCTCTTTTAG
          1 TGATTGCTTCTCTTTTAG

             
     301859 T
          1 T

     301860 CCGGTGAGAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.11, C:0.14, G:0.14, T:0.62


Consensus pattern (18 bp):   
TGATTGCTTCTCTTTTAG

Left flanking sequence: Indices 301323 -- 301822
GTGGTTATTGACCAACGGAAACGATAGGCTTTGAAGCGTGGACGTAAGAGGGAGATTACGTAGAC
ACGTGCTACAATCGCACAATGAAATCAAGAAAAGAAAAGACGAAGGAGTAGGCTAAGATCAGATC
GAGAGCTTCAATAGCAAAAGGGAGGCCCAGTTCCCACCGCAGAACGGCTGAACATCGCATCGAAG
GGAAGAGCTCTAATGGAGTCGGACAGCCTGGGCGGGCCAATAGTTCCACCGAGCCAAGTACCAAG
AAGAGGAGGTAGAGGAGCAAGAAGGTATCCCAATCCATCCTCCATAGAGTGCCATACACATGCTG
CAAGGAGAAAGCCTGTTGTTGGTCTTGAGGTTTCCGAAGTTTCATACTAGGATAGGACTCCTAAT
CCACTACTTACATAAGCAATAAATAGGGTTGGTTTTGAGGCTCCCATGACAGATAAGAATTCCCT
AGCAAGCAGTTCAAGCAAGTTTATAGACTTGATTGCTGAAGAGAT


Right flanking sequence: Indices 301860 -- 302359
CCGGTGAGAAGCAGATTAACAGTCATAGGGAAGAGGAAAAGACCCGTACTTAACTTTTCCCCAAG
AAGGAAGATGCTGAGATGAGGAGAGGAGTTTTGCTAGCTATCGAGTTTCAAGAAGATATTCTTCG
GCATTAGAGTTGGTATAAAGCTTTCCCTCCCTTTTTGCAGTACGGGAGCTGGCTACACTCGCGCG
AGAGAATGGAAAGGCGTAATGGGCAATGTGCTTCCTGTTGTTTGATGAGTAAGAGACGTTAGTCG
GAGTCTTATCACCCCGAGGTTGAAAAGCGTGATTAGAACGATGAATCTGATTCGCAAACTAACTC
CAAGTGAATTGGCTAAGCTGCTTTATCGAATCTCGGAATCTACATTTACTGCGAAATAAGCTCTG
ACATTTAAGTAGCTTTCCTTTCGTGTCCGGTCCGATTCAATGAACTGCGAGTCAGAAGAGCGATA
TCCTTTCTAGACCCGCGGATTTCCTTATTTCCGAAAGCGATTTCC



Found at i:302851 original size:18 final size:17

Alignment explanation


    Indices: 302828--302862  Score: 52
    Period size: 18  Copynumber: 2.0  Consensus size: 17

     302818 CCCTCCCGAC

                              
     302828 CTTTAGCTCATATGCTTT
          1 CTTTAGCTCATA-GCTTT

                  *          
     302846 CTTTAGGTCATAGCTTT
          1 CTTTAGCTCATAGCTTT

     302863 ACTCCAATTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    5  0.31
  18   11  0.69

ACGTcount: A:0.17, C:0.20, G:0.14, T:0.49


Consensus pattern (17 bp):   
CTTTAGCTCATAGCTTT

Left flanking sequence: Indices 302328 -- 302827
CGCGGATTTCCTTATTTCCGAAAGCGATTTCCCTTTATATTTTATTAGTCGATTTACTTACTTTA
TTTAACCTTCTGGTAAACTCCGTAGAGGGGATTCACGGATAACTTCGTAGGGTGGAGCTTAAGCC
TACCCTAGGAATAGTAGGAGTTGCAGAAGTCTCTATTGCTGCCTCAGAAGCAGTAGTAGTACAAT
ACTTTCACTTTTGAGTTGCAGTTCTTTTCGTCTTCTTTCTCTTTCTGTAGCAGCCGGTTCTAGCA
AGTTCATAGATTCAGGTTGAGATTCCTTCTCAAGTTGATGGAATAGAGAGTAAGCCTTCCACAGC
TATAACAACAGCAAAAGTCAGGTGCTTAGTCCGAGTATCCGTTCCGAGACCAGTATCCGCTTTCC
CTGTAGAGTTCTATTAAAATTGGCCCTCAAACGACTTAAAGGGATTCAGCTTACGGGTTTTACTC
AAGAGCGGCGAAAGCGAGTTGCATAAGTTCTTGCCCCCTCCCGAC


Right flanking sequence: Indices 302863 -- 303362
ACTCCAATTCTTCTATCTAAAGTTCCTAAACTATCTTTACGAATCTCTACTATCTTTCCAAACAA
AACAAAAATCAATACTTTAATCAAGAACCTGTAAAGAAGACCGATAGGGGAAGGGCAGTAGCAGA
GCGACCCTAGCTGGAACAGCAAACCCATGAGAAAAAAGGAAGGCAAGACCTAGACACCAACAAGC
CTTCCTTCAATAGGGACTTTCTAACTGGTCTTTTCAGGTCTTTCTCGAGCTAAGGAAAGACGTGT
TCTCAAGACAATAGGTATTTCGACCCACAACCTTCTTTCCAAGACCAATCCCTTGATCTATCTCT
CATCTTTAAATACTCTATACTCTAATTTAAATACTATAACTGTCTCGTCTTATAATACCTCAGGG
GCTAATGAAACTATTTTAGTGAATTTTAACTGTCTCAATTCCCGGGCGATCGCACCAAAAATCCG
AGTTCCTTTTGGATTTCCTTGTTGATCAATGACAACTGCAGCATT



Found at i:306430 original size:21 final size:21

Alignment explanation


    Indices: 306404--306446  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     306394 TACCCAAGAG

                                 
     306404 TTAAATACCCAATCAAATCAA
          1 TTAAATACCCAATCAAATCAA

                                 
     306425 TTAAATACCCAATCAAATCAA
          1 TTAAATACCCAATCAAATCAA

             
     306446 T
          1 T

     306447 AGACGGGCGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26


Consensus pattern (21 bp):   
TTAAATACCCAATCAAATCAA

Left flanking sequence: Indices 305904 -- 306403
TTTCAGGTTTCCGTAAGGGCTTAACTTCTTAGCTTTTCCTCAGAGTAATAAGATCGGCTAAGCTG
AATGGCATTTTCAGCCTATTCTATTAATGTAAGATATTCCCGATCAAAAACATCAATTTGATCCC
CTGCCCTGAAAAGCAAATAAAAAGCTTAGAATTAGAAGGTCAGAGTCTTCGTTAGCCGTGTACTT
TGTTATCCTATTATGTATCTTTATCTCCCGGTTCTTCCCTTACCGAACTACCAGCTTCCTTCGTG
CCATACTCCTTCGTCTTCTGTATCGGCTTATTCGTCTTCGCCCGTAACATCTACCCTAGCTAATG
CCTGCTTCTGGTTTTTTATAGTTTTCTGACTTTATTTCCGCTACGCGGTGCAAGGGGGTTAAAAT
AGTGGATTTGACCTCCTATCGAATGTGATCTGCTTGAACCCGTCCTTACTCTATCAATTAAGGAA
TAGATATAGTAATGGATAATACAGTTGAAGAGAAATACCCAAGAG


Right flanking sequence: Indices 306447 -- 306946
AGACGGGCGATGCAAGTTGATGGAAGAGGAAGAGCACATCCACTATTTAGAGCGCATCTTCCCAG
CCCATGCACCAAGAATAATCGTTCAATGTTCGGTATTTTCCCGTTTAACGTTTTCCCTTCTTTGT
TTTTCGCATATTTCAATTGTATCGGGATCTCACAAAACCTGATCCTAATATTTAGTCCTTTCGAG
AAATAAATATCTTACTTAATAAAAGAATGCTCTTTACCTTGTACCATATTCGGTCACTATTTGAC
GATGAGATTTTGGACACCGGATTTCAATCCTAGCGCTTCCACCATAGATTCTACTGCGGTTTGGG
TAAGGTTCCCAGGATTACAGATAGAGTATTATCACCATAGGATTCTTATGGCTCTAGGGAACACA
GTTGGAAAGGCAATTAAGGTGGATGCAAATACAAGGCTTGCTTCTAGGGGTAAGTTTGCTAGAGT
TTGTGTGCAAGTTGATCTCAGTAAGCCGCTTGTACTGAAGGTTTT



Found at i:307010 original size:14 final size:14

Alignment explanation


    Indices: 306991--307019  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

     306981 GGTCTCAATC

                          
     306991 TAATTTGCTTTCGG
          1 TAATTTGCTTTCGG

                          
     307005 TAATTTGCTTTCGG
          1 TAATTTGCTTTCGG

             
     307019 T
          1 T

     307020 GTGGTCGTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.14, C:0.14, G:0.21, T:0.52


Consensus pattern (14 bp):   
TAATTTGCTTTCGG

Left flanking sequence: Indices 306491 -- 306990
ATTTAGAGCGCATCTTCCCAGCCCATGCACCAAGAATAATCGTTCAATGTTCGGTATTTTCCCGT
TTAACGTTTTCCCTTCTTTGTTTTTCGCATATTTCAATTGTATCGGGATCTCACAAAACCTGATC
CTAATATTTAGTCCTTTCGAGAAATAAATATCTTACTTAATAAAAGAATGCTCTTTACCTTGTAC
CATATTCGGTCACTATTTGACGATGAGATTTTGGACACCGGATTTCAATCCTAGCGCTTCCACCA
TAGATTCTACTGCGGTTTGGGTAAGGTTCCCAGGATTACAGATAGAGTATTATCACCATAGGATT
CTTATGGCTCTAGGGAACACAGTTGGAAAGGCAATTAAGGTGGATGCAAATACAAGGCTTGCTTC
TAGGGGTAAGTTTGCTAGAGTTTGTGTGCAAGTTGATCTCAGTAAGCCGCTTGTACTGAAGGTTT
TCTTTGAAGGTCGGTGGTTACAAGTAGAGTATGAAGGTCTCAATC


Right flanking sequence: Indices 307020 -- 307519
GTGGTCGTTCAGGACACAAAGGACACTGCCCTTACTTTCCCTCTGAGGAGGATTTAGGTGAACGT
GAGGAACCTGCTGTCGCTGATGAGCAGGCTGAACGGAGAAAACAGATGGAGGCTGAGCAGAGGCG
GCATATGGAGGCAATAGCCAAAGATTATGGTCCATGGATGATTGCGCAATCACGGAATAATCGGA
GAGGAAGGAAATCAATTCCCAAAAATCAAGGAAAAAAATCTAGTTAATTAGAATTTGCAGGGATC
ACGTTTTGCGGCTCTTGCCAATATGGAGAATCCAGAGGAGGAAGGGCAGAAGGATTTCCAGGAAG
TTTCGCGGGAACGAGAAAGGGATGTAACTTCTTGGGCTCAAGGGGCCCGTCAGTCAATGGGCAGT
ATGGGCCGTAATGGGCAGAGAGCAGATAATAAGTCTTTGAGTCAGAATAGGCCTGCCAAAGTGGT
ACAAAAAAATAATGGTGAAACTTCTTACAGGTCGGGACCTAATTC



Found at i:307585 original size:25 final size:25

Alignment explanation


    Indices: 307551--307600  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

     307541 TACTAACAGA

                                     
     307551 GAGTCTTCGAAAGTAATGGTGCAGC
          1 GAGTCTTCGAAAGTAATGGTGCAGC

                                     
     307576 GAGTCTTCGAAAGTAATGGTGCAGC
          1 GAGTCTTCGAAAGTAATGGTGCAGC

     307601 TTCTACTAGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24


Consensus pattern (25 bp):   
GAGTCTTCGAAAGTAATGGTGCAGC

Left flanking sequence: Indices 307051 -- 307550
TTACTTTCCCTCTGAGGAGGATTTAGGTGAACGTGAGGAACCTGCTGTCGCTGATGAGCAGGCTG
AACGGAGAAAACAGATGGAGGCTGAGCAGAGGCGGCATATGGAGGCAATAGCCAAAGATTATGGT
CCATGGATGATTGCGCAATCACGGAATAATCGGAGAGGAAGGAAATCAATTCCCAAAAATCAAGG
AAAAAAATCTAGTTAATTAGAATTTGCAGGGATCACGTTTTGCGGCTCTTGCCAATATGGAGAAT
CCAGAGGAGGAAGGGCAGAAGGATTTCCAGGAAGTTTCGCGGGAACGAGAAAGGGATGTAACTTC
TTGGGCTCAAGGGGCCCGTCAGTCAATGGGCAGTATGGGCCGTAATGGGCAGAGAGCAGATAATA
AGTCTTTGAGTCAGAATAGGCCTGCCAAAGTGGTACAAAAAAATAATGGTGAAACTTCTTACAGG
TCGGGACCTAATTCTGGGTCTGGTGGTGGTATTCGTACTAACAGA


Right flanking sequence: Indices 307601 -- 308100
TTCTACTAGTCCTTGAGATTGTTTAGGTCTTAACGAGCCTTCCTTTTATTCATCTGGTTAAGCTT
TCCTTTCTAGATTTGCGACTAGGAAGACAACCTAATCGACTTCATTGACGAACCCGAAGGAAGAA
AGAGTAGGACGAATACCGCAGAACCCATGGGCGAAGTGGCTGAAGCAGACTCACAATGAACTCTT
ACTTGGTCAACAACTAAACCCGAAAACAAAACCCAAGGTTCAGAAAGGAGCCAGCTTCTTGAATT
CCTCTTTATACGTCAATTTTTTATTAAATAGCTCAAACTGCTTATTTCTTTCTGTCTTTCGACGG
GTGAAGAGACAGGGATTAGTTTTATCGGGGATAAGCCCCTTACCCTACCTTTAGCGAATAGGAAG
GATAGCAAGAGGTCTTGCAGAGCCTATACCTATCATCGGAAATTGATTCACTACCGGGCTGACCC
AAGTCCCAAGAAGCACGAAGACTCTTAGTAAGGAGCCCGCCTCCT



Found at i:311048 original size:13 final size:14

Alignment explanation


    Indices: 311020--311048  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

     311010 GGGAATGATG

                          
     311020 AATAGCTTTCCTTC
          1 AATAGCTTTCCTTC

                          
     311034 AATAGCTTT-CTTC
          1 AATAGCTTTCCTTC

              
     311047 AA
          1 AA

     311049 GAATCAATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41


Consensus pattern (14 bp):   
AATAGCTTTCCTTC

Left flanking sequence: Indices 310520 -- 311019
GACCTTCCTTAGGCCGTCAGTTCGAAAAGCGCAGCATCTATTGGTACTTAATTACAGAGAGCTAT
TCGGACTTCCGTCATGTTCTTGCCCTAATAGTTGCGATATCCCAACTAGTCAAAGTCTCCCTAAC
TTGAACTTCGATCCGTTACAGATCCAGCCCCATAATAAGGCTATATCTCTTTCGATTATGCTAGG
GGCAGTCTTGCTAAGTCTAGCACTCTCAGAAAGCATTTCTGGTTCGTTAGTTAGTTAGACTAAGG
GCAAGTTCCACTGCCTAATTCATTGGCCATGGAAGAGTTTCTGCCTATTTGGAACGAACGACTGA
CTATCGGGCATAGGCAAGAGGGTCACCTAATGGCTGTTGTAAGCTCGCAGCTCAGTTCTTTCTTC
CTTAGCTAGCTTGAGAGCATGTACCTTTAGTAAAGAGTTAGGAGTAGGAGTTAGCCTTGAACAGC
TAAAAACCAGATTTAAGTGATTCATCTGATGACTTGGGAATGATG


Right flanking sequence: Indices 311049 -- 311548
GAATCAATTGCTTTCATCCCCTTGGGAAACCTCAACCGAAACCTCAAAACCAAATAAATAACAGG
CTTGAAGCTTTAACAGAGCCGAGAGCCCAAGCCAATTCTAGCCGCTCTAATTGGTATGTACCTTT
TGTTTAGGGTTTCGAATCCTAGCCGTCTTTATTGATTATTGCTTCCTGACCGTCTTTATTCTGTA
TTGAATGCTAGCTTTTCTAGCCGCTCATTAGCTTGCGTGGAGTGATTGGATTTTGGAGTGTGTGC
GTACCCTTTCTTATTGTTTGTTCATAAATGGTAAGTCCAGTAGAAGTATTCATCTCGGTTCAGTA
GTAGCTAGACCGTCACTTGCAGAATTTGTCCCTATTACCCCTTCCTCTCTAGCTGTTTTCTATGG
GGCTGTATTCCAAATCCAATACTGAATCCCTTTATCTGCCCGCTGGTAATGGCGAGGGCTGTCTA
GCATTGTAGTACTGATTGATACCCCGCTGAACCGATAGATAGGCT



Found at i:314047 original size:19 final size:19

Alignment explanation


    Indices: 314023--314063  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

     314013 ATTAAACAAC

                               
     314023 TTTAGCCGAATAGTCCGTT
          1 TTTAGCCGAATAGTCCGTT

                               
     314042 TTTAGCCGAATAGTCCGTT
          1 TTTAGCCGAATAGTCCGTT

               
     314061 TTT
          1 TTT

     314064 CTAGTTTGAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41


Consensus pattern (19 bp):   
TTTAGCCGAATAGTCCGTT

Left flanking sequence: Indices 313523 -- 314022
CTATAGCCTAGCCCTTATTAGTATTAGACTGGAGACTTGCTAAGACTATACATCATATTCAGTTA
CAGATACAGCAGGATAGGAGACGGGGATTGGCTCTATTCTATAGGAGGGAGAAGGAAAGCTACTT
GATGGAACTCCAACAATAGGCTCGGCAGGATCGAATGTAAACTAGCACTCTAATCTAGCTGGTGG
GGAACGAGATGCCCCTACCGATGGCAAGAAAGAGGCCTTGCCTGAAGTTGTGCTGGCTGATATAG
CGTATAAGGAAAGGAACCCTCACTGGTGTACGCCCGTAAAAAATCCCAAGTAGGCCCAATGAGAA
GAAACCCCCCCGCCTACTCTCTTCTCATTTATTAAGCGAAAAAAACTACATGAACAGGGGCCTAC
CGTTCATAGGTAGCATAGCATACTCATCGAAGTAACTCTTCTCATTCTATTGATTACCGCGCTAA
CCAAACCCCGGGCAAAACAATAAACAACGGAAAAGATTAAACAAC


Right flanking sequence: Indices 314064 -- 314563
CTAGTTTGAGTTACCGGACTTGGGTACTCTCATTAGATACCTCAGTCTATCCCAGATAACGTTTA
GAAAGATGCTATCCCATGGAAGAAAGCCGTATTCTCCCTAACATCAGACAAGATGAGGACTTTCT
ATAGGTTTTCAGGTAATTCATGCACTAGTTCGCTATATTCTTTGTTGTATGAAACCTGGGTTTTG
TTAAGGACTGTTCTCTTATTGAAACTTGAGATAAAACCAGAAGCGAAATCCTTTATTGATTAGGG
CGAGCCGACCACCCTTAACCTATAGGGATAGGGGCGATAAGGCAGTTTCATGCCCGGTGGCTGCT
GCCGAATCTGCTATTGCTGTAGACATTGAAGGTTATGACTCTTGCTACCTTCTGGAAACCCCACT
ATAGTAGAAAGTAATGCGAGCCCTTATTATTTTATTTATAGTCGACCCACTATATATAAGCTCTT
CGACCTGAACGAACTAATAGCCAGAGACTAGATTATTAGGGCTAG



Found at i:316632 original size:21 final size:21

Alignment explanation


    Indices: 316606--316647  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     316596 AAATGCACTT

                                 
     316606 CCAGCAAAGGTATTGATTTCA
          1 CCAGCAAAGGTATTGATTTCA

                                 
     316627 CCAGCAAAGGTATTGATTTCA
          1 CCAGCAAAGGTATTGATTTCA

     316648 ATGGACTCAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Consensus pattern (21 bp):   
CCAGCAAAGGTATTGATTTCA

Left flanking sequence: Indices 316106 -- 316605
TCTACAATGGTATCAGCTCAATCGCCTATCGGCGCCTTTTCCCGGGCTTTACACCGCAGCAGGGG
CTACGGCAAGGCTCGGAAAGACCATATCTCTTTATCTTGGTAATGGTGAGTCTATCAAAAGGAGC
CTCCTCATTTGAAATGTCATGAATCAGAGGATAAGAAGGAATCGTAAGTCCAAGCTGAATCCCCT
TGGCTCCACTCGCGCTAGAGTCGTGAACCGGTAACCGAAAAGAATCATTTCCCGAGCTGCTTTCA
ATTTAACAGCACCTTTATCTAATAAACCCCAGCCTGGACGGAAAACTGGTTTAATAAAGAGCTTG
AGAGGAAGGGAAGGCTGGTAAGGTCCTTGGTCTGGTCTTCCTTCCTTCTGCTTTGTCTATTCCGC
TCTCGAGGATAGGGATTGGCTACGGATGAGGGAAAGCTTCTTCTTTTTCTCGTCCTCTGATAAGC
GTCATTGAGATCTGTAGTTATTGGTATCCCCCAACAAATGCACTT


Right flanking sequence: Indices 316648 -- 317147
ATGGACTCACGTTCAAAAAAGACGGGAAAACTTAAAGTTTGAAGATTTGGAAAAAAATTAAGAGA
ATAGGTTGGTTTGGGAGCGTTGGAAGCTTCAATCGCTTCTCTTACGTCTTTCTCAGCTCGACTTT
CTCTTGCAGAAGGAGAGGAGATTGATCAGAAGATGAAAGGGCTCGCCATCAACGCAGTGACTGAG
GAGATACCCGAGTCTCACCCATGGGTCTACCCAATGGCCCCAGGAGAAGAGTTGGACAACTGGGA
GGCTTATGATTGCGCTGTCTTAATGTCTGATCTGGAAATGTAATGAATTTGTCTTAATGGTTGTT
TCAAGAACATTTAGGGTTGTTTTAAATTCAATTAAAGACTGATCTTATGCTTGTTTAACTCAAAC
TATCCACATGTTATATTTTTTATTACAAGTAATGAAATACAATGCATATTTACAATCCATATTCG
GTGCTACATTCTCTCTTTCTTTCTTTCTCTTATCATTTATCTCAC



Found at i:322399 original size:15 final size:15

Alignment explanation


    Indices: 322379--322408  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     322369 TACAGAATTC

                           
     322379 ATGGTCAATGCATCA
          1 ATGGTCAATGCATCA

                           
     322394 ATGGTCAATGCATCA
          1 ATGGTCAATGCATCA

     322409 CCGGCAAAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27


Consensus pattern (15 bp):   
ATGGTCAATGCATCA

Left flanking sequence: Indices 321879 -- 322378
TTTCATTTGTTGCAGTGCAGGTCAACCATTGGGTTATCACCCTTCCTGGCCCATCTACTGGCTTT
ATTTAGGGCTACTCTTGTGTTGGATACCGAGACGGCTGAGTCTTTCGCGCCATCAAGAGTCGTGT
GAGCCTGGGAGATCTTGTAGGCACTTGACTCGAAGATAGTCTCTTTTGGTGCTGCAGCGGTGGCT
GCCTTTGATTGCTTTTACACTTGACTTCCTTATTTGGCCTGGCTTGTACGATGTTAACGTCTGCA
GAGCTCTTCTTGCTTCTACTTTGCATTGTCTGCGCCTCAAAGTCCTTGAAAGAATCTCACCTTTC
CGACCCTATTAGAGAGCGTCCTTCATGCCTAAACTCCTTGAACCTGAGGGGCTAGGTGTGTTGAT
GGGCCTACCGCCTAATTTGAAAGAAAGAGATTGAGGTAAATACGAATCAGCAACGGAATCAGAGG
CTTAAGAGGAGCCAGAAAGACGAGATGTTGAACGTTACAGAATTC


Right flanking sequence: Indices 322409 -- 322908
CCGGCAAAGAAAGTCCGAACTACGAATGCTATGGGTAAGATTTGTCCGTGAGTTCAAGAGATTCG
GATCAAAGGTTATCGCAAGGGGTAATCAAACCTTTTTTCCACGGGTTCAGCTAGCCCATGCAGTC
TAAGGGATGAAATAGCTCGACCATAGGGAACGAGTTACATACTTGGAACGAGGTTTGTATGAGAA
TTGAACAGGAGATAAGGGAAAGCCTAACGACCTGCCTGCCCTATCCGCGCGGTCAAAAAGCGTCG
AATCAAAGAGAGATGGGATATCAGACTCTTGTTCATCTCTTTCTCCCCAAGCCAATATAGAGTCT
AACGGGAGAACTCCAAGCTTTCTAGCAGCCATATTGCAGCTTGAGGGTTTGTGCTTTGCATCGAT
TGAGTACTTGTAGCGAATGAGCCAATCAGCAGCTTTCGTGGTTGATGTTTCGAGCTAAATTTCAA
TATTCGCAGTTCCGGGTCCTTTGGTCTTTTGAGGATCCCTACCCG



Found at i:324483 original size:23 final size:23

Alignment explanation


    Indices: 324456--324501  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     324446 GGCTACAGCA

                                   
     324456 ATAGGTCTTAGCCCGTCTTTTCG
          1 ATAGGTCTTAGCCCGTCTTTTCG

                                   
     324479 ATAGGTCTTAGCCCGTCTTTTCG
          1 ATAGGTCTTAGCCCGTCTTTTCG

     324502 GTTGTTTAGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.13, C:0.26, G:0.22, T:0.39


Consensus pattern (23 bp):   
ATAGGTCTTAGCCCGTCTTTTCG

Left flanking sequence: Indices 323956 -- 324455
TTATTGGTTACTGAGTAGGCTGTGCTGATTGATGGGATAACTTTCTAGATGCAGGTAGCTTGCTC
TGGAGTTGCTTACTATAGGACATGCTCAATCAAATTGGGTTGGTGGATTCTTTGATGCTGATGGT
ACCATTGGTATCGCTATGAAGAAACTCCCATCTGACTACTCTGCTTCTCGTTGATTAACGTAGTC
AAGGTTTAGAAAATTAGATCATTCTTAGGTTTGATTTTAGAGAGTTCTCGGTTCCATCCATGGAT
CAGTTTTCGTAGTTTCTTTATTCGCTCGTTCCATTAATTCTACAGAAGAGAGAGATCCTGAAACA
AACATAAGGAAAAACTGGCTTTCAACAGCTTGAGCTTGAGATTCCCCATCAAAAGCAATAAACGA
CGACAGATTACCTGTTGCAACTTTAGCCTCTGAGTCGGGTTTCCTGTTTTTGCTAAACCCTTCAA
CCAAGGATGTAAAGGCTCTACAAGACCACATGCCCGGCTACAGCA


Right flanking sequence: Indices 324502 -- 325001
GTTGTTTAGGGACTGGTATTATCTCAAGCTCTTTTAGCCTGTTCTCTTGTTTTTGGTCATGCGTA
TGGCGAACGACTGAGCAATGCTTCCTTACCGAAACCCTTCTTGGGCTCTAACAAGACCTCTACTA
TCCGCATACCACAATCAAGAAAGCCCCGTAGTATTACTCAAGTCCGGACTTGGGTAAGAAAGGCT
AAGGCTTTCTGCTTCTGTCCCTACCTACCTCTCTAGCTCGAAAAGGATATCTCTTCCTTCCCATT
ATCTTGGATGAAGGGAGGGGGATTAAGCTATTAAGCCCGATCGATTAACTAAGCAGGGAAAGTCC
GATTGAAAGCCTGTTTTTGGCCTTGTATCCATCGTGGGGTTTGAAGAGCTATCTCAACCATTCAC
TTATTGCGAGTTGTTACCTCCGCTCTCAAAGCAAAGGTACCTGGGCAAGCAAAAGAAAAAGTGTT
GAGGTAGGGCGTGGGTAGGTAGTGTGCGATAGGTATTTCAAATAA



Found at i:328680 original size:26 final size:22

Alignment explanation


    Indices: 328634--328677  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     328624 TCTGCACTTG

                                  
     328634 ATCTTGAAAGAGTAGGTTCTTT
          1 ATCTTGAAAGAGTAGGTTCTTT

                                  
     328656 ATCTTGAAAGAGTAGGTTCTTT
          1 ATCTTGAAAGAGTAGGTTCTTT

     328678 CTTGGACTTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41


Consensus pattern (22 bp):   
ATCTTGAAAGAGTAGGTTCTTT

Left flanking sequence: Indices 328134 -- 328633
GAGCTAGGGTTTTAATATGTAAAAAGGCATAAAAGCAGAGCTAGCTTCAGCATCAGTTGATATGT
TGGTGTCAAGTCAACGTGAGACACCTGCCGCACATTCCGATAGGCGAATGCGGGGATGGAACAAA
TGGCTGTTATGCCATTCTATAGATAAGAGGGTTTACTAATTTATGTCGGGGTACAGGATGAAATG
AACGATCCGATATCTCAATACTCATAAATAAATACGGCGACAAGGGATCCCCCTTTACAAGCGGC
ATTGCCTCTTGGTTGTAGTGTAATTTTTCCAACCTTTTCACAAGTCCGCCCAAAAAAGTTCTTTA
AAGTTGCAGTGTGGTTGTACATATGAACAAGAAAGAATCTTCCCTCTGATAATTAGATGTACCGG
GGTTATGATTTGGTGATTAAGGGCGATCCCAATGTCTCTTAAAAGATGGGTAATCCATGTCAATT
CGGCTGTAGCAGAGGCCATTGAGCGGTATTCAGCTTCTGCACTTG


Right flanking sequence: Indices 328678 -- 329177
CTTGGACTTCCAAGAGATGGGAGCACTACCAAGTAAAATGAAATAAGCAGTGGTGTAGGTGGATC
GACGAGTCGTGGGACATCGACCCCAATCTGCATCACAATAGTCCTCAAGACTTAAGGTCCCCGTT
GCTGGCAAAAGAATACCCTGTCCTGGAGCCTTTTGAAAGTACCGCAAAACTCGCATGTCTGCTTC
CAAGTGCTCTTGTCGTGGACTACTAACAAATTGACTGAGAACATTGACTGCATAGGCTATGTCTG
GTCTAGTGACTGTAAGATAGAGTAGACGCCCAATTAAGGGTCTATATTGTCCAGCATCTATCAAG
GACCCATCACCATTTGCTTGCAATTTGAGATTTTTCTCCATCGGAAAATAGCTAGGACGACACCC
CTGCATCCCACTTTCTTCCAATATATCTAGTGCATACTTTCGCAGGCTAAGAACCAATCCTTCTG
TGGATCTTGCAGCTTCTATGCCTAGAAAATATTTCAATGTCCCTA



Found at i:334251 original size:17 final size:17

Alignment explanation


    Indices: 334229--334263  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

     334219 TCCTATCTTT

                             
     334229 AAGAAAAAGAAGACATA
          1 AAGAAAAAGAAGACATA

                             
     334246 AAGAAAAAGAAGACATA
          1 AAGAAAAAGAAGACATA

             
     334263 A
          1 A

     334264 TTTGTTGAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.71, C:0.06, G:0.17, T:0.06


Consensus pattern (17 bp):   
AAGAAAAAGAAGACATA

Left flanking sequence: Indices 333729 -- 334228
TCGAGCCTCTCCTACCCTTTGGATTCCAATAATCTTCGAAGGTGATTTGGCTCATATTGCTGCTT
GCCATCTCAAGGAAAATGATCATGTCTATATAGATGGGCAACTAACTGATGATCCACCTTCTGAA
ACCAATGGTCAAGCCAATGTCCAAGTTATTGTGCGTACTGTCAACTTTGTTGATGAATCTCCCAA
GAAGACAAGCATTGCTTCCGGTAAACAAGAAGGGACATTAAGTCATTTTTCTGCTACTGAGAAAG
GTACTGTAACTGCATGGGATCTAATTATTTCCAAGTCCAAGGAAGTGGTTTGATCTAAGACTTAT
TTTTTCACGTACAACTGAATTTTTACTGCTCGTGCCGTACTCACAGTCAGGCAGGCTTATACCAT
TACGCCCTTTGGTAATTTCCAAAAAACTAAAGAAAGGTAAAGGTAGGCCAGGCCGATGCAGAGTA
CATTTCAAGCCAACTCAAAAGTTCAACCATAAGGTTCCTATCTTT


Right flanking sequence: Indices 334264 -- 334763
TTTGTTGAAGAGGGCCGGGCCGAAGGGCCAATCAAGACAATCAATGAACTCAAAAGAGAATCCTT
ATAGAATAAATGATATATAAGAAATTCATAGACTAGGGCCCGATAAGGGTCTGCTAAGAGTTAGG
CGAAGTTGGTAGTTACAAATCCACATCTTCTACAGTGAAAGATCCAGGGAAGCTCTATTTGACTC
AGCAAGGCATAGAAGGCACTAAAGCAAGTCAAGTCACGGAAAGAATCGAAATCTCATAGAGAAGA
AAAGAACCGCACACATCAAGCACCCTAATAGGAACTAATTCAACCCTATATGCATCAAGATTATC
GTATAGAAGTAGTGAATAGAATGCAAACCAGACTGACAACAGCAAGCTAAGCTGCTAGTTAGGCT
GCAAGGATTTCACTGCTTGAGAGTCAGATTCATAGTAACAATATCCCCTCGCCTTACTATTGCAC
TATTGCACCGACTTCGTCCTCAAAGACTGCCTGCTCAATGCCACT



Found at i:336231 original size:30 final size:30

Alignment explanation


    Indices: 336195--336254  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

     336185 GCATCATAAA

                                          
     336195 TGTAAACGGACTGAAATGATGTGATAGTGG
          1 TGTAAACGGACTGAAATGATGTGATAGTGG

                                          
     336225 TGTAAACGGACTGAAATGATGTGATAGTGG
          1 TGTAAACGGACTGAAATGATGTGATAGTGG

     336255 AGCTGGATGG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.33, C:0.07, G:0.33, T:0.27


Consensus pattern (30 bp):   
TGTAAACGGACTGAAATGATGTGATAGTGG

Left flanking sequence: Indices 335695 -- 336194
CGAAGGAGGTTTAGAGAAATTCCAGGCTCAAGAGTCACTGCCCCTTTTCCTATTGATAACCTTTC
ACCAGCTTTCCGACGAGCTAAAGTACGGATAATGCTCTACTGTCTAGTCCAGCTAAAGCGCTAAG
GTTCTTGCGGCTAATACTTTGTATAGTTACTCGCCTCTGCTCTGAGATCATTCATCTAGGTTCAC
AGGGGAGGCTTAAGAGAGATGAGATTCTATTCTTCGGTAAGGTCGTACCAGGGAAGTTGTTACGA
AAGGAGTTAGTCCAGCTTTCCAGTTACTCATCCATATTAGTACCGGGCTGACCCAATCCCATTCT
AAGCAAGGCACAGAGGAGGGAGATCCAAGCCCTACTGCTAAGTAGTTTGCTAGCTAGCCGCTTTC
ACTTCCAGACCCATCAACAACATAAACAGTTTCTGCTTGATCAACGGGAAGGGCATTTGAGTAGT
ATAGAATAGGAGAAGGACGGGATGATTTACAAAGTGCATCATAAA


Right flanking sequence: Indices 336255 -- 336754
AGCTGGATGGGAAGAACTAAATAGTACTGCTAGATTATTCCCGATCAAAAACATCAATTTCATCC
ACGTAAAATGTCTAACTATCCTCGAATAGGACGACCAATAGACAAAGCAACCGTAAGAAATCCCC
TTAACTCGATTGAGAGCGTAGAACATGATCCGTAAGTCGAATAGGGCGATCAAGGGCTTGTAAAA
GGTGCAGAGGAAAGCACGATTCATGCTATGCGAGCATAACCCGAAGTAAAGACCTGTTTGCACCC
GATGACGTATTTTTAGGTGACTGGGCTTTTGTTAATCTGATCAAGTTTCTGGCAGGCATGTCGAT
GCAAGAAGAAATTCTAATCTTCTTGTTAGAGTTATATCTCCTCGTTCTTTCCCTTACGCCCACAG
TGCTCTTACGATGGCAGGTCACCGGGAGTGAAGTCCACTCGGCTCCTGATGTAGCATTCATTCGG
ACCATTCGACCCTTCTGGATACCGATGGCTCTGTGAGAGGGCAAA



Found at i:341027 original size:14 final size:16

Alignment explanation


    Indices: 341002--341036  Score: 56
    Period size: 14  Copynumber: 2.3  Consensus size: 16

     340992 AATACTAATC

                            
     341002 TAATACTAATAGAAAA
          1 TAATACTAATAGAAAA

                            
     341018 -AATA-TAATAGAAAA
          1 TAATACTAATAGAAAA

                 
     341032 TAATA
          1 TAATA

     341037 ATATAATAGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  14   10  0.56
  15    8  0.44

ACGTcount: A:0.66, C:0.03, G:0.06, T:0.26


Consensus pattern (16 bp):   
TAATACTAATAGAAAA

Left flanking sequence: Indices 340502 -- 341001
GGCTTGTTGAGGTTATACATATTTGCCGAGAAGGAAATCGCTGTGCGGATGGTCTCGCGGATTTG
GCTCATTCTTTGCCCCAGGGAGCTAGCTATTATGAAGACCCACCGGATCATCCTATTCAACCTCT
CCTTGAGGAGGATAGGGAGGGTATTGGCGTGCTGCGAATTTAGCACTTATTTTCTTTCTTTTCTT
AGGAACACATACAAGATTCGTCACTACAAAAAGGATAATGGTAACCCCACCCCACGATTAATTAC
TTCATTTATGAATGATTCATTCGGATCGGCATGAAAGCCCAACTACATTGCATTGCCAGAATCCA
TCTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCATGGTACAATCCTCTTCCCGCTGAG
CCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTAGGACTGGCGCCAATAGCTAATCAC
GGAAGAAAGGACTCACTGAGCCGGGATCACTAACTAATACTAATC


Right flanking sequence: Indices 341037 -- 341536
ATATAATAGAAAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACTGCGGGC
TTTACGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCGTCGAAAGGATCTC
GGAGACTCACCAAAGCACGAAAACCAGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCAT
AACCGCATGGATAAGCTCACACTAACCCGTCAATTTGGGATACAATTCGGGATTTTCCTTGGGGG
GTATCAGTAAGGAATTGGAATGTAATAATATCGATTCATATAGATAGAGAGGAAAAGGAAAAGGT
TCTCTATTGATTCAAATGCTGTACCTATGGGATAGAGAAAGAGGAAAAAACCGAAGATTTCACAC
AGTGCTTTTGATCGAAAAACCAATCTCCTATAAGACTTAAGGAATGATGGAAGGGAATAAAAAAA
GAAAATAGAAAATAAATAACCCCTTTGAAGTGGCGAAGGCCCATG



Found at i:344154 original size:20 final size:20

Alignment explanation


    Indices: 344107--344146  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     344097 TTAATACAAT

                                
     344107 ATGGTTGATTCAATAGCAAA
          1 ATGGTTGATTCAATAGCAAA

                                
     344127 ATGGTTGATTCAATAGCAAA
          1 ATGGTTGATTCAATAGCAAA

     344147 GGCTTTGACG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30


Consensus pattern (20 bp):   
ATGGTTGATTCAATAGCAAA

Left flanking sequence: Indices 343607 -- 344106
ACTTCACTACGTTTTTTATAGGTTCCATTAGCCTTTTGAACGTGGATCTGGGAGTCTAAATTAAT
TGATTTCATCCAAACCTTGTCAACTCTCTACTTCTTCTCCAGCATGGGCTCTTCCCTTTGTATAT
GGGTTAGGGAGCATGCTTTCATTCTATCAAGTTTGGACCGAGCATGTCGGTGATGTCGATTTCAA
TGTAATTTTTAGAGTCTGATTATGTGTTGCCAGCCCTTGCTGACTGTCTTGGTCTTGTCCAGCTA
AAGTAAGGAAGGAGAATGCGTCAACATTTTCATCGATGATAATAATAGCCAATTGGCCTCCTGAA
ATCGGCGACTCCTCTTAAATAAGGTCCCTTGCAAGATGATTATAAACTTCAAAGAAAAGAGTAAA
TTGCTTAATAGTTGTCTGATAGAGAACTTCACTATTCAACGTGAAAAGTCAGCGCGCTAAAGCTT
GTTTGCCTATTGGCTCATCTATAAAGACTCTTATGTTAATACAAT


Right flanking sequence: Indices 344147 -- 344646
GGCTTTGACGCGAACTAGGCCTAGGGTTGGTGGGTATTTCACACCTCTATCTACAGAGCTTCTCT
GCGGTTTACAGAGTCAATTGCCTAAAAAAAGATCACTTCGAATTATCAACTCCATACTTTAATGA
ATCACAGGCATAACTCTTAATTGCACACTCTTTTTTCATCCAAACTGGGCATGATGGTGATGGGA
GCAAGGAAAAAGAGAATGAGTCTGATATAGATGAAAAATGACACTTTTACTTTTCACTTGAATTT
CTTATTCAACTTGGATCTGACCCTACTCAATGAGGTCTTGCACAAAATAAATGTCTAAGAACAAC
TCAATAGAAAGTAGCCTACGGAGGCTTCTTCGGCTCACTAGATGCAGAGCTGAATTATGTCTCGG
GACGCATGCCCGACCTCATTTCCGATCCTCTATATTCGGAAGGATCTTCATGAGCTGCGATTTCT
AGAGAGAAGAGAGAGCTGAGATCTTGCCTTGGGATTGATTCTTAT



Found at i:345884 original size:14 final size:14

Alignment explanation


    Indices: 345865--345892  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

     345855 GTAACAAGGG

                          
     345865 TCTAAGCCTATTAA
          1 TCTAAGCCTATTAA

                          
     345879 TCTAAGCCTATTAA
          1 TCTAAGCCTATTAA

     345893 CAAGTACCTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36


Consensus pattern (14 bp):   
TCTAAGCCTATTAA

Left flanking sequence: Indices 345365 -- 345864
TCGGGACGCTGCATCAGGGCTCAACAATTCTCCGCCTGCTACTCAACATATTCGTATCTGGGCTT
TTACACTACTCGGGACATAGCTTTTCAGCATTAGAGAATTGAGACCGCACAAGTGATAGAACTAT
AGTGGGCATTCTTTCTATAGTTAGGGTCTACTCCATCGGCTAGCAATCAGCACGGATACACATAT
TACCGAAGGTCCCTATTGGCCAAGTATAGACTCCCGAAAGCCAGAAGTATTAAAGGAATGGTCAT
AGGAATGGGCGCATTATGTCGAGGTGGCCCCGATATCAAAAGCGGAGTAGCTCGCAGAAAATCCC
ATCTGACTCGGTCATATGCTTTTTCAAGGTCGATCTTAATCGCCATAAGTCCATTCTTACTAACC
GATCTCCTAATGGTATGAATGACTTCTTGCGCAACAAAGATGTTATCGGAAGCTTGCCTCCTTGG
GATAAAGCTAGCCTGCATAGGCGCCACCAGATCATGTAACAAGGG


Right flanking sequence: Indices 345893 -- 346392
CAAGTACCTTAGTGATTAGTTTATATGCAACACAGCATAAACTAATAGGTCGAAATTGGCTCACC
CTCTCCGGTAAGTCAACTTTAGGAATCCGTACCAACAAAGCCTCATGTAACTGGGGTTACAGCAC
TCCTACTTCAAAGGCATTGGTCACAATCTCAAATAAAGCATCCTTAGTTGTTCCCAAAAACTGAT
GGAAGAAACCCGCATGAAAACCATCAACGCCTGGGGCTTTCCAAGGCTTCATTTGATGTAAGGCC
TTGTAAACTTCATCAACAGAGATCTCCTTCCCCAGATTCACAGCTTCGGTTATAGGAATCTTCGG
ACACTGCCAACAACTATATTACCCCCTAAATCAGTAGCCGAATACGGGTCTTTATAGAACTCCAA
AACCATATCCTTTAGCGCATCCTGGCACTCCACCCAATTTCCATTTTCATTCTTCAACATGACTA
TTTTCTTACTTCTTATACGGCAAACAGTAGAAATATGAAGGAACT



Found at i:346544 original size:22 final size:22

Alignment explanation


    Indices: 346519--346563  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     346509 CAAACTAAGA

                                  
     346519 AGTAAGAAGGCATACTAGACGG
          1 AGTAAGAAGGCATACTAGACGG

                                  
     346541 AGTAAGAAGGCATACTAGACGG
          1 AGTAAGAAGGCATACTAGACGG

             
     346563 A
          1 A

     346564 CTACTCGCAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.42, C:0.13, G:0.31, T:0.13


Consensus pattern (22 bp):   
AGTAAGAAGGCATACTAGACGG

Left flanking sequence: Indices 346019 -- 346518
GCACTCCTACTTCAAAGGCATTGGTCACAATCTCAAATAAAGCATCCTTAGTTGTTCCCAAAAAC
TGATGGAAGAAACCCGCATGAAAACCATCAACGCCTGGGGCTTTCCAAGGCTTCATTTGATGTAA
GGCCTTGTAAACTTCATCAACAGAGATCTCCTTCCCCAGATTCACAGCTTCGGTTATAGGAATCT
TCGGACACTGCCAACAACTATATTACCCCCTAAATCAGTAGCCGAATACGGGTCTTTATAGAACT
CCAAAACCATATCCTTTAGCGCATCCTGGCACTCCACCCAATTTCCATTTTCATTCTTCAACATG
ACTATTTTCTTACTTCTTATACGGCAAACAGTAGAAATATGAAGGAACTTTGTATACTTTGTATT
GCGTTCTCCTTCTTGGAACCATCGAACCCTTGACTTCTGGAAACAGTACGTTTCTTCTTGGGCAA
GAACATTATTATACGCAGAAATCAGTTCCTTTTTCCAAACTAAGA


Right flanking sequence: Indices 346564 -- 347063
CTACTCGCAAGCACTCTCTGAACCCCCAAGATCCGTGCCTGCAGCTGTCTCTTGTTCCCAAATAA
ATAGGTTCCCAAAAACATTACGATTCCAGTTAACGAAGAGCAGTAGCTAGATGCTCCTCCTTCAT
CATTAAATCTCCATTCCTACTACGCCACTGATTCTCAATAAAATCATGCGCCAAAGCTCTATCCA
GTCTCTCATAAACCCTTCTAAAACCATCCCTTTTCTTTGTCCAAGTTGCCAAGGTCTTGTAGAGC
CAAGTCAGCCAAGTTACATGCACTAATCAAATTGTTAAACCTCAAGCACCGCTCCAAAGACACAC
TAGCACCACTGAACTTCTCGCTACTACTACAGACATCATTGAAATCGCCTACCATTAACCAAGGC
AGAGCGACTTCTGAAGCAAAACTTTCGAGCAGAAGTTATCTTTCTGACTTTACGTTATCTTTCTG
ACTTTACGTTATCTTTCTGACTTTACTTAGAATTAGAATCAGTAA



Found at i:347012 original size:19 final size:19

Alignment explanation


    Indices: 346988--347044  Score: 114
    Period size: 19  Copynumber: 3.0  Consensus size: 19

     346978 TCGAGCAGAA

                               
     346988 GTTATCTTTCTGACTTTAC
          1 GTTATCTTTCTGACTTTAC

                               
     347007 GTTATCTTTCTGACTTTAC
          1 GTTATCTTTCTGACTTTAC

                               
     347026 GTTATCTTTCTGACTTTAC
          1 GTTATCTTTCTGACTTTAC

     347045 TTAGAATTAG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   38  1.00

ACGTcount: A:0.16, C:0.21, G:0.11, T:0.53


Consensus pattern (19 bp):   
GTTATCTTTCTGACTTTAC

Left flanking sequence: Indices 346488 -- 346987
GCAGAAATCAGTTCCTTTTTCCAAACTAAGAAGTAAGAAGGCATACTAGACGGAGTAAGAAGGCA
TACTAGACGGACTACTCGCAAGCACTCTCTGAACCCCCAAGATCCGTGCCTGCAGCTGTCTCTTG
TTCCCAAATAAATAGGTTCCCAAAAACATTACGATTCCAGTTAACGAAGAGCAGTAGCTAGATGC
TCCTCCTTCATCATTAAATCTCCATTCCTACTACGCCACTGATTCTCAATAAAATCATGCGCCAA
AGCTCTATCCAGTCTCTCATAAACCCTTCTAAAACCATCCCTTTTCTTTGTCCAAGTTGCCAAGG
TCTTGTAGAGCCAAGTCAGCCAAGTTACATGCACTAATCAAATTGTTAAACCTCAAGCACCGCTC
CAAAGACACACTAGCACCACTGAACTTCTCGCTACTACTACAGACATCATTGAAATCGCCTACCA
TTAACCAAGGCAGAGCGACTTCTGAAGCAAAACTTTCGAGCAGAA


Right flanking sequence: Indices 347045 -- 347544
TTAGAATTAGAATCAGTAAGAGTTACGATAGATTCAGATAAATATCCTTCGTACAGTTCGCTGCG
TAGCGGTGAACCTCCATTCGTCCTGTTCAGCATCTTCCCGGAAAAACTTCTTACATATTTCCCTG
GCAAATATCGTAGAGTCGAAATGTAGCTGAACTCTCAAGGGGAGGAGTGATCAATTGAAAGAACG
AAGAAAGTTCTCACCGGTTGTAAAGCAATCCTATTCTGAATATGATTTTTTGAATTCAAATATGT
TAGCGTAACATTAGCTAGCTGAAAGAGTTTGAGTTCTCTTCATTTGTCCATCAAGCTAGCCAAGA
GAGAGTGTAAAAGAAAGAGGGATTCGTAAAAGCAGCCTTCTTTCTATCAATTGAATAAGCCCAGT
GAGTTGAAGAAAAAGAAAGGGATGGATGGCAGGAGAAGAAAAGGAAGAAAAGAAGCACATATCCA
AGTCGAATCTCCTGTCTTAGGAAGAGTGCTCATAGGCGCTGCAGG



Found at i:348231 original size:22 final size:22

Alignment explanation


    Indices: 348203--348246  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     348193 CTATCGGCAA

                                  
     348203 TAATCAGCTCTTTCATCCCCTG
          1 TAATCAGCTCTTTCATCCCCTG

                                  
     348225 TAATCAGCTCTTTCATCCCCTG
          1 TAATCAGCTCTTTCATCCCCTG

     348247 ATTGATGTAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.18, C:0.36, G:0.09, T:0.36


Consensus pattern (22 bp):   
TAATCAGCTCTTTCATCCCCTG

Left flanking sequence: Indices 347703 -- 348202
ACCGTAACCGTAATGAAAGTTCAGATCAAGTGCCAGAAGAAATGGTCGACTCTAAATCCGGATTG
GTTTTCATCGAGAATGAAAGATTTTCTCTCCTCTCCCGGCGCCGAACTACTTTTTCCCGAGTCAT
TCGTTTCCTTAAGCCATGTCCATACTAAAAAGCTAAATCGGATGGTGACTAGATTCATTCCTACG
TACGGGATTCTGTAACAGCAAAAACAAAGAAACCTACTACCAGATCAACAGTAGATCCCTGGTGC
ATCATTCCATATTTTCTTGGTGGTTGAGCCGATAGGTCTTTGAAGCAAGTAGACCCCTACCATAG
ATCCATATGGTCTATACGTATACGTACACTTCTATACTGCACCTTATCAACAACTATAAGGTAAC
CTTCGCTCCTGTCCTCCAAACCAAGACTCCTGATAGCATATTAGGTTCCTAATATAATTAGTTGT
TGAGCGCTCAATCTCTTTCTTCTTTTTCTTATCTCCTATCGGCAA


Right flanking sequence: Indices 348247 -- 348746
ATTGATGTATTCTGATTCGGTGTTTTGCTTGTTCGCCGCGTAGCGTCATAACATGGTTCGGTACA
GAGGGTAAAGTAGGAGAAGAGGCCGTTCACGGTGAGCTGTTAAGCGAACAGTCTGACGACCGCTT
TCAATCGCCAAGTGACCAGATCTTCACACGATCCCATTTGACTTTCTTCACAACCCAAAGATCGA
GGATGCTTACCAAGTGGAACAGTCAAGAAAGGATGCTAAGCAAGTGGAACAGTCAAGAAAGGATG
CTAAGCAGGTAATCCCCGCAAGCACAGAGAATTGTTCTAAGCTAGACCGATTCGAATGCTTACGG
GATGGCCCAAGGAATCCGCTCTTGCCAAAAACAATGAACTTGTTTTGTTCCTCAGTTGAAAAGAG
TGGACTTTATCTCATCGCCAATGAGTGAATGGAATCTTTTGCCCCGAGTGGGATTACACTGTCCT
TCCCTACATCTGGGGGTCGTATAGCCTTGCTTCGCAACATCCCTT



Found at i:348511 original size:30 final size:30

Alignment explanation


    Indices: 348441--348513  Score: 128
    Period size: 30  Copynumber: 2.4  Consensus size: 30

     348431 CCAAAGATCG

                    * *                   
     348441 AGGATGCTTACCAAGTGGAACAGTCAAGAA
          1 AGGATGCTAAGCAAGTGGAACAGTCAAGAA

                                          
     348471 AGGATGCTAAGCAAGTGGAACAGTCAAGAA
          1 AGGATGCTAAGCAAGTGGAACAGTCAAGAA

                         
     348501 AGGATGCTAAGCA
          1 AGGATGCTAAGCA

     348514 GGTAATCCCC


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  30   41  1.00

ACGTcount: A:0.41, C:0.15, G:0.29, T:0.15


Consensus pattern (30 bp):   
AGGATGCTAAGCAAGTGGAACAGTCAAGAA

Left flanking sequence: Indices 347941 -- 348440
ATCAACAGTAGATCCCTGGTGCATCATTCCATATTTTCTTGGTGGTTGAGCCGATAGGTCTTTGA
AGCAAGTAGACCCCTACCATAGATCCATATGGTCTATACGTATACGTACACTTCTATACTGCACC
TTATCAACAACTATAAGGTAACCTTCGCTCCTGTCCTCCAAACCAAGACTCCTGATAGCATATTA
GGTTCCTAATATAATTAGTTGTTGAGCGCTCAATCTCTTTCTTCTTTTTCTTATCTCCTATCGGC
AATAATCAGCTCTTTCATCCCCTGTAATCAGCTCTTTCATCCCCTGATTGATGTATTCTGATTCG
GTGTTTTGCTTGTTCGCCGCGTAGCGTCATAACATGGTTCGGTACAGAGGGTAAAGTAGGAGAAG
AGGCCGTTCACGGTGAGCTGTTAAGCGAACAGTCTGACGACCGCTTTCAATCGCCAAGTGACCAG
ATCTTCACACGATCCCATTTGACTTTCTTCACAACCCAAAGATCG


Right flanking sequence: Indices 348514 -- 349013
GGTAATCCCCGCAAGCACAGAGAATTGTTCTAAGCTAGACCGATTCGAATGCTTACGGGATGGCC
CAAGGAATCCGCTCTTGCCAAAAACAATGAACTTGTTTTGTTCCTCAGTTGAAAAGAGTGGACTT
TATCTCATCGCCAATGAGTGAATGGAATCTTTTGCCCCGAGTGGGATTACACTGTCCTTCCCTAC
ATCTGGGGGTCGTATAGCCTTGCTTCGCAACATCCCTTAGCCCTAACCTTAGGGTGCAATACTAC
TAAAATAACTAAATAGTATAGCCGTCGAAAGAGCTTTAGTTCGATACGAAAGACCTCACCCACGA
GAAGATGTCTTCAACATAAGCGCTGAAAGAGGCATCCCTAGGCTATTGGGAGCCTTAAGAGGCAC
TATTGGGAGCCTTAAGAGGCAAAGGAAAATGCGACAACCTAGACTCCTCAAAGGTGAAGTCTTGG
ACGAGGCAAGTCATATTCAATTGAGACTTGAGAAGCGGCTAAACT



Found at i:348906 original size:22 final size:22

Alignment explanation


    Indices: 348881--348924  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     348871 CATCCCTAGG

                                  
     348881 CTATTGGGAGCCTTAAGAGGCA
          1 CTATTGGGAGCCTTAAGAGGCA

                                  
     348903 CTATTGGGAGCCTTAAGAGGCA
          1 CTATTGGGAGCCTTAAGAGGCA

     348925 AAGGAAAATG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23


Consensus pattern (22 bp):   
CTATTGGGAGCCTTAAGAGGCA

Left flanking sequence: Indices 348381 -- 348880
TCGCCAAGTGACCAGATCTTCACACGATCCCATTTGACTTTCTTCACAACCCAAAGATCGAGGAT
GCTTACCAAGTGGAACAGTCAAGAAAGGATGCTAAGCAAGTGGAACAGTCAAGAAAGGATGCTAA
GCAGGTAATCCCCGCAAGCACAGAGAATTGTTCTAAGCTAGACCGATTCGAATGCTTACGGGATG
GCCCAAGGAATCCGCTCTTGCCAAAAACAATGAACTTGTTTTGTTCCTCAGTTGAAAAGAGTGGA
CTTTATCTCATCGCCAATGAGTGAATGGAATCTTTTGCCCCGAGTGGGATTACACTGTCCTTCCC
TACATCTGGGGGTCGTATAGCCTTGCTTCGCAACATCCCTTAGCCCTAACCTTAGGGTGCAATAC
TACTAAAATAACTAAATAGTATAGCCGTCGAAAGAGCTTTAGTTCGATACGAAAGACCTCACCCA
CGAGAAGATGTCTTCAACATAAGCGCTGAAAGAGGCATCCCTAGG


Right flanking sequence: Indices 348925 -- 349424
AAGGAAAATGCGACAACCTAGACTCCTCAAAGGTGAAGTCTTGGACGAGGCAAGTCATATTCAAT
TGAGACTTGAGAAGCGGCTAAACTACCTAATCTTTCTATGCCAGGGTATCTGATACTTTACTTAG
AGAAGCTACTCTCTTTATACGATACGCTATTTTCTTTTAGTATGGTTCCGGTGAGTTAACCGGCG
GCAGGTCCGAGGTTGAGGCAGCGGTAGTACGATTCTATCCCTTCGAGTCTAGGTCTACCGGTGGG
TCGTCCTCTGAGTCACTCTCGCGAGCAGAGAGACGGAATTCAAGCCAGCAAATGACTGAGGTAGG
AAACGAGAAAGGTAAAGAGAAAAGGCCGGAAAGCGGGTAAGAAGAGAATCTCTCACCTTACACTC
TGACTATTACTAATGGATTCTTATGGGTACCTAGTACTTATTCTATTAGTTTAAAAAAATAAGAA
TTACCGTATGTCCTGTCAATTCAATAGTGTCTGGCTTCCCGGCTG



Found at i:351852 original size:29 final size:29

Alignment explanation


    Indices: 351819--351876  Score: 98
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     351809 TTTCTTCCTT

                   *                     
     351819 TGCATAGGAGCTTTAGGAATGTCGATAGG
          1 TGCATAGCAGCTTTAGGAATGTCGATAGG

                                  *      
     351848 TGCATAGCAGCTTTAGGAATGTTGATAGG
          1 TGCATAGCAGCTTTAGGAATGTCGATAGG

     351877 CTATCCTTAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.28, C:0.10, G:0.33, T:0.29


Consensus pattern (29 bp):   
TGCATAGCAGCTTTAGGAATGTCGATAGG

Left flanking sequence: Indices 351319 -- 351818
CGAAAGCTTTCCTACCTCTACCCTGGACTCAATAACCTTCCTAAAGATAAAGCGAAAGGGATACC
GCTTCGGAACTTAAACTGGGGGGACCATCATCACTAGAACCAGGAAGGCGAACTTAAGCAAGCCC
TATATTAAAGAAACCTCAACAACTCTATTTGACTATCGAACGGCTCTTGGTGGTTTAGGTTTAGT
AGGAGAATGGCTTAAGGTAGCCCATGACTCTCGGTCTTATGTAAAGGTAGCGAAGTAACTTTCTA
TAATTAGGGAAGTGCTAGGCTACTACTAAGACTGGTTTAGTTGAGTGAAACGACTGCTATTGCCA
AGGAGGATGGATGCCGTCCGCAATCAGTAATCGGTTCGATAATCTATCCAAAAGCTTTTTTTTCT
TCGTAGATGGTAGATGGCGGGGAGACAAAAAGGGAGTGAGTGATCTCGGAAATATTGATTTATCG
CCTAATCCAGATTCTATCATTGAGTTCTCTTTGATTTTCTTCCTT


Right flanking sequence: Indices 351877 -- 352376
CTATCCTTAAGTTAGCACTCAGGGTAGATTTCAGTACTCATTGGTAAATTAGACAGATAAGATCC
CTTTTCGTCCAGTAGGACTCCTTTTTACTAGGTGGGTCAGACCCTTTTCCAGTTCCTGCAATGGG
TTTTTTATATCTATATTTTCATAAAAAATAAGCGGCTTCTATTTTCTTTTCCAAAACTTTGAAAA
CTGATCGAATGTATTCTATGAAATAGATTGATTTAAAAATGAAAGGACACCCGCATCCTACTAAG
ACTATGACTGATCTATATCTCTGGCTGGGCATGGATTACCAATCCGAATACACAGCAGACAACCA
AGTCACAAGCCGGAGTCTAATATCTTTCTATAATCTCTTTCTTTGTCGACAAATGAAAAAAGGAT
TGACAACCCGTGTAGTTCCCTCTTATCTATCCAAGAAGGAATGAATTCAAGACTAGTGCGGATTT
CCTTTCATACAATCTGATAGTTTATTCCAACAATATTACTGGACT



Found at i:352807 original size:21 final size:21

Alignment explanation


    Indices: 352782--352824  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     352772 TCAAGGCTAT

                         *       
     352782 TACACAAGACTAAGATCCTAG
          1 TACACAAGACTAACATCCTAG

                                 
     352803 TACACAAGACTAACATCCTAG
          1 TACACAAGACTAACATCCTAG

             
     352824 T
          1 T

     352825 TTGTCGTCGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.42, C:0.26, G:0.12, T:0.21


Consensus pattern (21 bp):   
TACACAAGACTAACATCCTAG

Left flanking sequence: Indices 352282 -- 352781
TTCCCTCTTATCTATCCAAGAAGGAATGAATTCAAGACTAGTGCGGATTTCCTTTCATACAATCT
GATAGTTTATTCCAACAATATTACTGGACTTGTCAATGATTTTTTTCTTTCATCTTTTAAAAAAA
AGCATGGGACCTCCGAAAACCTCCTTTAGTAAAAGAAGCTCATATGCTTCGAAAATGGAATTCAA
AGAGGCAGAAGAGGGTCCAACCTCTGCTCGACCTACTATGTTAGCGGATCTGGTAAGAGCAGTGC
CCTTATTGAAAGGAGTAGTCGATAAAAAGTACTCTATGGTTCGTTGTCCAACAAAAGAATTATTA
AAAGATTTCACTAGGTCTCCCGTTACTTGGTAGTCCAAAAGCAAGATTCACATGAAAGGACATGC
AAATCTACTTATCAATCATTTGATTTCTAGGCACAAGCCTCTACTATAACATCCATCAGACTTTG
AAGCAGCAAAGCAAAAAAGAAAAGAAAGAGACTCATCAAGGCTAT


Right flanking sequence: Indices 352825 -- 353324
TTGTCGTCGAGGAAAGACGACTAGCTGATGACGCTTCCTTTCCACCCACGTGGCAGCAAAATCCG
TCTTTCTTAAAGTAGATTAAAGGCCCCTAAAACCGGAGAAGGAAAATCCTTAAACCAAAGAAAAG
ACCAGACGCGAAGACTTCCTATTGATTTTCTGGGAAAAAGAAAGAGTATTTTATACGATTTGTCT
CTTTGAAGCATCTGATTTTCCTGTGAAGAGTCAGCGCATACGGCATTTATTCGAAACGAGGAGAC
TCGGTTGAGTCGGCTAAGCAATAAGTAAAGGAGTTTGACCCTTCATCTGGATTTTCCCCTCTTAT
GAGACTTTTCAACTCCCTTCACTTCAAAGTGAACTCTTTCCCTCGAGCTGAGCTAAGCGAGAAAT
ACGGAAGCTGGAGATTAGGCAGGAAAGAAGGTGACAGGTCTTTTGGCCAGGACTCTTGATTCAAG
AAGCTCTGAAACCAAATCAAACTGGATGACAGTATAGGGCATACA



Found at i:359325 original size:19 final size:19

Alignment explanation


    Indices: 359301--359339  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     359291 AAGCAATGGA

                               
     359301 TACTTTGTAATCTACTAAT
          1 TACTTTGTAATCTACTAAT

                               
     359320 TACTTTGTAATCTACTAAT
          1 TACTTTGTAATCTACTAAT

             
     359339 T
          1 T

     359340 GACGTTCGTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.31, C:0.15, G:0.05, T:0.49


Consensus pattern (19 bp):   
TACTTTGTAATCTACTAAT

Left flanking sequence: Indices 358801 -- 359300
TGAGCTTCCTTTCCTACTGGCTACCAGATTCACCTAGAGTCTTTCATGTCCCTCTTGAAGAATCA
GATGGGTCCTAATCTTTTCCAATTTCCCAGTAGCCGGGGGATGATCCTCAGATTAAGGCGGAGCC
GATGGCTATACTTCAGCCCAGGATGAGAAAGATCAAGAATATTGCAGTGCCCATGATACTGGTGT
TCTAATCCAATATCTATCCTGAAGACGCTACTTAGGAGGACTACAGCTTCATCACCTCTCAATTT
CCTCGCTTTGATCCTTGAGTCCAGAACTACTTCTTTGCTAGCCTGAGTCCGCGTGATTTATCTAT
CTCATTATAAGCGCCGAATCCCTACTTCTTGTTGCTAGCAAATGAGAAAATAAGAAGTCTTTGAC
TGTGACAGCGACCGAATACCAAGCTAAGCGGAATGTAAGCCTTTTTGTTACTTACTAGCTGCTGC
TTGTGAAGTATGTCAGGAAATTCAATTTGAATTCGAAGCAATGGA


Right flanking sequence: Indices 359340 -- 359839
GACGTTCGTTCTCTTAATTGAATTGCAATTAAACTCGGCCCAATCTACCTTACTTCCTGAGTGCC
CGAAGGTCTTCAAAGAAGTGCTGCAAAGGTCTTAACGAGCCTAACCTTTTCTTTGTTCCTAGCCA
GCCTATTTTAAGGCGAAGATCAAGTTTACCAGAATGCTCCTATTTCAGTAGTTGATCGAATCCTG
CCCTACTCATCTATCGTTGAAGGTATGGAACTCGTATCCCCAGGGTTCCACTTAATTCGAGTGCT
CGCTCTTCTCTCCGCTATCTGTACCAGAACCAAAACAAGGTCTTTCTCCTTCAGAAAGAGGGTCC
GCCCGTAGTATAGTAGAGCGTGTACCAAAATGCATGGCCAATATATGTAATTTCCCTCGCCTCTG
CTCTGGACTGAAATGTTATCCATTCTATTTAACGAAAGCAGCTCTGGTCATGACTTTCCTATTCC
TTTTGTGCCAGTTGAAGGCGACGGTGTAGAGTAGAGTTAGGGTTC



Found at i:360016 original size:24 final size:24

Alignment explanation


    Indices: 359984--360031  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     359974 CCGATCCATA

                                    
     359984 AATGAGAGTCAAGCTGTGAACAAC
          1 AATGAGAGTCAAGCTGTGAACAAC

                                    
     360008 AATGAGAGTCAAGCTGTGAACAAC
          1 AATGAGAGTCAAGCTGTGAACAAC

     360032 GAAGAATGAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.42, C:0.17, G:0.25, T:0.17


Consensus pattern (24 bp):   
AATGAGAGTCAAGCTGTGAACAAC

Left flanking sequence: Indices 359484 -- 359983
GAAGATCAAGTTTACCAGAATGCTCCTATTTCAGTAGTTGATCGAATCCTGCCCTACTCATCTAT
CGTTGAAGGTATGGAACTCGTATCCCCAGGGTTCCACTTAATTCGAGTGCTCGCTCTTCTCTCCG
CTATCTGTACCAGAACCAAAACAAGGTCTTTCTCCTTCAGAAAGAGGGTCCGCCCGTAGTATAGT
AGAGCGTGTACCAAAATGCATGGCCAATATATGTAATTTCCCTCGCCTCTGCTCTGGACTGAAAT
GTTATCCATTCTATTTAACGAAAGCAGCTCTGGTCATGACTTTCCTATTCCTTTTGTGCCAGTTG
AAGGCGACGGTGTAGAGTAGAGTTAGGGTTCGAGTCCAGCGGTTAAGGGGAGAAGGGAAGGCTTT
CCTATTCATGATAGAAGGCTTGCTAACCGGAAGGCATGGCATAGTGACTAGTGACGAGAGCAGGG
AATCTATGATTGACCCGCCTTAGCTTGTGTGACTTCCGATCCATA


Right flanking sequence: Indices 360032 -- 360531
GAAGAATGAAAATAGACATTGGGTCTAATTTTCTTTTTCCCTGTCGTCCAATTCCTTCCTTTGGC
TGGAAGCCTTTACTGGGGTCGGACCATCTACATACAACCGGATTTCCGATAGAACTTCGTAGATC
TTGCTTACCAGTCGGTCATACAAGTTTTGTTTGGTTAATATAGAGAAGTTGTTACCGACAAGGGT
TCGGCCAAAGCAAAATCAAGAGAATACGAGTTCGTGCTATGAATCAGAGATGGCACTAGCCCCAT
GGATTCTTTAGCCCATTCTATTAAAATAGAATACGAAATAGATTGAGTAGTCATCACGAGATCAG
CAGCGTACAGGACAAGTCCTTCTTTTCGTTCGGGTTCCTGAAGGTCTGATCTGAGGCCTCGAGGA
ATGAGTGAAACTGCAATGCCCGACCCGAGTAAGGAGGATATTACTCGACTTACAAAGAGAGGTAC
GATTGCCCTGAAACAAGTGCAGAAAGAGTCTAAGCAAGCTAAAAT



Found at i:362811 original size:21 final size:21

Alignment explanation


    Indices: 362786--362828  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     362776 CCCGTCACTT

                                 
     362786 GAAGAATCACGAGCTATTAAA
          1 GAAGAATCACGAGCTATTAAA

                                 
     362807 GAAGAATCACGAGCTATTAAA
          1 GAAGAATCACGAGCTATTAAA

             
     362828 G
          1 G

     362829 CTCTTAACTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.47, C:0.14, G:0.21, T:0.19


Consensus pattern (21 bp):   
GAAGAATCACGAGCTATTAAA

Left flanking sequence: Indices 362286 -- 362785
CCCAAAGCCTTACGGCTCACTTCTTCGCCCCTTCTCCTAAGGCTGATAATTCCTAAGCTTAATCG
AAGAGGTAAAAAGCAGTTCAAGCAAGTGGGATAGACATCAAAGGTGTCGAGAATGGCTATGTTTA
TGAGTTCGCTTCTATTCCGCCCTTCCTTATCGCTCGTGTGCGTGCTATAGACAATATGCTGGCTG
CACGGGCATAGGTTTAGAGTTAGCTTTCACAGCTAGATAGAAAGGAGATAAAGAGATTTTGCAGG
TGTCAGACATCAGATGCGATTCTTTTCGTGGGATTTTTAATAGCTTTTCAATTGTATCGGTGGGA
AAGAAAGGTAAGGTAACTTCAATAGTACCGTTCAAGCCTCTTCGCCCCGAGGATCCATACCTACC
GAAGGTCAATCTCAGCAGGTAGGTATGAGGCGCTGAAAGCCCATGCACCAAGATGAGGACGGACT
TTCTATCGGGCTTTCGGTTAAGGGACTGGTCTCTTCCCGTCACTT


Right flanking sequence: Indices 362829 -- 363328
CTCTTAACTCATCATACTCCCCGAAGAAAGAGAAGAAGGGATCAACGAACATTATGATAGAGGCT
CTCTCTGTGCAAGACCTGTACTCTATCAATGCTCCTTCAACTCAAGATCCCCGAAAAAAAACCGA
TTAAGTCGAATGCTCCTATCCGATTCCTCTTTCACATTTGAATGGGTTTCACCCTATGATGCGAC
AAGAACAACTCCCGAAAGGTGGAATAATGGAACTAAGTGAGCAAGCATGAACAGCGGCGAAAGCA
GATGAGAGACTAAAGCCCTTACGCATTAAGCTGAGTAAAAGCTATCCATTCCTTACTTACGAGCG
AGTACCCCGAGTCCGTAAAACAAGGATAGCTTTCTTCTTGTTTGCTTTTCGGGTAGCTGTTCTGA
GAGTGAAGAAGTTTCCTAGCTTGAGAGTTAGTTGGGTTTTGCTTACGAAGCCTATCATGACTTGT
CTGATGGGCTACTTCCGATACTTCTTTATTCAAAGGCGGAGGGAG



Found at i:364340 original size:18 final size:18

Alignment explanation


    Indices: 364317--364352  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

     364307 GACTAACACC

                              
     364317 TGATAGTGGAATATGAAA
          1 TGATAGTGGAATATGAAA

                              
     364335 TGATAGTGGAATATGAAA
          1 TGATAGTGGAATATGAAA

     364353 ACCCCGTGGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28


Consensus pattern (18 bp):   
TGATAGTGGAATATGAAA

Left flanking sequence: Indices 363817 -- 364316
AAAAACAGTCGTAGCAAAAGCTGAATCCACTGAAACTACAAAGCTAGATGAAATAGAGGTGCTAC
CTAGCCCTCCCGCTGCTAACCATAAAGCTGTCGAAGGTATTCCATAACCTGATCCGAAACCCCTT
GCTTAAGAGCGATTTTACGGGGTTCTTTCACTAGCTTCGGAACTTGAATAACGTTTGTCTTCAGT
CGATCTAGCATGTTTAAAGTCACCATTGACATTCCTAGACAGGAAGGACTAGCTTAGAAGATTCT
GTGCTAATATTCTGCAACCTTGAGAAATACAATAAATAGGCTCGCAAGACCTCACTCTCTATCTT
TTGTTTTCGGGTATGTCGTTCTATCTTATATAAGTCATTCTATTTAGCAAATCTGTTCAAGCACC
GGGACTTTGCAACTTGAGAAAGAAGCGAGAGGAGAATAGCTCAGTGGGAAGAAAAGGTCGAGAGG
GAAGATTGCTAGACTAGCGAAATAGATAGGCGATTGACTAACACC


Right flanking sequence: Indices 364353 -- 364852
ACCCCGTGGTTATAGATAGGGAGAGATAGAATTAGATATCCATCTCCGGGACCGAAAACTGAAAA
GCAAGCAAGATCAGGCACTAGCGATCGCGGATTCGAGTCCTTATCTCAGGGTTTCAGAAAAGTTA
GTTGCTTGATGCAAGTTTAGGGAAAACACCAGCCTTTATTAAGTCTCGGAACCAAAAGCGGGTTC
CAACTCGATAGCTCGAAAGCGGATGTAAGGATTGCTCCTTCTTGGACCATCTATCTCATCTATGT
TCATTCCCAATGTTTGAGAAAGAAGGGCGTTCGGCTCATAGATCTTTCTTTATGGTATTCATCCA
ACCACCTTGGCCAAGGCGGTGCCCTAAATCAATCGGCTTGTAGACTGTTTTTGACTTTGTTGAGC
ATGACGAGCTAGTCAGTATCCCGTACCGGGTTTGACCCTCTCTTTTTCTTATAGACTAGAAGCTG
AACAGCTAGCAGCGTGGTTTTGAAGAGCACGGGCAGCAGGTCTTG



Found at i:366581 original size:30 final size:30

Alignment explanation


    Indices: 366545--366609  Score: 94
    Period size: 30  Copynumber: 2.2  Consensus size: 30

     366535 CTCTATCCTT

                      **                  
     366545 AGGCGAAGGGTTAAAAGAAGGTGAGCCGAA
          1 AGGCGAAGGGGGAAAAGAAGGTGAGCCGAA

                        *                 
     366575 AGGCGAAGGGGGCAAAGAAGGTGAGCCGAA
          1 AGGCGAAGGGGGAAAAGAAGGTGAGCCGAA

            *    
     366605 GGGCG
          1 AGGCG

     366610 CTATAGATTA


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.35, C:0.12, G:0.46, T:0.06


Consensus pattern (30 bp):   
AGGCGAAGGGGGAAAAGAAGGTGAGCCGAA

Left flanking sequence: Indices 366045 -- 366544
TTGGCAATTACGTACCCTTTTAACAAACCTTGAATCAACAGAGACAATCTCGCTCATACGAGAAA
GGAAGGCAACGGAGTTAACGAAGTTGGGGACAAGTAAAATATTGAATCTCTTCATCCCTGTCTAG
AAATAGGCTGTGTCGAGACTGCAATTTTAGCTTTCGGGTTAGACTTTCTCGGTTCTGCTTCAACT
CTTTATACTTAGGTTGAGTCTAGCAGGCGTACTGGGTATACCTTTACGTCGCTTGCATTTCAGAA
TCACCCGAAGACGAGCTATTAAAACTAAAAAGGAGAGGAGTGAAGTTCAGGAAAGAAGAATCTTA
CTCAACGGCTAGAAAAATAAAGGATTCATCCGAACTCCTTGCTTCAAACTTGGGCAAGAGTTATT
GGATTCAGCTTTACTTTGTGCTACAATACCCGATCGAAACCAGAATCTTGTCTTCAGCGAGGTAG
GGGGCTTAAGCTATTAAGCGAGCGTATGTATATGTCTCTATCCTT


Right flanking sequence: Indices 366610 -- 367109
CTATAGATTATTTGGAAGGGCGCTATAGATTATTTGTTGGTTTAGGCTTTCTCTCTCTTAATGAT
ATTTCTAAAACAGCGCTCCGGCATAACCAACTAATTAGTCTGCAACCTTTAGAGATACAAGCGAG
TAATCCTAATTGTACTCAGTGGGCAGAGCAGGGATTCTCGAGTCGGTGTGAAAAGTGGGAAAGTG
CAGTACGTGCCTAAGGAAAAGAATTTGGAGACTAAGTCGAATGGTATGGCGTCAACTAGGCTTGA
TAAGCCGACATCTTTGAAAGTGGGTAATCGTGATGGTGCTCAATTGGAGTCAGGTGTTCTTGTGG
GTGAGAATAATATGATGGTTGATAGAGTGTCTTTGGCTGCGGAGTAGGACGATATGGGGGATCAA
TTGATGTCGGATAGGCTCATATGTTCCCTTAAATCCTCTGACCATAGGACCAGGGACCCGCCAAA
TTCTTCGGGTATTTCGGTAGTTCCTGAAACCCAATTAAACAATTT



Found at i:366630 original size:22 final size:22

Alignment explanation


    Indices: 366602--366645  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     366592 AAGGTGAGCC

                                  
     366602 GAAGGGCGCTATAGATTATTTG
          1 GAAGGGCGCTATAGATTATTTG

                                  
     366624 GAAGGGCGCTATAGATTATTTG
          1 GAAGGGCGCTATAGATTATTTG

     366646 TTGGTTTAGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.27, C:0.09, G:0.32, T:0.32


Consensus pattern (22 bp):   
GAAGGGCGCTATAGATTATTTG

Left flanking sequence: Indices 366102 -- 366601
ACGAGAAAGGAAGGCAACGGAGTTAACGAAGTTGGGGACAAGTAAAATATTGAATCTCTTCATCC
CTGTCTAGAAATAGGCTGTGTCGAGACTGCAATTTTAGCTTTCGGGTTAGACTTTCTCGGTTCTG
CTTCAACTCTTTATACTTAGGTTGAGTCTAGCAGGCGTACTGGGTATACCTTTACGTCGCTTGCA
TTTCAGAATCACCCGAAGACGAGCTATTAAAACTAAAAAGGAGAGGAGTGAAGTTCAGGAAAGAA
GAATCTTACTCAACGGCTAGAAAAATAAAGGATTCATCCGAACTCCTTGCTTCAAACTTGGGCAA
GAGTTATTGGATTCAGCTTTACTTTGTGCTACAATACCCGATCGAAACCAGAATCTTGTCTTCAG
CGAGGTAGGGGGCTTAAGCTATTAAGCGAGCGTATGTATATGTCTCTATCCTTAGGCGAAGGGTT
AAAAGAAGGTGAGCCGAAAGGCGAAGGGGGCAAAGAAGGTGAGCC


Right flanking sequence: Indices 366646 -- 367145
TTGGTTTAGGCTTTCTCTCTCTTAATGATATTTCTAAAACAGCGCTCCGGCATAACCAACTAATT
AGTCTGCAACCTTTAGAGATACAAGCGAGTAATCCTAATTGTACTCAGTGGGCAGAGCAGGGATT
CTCGAGTCGGTGTGAAAAGTGGGAAAGTGCAGTACGTGCCTAAGGAAAAGAATTTGGAGACTAAG
TCGAATGGTATGGCGTCAACTAGGCTTGATAAGCCGACATCTTTGAAAGTGGGTAATCGTGATGG
TGCTCAATTGGAGTCAGGTGTTCTTGTGGGTGAGAATAATATGATGGTTGATAGAGTGTCTTTGG
CTGCGGAGTAGGACGATATGGGGGATCAATTGATGTCGGATAGGCTCATATGTTCCCTTAAATCC
TCTGACCATAGGACCAGGGACCCGCCAAATTCTTCGGGTATTTCGGTAGTTCCTGAAACCCAATT
AAACAATTTGAATGTGATGATTGATCATGTGAATGACTCGGATAA



Found at i:367644 original size:18 final size:18

Alignment explanation


    Indices: 367621--367658  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     367611 ATGGTGGGTG

                              
     367621 ATTTTAATGATATTAGTA
          1 ATTTTAATGATATTAGTA

                              
     367639 ATTTTAATGATATTAGTA
          1 ATTTTAATGATATTAGTA

              
     367657 AT
          1 AT

     367659 AGTTCGGAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50


Consensus pattern (18 bp):   
ATTTTAATGATATTAGTA

Left flanking sequence: Indices 367121 -- 367620
TTGATCATGTGAATGACTCGGATAAGAGTATGGATGTTGCTTCGCCTGGTGAGCATGCAAAAACA
GGTGATTTGTCTTGTCTTTCTTAATGAATGTACTGCTATGGAATAGTAGGGTAGCTGGTAGTAAA
GCTTTTCGTCGTAATAGCAGAGATTTCTTGCGGCTTTATAAACCGCATATTTTTATTGTTGTGTA
ACCCCGTATTTCTGGACAACGTGCGATTAATACTGAAAGGAAGCTTGGTTTTTCTAATTTTCACA
TTGTTGATCCGATAGGTTTCTCGGGTGGCTTGTGGATTTGTTGAGATAGTCCTTGTGTGAATTTA
GAAATTATTTTTACTTCGACTCAAGTAATTAATGCTATCATCAAGATGGAGGGTGAACAAGATTG
GCTTCTTTTGGCAGTATATGCAAGTCCTATTTTTTCAATAAGGCAGAAACTTTGGGAGAATATGG
AGGATTTTGCTACGGTGGTGGGTCTCCCTTGGTTAATGGTGGGTG


Right flanking sequence: Indices 367659 -- 368158
AGTTCGGAAAAATTTGGTGTAGTTGATGTGTCGCTAAATAGGTGTTTGAGATTTTATTCAATGGT
GGCAAATTGTGGGCTCTCGGATCTTGGCTTTCAGGGTCCTTCCTAATACATGGACAAATAGAAGA
AAGGGTGGTCATCGCATTAATGAAAGGTTGGATCGTGCTTTAGCTAACTCGGATTGGAGATTACT
GTTTCCTGAGGCGATAGTGAAAGATTTGCCTCGGTTTTACTCTGACCATTGCCCCATTCTTGTGC
AATGTAAAGAGGACATTGTGATTGATGCGTCAAAGAAACCTAAAAGGTTTCAGGCGATGTGATTG
ACACATTGTGAGGCTCATGACTATATTACCAGCTGCTGGGAAGCTTCGAGGGGAGATTTGATGCA
TAAGTCAGCTAGTCTTGTGGAGGCTTTAAAAACATGGAATAAGGATGTATTCGGGAATATTTTTC
AGAAGAAAAAGGAATTGAGGGCTCGGATTTTTGGCATTCAAAAAG



Found at i:372284 original size:18 final size:18

Alignment explanation


    Indices: 372261--372296  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

     372251 TTTATTTAAA

                              
     372261 AAAAAAAAGACTACTACT
          1 AAAAAAAAGACTACTACT

                              
     372279 AAAAAAAAGACTACTACT
          1 AAAAAAAAGACTACTACT

     372297 GATGCCCATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.61, C:0.17, G:0.06, T:0.17


Consensus pattern (18 bp):   
AAAAAAAAGACTACTACT

Left flanking sequence: Indices 371761 -- 372260
CCTCTGAACTCAAATACTCGATGCCTCACCAAGAGGTCTTAGCATTATGCTCATCTTTGCCTCAA
ATTCACTGATGTGTCTGACCCCAGTCTTCACCCTGTACTGACCCTTGTGCCTGCAAGCAAGTCAC
CCTCATGGTTGTAATGCCCACAGAAGCCATGTACTAGTGCCTCGACTGAACAACCCTCGAGTTGT
AGTGCTACCCCGTTTACACTGATCATAACTAGTATCTTGTCTCATTTGCCTCAATCTCGGTGCCT
AGTGGTCTCCCCCACTCAAGCTTGGAACCCACTCTGAGAATCTCGGATAGTGCCTCAGTCCTCTG
ACCTTCACCCTGCTGAGTCAGCTTGGTATCCCTCTGGGTCTCGTGCCTTCTTTCCGGCGGTTTTG
GTCTTTTATGAGAAAACTGTACAAAAGTGAAAAAGGTATCAAGAAAGTTCGGTTCGTATATATAA
ATATGTGTTTGCGTTCGAGGAAAAAATCTTAACCCTTTATTTAAA


Right flanking sequence: Indices 372297 -- 372796
GATGCCCATGTCCTGTCTCCTTTTCATTCTTTAAAAATTTCAGAGACCTCTGTTGCGTGCGAGTC
CTTTCCGCCAGCGCCTGGTCTTATTTTCTTACAAAGCTCCTCATAGTGCTGCATTCTGATTGAGT
ATGATAGTTTGAGCTGCTTCCTTGACTTGCGCAGCCGTGGGAGTGGAACTTTCATCGGTACGGTT
TGAGTTTTCGTCGTTGGGATTGGATTATTCAGAATCTATCTGACTCAGACTCCACCTTGAAAAGG
GATTGGATACAGGATGTAAATGGAAAAAAGGCAGATCATGAAGAAGAAGAGTGAAGAAAAAGATT
CGCCGGTCGGAAAAGAGTGAAGTCTTCTCTCATTCTATGAACTGACTACGACTACCATTTTTGAC
TCTAAAGGGAGAGGCCATTAGCGGTCTTAGAGACAAAGGTTGTAAGAGAATGTTTCTCAGTTAAG
ATACGAACAGGAGGCATGCCGTGTATAGTATAAAAAAATAAGAGG



Found at i:386805 original size:22 final size:22

Alignment explanation


    Indices: 386777--386820  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     386767 ATGAATCGGC

                                  
     386777 ACTCTATTAAGGTTTGTGTTCA
          1 ACTCTATTAAGGTTTGTGTTCA

                                  
     386799 ACTCTATTAAGGTTTGTGTTCA
          1 ACTCTATTAAGGTTTGTGTTCA

     386821 GTCGATCTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45


Consensus pattern (22 bp):   
ACTCTATTAAGGTTTGTGTTCA

Left flanking sequence: Indices 386277 -- 386776
AATTTGGATTTGGAAAAATTCATAGTCAAGCCCGAGGCCTTTGCAAAATCAGACAAAACCTCCAT
AACCACATCTAGCGCTTGTAGATTGATCCAGTCTCAGCTCAATAAATATCGTATAGTAAGTAGTG
AATGTTGATGTGTGATATTGAATATTCATGCTCTCATCTAGATTCTCGGATTTAGAAGCTGGCGA
CCCAGGGACCTTTGAGAGCTACGTGCCGGGTCGGGTAAACGTTGGTGTACAATCTAGTGTCATAG
AGAGAGAAAATGAAGTATTCAAATCAGATGCTATGCTACTTTGCTCAGCGAGTCACCTTCTCTCC
GTTCACCTTTCCATGAGCAAGAATCTGACATTGAATGCTTGAGCCGATGGTAGGCTCTGACAAGA
CCTTTTCATCGGTTTAACTCTCTGGTTTACTTGTCTGATGGGCTACTTCAGGAAAGCAAGTTGAT
AGGCAAGATGCTGGTTGAGATTCCTACTTACTTGAATGAATCGGC


Right flanking sequence: Indices 386821 -- 387320
GTCGATCTTGGATAAGCTACCTAAAAAGAAGGTAAAACATTAAGTGAGCAACTCAATCTCGAATT
TAAGTAAGGAAAGGGACTTTGCGCCCTATTTAACCGTCTTTCCCCAAAGTAAACCAGAGAGTGAA
ACCCATTTCCACTAAAGTGAAACCCATTTCCACTAAAGACGGGTGACTTTACAAAGGGGGCGGAA
GTGGGGAGTGAATCAATTCCCCGAGCGTTTAAAGAGGGGCATGTAGCTAGTGACTCTGCAGCTAA
CTCATCATCATACTTTTGCTCATGCTAATTTGAATCTGCAGTGAGAAATATACTAAGTAGTGAAT
CGAATGAATGAAAAAGAGAATCTCATAATGTTTCAGTTCGATTTCTCCGAAAACCCTTTCGCCCA
GTAGTTCAGTTGCCATGCGTAGTCCGAAATGGGCTCGCAACTGTCGGTCAACGAAGGGGGCAGAG
TAAGAGAAAGAGGGCTGTTGCAGAATGATTCAATTCTCTATCGAA



Found at i:386969 original size:21 final size:21

Alignment explanation


    Indices: 386945--386988  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

     386935 TAAACCAGAG

                                 
     386945 AGTGAAACCCATTTCCACTAA
          1 AGTGAAACCCATTTCCACTAA

                                 
     386966 AGTGAAACCCATTTCCACTAA
          1 AGTGAAACCCATTTCCACTAA

              
     386987 AG
          1 AG

     386989 ACGGGTGACT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23


Consensus pattern (21 bp):   
AGTGAAACCCATTTCCACTAA

Left flanking sequence: Indices 386445 -- 386944
TAGATTCTCGGATTTAGAAGCTGGCGACCCAGGGACCTTTGAGAGCTACGTGCCGGGTCGGGTAA
ACGTTGGTGTACAATCTAGTGTCATAGAGAGAGAAAATGAAGTATTCAAATCAGATGCTATGCTA
CTTTGCTCAGCGAGTCACCTTCTCTCCGTTCACCTTTCCATGAGCAAGAATCTGACATTGAATGC
TTGAGCCGATGGTAGGCTCTGACAAGACCTTTTCATCGGTTTAACTCTCTGGTTTACTTGTCTGA
TGGGCTACTTCAGGAAAGCAAGTTGATAGGCAAGATGCTGGTTGAGATTCCTACTTACTTGAATG
AATCGGCACTCTATTAAGGTTTGTGTTCAACTCTATTAAGGTTTGTGTTCAGTCGATCTTGGATA
AGCTACCTAAAAAGAAGGTAAAACATTAAGTGAGCAACTCAATCTCGAATTTAAGTAAGGAAAGG
GACTTTGCGCCCTATTTAACCGTCTTTCCCCAAAGTAAACCAGAG


Right flanking sequence: Indices 386989 -- 387488
ACGGGTGACTTTACAAAGGGGGCGGAAGTGGGGAGTGAATCAATTCCCCGAGCGTTTAAAGAGGG
GCATGTAGCTAGTGACTCTGCAGCTAACTCATCATCATACTTTTGCTCATGCTAATTTGAATCTG
CAGTGAGAAATATACTAAGTAGTGAATCGAATGAATGAAAAAGAGAATCTCATAATGTTTCAGTT
CGATTTCTCCGAAAACCCTTTCGCCCAGTAGTTCAGTTGCCATGCGTAGTCCGAAATGGGCTCGC
AACTGTCGGTCAACGAAGGGGGCAGAGTAAGAGAAAGAGGGCTGTTGCAGAATGATTCAATTCTC
TATCGAATGGTCAGCATAACTTAGATCAGGGAATGAAAGTGAGAGTTAAAACGATTCATATGTTA
TAAGCGAAAGAAACTGCAAATGAAGATTCTGAGTTAGACTTTTTAGTTTTCGATTCCAGCCGTGA
AGTGTAAAACAGAAAGAAGTATAAATAAATGAAGAGGTCTATCGG



Found at i:391410 original size:23 final size:23

Alignment explanation


    Indices: 391382--391427  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     391372 TTTTCGTGAG

                                   
     391382 ATTCTTTTAGCTAAGGTTTCGTT
          1 ATTCTTTTAGCTAAGGTTTCGTT

                                   
     391405 ATTCTTTTAGCTAAGGTTTCGTT
          1 ATTCTTTTAGCTAAGGTTTCGTT

     391428 TTGGATAGGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.17, C:0.13, G:0.17, T:0.52


Consensus pattern (23 bp):   
ATTCTTTTAGCTAAGGTTTCGTT

Left flanking sequence: Indices 390882 -- 391381
ATTTTTGGCTTTGACCCATTCAAGGTGAAAAATGGTTTTGGATAAAAACAAGGGGGGAAAAAGGA
GTGATGAAACCATTAGACGGAGTTGGAAAGGACTTCGCTAATCATAATAAGGCTGGTCTCACCTT
CATACGGGGACTCGAACGATGAGATCGCTGATTCCGACCATCTTTCTGTCTTTCTTTGTCAGTGA
AGTAAATCACCCCGATGCTAAGCGATCCGCAGTCTTCAATGTGAGCCCAACCAACCCACTTTAAT
AGTAGGAGAAAGTAAAAGGCTCGATCCATGGAGTCCGTCATCGGATCCCCCATTGACAGATAGAG
TTGAAGATCTAAATCTTAAATCCCGCGCTTCATAACCGATTTCATACCATACCGATGTCATAACT
TAATTTAGGCTTTCCTCTTCTGATGTCTCGCCAAGCTTTCTTTCAATAGGTCTCTCCAGGGCATT
CGAATGCGTTTTCGGGTCTTGCTCATTTGCTTCCTTTTTCGTGAG


Right flanking sequence: Indices 391428 -- 391927
TTGGATAGGTATCTAATAACCTTCCTCATCTCTATCGTTTCCCACATCGTTATTGTTCTATTCCC
TCAAAAAGGCGGGAATCAACCCCATGCACGGAAGACGACTCACTATGCCAGCGCTTTCCCGAGGC
TCTTCAAGACCGAGATTAAAAGTTCAGAAGGTGGGGGTGAAGAAAGGGAGAAGCAATAGTTGAGG
AACCAATGAAAGAGGAGCCAGAAGTGGAGCAAGAGTCACATGGACCAAAAGAATCGGGTGGTGAA
AGGGGAATCTCTATTACACCATAAGAAGATGTTGACGTACTGGTTGGTATGTGCGATAAAAGACG
GATGAGTCCGTAATTAGTGTTACCGTTGTAGGGTTATAGTAGCCTTGAGTCTACTCATGTTCAAT
GGTATTGACTTTCTAACCTCTGCAAAGGTAATTTAGATTCCTATTGGACGATTTGTTCGTATTGA
TAAAACTACTTCGGAAGCATCCAGGGGTAAATTTGCTCGAGTATG



Found at i:395186 original size:22 final size:22

Alignment explanation


    Indices: 395158--395201  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     395148 TCTTTATCGA

                                  
     395158 ATTTGAAACTATACAATCATTC
          1 ATTTGAAACTATACAATCATTC

                                  
     395180 ATTTGAAACTATACAATCATTC
          1 ATTTGAAACTATACAATCATTC

     395202 TTCGTCTGCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36


Consensus pattern (22 bp):   
ATTTGAAACTATACAATCATTC

Left flanking sequence: Indices 394658 -- 395157
TTCGAAAGAATGTGTCCTGAAGCCATCGCAACTTACCAGACAAAGCCAAGACGAACCCCTTTACA
CGGCAAAAGCAAGGAGCATCGCGATAGGAAAAAATGAGATTAGCTCAGATGTATCCTTGCGGCTC
TATGCAAAGGTTATTAAGCCACCTATGTTCAAAGGTTATTAAGTAAGCCACCTATGTTATGGTTA
TGTAAGGGTTTATTGATCGACTATTCTAGCAATGGTTTTGATAGAGCAAGGCTTCGTAGGGACAA
GATTGAGGAAGTTAGGAAGACGGATGCCTTGTGGTGAATGTAACGAGGTAACTATTCAGAAATAC
GATATCTCCGCGACTCGTATAGAAGCTGCTCCAACAGAAGGTCGAGCCTTTTTAGCTACATTATG
TGCTTGTGATTCTAACCACGACTATCCTTTCAGAATGGGACTCCCTGCGTGGCGGTGAAGAAGGG
AGTATACGCAGGTAAGAGGGAGAGGTAGCATAGATTCTTTATCGA


Right flanking sequence: Indices 395202 -- 395701
TTCGTCTGCCCCGCGGCATCGTTTAAGGATCGAGTATGAATATTCAGTTTCAGTATAGATAGATA
CCCTGTAAACTGGTGGACAGAAAGAGCGACAACTCTTCTTTTGCTTGCGAAGACATCTGCTTGGT
TTAGTCTGATAATGGCCAGAGAGCCGCTCGCTGTGATTAACCAATTATTGCAGACTAATCTGTGT
TTCCAGCAATAAAAAGATTGAGGATCACTTTTCTTTTTAGGTTTATAGTGTGTCAGTTTCAAACT
CTGAGATCTTTGACCACTAGCATCCTCCCGCTGACGCGGTAAAAGACTTCGACTATCTCATCCGT
TCGAAAAATGATTTTCCCTACTAGATCCACAAAGGCTGGAGCTTATGACTGAAACCTAGGGATTC
TCGTGATTACCCTAGATTAGGGTATGCTAAACAATCTCGGTGTAGCGCCCACGTTCGGCCTTTAC
TTCTAACCATCTGCTTTCTTTTTTTTTATATAGCAGCGCCCCCGG



Found at i:402653 original size:27 final size:27

Alignment explanation


    Indices: 402623--402680  Score: 116
    Period size: 27  Copynumber: 2.1  Consensus size: 27

     402613 AGGCTCCGTT

                                       
     402623 TAGGAGTAAGGGACCTATGGGTATTTA
          1 TAGGAGTAAGGGACCTATGGGTATTTA

                                       
     402650 TAGGAGTAAGGGACCTATGGGTATTTA
          1 TAGGAGTAAGGGACCTATGGGTATTTA

                
     402677 TAGG
          1 TAGG

     402681 TAAGCCGTTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   31  1.00

ACGTcount: A:0.29, C:0.07, G:0.34, T:0.29


Consensus pattern (27 bp):   
TAGGAGTAAGGGACCTATGGGTATTTA

Left flanking sequence: Indices 402123 -- 402622
AAGGGCTTGCGGTTCATTATAAAAAATATCAGTGAACTATTGAAGCTATCGAGAGAGTACCAAAT
GCTGAAGGTAACGAAGGTTAACGACTTTCGGTAGACGCGGAGCCAACGAGTTCAGTCGAACAGCG
TAACGAGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGAAAGCAAATAGA
GCAGAGAGCTTACCGTTTGTTTCTATTAGATAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAACT
AAAGGGGTAACCTTGCTGCTTACTTGCTATATCCCCGCGTTCTTGCACTGCACGGCTCGTTCTTC
GAGCCCTGCTTCCCCCTCTCCTATTACCGTCCAAAACAGGCCGTATGGAGTATAGCCAAGTGGTA
AGGCATCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCC
GAGATAGTCAAAAGCTGACGACTACAGGGGACGGTAGGCTCCGTT


Right flanking sequence: Indices 402681 -- 403180
TAAGCCGTTCAACCAGCCATCTAGGTCCCACCCGACCGCAGTGTAAAGGTTTCAGTCAGTTAGCT
CAATCATAACATAAACCAACGAGTGGGATAGACGATTCTCCACCGATGGAATGAGGAAATAGCAA
ATCAGATCCTAGCTAGAGAGCGGCCCCTTTCGAACCAGAGTGTCTTCACTAGGGGGAATTGGCTT
CTATTCGGTATTTGGTTAGTAAAGCTTTGCTTACCTTAAAATAATTCAAAGAAAGAAAGTCAAGG
GTGGTCTACGATCAGGAAAGAGACTCTGAACTGAAAGACAAGTTTCGGGAGGGAATGCGGTAAGC
TACACCTATGCAGTCACAGGATCTTTTGAATTTCAACTCCTAAGTCCAAGGTTTGAAGATGGCGA
TGGTGATTGAGCCGGTGCTGAAATTGCCTGAATTTGATAAGCCATTTTCGGTTGAAACTCTCGCC
TCTCGCAGAGACCTTGACAGGCTGAGAACTTAACGGTGATGCAGT



Found at i:413399 original size:29 final size:29

Alignment explanation


    Indices: 413357--413414  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     413347 CAACCGGAGT

                                         
     413357 TTAATCCGGGGACGGCTCTTATTGAATCC
          1 TTAATCCGGGGACGGCTCTTATTGAATCC

                                         
     413386 TTAATCCGGGGACGGCTCTTATTGAATCC
          1 TTAATCCGGGGACGGCTCTTATTGAATCC

     413415 ACGGACGGGT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31


Consensus pattern (29 bp):   
TTAATCCGGGGACGGCTCTTATTGAATCC

Left flanking sequence: Indices 412857 -- 413356
GGTGAGGAAGCCGATCAACTGGCTAGGAGTTCCAAGAAGATCAAACCGTCGGGTCCGGAGCATGG
TGCTGTAGGCGGGGAGTCGAGTAACCCCCCAACGAGATTGTCTTTCATAGATGCTATGATTGGTT
CGAACTCTCCCGGTGTGTATCGGCATGATGAATTTTGAGTTTTGGGATCGGATGAAGGACTTATA
CACATCTCCACTATGTAGAATTGTCCAAGGATATCTCTCTCAGATCGGTTTAAGGCTAGCATCCG
ACGCATATGGGAGAGATGCATCATAGTCAAGCTGCTTGTCCGGAAGATTTCTTACACTGTGCTTA
ATGACAGATTTCAACGGTTATGGCACCTTAAGGGTGATATGGAGTTAATTGATATTGATGATGGT
TTTTTTCATTGTGAAGTTGGATTCAGAGTAGGATTTGCGGTTTGTTATTGATGAAGGACCTTGGA
CCATCTTTGGTCACTATCTTACGATGAGACCTTGGCAACCGGAGT


Right flanking sequence: Indices 413415 -- 413914
ACGGACGGGTTACCAAGCAAACTTATAGTGATATTGTCAGCAAGGCTCAGGCTCGACTTCTTTCC
AGGGGTAATCAGCATCTTTCTATGGACAAGCTTGAGTTAGGCATCAAGTGACTCGACAAAAGTAG
AGGGGCTGATGAGAAGGTTCTTCCCTCAACTTGCTTGCATGAACTAATTTGTCTGCTTACCGGCC
TTTAGAAACCGAAGTTTCATACTAGGACTGCTAATCAAGTACTTCCCCTTCCTTACAAGTTTAGT
CTTGTTACCGCCCGCCCCTATTTGACCAATCTCTGGGTTAAAAGTTCAAAGTCGTATAATTGGAC
GAACTCTTAGCCGCTTTCGCTCGTGCTTGACACACCTCAGCTCTGGTCTTCCCCACATGTTCTAC
CACTGTTGATTAGAACGCTTTTCAATTCACCTGCACCCGATATCCCCGGGTTCCCCTTCGTCCCA
CGGTGAAACCCCGACCGTTCGCTGCTACGCTACTCAGCTCTTTCG



Found at i:414164 original size:15 final size:15

Alignment explanation


    Indices: 414144--414174  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

     414134 GATTGTCCGA

                    *      
     414144 AGATAATGTAGGATG
          1 AGATAATGGAGGATG

                           
     414159 AGATAATGGAGGATG
          1 AGATAATGGAGGATG

             
     414174 A
          1 A

     414175 TTGTAGAAAG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23


Consensus pattern (15 bp):   
AGATAATGGAGGATG

Left flanking sequence: Indices 413644 -- 414143
TCAAGTACTTCCCCTTCCTTACAAGTTTAGTCTTGTTACCGCCCGCCCCTATTTGACCAATCTCT
GGGTTAAAAGTTCAAAGTCGTATAATTGGACGAACTCTTAGCCGCTTTCGCTCGTGCTTGACACA
CCTCAGCTCTGGTCTTCCCCACATGTTCTACCACTGTTGATTAGAACGCTTTTCAATTCACCTGC
ACCCGATATCCCCGGGTTCCCCTTCGTCCCACGGTGAAACCCCGACCGTTCGCTGCTACGCTACT
CAGCTCTTTCGCCTCAAGTAAAAGGCGGAGGGATACTCTCAGGGGAGAGAAAGACGCGCTTTTTT
CACCTGACTACTATCTGTCGTAGGAGGCACAATAAAATGACTATGTTGAGGGACTCGGAAGGTAT
GTGGGTTCACGATACTGAGAGACTGAAGCAACTAGTTAATGACTTTTACACAAGCCTTTTTTCGG
TACAAGAGAATGCCGAGGGGGAGAGTTTAGATCTTGATTGTCCGA


Right flanking sequence: Indices 414175 -- 414674
TTGTAGAAAGCTTGACCTGCTTATTGGGATGGAGGAGTTACGTGTGGCCCTTTTTCAAATGAAGC
CGTGGAAAGCTCCGACCATTGTTGGTTTCCAGGCAGGTTTTTATCAAGTTTGTTGGGAAGCAACA
AAACAGGCCCTGTTCGATATGGTTACTGCGGCTTTTGCGCAGGGTAATCTGCCTCCAGACTTGAA
TGAGACTCTGCTTGCTTTGATCCCAAAAGTTTATTCTCCTGAGTATGTTAAGCAATTCAGACCTA
TCAGTTTATGTTGTGTGGCATATAAATTGATCACAAAAATTATTGTGAATCGCATACGACCCCTT
TTGAAATATCTAGTAGGACCTATGCAAGTTAGCTTCGTCCCTGGAAAGCAGGCTACAGATAATAT
ATTCCTAGCGCAGGAGTTAATACACACCATAAAGAAGACACGTAGCAAAAACAGACTGATGGCTA
TAAAAATCGACATGGAGAAAGCATATGACCGTGTCAGTTGGGATT



Found at i:424833 original size:29 final size:29

Alignment explanation


    Indices: 424791--424848  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     424781 CTCTGACATC

                                         
     424791 ATAAACCTGAGGACTTTTCTATAGGTTTT
          1 ATAAACCTGAGGACTTTTCTATAGGTTTT

                                         
     424820 ATAAACCTGAGGACTTTTCTATAGGTTTT
          1 ATAAACCTGAGGACTTTTCTATAGGTTTT

     424849 CGGGTACTCA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41


Consensus pattern (29 bp):   
ATAAACCTGAGGACTTTTCTATAGGTTTT

Left flanking sequence: Indices 424291 -- 424790
ATTGGTTTTTGGAATTGGGTTATCTCAAGAGCGAGTAGAAACTATTTCACATATTGAGCTGGAAC
GTTCGAACAGGAAGAGTCCAATGGATGAAATAGGCGGATAAGGGATTGCTAGCTGCACGAGAAGA
CCATTTTTTGGGGTTCCTTTGCACGACATAGCACTTTTGTTTAACCCCGGGATTGCGAATTCCGA
TATTAGTGAGAAAGGCTTTCCGTTCATACTTGCTTTCTTTCTAGCTTGTAGCTAGAGAGCGGGGT
AAGGTATTGAGTCTTCAGAAGAGAATTCCGTATTGGATTCCGCTTTCCCAGTTTCATGATTTGTA
GTTACGATTTATCAAATAGAACAGCTTGAGTAAGGAAGGGCTTTTGTCTCTTACATCACCTTTCC
CATTATCTATCGAATACGGGTCCTTTTCGGGATGGTACTTACTTTCTATCCGCTACGCTTAGAAC
AGCCCGAGCATTTCCCGATTCTAGTGCAATGCAACCTCTGACATC


Right flanking sequence: Indices 424849 -- 425348
CGGGTACTCAAGAATTTAAGCTTTTGATACGGAAAACTATAAACTAGATTTATTCTTGAACTGAA
AGGCGAAGAAGGTTGACCGCCTCGTATGAATCACCGGGAATATCATCTATAGCTCTTTCTATTGA
ATCTGGTGAACCAATCTCTAACTGAATGAAAGAAATAATCGTTAGAAAAGACTGAGACTGAGCTT
AGCCCACCCATGGGAAATAACAAAACAAAAGACTGGCTTTCTTCTGTTGAAGGTTCTATTCCTGC
TCGAGCTGATGTTGAAGGTTAGAGCTCCTCGTTCTTTCCCTTCCTATCTCTTCTAGTCTTTCCTT
CCCTATATAGAAAGTGAGAATTACTATCTTTCTTCCTTCGTAACCTTTCCAAGACAGGGCTAGAA
AGAGGGATAGTGCTTTAATTGATTGAACAGCACTTGATTTAGTCTTTGCTGAACGAAAGGCTGGA
TCACTCGTAGGAGATGAGCTTAGAAGAAAGGAATAAGAGGAGATT



Found at i:425615 original size:25 final size:25

Alignment explanation


    Indices: 425586--425637  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

     425576 CAAGCACCAA

                                     
     425586 CCAGAAGCGAAATCCTTGATTTATT
          1 CCAGAAGCGAAATCCTTGATTTATT

                                     
     425611 CCAGAAGCGAAATCCTTGATTTATT
          1 CCAGAAGCGAAATCCTTGATTTATT

              
     425636 CC
          1 CC

     425638 GGACTTGGGG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31


Consensus pattern (25 bp):   
CCAGAAGCGAAATCCTTGATTTATT

Left flanking sequence: Indices 425086 -- 425585
TCTGTTGAAGGTTCTATTCCTGCTCGAGCTGATGTTGAAGGTTAGAGCTCCTCGTTCTTTCCCTT
CCTATCTCTTCTAGTCTTTCCTTCCCTATATAGAAAGTGAGAATTACTATCTTTCTTCCTTCGTA
ACCTTTCCAAGACAGGGCTAGAAAGAGGGATAGTGCTTTAATTGATTGAACAGCACTTGATTTAG
TCTTTGCTGAACGAAAGGCTGGATCACTCGTAGGAGATGAGCTTAGAAGAAAGGAATAAGAGGAG
ATTCTTAAGAGATCCCTATGCACATCACTTATACTCAAATCTTGATGCAGATCGATCTACCTATG
AAAAGGAATGATAGGCTTCGTGAAACCTAATACTTGAAAAGTGAGTTGATTCTGAAAGTAACGGG
TATACCAAGTCTAGCTACTGCTGAACCTCTATGCGATTTAGCGAATGAATCTATAATCGAGCCTC
AACTTGCTAGCACCTAAACCAATGCACCCGAAAAGCAAGCACCAA


Right flanking sequence: Indices 425638 -- 426137
GGACTTGGGGAAAGAACTTATCCAACTAACTCTCTAGTTCGTGGAAGTAAAATCTCTTACCCATA
ACCGTATCCAGGAAAACCCCTTTAATCATCTGCTTTGTAGCTGGGAACTATCTCTTCACTGAACT
TGGATGAAGGGTTTAAGGCTCTGATTGGATAGCATGTTCTAGTTGTTATCTTTCTTCCCTATTCT
TCCACCGATTAACTCTTTTGAACTCCTCTCTTTCTTTTCTTTGTTCGACTGGGGAAGAGCGTAAA
GCAAATCGAATCAATAGGTAGAATGTAAACAAATGGTTTCCCACTCGCTGCTAAGCAAAAGCGCC
TATGAGAAACTAAACCTGAAGTGAAATCCTTATACAATCTTATCAGCCTCAGGTGAATAAAGCAT
GTTCTTCTCTCATCTTCTTGCATCTCCTTCTAGGCCTTTCTTCTCTCGGGTTTCAGGTGCTCGCA
TCCCTCTTCTCTTACATTACCAGATTCAGATGGATGTTCAATAAG



Found at i:430563 original size:18 final size:18

Alignment explanation


    Indices: 430540--430575  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

     430530 TATATCTCTC

                              
     430540 TCTAAAAGATGTCCCTAT
          1 TCTAAAAGATGTCCCTAT

                              
     430558 TCTAAAAGATGTCCCTAT
          1 TCTAAAAGATGTCCCTAT

     430576 AGTGGGTATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33


Consensus pattern (18 bp):   
TCTAAAAGATGTCCCTAT

Left flanking sequence: Indices 430040 -- 430539
CCATCCAATGCATTCTTTTCGATGATTGAAAGAGGTAGACTGAAGACCAACCAAAACATTGAGAT
CAAGCATGTTAGAAACATGAACGATAAATAGAATCGATACGAATATCTACTCAACAGAGATTCCC
AGATTCACCTCAATTCCTTCTATTGCGATATTTATTGACGCATTTGAAACCCTTTCCCAGCTTAT
TTGCTTTTGAGTCGAAGCTCTATAGAGATGGATCTCTTCTTGAGAGCACCCTTTCTTTGATAACG
GGAAATCTCAGACTTCTGAAGCCCGCTGTAAGCTGACTCGATACGGACTCGCCACAAAAAGGTGT
CATCGGGGCATTCCTCTTCTGGTTTGTCGTCGTTGCTTGCTCTACTCCCTATTCTTTCTTGTAGC
CTAGTAGGTGTGGGCTCTTTCTTGTTCTTCCTGTTATGTGGCTCTTCCCAAAATCCCTGACCGAC
CTGAGAACCTTGGCTGATTCGCGTAGGGCGAGCAGTATATCTCTC


Right flanking sequence: Indices 430576 -- 431075
AGTGGGTATAGACGCGCTCATAAACAGAACCAGACAAAGTAGAATCATTCATTAAAGTGGGCTCG
CTAGTGCGACTTGGGAGACGCGGGATATAAGGGCTGTAATCGGAGAGCTGAGCCGATAGGGAAGA
TGTAAGCGCAGCAGCGAAGTTATTGACGAGGTTCTTATTGCTGTGTAGCTGCGAACGGGTATAAG
TTATCGTTTTTATTTTCTAGATAATTGAATCTCATAATGAACTACAACAAGTCGGAAATCTGAAA
ACCTATCATCAATGTCTGCTACGAACCCGCTGAAGATTGCGCTGAAAGATAGACTTCGGGCTAAC
GATGCGAAGATGCCTTAGAAGTAGCGGGAGCAAGCCTTAAAGATAGAGAACCTAAAAACTAGAAA
GAGTTAAACCGATAAAGCAGCATCAACTGTCCGAAGGGGATGAGCTGCTACGCAGCGAAGAGGAA
GTCCATGTCAGGAAATTCAATAGCTCTCGGGTATAGGTCATCAAT



Found at i:432002 original size:15 final size:15

Alignment explanation


    Indices: 431982--432010  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

     431972 AGAACCCCGA

                           
     431982 TAGTGTTTGGTTAAG
          1 TAGTGTTTGGTTAAG

                          
     431997 TAGTGTTTGGTTAA
          1 TAGTGTTTGGTTAA

     432011 AGAATCCATG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48


Consensus pattern (15 bp):   
TAGTGTTTGGTTAAG

Left flanking sequence: Indices 431482 -- 431981
TTCTTTGTCTCTCCGGGTTTACCAAAGAGTGTCCTGTCGCTGCGCCCTAGCCTAATCAACCAAAC
CGACGACGAGATCCGACTTAACGAGAGCGTTGCGATCACGCGTTAGCTGTGCTCCTGGCGTAGAC
CAAGGGCGAACACTCTATGAATATCATATAGAAGAAATGACTAGAAGTGAATAGGATTGATTCTA
TTAACTTGTAAATGGCTCTCGTGTCTGTCTTGCCTACTAAGCTATTCCCTACAAATGAGACTAGT
TGAATGGAATGGACCAAACAAAAGTGTAAGAGCTGGGTGACTGATCCTGCCATAATGTACTCCCG
AGTTGGGTCATGTTCACCACTTTGGTCGGAGGCTCTTTTCGGAGGATCCGGAGGGTTCATAGCGA
TCTGATTACAAGACCTCTTTCAGTCGTGCCTCAGCTTTCCGAAGAAAGATACAAAGAAAAAGTGA
TTCTAATATAGATAGATCTGGCCCTTGGGTCCGTTAGAACCCCGA


Right flanking sequence: Indices 432011 -- 432510
AGAATCCATGGGGATATGGCAGCTACCGCGCGATAGTTCTTTCGTATTTTCTTTCGTCTACGCTA
CTACTAATATAATAGTTGTACTCTTGCGCGATCATGACAGGACTCGAGGAAGGATCCATATGTAA
GTCTTCGTCTAAGTTCTGAGTTGAATTCCAAGAAGGTTCGGATCGCCTTTCGCCGGGTGTGATCC
TAAATAGCTAAACAGGTTTGCTTAAACCATATGTTCGGTATTGTCGCTAAATCGGTTAATAGCAC
AGGGAAGAGAAAGACGGACTGTCACACTCGAACCCAGTTCGCTGCTCACCTCTATCGTGTACAAA
ATCTGTCATGCCGACATCCCTACCTGTGGTAGAAGCGGACACTCATAGGAAAGGGTCATTACAAT
CTCGGAGCTGGTTAAGACACATCTCGTTGTTTTACCCTAGTGCTGTTCGACTTACTAATTCAGAC
CGTCGAAGAAAATTCCCCGTATTCCCACTCTCATGTGGAAACCTC




Done.