Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: KT894205

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 1829341
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29

Warning! 14 characters in sequence are not A, C, G, or T


File 4 of 5

Found at i:1307944 original size:16 final size:16

Alignment explanation


    Indices: 1307923--1307954  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

    1307913 ACCAGGGCAA

                            
    1307923 CTAATGTCGAGCATAC
          1 CTAATGTCGAGCATAC

                            
    1307939 CTAATGTCGAGCATAC
          1 CTAATGTCGAGCATAC

    1307955 GACGATGCCG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25


Consensus pattern (16 bp):   
CTAATGTCGAGCATAC

Left flanking sequence: Indices 1307423 -- 1307922
TGGATACGCGAAGGAAATCGCTCGGATGTTCCCCTAACCCAACCCGGGAACGGACCGGAGGGAAC
CGCAGCATGGGGAATGTCCGCGTCTCGTCGCAAGGCTAATCTTTAGTTGTGGGTCATAGGGTGGG
TTTCGGGCAGGCAGCTTTATCTGATCAAGGGCCGGGGCACAAGGGTTCTGGTACTATCCAGGTGC
GAAGAACCCCGGAGATAACTGCAATGAGCAGAAATCTCACTCACTGGCCTAAACGACGAGCAAAC
ACTCGAACGTGAGAGCAAGGGATCACCCAACAAATGGACGAGCTCCAGAGAGAGGGAGGGAAGAT
CTTAAGGCTTTCAGAAGAGTGGCGGTCCGAATCTTATCTGAACTGCGATAATAACTGACTAAGCC
ATGCCATAAGGGTCATTCTCCAAACGGGACGGGGCCAAGCCTTTAGGTTGTTTAAGTAGGTTGGG
TGACAGATCGGCCATAGGAGTACTCCGGGATATAAACCAGGGCAA


Right flanking sequence: Indices 1307955 -- 1308454
GACGATGCCGCCCGTTTTCATTTCATGGAAGTCCCCGGCAGAGGAGAGGGCTGTAGGTGATGGCG
CGTTTTGCTTCTTCTCTATAGAGGGGCGCTAAAATCATTCCTATTTGTTCGTGCATGTCATTTAG
TATAGATGAATAAAAGAAGGCGGTTTTCCGAAAAGGAAGCAGCCCAGCCTCCTCAAGAAAGCTTT
GCTTGGTAGGCGCTGCCTACTCACTCGGACAATGCTCTGAACACAAGAGTGTGCAGTTCCGCCCC
CTTCTCTCATGCTGAGTCACAGGCAGCGCCTCGGAAAGCACGGGCGAGCTACATGCAGGGAAACT
TGCACGTGTGGTTCTGGCCGGGTACCCCGGTATACTGTACTAATATGTGTAGGTCCCCGTAATTC
GAGTGAGATTGTCATGGCGCAAAAGCAAATATGGTCTGGTATTCCCTTATTTCCTGTATTGGTTA
TGTTCCTCATTTCTTGTCTAGCAGAAACTAATCGAGCTCCGTTTG



Found at i:1312203 original size:25 final size:25

Alignment explanation


    Indices: 1312175--1312224  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1312165 CCTGAGCCTT

                                     
    1312175 GCTAAGAATATCACCATAGGTTTTC
          1 GCTAAGAATATCACCATAGGTTTTC

                                     
    1312200 GCTAAGAATATCACCATAGGTTTTC
          1 GCTAAGAATATCACCATAGGTTTTC

    1312225 TTAGTCACCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Consensus pattern (25 bp):   
GCTAAGAATATCACCATAGGTTTTC

Left flanking sequence: Indices 1311675 -- 1312174
CTTAATCCAAGTGGAGGCAATTTTCCGTTGCTTATCTTTACTCCCAAGCCCATACACAGTACATC
CCTTCCAAGTAAGATGCTACGCTAAGTATAGGAGTCAGTAGACTTACTTGAGACTGCAAGAAAGT
CATGGTGCTGTAAGTACTTACTCCGTAACACTTCTACCCAAAGAGTATCCGTTACAAAAAGTATG
TGCCACCCCAATTTTGAAAGAAAAGCGAGATTAGCCTTACGCACATCTCGGATGTTGAGACCCCC
TTGCTCTTTGTGGAGGCATACTTTCTTCCAGGGAACACCATGTAATTTCTTGTTGCCAGAGTCGT
TACCCCATAAGAATTGTCTCATCAGCTTTTCAAGCTCAGTAACTACATGATTGGGTAAATAAGTT
CTTTGCATAAGATAGGAGGGTAAAGCACTAAGAACAGACTGTATAAGAACCACCCTTTCTGCCAT
AGATAAGTGTTGATTTCCCCATGAGAGAAGTCTTGCCTGAGCCTT


Right flanking sequence: Indices 1312225 -- 1312724
TTAGTCACCCTACCGTGGATCATGGGAGCCCCTAGATACTTTCCAAAGTCATCTGTCAAAGTGAT
TCCACAATGGTTTCTATCTATTCTGCCGAACTTCATCATCAATCATATGTCCTAGTTTTTCCAAG
CATAGTATGAAAAGATAAGTAGACAAATCCCCTTGGCGGATACCTCTTGTAGGAGAAAAGAAAGT
AAGTTGTTCACCATTCCAGATCAAAGAGAAAGTGTTGGTGGTAACAATATTCATAACGAGTCTAA
TCCAAGAGAGAGGTTATAAGACCCCCAATACTTGCTGCAAAAAACTCCATTTGATCCTGTCATAT
GCCTTCTCCAAATCTACCTTGATGGCAATTGCTCCATTTTTCCTCTTCATCTTTCGCATGGTATG
TAAGGCTTCTTGAACTACAATGATATTGCCCGTGGTGTGACGACCAGGAAGAAAGTTGGATTGTG
TTTTATTTACCAGTTTGGATAGGAAAGGACGGAGCCTATCAAGAA



Found at i:1317814 original size:26 final size:25

Alignment explanation


    Indices: 1317778--1317828  Score: 84
    Period size: 26  Copynumber: 2.0  Consensus size: 25

    1317768 GGGGATCCCT

                         *            
    1317778 AAACACAACGTTATCCGCATTTGGAC
          1 AAACACAACGTTAGCCGC-TTTGGAC

                                     
    1317804 AAACACAACGTTAGCCGCTTTGGAC
          1 AAACACAACGTTAGCCGCTTTGGAC

    1317829 TCCCATAGAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  25    7  0.29
  26   17  0.71

ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22


Consensus pattern (25 bp):   
AAACACAACGTTAGCCGCTTTGGAC

Left flanking sequence: Indices 1317278 -- 1317777
AAGGCAGGACGAGAGAGAGGACTATTAACAAGACTACCACCCCTAGCTACAGTTACAGGTACGGA
TTGGAAAGGATTCAACCATTACTTAAAAAAACTTAGACTACAAAACGAAAAGGAGGGCACTCATT
ATCCTCAATAGGAAGAACTCCTTAAGAGGAGGTTGGTTTTGCCAAGCCTGTCTTTCTCTCTGAAA
GAGGGCATATGGGGTCAGAAAGACTATTTGTTGGGCTAATATGCTAATCCCCTACCGCTTTGGCT
CGCTACTGACCTATATAGCTTTCCTGTACTGACCTGTATAGTCAGTGCCCGGATACAGCATGGGT
TGTGCCACAGGTTCCCATACCCTTCACTCGCTCAAAGGGGACATACAGTCGAATCACATCTCTCA
AGAACTGGGAGTAGACTATAGGACGGTAGCATTGTACTCATTTTCTGAACGCTATAAGGCCAATA
AAAGGCTTTCATCGATTGTTAGGCATGTAGAATAGGGGGATCCCT


Right flanking sequence: Indices 1317829 -- 1318328
TCCCATAGAATTGGCTTCATAGTCTCACTCAACAAACTAGACTAGGGGTCTTGTAGAGCCGGAAA
GGAACCATTAGGTCACTCAAACTAGAAAGGAAGAGATAGACGAGAGGGGTGCAATTCCAATTTCC
CCATCTTCCGCTCCTCATCAACCAGTCCGAGTATAAGTGGTAACCAAAAACTCTGTATAAGTGGT
AACCAAAAACTCTTAATCGACCTCTAGCCACAAAAAAACGGAGGATATTGGGGTGACCCTAGTCT
CAAGATGTCCGAGAAGTACCTGGTTCCACAGGCAAATAGAACAAAAACCTTAATCCGTCTGTATC
GCCCGAGAAGAGGTAAATCTACGTCCATGGACGACAAAAAAACCCAATCCCTTTTGCTTTGCTAG
TTCCGTCCGGAACCGCTTAAGGTAAGGGCTAAAAGGAAATCTTTCCTTTATCTCTCGGACCTAGA
GTTGTTGCGGATATGCGACATACTATCATCAATAGAATTCCGCGG



Found at i:1318017 original size:24 final size:24

Alignment explanation


    Indices: 1317989--1318036  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1317979 ACCAGTCCGA

                                    
    1317989 GTATAAGTGGTAACCAAAAACTCT
          1 GTATAAGTGGTAACCAAAAACTCT

                                    
    1318013 GTATAAGTGGTAACCAAAAACTCT
          1 GTATAAGTGGTAACCAAAAACTCT

    1318037 TAATCGACCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25


Consensus pattern (24 bp):   
GTATAAGTGGTAACCAAAAACTCT

Left flanking sequence: Indices 1317489 -- 1317988
AGAAAGACTATTTGTTGGGCTAATATGCTAATCCCCTACCGCTTTGGCTCGCTACTGACCTATAT
AGCTTTCCTGTACTGACCTGTATAGTCAGTGCCCGGATACAGCATGGGTTGTGCCACAGGTTCCC
ATACCCTTCACTCGCTCAAAGGGGACATACAGTCGAATCACATCTCTCAAGAACTGGGAGTAGAC
TATAGGACGGTAGCATTGTACTCATTTTCTGAACGCTATAAGGCCAATAAAAGGCTTTCATCGAT
TGTTAGGCATGTAGAATAGGGGGATCCCTAAACACAACGTTATCCGCATTTGGACAAACACAACG
TTAGCCGCTTTGGACTCCCATAGAATTGGCTTCATAGTCTCACTCAACAAACTAGACTAGGGGTC
TTGTAGAGCCGGAAAGGAACCATTAGGTCACTCAAACTAGAAAGGAAGAGATAGACGAGAGGGGT
GCAATTCCAATTTCCCCATCTTCCGCTCCTCATCAACCAGTCCGA


Right flanking sequence: Indices 1318037 -- 1318536
TAATCGACCTCTAGCCACAAAAAAACGGAGGATATTGGGGTGACCCTAGTCTCAAGATGTCCGAG
AAGTACCTGGTTCCACAGGCAAATAGAACAAAAACCTTAATCCGTCTGTATCGCCCGAGAAGAGG
TAAATCTACGTCCATGGACGACAAAAAAACCCAATCCCTTTTGCTTTGCTAGTTCCGTCCGGAAC
CGCTTAAGGTAAGGGCTAAAAGGAAATCTTTCCTTTATCTCTCGGACCTAGAGTTGTTGCGGATA
TGCGACATACTATCATCAATAGAATTCCGCGGAGAATGGCCATAAGCAGGTTTTCTGTTCGATAC
TCTTTCAACATGGCGACTGTCCTTCCTGTCTTACAAGCGAGAAAAGCCCTTATAGAGAGGCGAAG
AAAGCAGAGCTAGCTACTAAAAGACAAGAGCGAATATCAGACAATATAGATTATGGTTGTATCAC
TGAACTTGGTTCACTGAGTCTAAAAGAAGGAACCTTCTATCACGA



Found at i:1320349 original size:17 final size:17

Alignment explanation


    Indices: 1320327--1320361  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

    1320317 CGTAGCGTCG

                             
    1320327 ATCTTACTTTCTTTAAT
          1 ATCTTACTTTCTTTAAT

                             
    1320344 ATCTTACTTTCTTTAAT
          1 ATCTTACTTTCTTTAAT

             
    1320361 A
          1 A

    1320362 AGGCGAAGTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.26, C:0.17, G:0.00, T:0.57


Consensus pattern (17 bp):   
ATCTTACTTTCTTTAAT

Left flanking sequence: Indices 1319827 -- 1320326
AAGGTCACGGAACCTTGGTAATGTATGTCCCCTAATCTTGACTGCCACTTCCATAGTTTAGCATG
GTAAGTTTCCACTAGGTATCTCCATAGGTCGGTCGCACATTCAACATACCTAACCCAATATTCAA
ATTGTTCAAACAAAGGTGGGTCCTTGTATAATACTGGCACGAGAAAGTAGACAAGCTACTCAGCT
GACCTTCTGTTCCTTTAGTCGGGCTGGAATCGTCACTAGGGCTCTCGTTTACTAACACTTTTTAT
TATTCCTGTAATTAAATTAGGGGGAATGCGCTACGGGATGGGGGAAAGTGAGGAATTGATTCTCG
ATAGAGTTTCTTATGAGTATAGATTCATATCTTCTACTTGACTCAGCGAGATATGAAGGTTCCGC
CCTTGTTACCGCTTCCGCGCAGCGTGGGAAAGTGTGAGACAGATGTTCGGTTCTCCTCGAGATTT
GATCCGGGGATGGAGTCCGAGCGGAGGTATCATAGCGTAGCGTCG


Right flanking sequence: Indices 1320362 -- 1320861
AGGCGAAGTGCTTCCGTCGAAAAGAACAGGTGGTGGAAAGCTGATGACTCCCAAGAGCTGGACGA
ATACACCAGCTTTGCCTAACATGTGAAATGGGTGCATAAGGCTCGTTGAGAACTGTAATACAATC
ATGAAGTTGAAAGTAGCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGG
ATAGATCAAGAAAACTGCGGTATCAGCTGAAAGAGGAGCTGAATATGCAAGAGCGATCCAAGGGC
GCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATGTAACAAGTTAGAACAAGTAAAAAG
TGTAGAACAATCAGCTCATAAGGACCGTCATTGTATAACCATTCATCAACGGATGCCGCTTCCCA
GATCGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGTCACCGGAAATGATATTGT
TTCCGTAAAGTAGAGATCCAGAAAGAGGTTCACGAATACCATCAA



Found at i:1320687 original size:17 final size:18

Alignment explanation


    Indices: 1320662--1320696  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

    1320652 CACGATCCAT

                *             
    1320662 GTAACAAGT-TAGAACAA
          1 GTAAAAAGTGTAGAACAA

                              
    1320679 GTAAAAAGTGTAGAACAA
          1 GTAAAAAGTGTAGAACAA

    1320697 TCAGCTCATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.54, C:0.09, G:0.20, T:0.17


Consensus pattern (18 bp):   
GTAAAAAGTGTAGAACAA

Left flanking sequence: Indices 1320162 -- 1320661
TTATGAGTATAGATTCATATCTTCTACTTGACTCAGCGAGATATGAAGGTTCCGCCCTTGTTACC
GCTTCCGCGCAGCGTGGGAAAGTGTGAGACAGATGTTCGGTTCTCCTCGAGATTTGATCCGGGGA
TGGAGTCCGAGCGGAGGTATCATAGCGTAGCGTCGATCTTACTTTCTTTAATATCTTACTTTCTT
TAATAAGGCGAAGTGCTTCCGTCGAAAAGAACAGGTGGTGGAAAGCTGATGACTCCCAAGAGCTG
GACGAATACACCAGCTTTGCCTAACATGTGAAATGGGTGCATAAGGCTCGTTGAGAACTGTAATA
CAATCATGAAGTTGAAAGTAGCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCG
ATTGGATAGATCAAGAAAACTGCGGTATCAGCTGAAAGAGGAGCTGAATATGCAAGAGCGATCCA
AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCAT


Right flanking sequence: Indices 1320697 -- 1321196
TCAGCTCATAAGGACCGTCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAA
AAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGTCACCGGAAATGATATTGTTTCCGTAAAG
TAGAGATCCAGAAAGAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGAAATGAGTGCGA
TAATAAATACAGAAGTTGCAGAAAATAAGGTAGGGATCATCAAAAGACCAAACCATCCGATGTAA
AGACGGTTTTCAGTGCGGGCACGTCAAGGGAGAAAGACATGGCTGTGGTACAGGTCGATATGGAG
CGAACTACCTCGCTACCATCTGATAATAGGGATGGCAAACCACCAGATAGATGATGAATCAAAAA
TAATCAAGCACAAAGGACCGGAAAAAGGCATGGTAGATCCAGAATGGTTCGAGAAAGAGTATGAG
AACCCATCTCGTACAGAACTGGTACTCATTACTGCACACTTCCGG



Found at i:1323031 original size:19 final size:19

Alignment explanation


    Indices: 1323007--1323045  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

    1322997 TAAAGCGAAC

                               
    1323007 ATTACACTCAATGATTCTA
          1 ATTACACTCAATGATTCTA

                               
    1323026 ATTACACTCAATGATTCTA
          1 ATTACACTCAATGATTCTA

             
    1323045 A
          1 A

    1323046 AAAAGCCACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36


Consensus pattern (19 bp):   
ATTACACTCAATGATTCTA

Left flanking sequence: Indices 1322507 -- 1323006
AACCCGAAATTGCCATCGCAAGAAGCACGAACGGGCACAGAAGCAATAGGCACAAGAAAAAGAAA
GTACTCGCGAGCGTAGTTGTAAGAGCGTAAAGCAACTCGAAGAAAGGGGGAGGAAGATCTGTTTA
TGTTAAGGGCCTGGGTATGTTCTCTCGCCCACCCTGTAAGATCGATAGCATGAGGAGGGGGGTGC
GTTCTCAGAGAGAGAGAGAGGGAATCATCTATCCAATTCCTATGTTCACAGAGGGGCTAAAAAAG
GGAGTGAGTGAAAAGAATGCACTACATGGATGCTATTTGGACCCTACGAAAGTTAGCCCCGAACT
GGTCCGTACCAAGCAAGAAGATTGGCTTCATTTGCCATCAGAAGAAGCTCATGCTCAACCGATCA
ACTGAGCCCAAACTCCTCACACTAGATGATACTAACTACTACCTGCGGATAAGTTCCTTTAAAAT
ACCTTTCCTTATATAGGCATGGGAAGAGATAAACTTAAAGCGAAC


Right flanking sequence: Indices 1323046 -- 1323545
AAAAGCCACTAAGGCTTGTCTCCCACTTGAAAAAACAAGATGCTCATCCGAATTGAGCCAAGACA
AAAGCAAATAATAGCACTATTACAAGAACCTTGTGACACTATTCCAACAACTACGATAGGTGTCA
CGTTATTAGCACACAACTAAGAATCGGACTTTTGAAATCATAATAGCTGAGGAGAAAGGAAAGAA
GAGCTTATTTCAAGCATTCCCCTTGAGCCCGAACCACGTGGTGAAAGCTAGCCTTCCTCAATCCC
AGTCGCATTCGATCTAGAATTCTTCTTCCCCAGTGATGTCACCCTCGGGGGAACTACCTTAATTG
TTTTTCCAGCTTCGGAAAAGCACCTGGGCTATGCCTCGAACTCTCTTAACTGGCCCAGGGGTTAA
CTAAGAACTATATCTTCTCCGCATCAAGGAAAAGAACAGAGATCTTTGTTGAAGACAGTACGGCA
ATGCGCAATCGCTAAAGAAGACCACAAAAGCTATATCACAAAGAT



Found at i:1325624 original size:31 final size:31

Alignment explanation


    Indices: 1325586--1325650  Score: 130
    Period size: 31  Copynumber: 2.1  Consensus size: 31

    1325576 ACGGACAGCG

                                           
    1325586 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT
          1 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT

                                           
    1325617 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT
          1 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT

               
    1325648 CTT
          1 CTT

    1325651 GTACCCTATG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.12, C:0.23, G:0.18, T:0.46


Consensus pattern (31 bp):   
CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT

Left flanking sequence: Indices 1325086 -- 1325585
GACGTGCGCTTACCTCTTGGCTTTTCTAAAACCTCTTTGTAAGTTCACATCCTCAGTAGTATCTC
TATAGACTTTCAAAAGAATTGAGAGCTGGTCAATTCTTTTTTCCTTAACAACATCTATTGCTAAA
TCCGATATTTTGCTTTCCATATTTACACTATCCATTTGATGGAGCATTCGGCCAGCCCTAACGGC
TACAAGAATAGCTACAGGCGGAGCCAAACCCAGCCTAGAAACGAAATCCGAAATGAGTTGATCCA
TAACGAGTATTATATTTAAGTTCTCTTAAAGAAGACCGCCAACTCGTATCCCGAAGATAGAAGCG
AAGCGACCGGTCCTCTTCTCTTGCGCCGAAATATAGTGTGGTGAGGTTTTGCCTCGCAGAAGGTT
GGGGACAAAGCCGAAACGGAACTAACGGAGATTGAGGTATACTCCGTGCTGCGAAACGGATTCTG
CCAGTACAAGACTGAGTCTTATTGAGGCCATGAAGACGGACAGCG


Right flanking sequence: Indices 1325651 -- 1326150
GTACCCTATGTAGGCTTGCTTCGCATAGGCTACACTTCGGTGCGGTACACTGAACACCAATCTAA
TCTCCAAAAGAATCAGTACACGCAACTAGATGATTCTAGTAGGAAGTCTTTCTTTTCTTTCTACG
GTACGATCCTAGGCAAAAAGCCTTTCTTTCTCTTAGCTGCTCTTCTCGCTATCGCTCGAGCGACT
CCGTACCTCTCGCAATTAGTTTTTTGTGCTTTGTGCTGTAATAAGAAAGATGTTGCTATTCTACG
ATGTGGCGTTCCAGAAAGACTCACTTATTTCTCATTCACACCGAAAAGCTAGTGCGCTGTCACTT
GGTATCGGATCTTTTCTAAATGATGAATTTGCCCTTCGACGGGTACTCCTAAAACTTCTATCTAC
CTACGTCATTCTTTCTTTATCTTTAATAAGTCAATTTCCCACGGTCAAGCCTAGTGGAGCTCCTA
GTCCGACAAGACTAGCTTTGACCACGAAAGAGAGAACAAGGCTTC



Found at i:1330530 original size:29 final size:29

Alignment explanation


    Indices: 1330488--1330544  Score: 114
    Period size: 29  Copynumber: 2.0  Consensus size: 29

    1330478 ATTAAAGGTT

                                         
    1330488 TCAGCTAATTTCCTCTTCGCTGCTTATTA
          1 TCAGCTAATTTCCTCTTCGCTGCTTATTA

                                        
    1330517 TCAGCTAATTTCCTCTTCGCTGCTTATT
          1 TCAGCTAATTTCCTCTTCGCTGCTTATT

    1330545 CTCGGAATTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.16, C:0.28, G:0.11, T:0.46


Consensus pattern (29 bp):   
TCAGCTAATTTCCTCTTCGCTGCTTATTA

Left flanking sequence: Indices 1329988 -- 1330487
TTAGAAATTACTATACCTATAAGACTAGAAGAGATAAAGAGGTAGGGACAGAAGAACCTATTACC
TATAACCACAATCGCTCGCCCCCTCTCCCCAATTGCCTGCTACCTTTTTGACAACCTCTGACTCA
ACGGCTAGATAAATGGCTAGCTCGGCAGAAACCGCTATTCCGAATTCTTTAAGTGATCGCAGAAC
CTCTCGCTCTTTGATAGACAAGAAGGATAGACTAGAGCTCTAAGGAAGGCTTAGCTCATAGCTCA
TAAGACTAGACAGGAAGGAGTGCCTATAGCTAGGAAATTGAAAAGCTAAAACACGGTCTTTCTTC
CTAAGCTATTATCATCTGGTTTTTATCCGGGGAAGAGTTTAGCTATTCTTTATACCCATTGATGA
GTAAGAAGCGAAGTTGTTTAAAGGATATTTTACTGGTAAAACCCCAAGTGATCCACTTTTAATTC
AATTTACTAGCGGAATTTACTTGATACGGGAAACCATTAAAGGTT


Right flanking sequence: Indices 1330545 -- 1331044
CTCGGAATTGCTTATTGATTTATTTTGGGAAAGTATAACCAGCTTCTCAGAAAAATCTTATCAGC
AGCTACCCTTTTCTCGCATCCTTAGTGTATCAGCTTGAGGAACCTAATCCCCCTCATTCCCAACT
CAAAAGCTAGAACTGACGTATCTATTGAAAGAAGGGAACTCGTAAGGCTGAGCTGAGTGAATCCA
TACTCTCTTTTCTAGCGTTTATGATGGAGATTCAGTTTCACAGCTTCACTTCTTAACGATCGAAT
CCCCTTGGGTTGAGTTCTTTCAGTCGAGTTACTATCGTACCTTCTCTTACTACCGGTTTAGTACT
ATCGGTTAAGCATCTGAGGGAATAGGAGGATGAGTCTTCAACTCCTTCTTCGAAACCTTAGGTTT
TAGAGTAATCTACTCCAGCTGATGTAGCGCGAGGAGGTTGCTTTCGGTTGTTTAGGGACTGGTGA
GCTTTTCTCAAGCAACTCACTTGTCCGAAACCTTGACCTTGGGCA



Found at i:1332623 original size:23 final size:23

Alignment explanation


    Indices: 1332593--1332638  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1332583 CTAATTCATT

                                   
    1332593 CTCCTCGTTATGCTTTTTTCTAA
          1 CTCCTCGTTATGCTTTTTTCTAA

                                   
    1332616 CTCCTCGTTATGCTTTTTTCTAA
          1 CTCCTCGTTATGCTTTTTTCTAA

    1332639 GTTTCTGGCG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.13, C:0.26, G:0.09, T:0.52


Consensus pattern (23 bp):   
CTCCTCGTTATGCTTTTTTCTAA

Left flanking sequence: Indices 1332093 -- 1332592
GTTGGATAGGCAAGATTCTGGTGTAAGAGAGAGGTCTTACACGGAATCAGAGGCCAAGTTTCCTT
ATGCCAAATACTCATTAAATCCTCGAGAGGTATCATAGGTTATCTTCGATGGTGTGAGTGAGTTT
GACTTCTTTTTCTAATCTGGAGCTGAAAGAGATGACGCTAGTCTGGTAATAGGCACTTACTTCTT
TTTAGCCTAGAGCCTTTATCCTAAGGCCCAAGTAGTTAGATTAGTTTATTTGTTTTTGTGGGTTA
TCTCAAGCTGTGTTCTCTTGTTTTTGGTCATGGGTATGGCGAACGAGCTGCTGTCTAGCCCAGTA
GCCTATCCTTTCCTTTGACTGACATGCTTTTATGTGCTTTTGCTTATGGATGAGGCCTTTTATCC
TACCTTGAGTAATCCGACTCAAAGGGAATACTTTCAAAGAAAGTAAGATCTGAGACAGAAACCTT
AATTCCTTCTTCAACTAATGCCTAAGAGCATAGGGCTAATTCATT


Right flanking sequence: Indices 1332639 -- 1333138
GTTTCTGGCGCTAAGCCTTCGCATGAGTTATAGTTACTCCTGCCTCCGGTTTATTTTAAGAAAGA
GTTCATTCCTTTAATATCGTAAGGGAGCGGGAATCATCTCTTTCCTCTACTGAACCTGAAGAAAG
ACCAGGTTCTGCAAGACCTTTCTTTAAGGCGCTCTCGGGTATAGCACGGGATGTTCTAGTCAGTC
TTATTCGTTTCGATTCATATTCTATTCGTCTGCCCAATAAGCATTCCCTGTAGGAACTTTTGCCT
TAGATTAGACTTCTGGCTTGGAGATGGTGGAATTTCCGTTAACAAATTCGAGATTTCCGCTACAA
CTACTAGAACAAGTAAGCCCCTTCGTACAGCCCCACGTCAGAAACAATAAACCGAGTAGACATAT
TGGCATAGCATCCAAGGGGAGACAGCCGCAGCGCAGTATCTTCGTGCAAGGTTTCTGGGTCTATT
TCCCAAGAAAATAAATAACAACGAAATGAAGATAATTCTAAAGGT



Found at i:1333502 original size:21 final size:21

Alignment explanation


    Indices: 1333476--1333517  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1333466 AGACCTTAAC

                                 
    1333476 AGCGGCGAAAGCAGATGAATA
          1 AGCGGCGAAAGCAGATGAATA

                                 
    1333497 AGCGGCGAAAGCAGATGAATA
          1 AGCGGCGAAAGCAGATGAATA

    1333518 GTCAAAGAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.43, C:0.14, G:0.33, T:0.10


Consensus pattern (21 bp):   
AGCGGCGAAAGCAGATGAATA

Left flanking sequence: Indices 1332976 -- 1333475
GTAAGCCCCTTCGTACAGCCCCACGTCAGAAACAATAAACCGAGTAGACATATTGGCATAGCATC
CAAGGGGAGACAGCCGCAGCGCAGTATCTTCGTGCAAGGTTTCTGGGTCTATTTCCCAAGAAAAT
AAATAACAACGAAATGAAGATAATTCTAAAGGTATTCCCACCTCCCTACCCGAATCAACCTTTAC
TTCTCTTACTCAAAGTAAGATAAAGGGGAGCTCTTCAGACTACTTGCTCAAATGGAGATAGAGCT
ATTTCATTAGGCTGACGAGTATAGTTCACCGGTTCGGGCATGAAATGAAGATTCTGATTAGCCTG
TTTCCAATTAGACCTATCTATTCCCAATTACGTCTATCTATCTTCTTTCTTTCACTGAAAGGTGA
ACGGGGAATGCAAAAGGACCAGATCCCTTCGGAAAGCCCTTACTATTGGGGTGGGGAAGCTCTAC
TCCTGCAAAGTTCATAGATTCTAGTTGGCTCGTTGAGACCTTAAC


Right flanking sequence: Indices 1333518 -- 1334017
GTCAAAGAAGAGAACAGGCCTAAAACAACCTCCTACTCATAAGCTACCTCGTTCAGTAAATCCTA
AAACAAGTTCTTAAACCCCGGGTCAGAATAAAGGAGTCATAAAAACAGAAATTACGAATTTCGTA
TAATGTGCAGAAATATCTGGATAGCGGCTTCTCTTACCCGTCCTGGATCCGGTAATGGGTCGGTT
TGCTTTCCTTGCTATTGAGCGGTTTACTCAAGCAGAGGAGATAGCAGATTCATCGATTAGGAGAA
CAAGTCCTAGAACATTCGCCTTAGCAGCAGTGCCCCTCTTTATACGTTCGTGTGCCATTAAGACT
AGATAATAGAAGAGATTGTAATCCTTGAACAGCTTCAAAGCGAGTTGAAAAAAGGCGATCAAGCA
GTTCACTAGCTCCCTTGAAAAATAGGAGGTTTTATGATAGGGGACGAAGTAGATTCGACTGGTTA
GCTTTGCTCCGGCTAAGAAAGAAATACTAGGCTGAGCCTTTCTGA



Found at i:1334339 original size:18 final size:18

Alignment explanation


    Indices: 1334316--1334353  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

    1334306 GTCTACCTCA

                              
    1334316 GGTGTAATCCCATAAACT
          1 GGTGTAATCCCATAAACT

                              
    1334334 GGTGTAATCCCATAAACT
          1 GGTGTAATCCCATAAACT

              
    1334352 GG
          1 GG

    1334354 CTCCATTTGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Consensus pattern (18 bp):   
GGTGTAATCCCATAAACT

Left flanking sequence: Indices 1333816 -- 1334315
TTTATACGTTCGTGTGCCATTAAGACTAGATAATAGAAGAGATTGTAATCCTTGAACAGCTTCAA
AGCGAGTTGAAAAAAGGCGATCAAGCAGTTCACTAGCTCCCTTGAAAAATAGGAGGTTTTATGAT
AGGGGACGAAGTAGATTCGACTGGTTAGCTTTGCTCCGGCTAAGAAAGAAATACTAGGCTGAGCC
TTTCTGACTATACAGACCTTTTATTAGGGTTGAGACGGGTGACTGACTCTTACGTACTTATAGGA
GCAGGTCGGACTCATCATCCGCTTTCGAGATAAACGAATCCAAATACAATACTCTTTTCAAGGTA
ATCCGTTATTGATTCAGGAAGCTCAATATTTCCATGAATTTGACAAGTTCCAAGGAAAGCCACCC
ATGCAGAAGGACTAGGGGCTATTGACATTTTATCAATAAATTGAACAGCTTCTTCCAAAAGTACT
GCACGACCTAGTATATCAAGCATGGAAGAATAGTGGTCTACCTCA


Right flanking sequence: Indices 1334354 -- 1334853
CTCCATTTGATTGAAAAAGATTTTTACCTACTTCACCAACCCTGCATGGCTACAAGGACATAAGA
CGTTGTTAAATGTCACAGAATTGGGCTTGACTGTAGTTTCTTGCATTCTAGAAAAGAAATCTATT
GCAGCTCTACCCTGTCCATTCATTTACAACCCAGAAATCATGGCACTCCAAACAAATACGTCCCT
CCTATCAACAGAATTAAATACCTCAAGTGACTTCTTTACATCTCCACATTTGGAATACATATCTA
CGAGTGAGGTTGTAAGATGACAGTTTCAAAAAATAGACTCTTCTTTTATATAGGCATATATAGAG
CCGCCTATATCCATTGCTCCTAATTGAGCACAAGCTGATAGAGTGCTAACAAGAGTGATCTCATC
AGGTTTAACAATTTTGCTCTGTTGCAACTCATGATATATGGACAGAGCCTCCTTTCTTGGGCTTA
CCATTCTGTTCAATATATGAACACACCCATCTACCGAACTACAAG



Found at i:1336960 original size:21 final size:21

Alignment explanation


    Indices: 1336934--1336976  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1336924 TGAGAGGCTA

                                 
    1336934 TAAAGATGATGCCTTTCTTTC
          1 TAAAGATGATGCCTTTCTTTC

                                 
    1336955 TAAAGATGATGCCTTTCTTTC
          1 TAAAGATGATGCCTTTCTTTC

             
    1336976 T
          1 T

    1336977 TTAGGCTGGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44


Consensus pattern (21 bp):   
TAAAGATGATGCCTTTCTTTC

Left flanking sequence: Indices 1336434 -- 1336933
GGCTACAGTAGAAGAGGGTCTAAAGCTGACTTTCTATCCGCTTCTAACATCCCGAATTCTTCTTC
ACCAATAGGAGAAGAGAAGGTGCTGATCCGATAGGGTCCGAAGGATGGATAGTAGCTGAGCTTTC
TAGTGTCGGCGAACGAAGGAAAGAAGATTGAATATGATATTTCGCAAGAAGAGGATTTGACTTGG
AATAGAAAGCATCACGAGCTGATCGGTTAGTGGACTGATTCTGGTCGATCGGGCTATGCTTCCTC
GTGTAAGTGGAGCGTTTCGGGCGTGCTACTTCATCGTCCTTTCGAATATATTATTATTATTTCTT
ATAAAAGCTATTCATAACTCTCATACTAAACGGGTAGGTTAACTCCTTACTTCGCCTTATCAGAT
GTATCAGCTTGTTCGCAGCATAGCTGATATATGGGTATGAATATCGACAGGACTGCCCCATATCT
TGCAATAGCGATTTCGGATATATAACATCGGGCTTTGAGAGGCTA


Right flanking sequence: Indices 1336977 -- 1337476
TTAGGCTGGATTTTCGTTCGTCTTCCTATCACGTCTGAAAGCACAAAAGCTCCTCTTGCTCGAGG
ATCTTGTTATATTATTAATGGCGTAATCGTTGAGATGCAGTGGAAAGCTTGCGTTGTCATCATGG
TGTTTTGTAACCCGGCATCGTATTTGTCCTATACCCGATAGGCGTTGTGCACGAGGGTTTCTATA
CCAGGCTTTGAGAACGTTCATTTTCACCACTCTATAGTCGATCCTAAGAGCCAGATCTCTTCGAG
CCTTATAAGGTTTACCTTAACAGAAGACAATGTCTGAGATTTCCGTCAATATATAGGAAGCAGGA
GTAGCATCCGCTACTGAATGTGTCGAAGGAATTCATAACAAGAAAGTTCTCCGCGGTGAAGCGGT
ATTCGGGCTTATAGCCTATCAGCTCAGCTCTTTCAAATCTGAGAAAATCACTTAACTTATAGATA
GTTCACCTATTTAGTTCTCCAGAATTAGTCATCATCGTTATCTTC



Found at i:1343747 original size:26 final size:26

Alignment explanation


    Indices: 1343711--1343763  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1343701 AACAGCCAAG

                                      
    1343711 AATCACTGAGACTGCTATTAAATGGA
          1 AATCACTGAGACTGCTATTAAATGGA

                                      
    1343737 AATCACTGAGACTGCTATTAAATGGA
          1 AATCACTGAGACTGCTATTAAATGGA

             
    1343763 A
          1 A

    1343764 TGGTCCAAGA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26


Consensus pattern (26 bp):   
AATCACTGAGACTGCTATTAAATGGA

Left flanking sequence: Indices 1343211 -- 1343710
TTACTTATCGATTTCCGCTAACAAATCTCATTAAAAAATGTACAAAATGTCGTCCAATTATTTCA
TGAAAAGCAAGATCAGATCATCATCATTACATACTGTGGAGAAAGAAGTCTGGAAACTGATTTGG
AGTATAAAGGCCCCAACAAAGATCAAGAACTATCTATGGAGATCTTGCCATAACGCCATAGCCTG
CTGAATCTCTGGAAAAGGTAAATTCTGAAATCAACACTATGCCCTATCTGTCAACAAGCAGAAGA
AAGAGTGGAACACATGATGCTGACATGTGGATGGGCTCAACAAGTATGGTATGCTTCAAACCTCT
CTTATAAAATTGATGTACAGAAAATTCGAACTTTTGATGAGTCGCTCAAGAGTCTTTTGAATATT
GAGTGCAAAAAGGCTGAAGAGAAGAACTTTGTGAGATCTTATATTGCCTACGTTTGCTGGGAAAT
TTGGAAAGTAAGGAATGAGGCTGGTCACAATAGAAAACAGCCAAG


Right flanking sequence: Indices 1343764 -- 1344263
TGGTCCAAGAGTTCTATGATGCCCAGCAGCATGGTCAAGGAAAACTAAGTAAAATGCCCGAGACT
GAAGAAGTGAAATGGGAAACTCCTGGCAGGGGCTGTAAACTGTGACGGTGCATATGATAAAGAGA
CTGGAATAGTAGGCTTTGGGGTGATTGGCAGAAATGAGAAAGCTTAAATGGTAGCAGGAGAAGGT
GGCAAGGTTAGAGCTATGTCAGCAATTGCAGTAGAAGCAATAGCAATTAAAGAAGGACTGAAACT
AGCAAGAGGGATCCAAGCTGAGAAAGTCATCATCGAGTCAGATTCTGAGATTCGGTTTGACAAAC
CTTCGAAAACAGATAAAGATATATTTTGATTTCTTAGAGGTTTGGGAATGTGCTTCTAGTATATC
CAAAGAGCCTATTACGAGCTATGAGAATTTCTTTTACCCTAGGGATGAAAGCGACGAGCCGTAAG
ACTTTGAGGCTAATGATCAATCACCTAGGTCGGTAAGGTTTCTCG



Found at i:1348454 original size:23 final size:23

Alignment explanation


    Indices: 1348424--1348473  Score: 93
    Period size: 23  Copynumber: 2.2  Consensus size: 23

    1348414 AACCGAAAGC

                                   
    1348424 GACT-TAAAAGTATGACGCTTCT
          1 GACTCTAAAAGTATGACGCTTCT

                                   
    1348446 GACTCTAAAAGTATGACGCTTCT
          1 GACTCTAAAAGTATGACGCTTCT

                 
    1348469 GACTC
          1 GACTC

    1348474 AACGGCTATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  22    4  0.15
  23   23  0.85

ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30


Consensus pattern (23 bp):   
GACTCTAAAAGTATGACGCTTCT

Left flanking sequence: Indices 1347924 -- 1348423
TGAACCCATTGAGATGACCCAAGAATTTCGATGGCTTTCCTTTCGTCGAAAGTTTCGTCGAGTGC
GCGATCATGTCCTCTTCTAAGCTGCCTTAGAAGTGACCAATGAGTTCTCATTCTGCTTGTTTCCA
CAGAAATGGTAAGAAAGAGTCTACGAAACAAAGAGAAAATCAACTGCTCTATCTATATCTATATA
ACATCTATATAACATTTATTGCTAGACCGATAGGCCTTAGACCTGCTTTAGAGATCTGTCAGGAT
TCCGTGGTCATCGCTCCCATGTCTTTCTTGTTTGGAAACTGTTACTTCTTAGAATTCTTTGAGTC
ATGGGTATGTCTCAGGACCGAATAATGTAAGCAGTTACGTGGAAAATTCAATTCCCAAGTCTGAA
GCTATCTACTTAGGTCGGGACAGAAGGAAGGGATCCGCATCTAGGCTAGACATAAAGGCTGGATC
TAGGACAGAAAGAATAGATTCTGAAACAAAGAAAGAACCGAAAGC


Right flanking sequence: Indices 1348474 -- 1348973
AACGGCTATATAAATAGCTCTTTCTTATGCCCCAATTCCCTGTGCAGCTAGATTGCTTGATGCGA
GAAAAGGGTATCTAATAAGAGTACCCAAGTACGATAAAGAATGCAATAGATTCAGTTTCAATCAA
TTCTCGGCTAGCCTACTCGAATTCGAAATTATCAACTTCGGAATGAACCGAGTGAAGTTCGTTCC
TACCTAATACAATTGAAAAGAGACCAATCCAGACAGTAAATCGTTCGTGAGCCATAAACATTTAT
TTTATTCGCTTCTTCTGCTTCCTGAGAAGGGTTATGAAAGAAAGCCCCATAAGTTAGACCTCAAC
CATAAAGTCAAGTGCTGTTGTGAAATCAATACCTATCACTCCCCACTTCCGCCCCCTTTGTAAAG
TCACCCGGATTGAGGAAAGCCCAAGTTCATTAATGTTACCTGATCGATTAACAACTAAGCAGTGG
AGCAGGAAAGTCGAAATCCTAAATCTCATCACACACATCAAAGGC



Found at i:1349259 original size:25 final size:25

Alignment explanation


    Indices: 1349225--1349274  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1349215 TAACTCAAAA

                                     
    1349225 GCTTTCCCAGTCCTACTACTGTTGC
          1 GCTTTCCCAGTCCTACTACTGTTGC

                                     
    1349250 GCTTTCCCAGTCCTACTACTGTTGC
          1 GCTTTCCCAGTCCTACTACTGTTGC

    1349275 TAGGTCTCTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.12, C:0.36, G:0.16, T:0.36


Consensus pattern (25 bp):   
GCTTTCCCAGTCCTACTACTGTTGC

Left flanking sequence: Indices 1348725 -- 1349224
AACATTTATTTTATTCGCTTCTTCTGCTTCCTGAGAAGGGTTATGAAAGAAAGCCCCATAAGTTA
GACCTCAACCATAAAGTCAAGTGCTGTTGTGAAATCAATACCTATCACTCCCCACTTCCGCCCCC
TTTGTAAAGTCACCCGGATTGAGGAAAGCCCAAGTTCATTAATGTTACCTGATCGATTAACAACT
AAGCAGTGGAGCAGGAAAGTCGAAATCCTAAATCTCATCACACACATCAAAGGCAATCCCCGATT
GAGCGCATCCGTCTTCCATCACTCGAGGGCCTAATTCTCTAGCTTCTGAACCGGAATTGAGTCTA
TTTAGAATTCGATTTATTAGTGGAACATTCATTCCCGAACCAAGAAATAGGTTATGCATCTGAAG
ATAGGTTATTACCCGGCTGACTCAATCCCACGAATCAGACCAACTGATTCGCCTTTTCCTCTTCC
TTCTCCTCTTTCCTTTTCTGAACCTTGGGTAGAGATAACTCAAAA


Right flanking sequence: Indices 1349275 -- 1349774
TAGGTCTCTTTCAGAGCCTGTTGCTAGCCTGTCTCTAGATTTATTGGAAAATAGGTTCTTTGAAG
AAGGATCTATCTCCTACATTAGATTGTCTGAAGTGGGCGAGCTATATCCTTAGTCCCTTTCTTTA
TCTGCTTTATATCTAGCTGTGAAAGCTAACTCTAAACCTATGCTCTAAGTAAATGAGCGGAGAGA
TACAGATACTTCTCGATTCTAGGATTATAGGCATCCGACACTACACGGTGTAAGGTAACCTGAGT
ATTCGATATTGAAAGAACTCAAAAGCTATTCCCTAATAAAGTAAAGCCAGCAAATGAAAAAACTC
CTAACTCTTTCGCTTGTTCTGGAACTACACCAGGGGGGTCATTAAAAGACGGGAAAACGTTAAAC
TCAGCTCTTTCGACTGCTTCTTCGCCCACTTCTGCATTAAGCTTCATCAAAGCTAACCTTCTTCC
TCTTTCTCGAGTAGGCCTCTGTCAAGACCTCGATTCGGGAAGGGA



Found at i:1349848 original size:20 final size:20

Alignment explanation


    Indices: 1349823--1349863  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

    1349813 CAGTAGCCTT

                                
    1349823 ACTATCGGGAAAAAAGATAG
          1 ACTATCGGGAAAAAAGATAG

                                
    1349843 ACTATCGGGAAAAAAGATAG
          1 ACTATCGGGAAAAAAGATAG

             
    1349863 A
          1 A

    1349864 GCTTCTGCTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.51, C:0.10, G:0.24, T:0.15


Consensus pattern (20 bp):   
ACTATCGGGAAAAAAGATAG

Left flanking sequence: Indices 1349323 -- 1349822
AAATAGGTTCTTTGAAGAAGGATCTATCTCCTACATTAGATTGTCTGAAGTGGGCGAGCTATATC
CTTAGTCCCTTTCTTTATCTGCTTTATATCTAGCTGTGAAAGCTAACTCTAAACCTATGCTCTAA
GTAAATGAGCGGAGAGATACAGATACTTCTCGATTCTAGGATTATAGGCATCCGACACTACACGG
TGTAAGGTAACCTGAGTATTCGATATTGAAAGAACTCAAAAGCTATTCCCTAATAAAGTAAAGCC
AGCAAATGAAAAAACTCCTAACTCTTTCGCTTGTTCTGGAACTACACCAGGGGGGTCATTAAAAG
ACGGGAAAACGTTAAACTCAGCTCTTTCGACTGCTTCTTCGCCCACTTCTGCATTAAGCTTCATC
AAAGCTAACCTTCTTCCTCTTTCTCGAGTAGGCCTCTGTCAAGACCTCGATTCGGGAAGGGATAG
CTACTTTTGGTATACACTACTATTTGAACAAAACCCAGTAGCCTT


Right flanking sequence: Indices 1349864 -- 1350363
GCTTCTGCTTTCCAAAGCAGCTTTCTCGTAGGCTCAAAGGCATAGATAGATCCTTCTTCTTCAAC
AACTAAACCCGAAAAGGGATTGATCCGATAATGGCGAAGTCGAATTAGGGTTATGTCTCAGATCA
GGGTACTGGAACAACCTAAAAACAAATTCTATGGACAAGTTTCCTTATTCAAAATACTCATTAAA
TGATCGAGAGGTATCAGACTGACTATCCATCAGCTTGAGAAAAAGATGGATGAGATTAAGCAACT
TTGGCCCATGATAATCCTCCTGGGGCGAGCTGTAAGGTTAAGGGAAATTCGAGTCGGGGGTTCAT
AATCTTTCCTTTCTCACGAACGGTTAACTAGAACTAAAAAATGACATAAATAAGGTAGGTGTGGT
GTCTAACGGTCCTTTCGAGTACAGTATCCCGCTCGACACCTTTTATACGCTATTCCCGAAGTGAG
TCAGGTGCTTGCCTCACAATCCCCATGTCCAAATCCATGACACAG



Found at i:1353885 original size:23 final size:24

Alignment explanation


    Indices: 1353855--1353901  Score: 87
    Period size: 23  Copynumber: 2.0  Consensus size: 24

    1353845 CTTCTTCTAT

                                    
    1353855 TACTATAAGAGAGAA-AAGGTAGA
          1 TACTATAAGAGAGAACAAGGTAGA

                                    
    1353878 TACTATAAGAGAGAACAAGGTAGA
          1 TACTATAAGAGAGAACAAGGTAGA

    1353902 ATCTAGTATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  23   15  0.65
  24    8  0.35

ACGTcount: A:0.51, C:0.06, G:0.26, T:0.17


Consensus pattern (24 bp):   
TACTATAAGAGAGAACAAGGTAGA

Left flanking sequence: Indices 1353355 -- 1353854
GTTGAGTGCTTTCGCGCCTTGCGTGCTTATACAATAAGTAAGGTAAGATGCGATTGCAACTGATC
GAACCACAGGCACAGGAATGAGAGCTCAAGCATAACCGACCTATAGAATTGGGAGGAAGACTCTC
TAATCTACGGAACCACAAGAGGGGCTGCTAAGCTGTCTACTTTTGTACTAGAGTACGGGAAGATA
TAGAGCAGTAGGGATCTATTCTTTACTTTACTACAGTAAGGGTAGTGATTTTTTAAATAGAATAA
AAAAGACACAAGTGCGCTTCCTTCGCTAATGAATGAGATAAGGCTTAAGCTAAGCTCCCAGTCCA
GTCGTTAAAAAATTGGATGTTAGTGCGGGTACCTTCCCTTTTTTCAGAGCTTCCTGGTTCGATAA
GTTTGTTTATAAGTGTTAGCACACGCAGGGGATCTAAATGAAAACCAAGAAAGAACTCGACTCCT
GCCATACGGCTTCTCGGTTAGTGTGGTGCTTGCCTCTTCTTCTAT


Right flanking sequence: Indices 1353902 -- 1354401
ATCTAGTATAGGTGGAGGGAAGTCTACTATTCCTATACTTGAAATCGGGGTTTCCGTTAGTGCTA
GTGCTGGTCCATTTCCCTAGAGGAGGTTTTCTTTTTCCCTAGAGGAGGTTTTCTTTTAGGTTAGC
GCTTGCAGGTTCAATCTCTGTTACTATAAGAGATGCTGAAAATCAGTCTTTCTACCTTTCTCTAT
ACTAGAGCATAGGGGAATCACATTTGACTTTATAGACAACCGGGGCATCAGCGTACTTCACGGCT
AACTGAAGCCAATGCGGATAATTCCTTTTCCGAATGAAAGACGATAGGGAGACTCCTATGTGCGA
ATTCACATAAATGTGGTTGACCGGCAGCAGCCTTCACTAAAGAAATTCTAGCTGCTCAAGCACCA
TCGGACTGAGATCAATCTGCTCTAAGACTGTGTTTAAGCAGTTCTTGCAACTCATACCTACGCAG
CTACAGACAGATCCAGACCTGTTCTATAAGAGCGAAACCTAAGAT



Found at i:1354003 original size:22 final size:22

Alignment explanation


    Indices: 1353978--1354023  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

    1353968 TGCTGGTCCA

                                  
    1353978 TTTCCCTAGAGGAGGTTTTCTT
          1 TTTCCCTAGAGGAGGTTTTCTT

                                  
    1354000 TTTCCCTAGAGGAGGTTTTCTT
          1 TTTCCCTAGAGGAGGTTTTCTT

              
    1354022 TT
          1 TT

    1354024 AGGTTAGCGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.13, C:0.17, G:0.22, T:0.48


Consensus pattern (22 bp):   
TTTCCCTAGAGGAGGTTTTCTT

Left flanking sequence: Indices 1353478 -- 1353977
GACTCTCTAATCTACGGAACCACAAGAGGGGCTGCTAAGCTGTCTACTTTTGTACTAGAGTACGG
GAAGATATAGAGCAGTAGGGATCTATTCTTTACTTTACTACAGTAAGGGTAGTGATTTTTTAAAT
AGAATAAAAAAGACACAAGTGCGCTTCCTTCGCTAATGAATGAGATAAGGCTTAAGCTAAGCTCC
CAGTCCAGTCGTTAAAAAATTGGATGTTAGTGCGGGTACCTTCCCTTTTTTCAGAGCTTCCTGGT
TCGATAAGTTTGTTTATAAGTGTTAGCACACGCAGGGGATCTAAATGAAAACCAAGAAAGAACTC
GACTCCTGCCATACGGCTTCTCGGTTAGTGTGGTGCTTGCCTCTTCTTCTATTACTATAAGAGAG
AAAAGGTAGATACTATAAGAGAGAACAAGGTAGAATCTAGTATAGGTGGAGGGAAGTCTACTATT
CCTATACTTGAAATCGGGGTTTCCGTTAGTGCTAGTGCTGGTCCA


Right flanking sequence: Indices 1354024 -- 1354523
AGGTTAGCGCTTGCAGGTTCAATCTCTGTTACTATAAGAGATGCTGAAAATCAGTCTTTCTACCT
TTCTCTATACTAGAGCATAGGGGAATCACATTTGACTTTATAGACAACCGGGGCATCAGCGTACT
TCACGGCTAACTGAAGCCAATGCGGATAATTCCTTTTCCGAATGAAAGACGATAGGGAGACTCCT
ATGTGCGAATTCACATAAATGTGGTTGACCGGCAGCAGCCTTCACTAAAGAAATTCTAGCTGCTC
AAGCACCATCGGACTGAGATCAATCTGCTCTAAGACTGTGTTTAAGCAGTTCTTGCAACTCATAC
CTACGCAGCTACAGACAGATCCAGACCTGTTCTATAAGAGCGAAACCTAAGATCCCGCGTCGGAT
TGATCTGACTCCAGCGCCAGCCACCCCCAAGAAATCTTTTTCTTTGCTTCTTCTATGCCAAAATT
ACAAGTTTCTTTCTTTCTACAAGTCTTTGACTTTTCCCTTTTTTA



Found at i:1355159 original size:24 final size:24

Alignment explanation


    Indices: 1355132--1355180  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1355122 TTCTCTCCAA

                                    
    1355132 AGAAATCTCCTGTTTAATCTATCT
          1 AGAAATCTCCTGTTTAATCTATCT

                                    
    1355156 AGAAATCTCCTGTTTAATCTATCT
          1 AGAAATCTCCTGTTTAATCTATCT

             
    1355180 A
          1 A

    1355181 ATGTGCTTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41


Consensus pattern (24 bp):   
AGAAATCTCCTGTTTAATCTATCT

Left flanking sequence: Indices 1354632 -- 1355131
AGCCAAAACAAAGAAAGCGAAAGAAAACGTCATTCTAAGAGAGGACTTGGAATGTCTAATTTTCT
GGTAAGAATGGCCATTCGTAAGCGCTGAAGCAGGAAGATCTGATCGCTACCCATGAGAGGGGGTG
TTTTCCGAGCAATAAAGCAATCCCTCCTCCCTGATCCTCAGGTGAGAATACGCTCTTTCATTCAA
AAGTCAATATAAAGGGGCGCAGGCTTTGGAATCGTTATCAAGTGACATCCGAAATAAAGTCAGCA
ATCTTAGAATCGAAATCTAAGACAGTATGACCCCACCAACTCCACCAGTGGCTTCTCCAATATCA
CCAGATTGATTGTCTTTCTCCATTTGCCGAATACCAAGCCCGCCATTTCTTTTCGACCGGCAAAC
CTTTTACCACTTAACCATGTGCATCCCTCTCTTTGCTTCATTCCCACCCCCAAAGCCTTACTAAG
ACCTCATCAGCCTCTTCGACTATAGTCTCAGCGCTTTCTCTCCAA


Right flanking sequence: Indices 1355181 -- 1355680
ATGTGCTTATCACCGAATGTGGAAAAAGAGCAGTGGACATTTGATACGTTGGGATTGCCGTGGTC
ACTGACTTCACTAAGGTGGCTCTCCCTGCGAGGCTCAAAACCTTATTTTTCCAGCCTGAGACTTT
GTTATTCACTTTCTCTATTCCGCTCTCTCGCTTAAGTACGAAGGCTGCTTTGTCCCCTTCGGAAT
ACCCAGAAAGAGAAGAGGAGGAATTGTTTTGGTTATGCTTTCTTGCCTTCCTTTCGAACCTCTAT
AATAGCTGCCTTGCTAGCGAAGGGTCTTCAAAGTAAGTCTATCGGTGAAATAGACTCCTCGGATC
CTGAGAATCTTGAGTCCTCCTCATTGGTTGAGCTAGAGGCTCGTTAAGACGTCTGAGTGCTTCTT
TTCTTCAAAGGCCTATCTCGAATTCTGCTACTGAATGGCATTCTCTTTAAGAGTTCTTTAAAATA
ACGGTGCCAACAATGTTAAAGTTTTTTAAGGAGCCCTAAGTACTC



Found at i:1365451 original size:24 final size:24

Alignment explanation


    Indices: 1365424--1365471  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1365414 GGCGGTAGAG

                                    
    1365424 TTCTATAAGGCATTATTTGATGAA
          1 TTCTATAAGGCATTATTTGATGAA

                                    
    1365448 TTCTATAAGGCATTATTTGATGAA
          1 TTCTATAAGGCATTATTTGATGAA

    1365472 AAGGAAGTAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42


Consensus pattern (24 bp):   
TTCTATAAGGCATTATTTGATGAA

Left flanking sequence: Indices 1364924 -- 1365423
GGTCCAATCAACCGGTGATTAGAGTCTGGGGGGCGGAATTAGTTAGTTTTGGCGGGATTCCATTG
ACCTACAACTAATAAGCTCCACTTCTCAGGTTGTGCATATGAGGGTCACGGAACATGGCAGGACG
TGGTGTCTTTCGGGAGCTTATGTTCAACCCCACTGTAGTTTAAAAGATGTGTTTTGGGAGTATCT
TTAAACGGAAACGAGTCTTACTAGCCAGATTGAGTGGTATCCAGCGTTCAGAATCCTACACGAAC
TCTTCTTTCCTTCAATCTCTGGAGCAGGAGTTGTTACGAGAATATCAGGAGGTCCTTTATCAGGA
GGAGCTTTTATGGTATCAAAAATCTCGAAGCCAATTAATTAGAGATGGAGAACAGAATACAAGGT
TCTATCATCTTTCTACCATAATCCGCAAAAATAGAGATAAGGTGGTTCGATTGCAAATTGATGGG
CATTGGGTTGAGGATACGGATGTTCTTAAGATACAGGCGGTAGAG


Right flanking sequence: Indices 1365472 -- 1365971
AAGGAAGTACAGCCGCTGACACCGCTGCACCGGTGGCAACCGATGATAAATCTCTATGAAAAGGA
GGCGTTGCTAGCTCCCTTTTCCTTATAGTAAGCTAGAGCTGCTCTTTTCTCTATGAAGGTCCTAA
AAGCACCCGGACAGATGGGATTCAACCTTTGTTCTTACAAAGGGAATGGGAAGTGGAAAGTGAAA
AAGTGTTAAGCTTCATAAACCACACTCTCTTGGAAGGTTCTTTTCCATTGGAGCTTTCACAAGCT
CATATTACGTTAATTCCGAAGAAAGATGCCCCGGAGTCTATGGCTGATTTCCGCCCCATTACTCT
TCTAAACACTTCCTATAAGATCCTGACTAAAGCAATTGTACAACGTCTCCGACCGCTTCTTCAAA
GATTAATTGGCCCGTTCCAAAGAAGTTTCCTCCCAGGAGGTCGGGGTACGGGAGACAACATTGTT
CTTACTCAGGAAATTGTCCATACGCTTATGAAAAAGAAAGGTCGG



Found at i:1371109 original size:22 final size:22

Alignment explanation


    Indices: 1371081--1371125  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1371071 CCACCCACAA

                                  
    1371081 TGCCAGTAGTTGATAACCATTC
          1 TGCCAGTAGTTGATAACCATTC

                                  
    1371103 TGCCAGTAGTTGATAACCATTC
          1 TGCCAGTAGTTGATAACCATTC

             
    1371125 T
          1 T

    1371126 ACGGATTAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33


Consensus pattern (22 bp):   
TGCCAGTAGTTGATAACCATTC

Left flanking sequence: Indices 1370581 -- 1371080
GAATGAGCTAAAGAATGGTCCCTATGGAATTAGATGTCGAATGAGTCAAATTTCGAGCATAAAGG
TAGCCACCATACGTAGTGTACTTTCACAGAAAGGAATTCGGTGGAACCTTCCTCTGATTCTGATC
TGATAGGAAAATTGGTCGAAAGATTTTCTAATCCTTCTCCTTAAGCTCCTAGGAAGGTCAAGCCC
TTGGGACGGGAAGCTATTCTTGTTCATCATGCGCCTTGTGTGCTTTGTATTCTCTATCGCTTGGG
AATAAACGATCGCGATGTAGCAGGGTCGTGATAACTCTCTTCCAGCGGATCAACAAAGGCGAGAT
CAGCTCACTTGCCCACCTACTTCTCTCTTATATGATGAAAGAAAGTCCATCAACTATATAAGAAG
AGGAGACAGAGAGTTAGTAAGTTTCCCGCTTGTAGCAAGTTCTTACAGGACGTAGCTAAACCTTC
CGAGGGACATCCTTATATGTCAAAGAAATCTTATCCCACCCACAA


Right flanking sequence: Indices 1371126 -- 1371625
ACGGATTAAGCCCGAGGCTTGGATAACAGATCAACATTCCAGTATAAAAAAAAGGTGGATCTCTA
CTAAAAGAGGGTAAGCTAAACATAGCCCAGAAGGTCATAGGCAAGATGAGGCCTATTGGTAGAAC
GAGTGTCTAATGGATATCTTCGACTATCCTTACCGAAGTTTCAACAACTTAGTGACTGGCACTAA
ACTTAGATTCTTCCCTCAACTAAATGAATCAAGCTCTCCTCTCCTTATTGCATATATAATCGAAG
TCGCTATCTTTCTTCAAGTGATAGATCGGATCGATAAACCATCGCCCCAGGTGCGCACGCGCGGG
GTTGTTTAGTTGCTGACTACAACCCTTAAAAGTACGAGTTAGTCGACTTAATGATACGATTAATA
ACTAGTCAATTGAAAAGAACCTTAGGTAGAGCTTCACGCCAACCAACGGACTTCACGACCTTACT
CAATGCTAGCAACTACTGACATAGCAGACAAAGAAGACTATATAA



Found at i:1373161 original size:14 final size:14

Alignment explanation


    Indices: 1373142--1373170  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

    1373132 CCCCCGGGCA

                          
    1373142 TCGAAATGCTCTTT
          1 TCGAAATGCTCTTT

                          
    1373156 TCGAAATGCTCTTT
          1 TCGAAATGCTCTTT

             
    1373170 T
          1 T

    1373171 GTGGATATCG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.21, C:0.21, G:0.14, T:0.45


Consensus pattern (14 bp):   
TCGAAATGCTCTTT

Left flanking sequence: Indices 1372642 -- 1373141
AAAGGGCTTATGACTGGCCCAGAACTAGTAGATGGCAGAATTGAATGTACTTTTCATTTCATGGA
AGTCCCGGTACGTTAGGTAGTTGGGTGCGGCCTGCACAGTTTGAAATGAATCTCCTTAGAAAATG
GATCTGACCAAGCAATCTTTAGAATTCCTTCTGGGTGCCTCTGGAGCTTTCGTTTAGCCTGGAGA
ATTAGAATTGCCTTGGCTTTCTTCTTATCTACCTCTATTTGATGAACCAGGAATCAAAGTAAATT
ACCAGCCAAAAGAGGGGATGGGATTTCACTGCTAAAAAGCTCCTCATCCTCTCTCAGGCTCTTCG
CAGATCAGCAAATTGATCTTCTTTACACTTGGATTTGATGACTACAATAGATACCTCCATTGAAT
TGACAAGAATTAAGTCATGGAAGATAGCGTTCATGGCCCTTTGGTAAGTGGCTCTCGCGTTCTTA
AGCCCGAATTACTATCCACTCATAGCTTCCGAATGCCCCCGGGCA


Right flanking sequence: Indices 1373171 -- 1373670
GTGGATATCGTCTTCGGCTATCTAAATGGAGCTCGGCAGTCCGGAGTCAAGATGAGGTGCTTGAT
CAGAAGGCATGGCTACCATTGGCCAGGCATAGCTAAGTCTTTTAACCTTTTATGCTAAAGCTTGG
ATTCATTCAAAGGATCCCAGCCACTTAAGGACATCCCATAGTTAACCGCGGCCATTTATAAGGTG
GACTCTTGAGGCAAGATTTTTCCGCCATCAAGAAAACAACAGATTTTTGACTTGTGGCTATTTAC
TACTTCACTAAGTGGGTATAAGGCATTCCTATAAAGAATGTGAATCAGAAGAGGATAATCAAGAT
CCTGGAATATTATACATAGGTTTGGCATCACACAGGCAATCAATGCTAAGGATCTGTCTTTACTG
GTGATCTCTTATATCGAACGGTCTTGTAAAGGCCGAAGCCCCCTCACCACTGAGGTTATCCAAAC
CCCAATAGTGAGCTAAAGAGAATATGTATTACACCTCCTATTTTG



Found at i:1393491 original size:26 final size:26

Alignment explanation


    Indices: 1393455--1393507  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1393445 CTAGAGAAAA

                                      
    1393455 ATTCATGACTCCTTTAATAAGATTCC
          1 ATTCATGACTCCTTTAATAAGATTCC

                                      
    1393481 ATTCATGACTCCTTTAATAAGATTCC
          1 ATTCATGACTCCTTTAATAAGATTCC

             
    1393507 A
          1 A

    1393508 AGGGGTCTAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38


Consensus pattern (26 bp):   
ATTCATGACTCCTTTAATAAGATTCC

Left flanking sequence: Indices 1392955 -- 1393454
ACAATCACCCACGATTTGGATATATCCAATAGGCCAAGGACACGGGATCCCAATGCCGCAATGAG
ATTCTTGTTGAGAAAAGGTCTGGAACTTAGAGTTCTGAGACTCCTCTAGTCGACAGAGATTGGAC
TAATAGAATAAGAAGCTGGTGCCCTAGGCGGGGCCTCTTCCTATTAATGATGAGTGCGGGGCCCA
GGCTTTTTTTAGGGGACGGCTTTATGGAGTCTTAGCCGGGGTCGATGTATAACGACACAAGTGTA
CTGCCGCAGAAGTCTTTTCAAAAGAAGGAGTCGAAATGCTATTTACGAGATGATTTAGATCTCAA
TAGCACCTGTGACCTTTTGGCCTAGTGCTAGGGGTCGGATAACGCTTTTTGGTGAGGTCAGGGAA
CGAATAATGAGGGGGGCTGGTTTGAGTGAGGAAAAAAATCCTTTTTAGGCACGCAAAGGATTCTT
AAAACCTGGGGCAGAATTCGTCTTTTATATTTGCACTAGAGAAAA


Right flanking sequence: Indices 1393508 -- 1394007
AGGGGTCTATGATCTCTTTCTTTCAGGGGGTCAATATCAAGCTAGAGGCACTGGAGAAGGAAATC
CAAAAGAAGTAGTCCAATCCTAGCCTGAGGAGTGCTGGCCGAGTCGGAGTCGGATATTTGGACTT
TTCTTTATCCACTCAAGGGGGTAAATACGGATCAGAGGGGAGGTGAAGTTTGATACGACCAGTAC
GACCTATTCCCGAGATCAATTTGCCTGGGGAGGAGAGGCTTCAGTACGCTGGGGACCTTGAGCCG
GGCTCAGTTGATCCACTTTTTTGTGTTCGTGCTAGGGGGCCGGACATTGAGGACATCCTTTTGAC
CCTTACGTGTACACAAACCGGAGTGCACTGGCACCAGACCTCGCCCCTTTAAAATCCTTTTTGGT
GGCTGCCATAGATCGCTTAGAGCTTGCAGAGGGGGTCAATATCAGAAGTAGTCGGGGAAATCCAC
CCTTGGGAGGGGGGGTCGATACACCTAGATGAGAAGAATTCCTCG



Found at i:1395472 original size:22 final size:22

Alignment explanation


    Indices: 1395447--1395491  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1395437 TTGAGTCTCG

                                  
    1395447 ATTTCCCTATCTATCAATTGGT
          1 ATTTCCCTATCTATCAATTGGT

                                  
    1395469 ATTTCCCTATCTATCAATTGGT
          1 ATTTCCCTATCTATCAATTGGT

             
    1395491 A
          1 A

    1395492 CTGCTGGTAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.24, C:0.22, G:0.09, T:0.44


Consensus pattern (22 bp):   
ATTTCCCTATCTATCAATTGGT

Left flanking sequence: Indices 1394947 -- 1395446
TACTTTGACTTTTCAGGGAAGAAATAGAATTCAAAATGGACAAAAAAATAAGGTTTTGACCCTAG
TAGAGTAACAACTTTGCATCTTTTTCATGATCTCTATGAGTGAAAAAGGCATAATGTACTTTCGA
CCCTAGGTGAGTAACAAAGTTTTCTATTTTTCATGATCTCTCCGAGTGAAATTATCGAAGTGTCA
TTTCTCCCCTTACGAGAATAACTCTTTCGGTCGTTTAGGTCTCAACGAGCATCACCTAGAAACTT
GACGAGTCAGAATATAGACTTTCACTTTCTTTCGAGCGTCGAGCTAAGGTTGGGGAGGGGAGACA
TCTAACCTAGACACATCGGGATTATCTGCCTTTGCTTTGTTTAGTGCCTGTTCTCTCTCTGCCTT
TCCTTCCCCGTTCTTTACTGGGCTGGGGAAAGAACTTCTCTATACCTGGATCCAGGAAAATAACT
TTCGCTTTCGGTTCCGTTCTTGAAAGGAATCTCTGTTGAGTCTCG


Right flanking sequence: Indices 1395492 -- 1395991
CTGCTGGTAGGCAGCTAGTCTTTACCGAGGAGTGAAAGCGATTGTTGCAACCGACGAGATAACGT
AAGAAAGATAGCTGTGAGAAGCGAAAGGCCAATAGGTTCAGAAGAATTAGGGCTGGTAGTTGGCT
TTCTCTTTTCCTCAAGTTGAAGTGTAATTCAGATGGATGTGAAATAGTTGCTACTCGCTCTTGAG
ATAAACCAATATCAGTCTCAAGGGAAGTAAAGTTAGTTGCTTGAGAAGCGGAAATTCTATACCAG
TCGCAGCGGATGCGAATAGTCTTAATCATGTAAAAGGTAATTCAACTACTGAGAGACAATACAAG
AAGGACTCTTTCGCTTGGGATTTATTGAAAAATGTGATTAAGGAGAAGCTGGATTTCGACTTTCC
TGTTTAGGTAGTTCAATCCTTTGAAGTAGGTCTGTCCTTCTTTTATTACATTACGTAGAAAAGTC
CATAAAAGATGGTCCCTTAGACCCATTCTCCAGAGAGTGGTTTTC



Found at i:1410376 original size:21 final size:21

Alignment explanation


    Indices: 1410350--1410392  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1410340 AGATAGCTAC

                                 
    1410350 TTCGGAAACCCCATGATCCGA
          1 TTCGGAAACCCCATGATCCGA

                                 
    1410371 TTCGGAAACCCCATGATCCGA
          1 TTCGGAAACCCCATGATCCGA

             
    1410392 T
          1 T

    1410393 GCCATACACG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.28, C:0.33, G:0.19, T:0.21


Consensus pattern (21 bp):   
TTCGGAAACCCCATGATCCGA

Left flanking sequence: Indices 1409850 -- 1410349
TTTGGCAAGATGATTGGATGTACTATAGTCCATTAATTTCTCATGCTTCTAGGCCGCTCTCTTCT
TTGGAGTCGGATCCGACGGGTGATCCACCTTCCTCTCAACACCATCCCCCTCTCCCCTCGTATAA
GAGTGGGGTGAAACGTGATAGAACGGAGCAGTTGGAATCAGAAGTAAGGTTTAGCTACACGGTCG
TGAGCCATCTCTCTCGGGCTTAATAGCAGCTTCAAGCCCATCATTACGAAGCGGATAAGGAGATA
GACAACCAGTTACATTAGACTGTTAGCTGTTCTATGAACCAATGGTGATTACAGTAGAACTCTGT
TTAAGTCTGTTGGTTTATTACGATATCCATCCTAAAAAATGAATATTCCCGGATTCTTACTTTCT
GAGACTGAGCTTAGAGCATAGGTTCAAAAGCAAGCTCCCGGGCATAGCTTTAGTTTAACGTTCGG
GTTCCTATAATCCGGGATAGAGATAATCCTAGAAGAGATAGCTAC


Right flanking sequence: Indices 1410393 -- 1410892
GCCATACACGATAGGGTAAGGAAGAAAGCGAGTCGATAATTCCTATTCCATAAAATCCATTGTTA
GCTTCGATGGCCGTCCCCACTCTATCTAGTTGACTTTTACTCCTCATCTCAGAAAGATGACGTGG
GAAAAGCAAGGCTCTGACAAGACCTATTAATCTAGTGCATATTCTTCTCGAGCAGATAGAGCGTA
TAGACTAACCTTTAAAAGCGTATAGACTAACCTTTAAAGAATAAGGTGTTCTTGCTTCCGGGTCT
TTGCTTCGGGTTAGACTTTCTCCTCCATCTGGTTCTGCTTCAACTCTTTATACTTAGGTTGAGTC
TAGCAGGCGTACTGGGTATACCTTTACGTCGCTTGCATTTCAGAATCACCCGAGTCCCTATTACT
TGGGGAATCCTATTCGTCACTTATTTAGTTGGATAGGGTGCGATCAACCGTACTGGCCTGTCTCT
TCGCGTCGATTGCCAATTATGTGGCACAGGGTAGGAAAGAAGACT



Found at i:1410610 original size:22 final size:22

Alignment explanation


    Indices: 1410582--1410625  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1410572 GAGCAGATAG

                                  
    1410582 AGCGTATAGACTAACCTTTAAA
          1 AGCGTATAGACTAACCTTTAAA

                                  
    1410604 AGCGTATAGACTAACCTTTAAA
          1 AGCGTATAGACTAACCTTTAAA

    1410626 GAATAAGGTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27


Consensus pattern (22 bp):   
AGCGTATAGACTAACCTTTAAA

Left flanking sequence: Indices 1410082 -- 1410581
CCATCATTACGAAGCGGATAAGGAGATAGACAACCAGTTACATTAGACTGTTAGCTGTTCTATGA
ACCAATGGTGATTACAGTAGAACTCTGTTTAAGTCTGTTGGTTTATTACGATATCCATCCTAAAA
AATGAATATTCCCGGATTCTTACTTTCTGAGACTGAGCTTAGAGCATAGGTTCAAAAGCAAGCTC
CCGGGCATAGCTTTAGTTTAACGTTCGGGTTCCTATAATCCGGGATAGAGATAATCCTAGAAGAG
ATAGCTACTTCGGAAACCCCATGATCCGATTCGGAAACCCCATGATCCGATGCCATACACGATAG
GGTAAGGAAGAAAGCGAGTCGATAATTCCTATTCCATAAAATCCATTGTTAGCTTCGATGGCCGT
CCCCACTCTATCTAGTTGACTTTTACTCCTCATCTCAGAAAGATGACGTGGGAAAAGCAAGGCTC
TGACAAGACCTATTAATCTAGTGCATATTCTTCTCGAGCAGATAG


Right flanking sequence: Indices 1410626 -- 1411125
GAATAAGGTGTTCTTGCTTCCGGGTCTTTGCTTCGGGTTAGACTTTCTCCTCCATCTGGTTCTGC
TTCAACTCTTTATACTTAGGTTGAGTCTAGCAGGCGTACTGGGTATACCTTTACGTCGCTTGCAT
TTCAGAATCACCCGAGTCCCTATTACTTGGGGAATCCTATTCGTCACTTATTTAGTTGGATAGGG
TGCGATCAACCGTACTGGCCTGTCTCTTCGCGTCGATTGCCAATTATGTGGCACAGGGTAGGAAA
GAAGACTTCATCTTCAAACCCCACGCTTTCTAAAGAGGATTTATCTGCTGACTCTGGGGCTATAA
AAATAGCTAGAGCATGTTCAATAAAAATAGCTAGAGCATGTTCAATCTTGGGTGCAGTTAATGTA
GAAACTTTCCTGATGAAGGAATCAGCTAACCTGTCTGCTGAAACCGAAAGAGTTGTTCTAGCTGG
TGTCTGACTCCGGGCAAGACCTTCCCTACTCAAAATGTTAAAGGA



Found at i:1410979 original size:24 final size:24

Alignment explanation


    Indices: 1410947--1410996  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

    1410937 CTCTGGGGCT

                                    
    1410947 ATAAAAATAGCTAGAGCATGTTCA
          1 ATAAAAATAGCTAGAGCATGTTCA

                                    
    1410971 ATAAAAATAGCTAGAGCATGTTCA
          1 ATAAAAATAGCTAGAGCATGTTCA

              
    1410995 AT
          1 AT

    1410997 CTTGGGTGCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26


Consensus pattern (24 bp):   
ATAAAAATAGCTAGAGCATGTTCA

Left flanking sequence: Indices 1410447 -- 1410946
ATCCATTGTTAGCTTCGATGGCCGTCCCCACTCTATCTAGTTGACTTTTACTCCTCATCTCAGAA
AGATGACGTGGGAAAAGCAAGGCTCTGACAAGACCTATTAATCTAGTGCATATTCTTCTCGAGCA
GATAGAGCGTATAGACTAACCTTTAAAAGCGTATAGACTAACCTTTAAAGAATAAGGTGTTCTTG
CTTCCGGGTCTTTGCTTCGGGTTAGACTTTCTCCTCCATCTGGTTCTGCTTCAACTCTTTATACT
TAGGTTGAGTCTAGCAGGCGTACTGGGTATACCTTTACGTCGCTTGCATTTCAGAATCACCCGAG
TCCCTATTACTTGGGGAATCCTATTCGTCACTTATTTAGTTGGATAGGGTGCGATCAACCGTACT
GGCCTGTCTCTTCGCGTCGATTGCCAATTATGTGGCACAGGGTAGGAAAGAAGACTTCATCTTCA
AACCCCACGCTTTCTAAAGAGGATTTATCTGCTGACTCTGGGGCT


Right flanking sequence: Indices 1410997 -- 1411496
CTTGGGTGCAGTTAATGTAGAAACTTTCCTGATGAAGGAATCAGCTAACCTGTCTGCTGAAACCG
AAAGAGTTGTTCTAGCTGGTGTCTGACTCCGGGCAAGACCTTCCCTACTCAAAATGTTAAAGGAT
GGGTGAGAGCTAGCTGGGAGAGAAACTAACTATGGGATGGCGCACTACTGAGCTATGGCACTGCT
GCTAACCCGATCGAATAAAGAGGAGGAATTCCTGCTCAAACTATTAGATTAGGGTTCTAATTCGA
CACCTGCGCTTGTGTCAAATGTTCTTGCTTTTTTGTTCTACCTCTTCTGAACTTTAATAGTCATA
CTTTAATAGTCATAGATGGCTGATTTCTCTAGTAGCTTTGGCTGTCGCTGAGTGAAAAGGTTTTT
TGTATCATCTTCTCTTTACTTGAAAGAGGTACCTATGCCGCTACTTTCTTAGGGCCTGCGAAAGC
CTTATGTATATCCCTGCATGCTCGGTGACAACGATTCAACGTATG



Found at i:1411326 original size:14 final size:14

Alignment explanation


    Indices: 1411307--1411335  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

    1411297 CCTCTTCTGA

                          
    1411307 ACTTTAATAGTCAT
          1 ACTTTAATAGTCAT

                          
    1411321 ACTTTAATAGTCAT
          1 ACTTTAATAGTCAT

             
    1411335 A
          1 A

    1411336 GATGGCTGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41


Consensus pattern (14 bp):   
ACTTTAATAGTCAT

Left flanking sequence: Indices 1410807 -- 1411306
TTAGTTGGATAGGGTGCGATCAACCGTACTGGCCTGTCTCTTCGCGTCGATTGCCAATTATGTGG
CACAGGGTAGGAAAGAAGACTTCATCTTCAAACCCCACGCTTTCTAAAGAGGATTTATCTGCTGA
CTCTGGGGCTATAAAAATAGCTAGAGCATGTTCAATAAAAATAGCTAGAGCATGTTCAATCTTGG
GTGCAGTTAATGTAGAAACTTTCCTGATGAAGGAATCAGCTAACCTGTCTGCTGAAACCGAAAGA
GTTGTTCTAGCTGGTGTCTGACTCCGGGCAAGACCTTCCCTACTCAAAATGTTAAAGGATGGGTG
AGAGCTAGCTGGGAGAGAAACTAACTATGGGATGGCGCACTACTGAGCTATGGCACTGCTGCTAA
CCCGATCGAATAAAGAGGAGGAATTCCTGCTCAAACTATTAGATTAGGGTTCTAATTCGACACCT
GCGCTTGTGTCAAATGTTCTTGCTTTTTTGTTCTACCTCTTCTGA


Right flanking sequence: Indices 1411336 -- 1411835
GATGGCTGATTTCTCTAGTAGCTTTGGCTGTCGCTGAGTGAAAAGGTTTTTTGTATCATCTTCTC
TTTACTTGAAAGAGGTACCTATGCCGCTACTTTCTTAGGGCCTGCGAAAGCCTTATGTATATCCC
TGCATGCTCGGTGACAACGATTCAACGTATGTTCTCTCGATAGGTATTGGCCCTTATAAATGGAC
TAAATGGATAAGTAAGGTCCTACTATCTCACTCCTACAGAGCCGTCCGACCCTGTCAACTCTTCG
ATTGGCCACTCGGCAATGTGAAAATAAGAGTGTAAATGGACTACTTCGGCTGGGCCTGCTACCAC
CTATCTCACTCCCGCCGGTTCATCTCAGAGGTCTACCCATGCATATGGTGGTCTCCACCTCTAGA
ATTCGAAAGAATGATCACTTTATATATAAGTCAACAAGAAGCCTCCACGAAATAATAGCATAAGA
GAAGAAGGCCAGTCTTTCGCATGAAGAAGGTGACGGAGCCGTCTC



Found at i:1414028 original size:17 final size:17

Alignment explanation


    Indices: 1414006--1414040  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

    1413996 TACGAAGGAG

                             
    1414006 CTTTAGAGATAGGCTAA
          1 CTTTAGAGATAGGCTAA

                             
    1414023 CTTTAGAGATAGGCTAA
          1 CTTTAGAGATAGGCTAA

             
    1414040 C
          1 C

    1414041 AGGAAAGGGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29


Consensus pattern (17 bp):   
CTTTAGAGATAGGCTAA

Left flanking sequence: Indices 1413506 -- 1414005
AATAGTATTTTACTACCAGGAATGCTATAATATATTCTAAGAGGCTTCTCATAGGCTAAAGACGA
GAATCAGTATTCATTCCGCCTAAGGAACGAAGTAGGCTCGGGATTGGGATCCGGTACTGTAATTG
GGTAAACATTCCTAACTTCTATTCTGATTTATTCATCGTTAATAAAGTAAGCTTTTATTGCAGCT
ATATGAGATGCACCAAATAGAATTAGACATGACATCGTAGAGTGAAAAGGGCATAATCTTTCATT
CTCTTCACACCTTCGACTTAAGGGCTAAAAAGGTAAGTTGCCGAACAGAGGACGTTTATGAATTG
GATCTATGACCCTGTAGATAGCTCTTTCTACGATCGGCTTTATATTCGGTTCAGTTCGAAGCGGG
AGCAGTCAATCCCGGAAACTAACACGATCTCGTCAAGAGAGAGTTGGTGGGAGCGGAAGTAGCGT
AGCCCATAACATAAGAAAAAGAGAACTGCTAACAGTACGAAGGAG


Right flanking sequence: Indices 1414041 -- 1414540
AGGAAAGGGTCCTATTAGGTGGTGGGAGAAGGGTCGGAAGGAGCTACTAGAAAGGCCGTCCTGTA
GCTGTAGCAACTGAGTCGACAAGATCCGCTGGATTGACTGAAAGGATAGGAGCGAAAGAAGGTGC
TCTTTTGAATGTGCTGGGCAGATAGCATCATTGCACCACTGAGCCCCTAACTCCTATGGAACCTA
CTGGCGAATGTTGTGTCACAACCCGAAAAGAGTCAAATGGAGAGGGAGCTAAGCAATGAGGTGGT
AGGGCTTAGCAGATCAGAGGCGATACACGGTAGATTCTATAGAAAGGTGCACAGGCGCCGCTGGA
CTGGAATCCATAACAACTTATCGAAGAAATTGCGTAAGTGATGTTCTTTTCGATCCATTTCCTTG
CTAAGAGACAGGTGGGATTAGTCTTAATGGAGTTGGCTTTCTTGAATGATGACAGCCCTCTTCCA
AGCTTGAATCATACGAACATAGTAGTAATTCCCAAGGTGGATTCC



Found at i:1416927 original size:6 final size:6

Alignment explanation


    Indices: 1416916--1416941  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

    1416906 AAACTCCCTA

                                          
    1416916 AGGAAT AGGAAT AGGAAT AGGAAT AG
          1 AGGAAT AGGAAT AGGAAT AGGAAT AG

    1416942 AATCACTCGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15


Consensus pattern (6 bp):   
AGGAAT

Left flanking sequence: Indices 1416416 -- 1416915
TCACATAGGAAAGACGCCAATCCTTGTTTTTCCTTCTTTTTGTCTCCGTACTTGGAGGACTTCCA
CTTGCTGTTCGAGAACTTCCCGCTGCCCCCATTACCACTCTTGGGTGACTTTTCCTTGTCTCCCC
CACCTTTGCCTTTGCCCCTCTCTTTGTGCTTGGGAGTGCTGTACTTTTCCAGCTTCTTAAACTCC
ACCAAGGACTCGGCTGCTGTCATGGCTCGGGTGAGATCTTGGACACCACGACGCTGCAATTCTTG
TTTTGCCTATGGCTTAAGTCCGTACATGAACTGGAAGAAGGCCTCCTTCTCCCCAAGATATGAAA
TTTTCAGCATCAACTCAGAGAATTACCGCACATACTACCGCACCTCGCCTCGCTGCGTGAGGCTA
AGCATCCAAATCGTCGAGCGGTCCTGTGGCTTATCGACTTGCTCTACCTCCTCTCCTGATCTATA
CTTTTTCCGCGCCTCATCTTCACTCCGGATATGTTAAACTCCCTA


Right flanking sequence: Indices 1416942 -- 1417441
AATCACTCGGTTGAAAATAGATTTGGAACTCTTACCATGTGTTGATGGCAGCACCTCCGTCACGT
CATTGCTCCTACGTCTCCACCACAAAAGAGCAATATCAACAAGATAGATAGAGTCGGTGCTTCCC
TTGGTATCATCATCCATGATGACCATCACAACTTTCGCTAAACACACTACTAAGCATATTCCACA
GATCCATCATCTACCGTAAGTCTTGTTCCATCCACCACAAGTAAGTTGTCCACGTCCTTCGCAGA
AAGGTTATTTCCCGGTATAATGCCAAGCGAGCCGTACCCTAGACGAGGCGGCAATCAATCCCATG
CCATGCTATACTCGACGCTCCATACCCCCCCTAATATTAATTAATAGATAATAGATGGTGTTGCT
GCCTTTTCGTTTCTTCCTTGAGAGTGGCTCGCCCTTAAAGGTCCATTTCAGGTATTTCTTGCACT
AAGGCAGTCTCACAGTCAGCATGTGGTGCTACAGCAGTGTAAGAA



Found at i:1423012 original size:24 final size:24

Alignment explanation


    Indices: 1422980--1423028  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1422970 AGTATGCAGA

                                    
    1422980 TAAAGGGATTCAGTCTTCTCTTGC
          1 TAAAGGGATTCAGTCTTCTCTTGC

                                    
    1423004 TAAAGGGATTCAGTCTTCTCTTGC
          1 TAAAGGGATTCAGTCTTCTCTTGC

             
    1423028 T
          1 T

    1423029 TCGGCAATGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39


Consensus pattern (24 bp):   
TAAAGGGATTCAGTCTTCTCTTGC

Left flanking sequence: Indices 1422480 -- 1422979
TCTTTCTTATCAAAGCCCTTTCTCGTTCCCTTGTACAGCCTTGACCAGGCAGTTTTCATTATGTC
TTCTTTGCAGTGTCTAGGGGGGTTAGGGGTGAGTTAAGCCAATGCGTACAAATAGACAGACCAGG
TTCATCCTTTTATGTTGAGGTCAGTGCAAGTCTGTCTATGATTAAGAGTCTAGGTGGTCTTGAAG
CTGGCTTATTCATGCTAGTCATCTTAGAGCTCAGAGTCAAAACAATGTTCACCAACTCTTCCATA
GTAATCTTGTTCATATTCATATATCGAAAAAGCTTTTAAAATATGAGTTTAAATTGTTATATTAA
AGTGTTTTGTCTCTTACCAAGGTAGCGTTGCCGAGCGGGCGATCCCTATACTTGTTTATCCAGCT
AGCTTTTCTCCGTGGTACTAAAATTCTATTTGTGAGAGCTCCTTTTGCTCGGCTTAAAGAAAGAA
TCTGGGTAGCACACAATCGAAGCGGTGTATGGGAAAGTATGCAGA


Right flanking sequence: Indices 1423029 -- 1423528
TCGGCAATGAATGAAGTAGATTCTTTGTTTCGTTCTCAAGGAATAGTAAACTACCCAACATCTAT
AACAAGTGAAACTCAACTATTCATTCTAGGGGAGCTGGAATGGCATAAAGGATAGATAGCTGCCT
TGCCTTTTTCGCTTGTTCTAGGGGACCTATATCTCTGGTCTGGGGTTCCCTTTCTCAGCACCATC
AGTCTTCAATAAAACCACATCTGTTGATGGCGGTGCACAAGCTATACACTGTTTACATACACCGT
TCGTGAGCCATAAGAAATAAGGACAGAAAGAATAACCTGCTATTCCACCCGCAAACAAACCCCTA
TTTGATTGGGTATTTAACTGCGAGGTATGAACTCGTCTCTGATAAAGCAGCAGAAGCGTCATCCT
CTCTTTCTATTTCATCTGGTTGAGTAACCGAATTCTTCTCCTTTCTTTACTTCGAGCTATAATGC
AGCGAGTGAACAGGCAACAAAAACAAGAAAGCAAAGAGAGAGATC



Found at i:1423853 original size:30 final size:30

Alignment explanation


    Indices: 1423817--1423890  Score: 121
    Period size: 30  Copynumber: 2.5  Consensus size: 30

    1423807 TTGGACCCTA

                                          
    1423817 GCCCCCTTCGCCTTTCGGCTCACCTTCTTT
          1 GCCCCCTTCGCCTTTCGGCTCACCTTCTTT

                                          
    1423847 GCCCCCTTCGCCTTTCGGCTCACCTTCTTT
          1 GCCCCCTTCGCCTTTCGGCTCACCTTCTTT

            *  *    *     
    1423877 TCCACCTTAGCCTT
          1 GCCCCCTTCGCCTT

    1423891 AGCCCAGTCT


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   41  1.00

ACGTcount: A:0.05, C:0.46, G:0.12, T:0.36


Consensus pattern (30 bp):   
GCCCCCTTCGCCTTTCGGCTCACCTTCTTT

Left flanking sequence: Indices 1423317 -- 1423816
AGAATAACCTGCTATTCCACCCGCAAACAAACCCCTATTTGATTGGGTATTTAACTGCGAGGTAT
GAACTCGTCTCTGATAAAGCAGCAGAAGCGTCATCCTCTCTTTCTATTTCATCTGGTTGAGTAAC
CGAATTCTTCTCCTTTCTTTACTTCGAGCTATAATGCAGCGAGTGAACAGGCAACAAAAACAAGA
AAGCAAAGAGAGAGATCCTTAACAAAACCCCAAGAAAAGTCCTACTCGTCTTATAAGAAGTAGGC
TCCGACTGCAAGACCTCACCCATATGCGGAAGGGGTACAAAGCACAATCTCTTCTATCAACTCGC
TAGCTAGCTGTTTCAAGTCTCTTTCTTGTTTCGGTTGGGTAATGAAATGAAATTCTGATTCTTCT
ATTCGTAGTTAGTTTAATAGCTGAAGAGTGAACAATTCCCCTTCGCTTTCTAATTGAAGAAAAGG
GAATTTCCTCTTTCGTATAATGAATTGCATCTCCTTTGGACCCTA


Right flanking sequence: Indices 1423891 -- 1424390
AGCCCAGTCTTTTTCCTTACTGCACTGCGTAACCCCTTTCTTCATAAATAAAGTAATCTCATAAA
GTAATCTATGCTGAAACAATAAACCTTACTTCCCCAACAGCTCTCTTGTTTGCTGACGGATCGCC
TTTCCTTTATCTCGAGAGCGGGTTGAGGTCTTTACGAGCCTCTTTCTTTCTTGAGAAGGTAATTC
AAATCTGAAGGGAGGGGCCATTGTCTATGTCACCCAAGCGTATATGGAAGAGGTGCGAGTCTATG
AGTAGAATGTGCTTCCTTTCTTTCTTATTGCTAGCCTGTCTAACGAGCTATATCCTTCCTTTTCC
TTAGCTTGTGCCTATTCCATGTCCATGGGCTTCTGGTAGTAGATTGGTAAACTCCGCCCCTAGTA
CTAGTAGGAGTTGCAGAAGTCTCTTTTTCTGTCTTAACCACGAAAGAAGGTGGAATTGAATCTCT
GGATCCGAGTAAGCCGGAAGAGCTATATTTAGAAAGCGAAGCAAT



Found at i:1423872 original size:18 final size:18

Alignment explanation


    Indices: 1423821--1423873  Score: 55
    Period size: 18  Copynumber: 3.3  Consensus size: 18

    1423811 ACCCTAGCCC

                              
    1423821 CCTTCGCCTTTCGGCTCA
          1 CCTTCGCCTTTCGGCTCA

                             *
    1423839 CCTT---CTTT--GC-CC
          1 CCTTCGCCTTTCGGCTCA

                              
    1423851 CCTTCGCCTTTCGGCTCA
          1 CCTTCGCCTTTCGGCTCA

                 
    1423869 CCTTC
          1 CCTTC

    1423874 TTTTCCACCT


Statistics
Matches: 27,  Mismatches: 2, Indels: 12
        0.66            0.05        0.29

Matches are distributed among these distances:
  12    5  0.19
  13    2  0.07
  15    8  0.30
  17    2  0.07
  18   10  0.37

ACGTcount: A:0.04, C:0.47, G:0.13, T:0.36


Consensus pattern (18 bp):   
CCTTCGCCTTTCGGCTCA

Left flanking sequence: Indices 1423321 -- 1423820
TAACCTGCTATTCCACCCGCAAACAAACCCCTATTTGATTGGGTATTTAACTGCGAGGTATGAAC
TCGTCTCTGATAAAGCAGCAGAAGCGTCATCCTCTCTTTCTATTTCATCTGGTTGAGTAACCGAA
TTCTTCTCCTTTCTTTACTTCGAGCTATAATGCAGCGAGTGAACAGGCAACAAAAACAAGAAAGC
AAAGAGAGAGATCCTTAACAAAACCCCAAGAAAAGTCCTACTCGTCTTATAAGAAGTAGGCTCCG
ACTGCAAGACCTCACCCATATGCGGAAGGGGTACAAAGCACAATCTCTTCTATCAACTCGCTAGC
TAGCTGTTTCAAGTCTCTTTCTTGTTTCGGTTGGGTAATGAAATGAAATTCTGATTCTTCTATTC
GTAGTTAGTTTAATAGCTGAAGAGTGAACAATTCCCCTTCGCTTTCTAATTGAAGAAAAGGGAAT
TTCCTCTTTCGTATAATGAATTGCATCTCCTTTGGACCCTAGCCC


Right flanking sequence: Indices 1423874 -- 1424373
TTTTCCACCTTAGCCTTAGCCCAGTCTTTTTCCTTACTGCACTGCGTAACCCCTTTCTTCATAAA
TAAAGTAATCTCATAAAGTAATCTATGCTGAAACAATAAACCTTACTTCCCCAACAGCTCTCTTG
TTTGCTGACGGATCGCCTTTCCTTTATCTCGAGAGCGGGTTGAGGTCTTTACGAGCCTCTTTCTT
TCTTGAGAAGGTAATTCAAATCTGAAGGGAGGGGCCATTGTCTATGTCACCCAAGCGTATATGGA
AGAGGTGCGAGTCTATGAGTAGAATGTGCTTCCTTTCTTTCTTATTGCTAGCCTGTCTAACGAGC
TATATCCTTCCTTTTCCTTAGCTTGTGCCTATTCCATGTCCATGGGCTTCTGGTAGTAGATTGGT
AAACTCCGCCCCTAGTACTAGTAGGAGTTGCAGAAGTCTCTTTTTCTGTCTTAACCACGAAAGAA
GGTGGAATTGAATCTCTGGATCCGAGTAAGCCGGAAGAGCTATAT



Found at i:1423956 original size:13 final size:13

Alignment explanation


    Indices: 1423938--1423962  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

    1423928 TTCTTCATAA

                         
    1423938 ATAAAGTAATCTC
          1 ATAAAGTAATCTC

                        
    1423951 ATAAAGTAATCT
          1 ATAAAGTAATCT

    1423963 ATGCTGAAAC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32


Consensus pattern (13 bp):   
ATAAAGTAATCTC

Left flanking sequence: Indices 1423438 -- 1423937
TTGAGTAACCGAATTCTTCTCCTTTCTTTACTTCGAGCTATAATGCAGCGAGTGAACAGGCAACA
AAAACAAGAAAGCAAAGAGAGAGATCCTTAACAAAACCCCAAGAAAAGTCCTACTCGTCTTATAA
GAAGTAGGCTCCGACTGCAAGACCTCACCCATATGCGGAAGGGGTACAAAGCACAATCTCTTCTA
TCAACTCGCTAGCTAGCTGTTTCAAGTCTCTTTCTTGTTTCGGTTGGGTAATGAAATGAAATTCT
GATTCTTCTATTCGTAGTTAGTTTAATAGCTGAAGAGTGAACAATTCCCCTTCGCTTTCTAATTG
AAGAAAAGGGAATTTCCTCTTTCGTATAATGAATTGCATCTCCTTTGGACCCTAGCCCCCTTCGC
CTTTCGGCTCACCTTCTTTGCCCCCTTCGCCTTTCGGCTCACCTTCTTTTCCACCTTAGCCTTAG
CCCAGTCTTTTTCCTTACTGCACTGCGTAACCCCTTTCTTCATAA


Right flanking sequence: Indices 1423963 -- 1424462
ATGCTGAAACAATAAACCTTACTTCCCCAACAGCTCTCTTGTTTGCTGACGGATCGCCTTTCCTT
TATCTCGAGAGCGGGTTGAGGTCTTTACGAGCCTCTTTCTTTCTTGAGAAGGTAATTCAAATCTG
AAGGGAGGGGCCATTGTCTATGTCACCCAAGCGTATATGGAAGAGGTGCGAGTCTATGAGTAGAA
TGTGCTTCCTTTCTTTCTTATTGCTAGCCTGTCTAACGAGCTATATCCTTCCTTTTCCTTAGCTT
GTGCCTATTCCATGTCCATGGGCTTCTGGTAGTAGATTGGTAAACTCCGCCCCTAGTACTAGTAG
GAGTTGCAGAAGTCTCTTTTTCTGTCTTAACCACGAAAGAAGGTGGAATTGAATCTCTGGATCCG
AGTAAGCCGGAAGAGCTATATTTAGAAAGCGAAGCAATAAATTAGGAAGTGGAAGAGATCAAGGG
GAAGCTCACGAATAGACGGTAATAGGCATAGGCACTACTTCTCCG



Found at i:1425402 original size:25 final size:21

Alignment explanation


    Indices: 1425376--1425418  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1425366 GTTTTTCCTT

                                 
    1425376 ATTTATGTATGAAGGTTAAGA
          1 ATTTATGTATGAAGGTTAAGA

                                 
    1425397 ATTTATGTATGAAGGTTAAGA
          1 ATTTATGTATGAAGGTTAAGA

             
    1425418 A
          1 A

    1425419 CCTATCCAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37


Consensus pattern (21 bp):   
ATTTATGTATGAAGGTTAAGA

Left flanking sequence: Indices 1424876 -- 1425375
TATTCCATCCGAGGTGGCTCCATACTAGATAGAACATTACCGTAGGAGCTCGCTTTTTGCTAGAC
AAGAGGGAGAGACCAGAACGGGGCTAGGATTCTAATACTGATAAAAGAGGGCTAGTATTCAATAA
CTAAAGTAAAAATAACCCATCTCCAGCCGTTGCCATCACCGAAGCTATCAACTTGTCTCTCAGTT
GGCTTGGCAGGGTTGCTAGGCTTGCCGAACAGTAAGGCTCAGAGTCAGCTCAATCGTAAGTAGCT
CCATGATTAGGCGCTGCCCTGTTCAATAAGTGGAATGCATTATCTGTCTGCTCTCATCTGCTTGA
CTTGCTTTTAAGGGGTACTACCCTACGAATAGAATCTATTCACTTTCCTCTGAGAAAGCAGCTTT
TTCAGCTTCGGGTAAAGTTAAGGATCTCTGTCTTCCTTTTGTTAATGATGGGCTGTTAGAAGGGA
TATATTCTTGAAACTCTCTATTCCTTTCTACCCGCGTTTTTCCTT


Right flanking sequence: Indices 1425419 -- 1425918
CCTATCCAAAACCTATCACATCTGACAACAATCAGTGGGGAAAGAGTTAAGTAATACCCATGGCA
GACAAAAATTAGTTTATAGAAAACCCACCTGCTTCATCGCCTCAGCCTCTTGTTGGTCTTGGTGT
TAATGCCGAGGTTGCAAGGGCGATTGGTGTCTAATCGTCTCTTTCCTCTCCTGAAAGGGGATTCT
TTCCTCATTCACTTCGAGCCATAGATCATCTAGACAGTGAGGAAGAAGTTGGAGGTCGAAATAGC
TAGCTCGTGAAATCAATATCCTAAAGCGGGATAACTTTCCATCTCTAAGGGTCTCATCAAAGGAA
AACCCCTTCTTCTTCTTACGTTAAGCGCTTTCGACCCTAAAGTAAAGGCAGATAAAGGATATCGC
TCTTCCTAATACTTTCTTCAGGCTATATCGCTCTTCCTAATACTTTCTTCAGGCTTGGGAATCAG
GGATTTATGGTATTCCCGAGAGCTCAACCAGATTATCTGATTCGA



Found at i:1425837 original size:31 final size:31

Alignment explanation


    Indices: 1425802--1425863  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

    1425792 CAGATAAAGG

                                           
    1425802 ATATCGCTCTTCCTAATACTTTCTTCAGGCT
          1 ATATCGCTCTTCCTAATACTTTCTTCAGGCT

                                           
    1425833 ATATCGCTCTTCCTAATACTTTCTTCAGGCT
          1 ATATCGCTCTTCCTAATACTTTCTTCAGGCT

    1425864 TGGGAATCAG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.19, C:0.29, G:0.10, T:0.42


Consensus pattern (31 bp):   
ATATCGCTCTTCCTAATACTTTCTTCAGGCT

Left flanking sequence: Indices 1425302 -- 1425801
TTTTGTTAATGATGGGCTGTTAGAAGGGATATATTCTTGAAACTCTCTATTCCTTTCTACCCGCG
TTTTTCCTTATTTATGTATGAAGGTTAAGAATTTATGTATGAAGGTTAAGAACCTATCCAAAACC
TATCACATCTGACAACAATCAGTGGGGAAAGAGTTAAGTAATACCCATGGCAGACAAAAATTAGT
TTATAGAAAACCCACCTGCTTCATCGCCTCAGCCTCTTGTTGGTCTTGGTGTTAATGCCGAGGTT
GCAAGGGCGATTGGTGTCTAATCGTCTCTTTCCTCTCCTGAAAGGGGATTCTTTCCTCATTCACT
TCGAGCCATAGATCATCTAGACAGTGAGGAAGAAGTTGGAGGTCGAAATAGCTAGCTCGTGAAAT
CAATATCCTAAAGCGGGATAACTTTCCATCTCTAAGGGTCTCATCAAAGGAAAACCCCTTCTTCT
TCTTACGTTAAGCGCTTTCGACCCTAAAGTAAAGGCAGATAAAGG


Right flanking sequence: Indices 1425864 -- 1426363
TGGGAATCAGGGATTTATGGTATTCCCGAGAGCTCAACCAGATTATCTGATTCGAGTGGATCTAT
TACACCGCTTATACTCCCTACTGCCGGGTATCTTTCCCCGTATGTAGAGTTGAAACTCCTCGACT
TAAGAGATTTAATAGCTCGTTTAACGGGTCATTCTTCGTTGATCAATACATATGGCTGACTCGCT
AAATGCCATTCCGCTTAGCCGATCCGGGTATGGGAAAGTAGGTTTACTTGCTTCCCGTGCAGCTA
ATCCTTCGAGCCTATTTTCTAAACCTGAAGTTAAATCCTTATGCAACTACACTATGGGGTCATAA
ACGAAGGGGCTCTTTCCGTAGGGTCCGAAGGTAAAAGCGAAGCGTATCGAAGCGAATAAGATGAC
GTAAGGAGAAGAGGTAAGGACCAACAGAGGGCAGAGAGTTTCAAGTTTGGGTTAAACCATAGGTG
AAAGATAGCCTACACAAGCTAGGCCTAACACAAGGTAATGATCCA



Found at i:1430491 original size:18 final size:18

Alignment explanation


    Indices: 1430468--1430503  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

    1430458 CCAGGCCAGA

                              
    1430468 GTAAGTCCTATTGTTTTT
          1 GTAAGTCCTATTGTTTTT

                              
    1430486 GTAAGTCCTATTGTTTTT
          1 GTAAGTCCTATTGTTTTT

    1430504 TTAGCCATTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.17, C:0.11, G:0.17, T:0.56


Consensus pattern (18 bp):   
GTAAGTCCTATTGTTTTT

Left flanking sequence: Indices 1429968 -- 1430467
GGAGAGGATGTTGCCAATTCAGATGTGGCAAAGGGTCAGCATGGTGTGGCACCTTCTAGGCATGT
AAGAAATCCTAGCCAACCATCACGTGGAAAAGTGCATGCAAATTTATCACGTAATAGATCGAGTG
GGAGAGATAGTATGAGGTTACGTGATCCTTCCTTTAAAGCCGTTGGGCTTTTTCCCGTCAAATCT
TAAAAAGAAGATGAAGGAGACAGTCTCGAAGACACTGGAGCCAACTGGGACCGATCCAACTCTTT
CTCATGTCTTGCCTTCTGTGCTCGAATCTACCCCGTCCACCTCAATTGTTCCCTCTATTCCTTTA
AGCCCCAATTCCAAGTAACCCGGGGGTTCTATCGTAATGCATGACTACTCCAGAGGATGCAGTAG
TGTAGTGAGCACTTTTAGGGGCCAATGAAGCAAAGCCTTTCCTCCTCTCCTTTTATCTGCCTTGA
GTGAGTAAGAAGGGAAGGAAGGGTAAGTGAGTTGGCCAGGCCAGA


Right flanking sequence: Indices 1430504 -- 1431003
TTAGCCATTAACAATAAGAAAGCTTTTCCTCATTCAAGTCAACCAGAGTGATTTGACTTTCTTCT
TTCTGACGTGTGGTTTTCCTATGATAAAAGCGAAACGTATCGAAGCGAATAAAATAAAAGTACTC
GAAATCCCATACCTGATTCCCAAGCTAAATCCTTTATTTAGTCCGGCCTATCGTGTATGGCATCG
GATCATGGGGTTTCCGAAGTAGCTATCTCCCCTTTTTAACTCTTGGGTTTTTAGTTAAGGGTCTC
TCTTCCATTCACTTGCATCGCTTACTCTTATTAGATACCTCACTCAGCCCTATCCAACTATGGTG
GAATAAGAACGCGCAGGGGACAATACGAACGCTCATGGGACAAGGACCAGGTCGGAAGCAAGAAC
TTCATCTGCTTGAGCTGCTCCTGTTGAATGAGTTGAAGGCGATCTCTAATGGCCCATAATTCAGA
AGCAAGGCTGGTACTAGTGCCCAGTTTTCGTCTGAACCCTGCTAG



Found at i:1430858 original size:20 final size:20

Alignment explanation


    Indices: 1430830--1430871  Score: 57
    Period size: 20  Copynumber: 2.1  Consensus size: 20

    1430820 ACTATGGTGG

                                
    1430830 AATAAGAACGCGCAGGGGAC
          1 AATAAGAACGCGCAGGGGAC

                *      *  *     
    1430850 AATACGAACGCTCATGGGAC
          1 AATAAGAACGCGCAGGGGAC

              
    1430870 AA
          1 AA

    1430872 GGACCAGGTC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.40, C:0.21, G:0.29, T:0.10


Consensus pattern (20 bp):   
AATAAGAACGCGCAGGGGAC

Left flanking sequence: Indices 1430330 -- 1430829
TGCATGACTACTCCAGAGGATGCAGTAGTGTAGTGAGCACTTTTAGGGGCCAATGAAGCAAAGCC
TTTCCTCCTCTCCTTTTATCTGCCTTGAGTGAGTAAGAAGGGAAGGAAGGGTAAGTGAGTTGGCC
AGGCCAGAGTAAGTCCTATTGTTTTTGTAAGTCCTATTGTTTTTTTAGCCATTAACAATAAGAAA
GCTTTTCCTCATTCAAGTCAACCAGAGTGATTTGACTTTCTTCTTTCTGACGTGTGGTTTTCCTA
TGATAAAAGCGAAACGTATCGAAGCGAATAAAATAAAAGTACTCGAAATCCCATACCTGATTCCC
AAGCTAAATCCTTTATTTAGTCCGGCCTATCGTGTATGGCATCGGATCATGGGGTTTCCGAAGTA
GCTATCTCCCCTTTTTAACTCTTGGGTTTTTAGTTAAGGGTCTCTCTTCCATTCACTTGCATCGC
TTACTCTTATTAGATACCTCACTCAGCCCTATCCAACTATGGTGG


Right flanking sequence: Indices 1430872 -- 1431371
GGACCAGGTCGGAAGCAAGAACTTCATCTGCTTGAGCTGCTCCTGTTGAATGAGTTGAAGGCGAT
CTCTAATGGCCCATAATTCAGAAGCAAGGCTGGTACTAGTGCCCAGTTTTCGTCTGAACCCTGCT
AGCAAATTGCCAAACTGATCACGGCTGAGGCCTCCAGCTCCTGCAAAAGCAAGGGCAGATCCATC
CGTGTTGAGTTTTCATAAATTTTCTGGACCAAAAAAGGATAGTCTGAGTGTTGGGAAGCTGCTTG
GGGGGATGGACTGCAAAGACTTCACCAGCTGCATCGTTAATAGAAATAAGAGGATCTTGTAAGAT
TCTGTCAGAAGGTAAAATGCTGGAATTTATAGTGATCCATATCTTCCATAAGGCCATTAAGAATA
TGTAGTTCCATGAAATTTTATGTGAGCCCGGGGATACTTTGCTGCAACTCTTGTCTTTAAGCCAT
TTTTGGAAGTCCATTTGAAAGAAGGATTGGTCAGGAGGCTTGAGT



Found at i:1433991 original size:13 final size:14

Alignment explanation


    Indices: 1433963--1433991  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

    1433953 GGGAATGATG

                          
    1433963 AATAGCTTTCCTTC
          1 AATAGCTTTCCTTC

                          
    1433977 AATAGCTTT-CTTC
          1 AATAGCTTTCCTTC

              
    1433990 AA
          1 AA

    1433992 GAATCAATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41


Consensus pattern (14 bp):   
AATAGCTTTCCTTC

Left flanking sequence: Indices 1433463 -- 1433962
GACTGAACCCTTTTACCCTATCGATCGAAGGAAAGAAAAACATTCAGAGAAAATTAGTTAGTATG
TATGATTGAGTGCGCATTGATGGCGTCGATTGCCTCTCGAGATCTCCGTTTCCTGTTGACTTTGC
TGAGGAGTAATACGTAGGGGAAAAATCTCTTCAATAGGTAAATCGTTCGGGAATGATTAGATGAT
TATGAGATTCGGAGTTTGCCTTTTATGCTAGGCAGCGAGTTGGTTTACTTTCAAAAATTGAATTA
AAAATCGTTAATAGAGTGCCATCCACTAGTTACGATTCCACAGCTGATTCTCAAGCTGTCTCTTT
AAGCTGTTTTTCTTTGGGGAATACCCTTACTGCCCAACCTGACTAGCGAAATCTTTCCTTTGAAT
CGGTTGTAGCGGATTCTCTTACCCGTCCTGGATCCGGTTATGAGAAGGAGTTAGCCTTGAACAGC
TAAAAACCAGATTTAAGTGATTCATCTGATGACTTGGGAATGATG


Right flanking sequence: Indices 1433992 -- 1434491
GAATCAATTGCTTTCATCCCCTTGGGAAACCTCAACCGAAACCTCAAAACAAAACCTCGAAATCA
AGAACGAAAGCAATACCGCTTACCGGAAAGGAACTTCAGGCACTAGCGATAGCCGATTCTAGAGC
TAAGGGGAGATTGTCGTGCTTCTTCCTGGGCATATGCCGGGGAATCTAGACCTTTTAGGCAAATA
TTGGATTTGGAGCCAAAGTATGATTCAGAGCTCACCTTCAATAGCGGATGAATAAAAGGAAGTCA
GGAATCCTAAGGAAGAGAGAGATACAACCCCGACTGCTTTTGCAGTGGGCGGGAAGAGAGTAGCT
ACCGAAAAGCTATAACTTGATAGCAGAACAAGGAGCTCTCTCAAGGTTGCAGATTAGTTTCTTGA
GAAAAGGCCAGCCAAGAGATTGACTTATATATAATTGGCTTCTTTAGAGTGCCATAAGGAGATTC
CTGACCAGCAATAGACAATAAAAACAAGACGAAAGAAAGCACAAA



Found at i:1436497 original size:24 final size:24

Alignment explanation


    Indices: 1436469--1436516  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1436459 AAGAGTCCGA

                                    
    1436469 CTCAATCCCTTAACTCGCATTCGG
          1 CTCAATCCCTTAACTCGCATTCGG

                                    
    1436493 CTCAATCCCTTAACTCGCATTCGG
          1 CTCAATCCCTTAACTCGCATTCGG

    1436517 GACCGGACTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.21, C:0.38, G:0.12, T:0.29


Consensus pattern (24 bp):   
CTCAATCCCTTAACTCGCATTCGG

Left flanking sequence: Indices 1435969 -- 1436468
AGGAGCAAAACCTTACTCGATGTATTTCCCTCGGAGAGATAATTGCAAATTCTATTTTTTGAGTC
CGCTATAGCGGCAAAAGTCTTCATTTTTAACGATTTTGAATTCAATTTGTTACCGGAAATCGATA
AGTAAGCAAAAATACGGTGTTTATTAAAAGTGATCTATTTCGAATGAGCTTTGTTACCTGAAAAG
TAAAAGTACCCCTTTTTTACGGGGTTGTAGAAAATGCTTAACCCAACAACCGAGCGAGGAGTCTT
CTTTAATGAACTTGCAGAGGGGGCAGACGCATCTAACCGTTGAATCTTTTCCCGTCTTAAAAGCA
GGTAAGCATTCGCCATTATCGGATACTGGCAGATCAATCCCTTACTAATTAATTGGTGGTTATGC
AAGTGAATAGGCAAGATGAGCAGTTAGCTAGGATTCAATAGCTTCAGAGGAAATTCCTGTAAATC
AGGATGTTTTTCCGGTACCGAAAGTGACTTAAAGAAAGAGTCCGA


Right flanking sequence: Indices 1436517 -- 1437016
GACCGGACTTGAGTAACCGAGGCAACTACCGGTGCCGGAGCTTGTGAAACCGGACGATATTCATA
CCAGTGCCGGAGCTTGTGAAACCGGACGATATTCATACCAGACGATCTTTACTCTGTGTTCACAC
CACCAACAGGTCTCACCGGACACAATTCTGCTCTATGACCAGGAGGACTTGGCCTGAGAAAGATG
GAACATCATAATAATGCCTTGCTTCAAAAAACCGCATGGCGACTTCTGATGGAACCTAACAGTCT
GTGGGTGCGTGTATTCAAAGCCAAATACAAGGTGCCCGATGATGTGGTGAAATTTCCATCTTTGG
TGCATGAAAATAAGGCCATAAACCAGGTCTAGAAAACCAGTCTATGATGAAGAAAAATCCAACTT
AAGGCTGTCTTTCAAGAGGGTTAAAGTCCGATTCTTCCTTGTTCTGGAAAGGATTGTCTATTGTT
AGTCAGTCTAGTTAATCAAGATGAGAGAAGAGATTATACCACTAG



Found at i:1436589 original size:37 final size:37

Alignment explanation


    Indices: 1436543--1436622  Score: 151
    Period size: 37  Copynumber: 2.2  Consensus size: 37

    1436533 CCGAGGCAAC

                *                                
    1436543 TACCGGTGCCGGAGCTTGTGAAACCGGACGATATTCA
          1 TACCAGTGCCGGAGCTTGTGAAACCGGACGATATTCA

                                                 
    1436580 TACCAGTGCCGGAGCTTGTGAAACCGGACGATATTCA
          1 TACCAGTGCCGGAGCTTGTGAAACCGGACGATATTCA

                  
    1436617 TACCAG
          1 TACCAG

    1436623 ACGATCTTTA


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  37   42  1.00

ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21


Consensus pattern (37 bp):   
TACCAGTGCCGGAGCTTGTGAAACCGGACGATATTCA

Left flanking sequence: Indices 1436043 -- 1436542
GGCAAAAGTCTTCATTTTTAACGATTTTGAATTCAATTTGTTACCGGAAATCGATAAGTAAGCAA
AAATACGGTGTTTATTAAAAGTGATCTATTTCGAATGAGCTTTGTTACCTGAAAAGTAAAAGTAC
CCCTTTTTTACGGGGTTGTAGAAAATGCTTAACCCAACAACCGAGCGAGGAGTCTTCTTTAATGA
ACTTGCAGAGGGGGCAGACGCATCTAACCGTTGAATCTTTTCCCGTCTTAAAAGCAGGTAAGCAT
TCGCCATTATCGGATACTGGCAGATCAATCCCTTACTAATTAATTGGTGGTTATGCAAGTGAATA
GGCAAGATGAGCAGTTAGCTAGGATTCAATAGCTTCAGAGGAAATTCCTGTAAATCAGGATGTTT
TTCCGGTACCGAAAGTGACTTAAAGAAAGAGTCCGACTCAATCCCTTAACTCGCATTCGGCTCAA
TCCCTTAACTCGCATTCGGGACCGGACTTGAGTAACCGAGGCAAC


Right flanking sequence: Indices 1436623 -- 1437122
ACGATCTTTACTCTGTGTTCACACCACCAACAGGTCTCACCGGACACAATTCTGCTCTATGACCA
GGAGGACTTGGCCTGAGAAAGATGGAACATCATAATAATGCCTTGCTTCAAAAAACCGCATGGCG
ACTTCTGATGGAACCTAACAGTCTGTGGGTGCGTGTATTCAAAGCCAAATACAAGGTGCCCGATG
ATGTGGTGAAATTTCCATCTTTGGTGCATGAAAATAAGGCCATAAACCAGGTCTAGAAAACCAGT
CTATGATGAAGAAAAATCCAACTTAAGGCTGTCTTTCAAGAGGGTTAAAGTCCGATTCTTCCTTG
TTCTGGAAAGGATTGTCTATTGTTAGTCAGTCTAGTTAATCAAGATGAGAGAAGAGATTATACCA
CTAGATGAGAGAAGAGATTATACCACTTCGGTAACCCCAGCATCAACACCAACAGTTTAGTTTAA
CGATGGTTTTCTTGAGTTTTTGCTTTGTCTGCCAGGGGTCAACAC



Found at i:1437024 original size:25 final size:25

Alignment explanation


    Indices: 1436990--1437039  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1436980 TAGTTAATCA

                                     
    1436990 AGATGAGAGAAGAGATTATACCACT
          1 AGATGAGAGAAGAGATTATACCACT

                                     
    1437015 AGATGAGAGAAGAGATTATACCACT
          1 AGATGAGAGAAGAGATTATACCACT

    1437040 TCGGTAACCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.44, C:0.12, G:0.24, T:0.20


Consensus pattern (25 bp):   
AGATGAGAGAAGAGATTATACCACT

Left flanking sequence: Indices 1436490 -- 1436989
CGGCTCAATCCCTTAACTCGCATTCGGGACCGGACTTGAGTAACCGAGGCAACTACCGGTGCCGG
AGCTTGTGAAACCGGACGATATTCATACCAGTGCCGGAGCTTGTGAAACCGGACGATATTCATAC
CAGACGATCTTTACTCTGTGTTCACACCACCAACAGGTCTCACCGGACACAATTCTGCTCTATGA
CCAGGAGGACTTGGCCTGAGAAAGATGGAACATCATAATAATGCCTTGCTTCAAAAAACCGCATG
GCGACTTCTGATGGAACCTAACAGTCTGTGGGTGCGTGTATTCAAAGCCAAATACAAGGTGCCCG
ATGATGTGGTGAAATTTCCATCTTTGGTGCATGAAAATAAGGCCATAAACCAGGTCTAGAAAACC
AGTCTATGATGAAGAAAAATCCAACTTAAGGCTGTCTTTCAAGAGGGTTAAAGTCCGATTCTTCC
TTGTTCTGGAAAGGATTGTCTATTGTTAGTCAGTCTAGTTAATCA


Right flanking sequence: Indices 1437040 -- 1437539
TCGGTAACCCCAGCATCAACACCAACAGTTTAGTTTAACGATGGTTTTCTTGAGTTTTTGCTTTG
TCTGCCAGGGGTCAACACTAGTTCCTCACTGATTGTTGTCAGATGTGAGAGGGAAGGGAAGAGAC
CAGCCTTTATTAAATTAAGTACCGGAAACGAAAGCGCCTTTAATAAGACTTCCAGGTCTTGCTCG
AGAGAAAGTCCTCATCTTGTCTGATGTTGATGAATTGGCTAAGGCTTTCTGGTCTTCTCCAGAGT
CAGAGGAGTTAGTTGCACCGCTTAGTTTGGACTAGGTTCGTAATGCGGTCTTCGCATAGAGAAAA
GGGCCGACTTACCTTCTTCAATAGTAAAGGGTACCACCAACGCCTCCCTTTCATACAAATTTATC
AGGGGCTGTCAACGGTACAAAGGATCACTCAAGGGTAAAACTTCCTTGTCATCAAAAAGAATCTT
ATAGAAATTGACAGCGTGCTGTTTTAACTGATCCGAATCATCCAC



Found at i:1439155 original size:16 final size:16

Alignment explanation


    Indices: 1439134--1439166  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

    1439124 TAGCTGCAGA

                            
    1439134 ACTCTAGCTTCACTTC
          1 ACTCTAGCTTCACTTC

                            
    1439150 ACTCTAGCTTCACTTC
          1 ACTCTAGCTTCACTTC

             
    1439166 A
          1 A

    1439167 AAGGCTCGAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36


Consensus pattern (16 bp):   
ACTCTAGCTTCACTTC

Left flanking sequence: Indices 1438634 -- 1439133
CCTCGTCAATTCCATGAGAGAACTTTCATTTGGATAAATGAAAATCGGAATGCACCACTTGCTCA
GCAAGTTCGGAGTCAATAACAACAATCTGTTGTGAGGCAACCTGTGATGGAGTTTCACCATCACC
CATACTAATCTCTCCTCCCGTCGCAAGATCGTTTTGGGGAGCAACAACATTCTCGCCCATGTCAA
TGTCGGGTGGCTTTGGAGCAGGTTTCGATGTAAGATCCCGAAGAAACTCCTCTGGAGCTGCCAAC
CTGTTCTCCAACGTTATAGGAAATTCTGAAATTGCAGAGAGTGAGCTAGGTTTAGGAATCGGAAC
AACAAGTAAGGAAATTTTGGGTAACCAGGCTTTGATATCCTTAGTAGGCTGGGATTGGGCCTTGT
CAATCTTACGAATAGGCCCAACTTTGACATGTGAAGGGTGCGAGTAGGGCTTTGCTCTCTCAACT
GACTTCTTTCTGTACGTACCTATAACTCATAGGAATAGCTGCAGA


Right flanking sequence: Indices 1439167 -- 1439666
AAGGCTCGACGCTCGAAAGGATATAGATAGAGTGGGAGTTTGATGAGACCTTTAGATAGATTGTC
GCTTTCTTTAGATAGATTGTCGCTTTCGAGACTTACTCTCACTTTTATTAAGGTGGTAGGTCTTA
CTTATTCTTAGATGATTCTGAAACAAACCCACCAATTACTAGAAGACTAGAAGAGCTAGTACCTT
TAGCCCAAAGAAAGACAATTGGATTTTAGGATTCATTCCTTGATTCTCTATTCTCAATCGCGAAA
AATTAGTACTTTTTCTTTCCGATGAGATAACAAGTTCACAGGTAGAAATCAGACGATACGCCGAA
AGCAGAAGAAGACTCAATCCCTTTTTCGGGTTTAGTTCTTGCTGTTACGGCTGAAGCCAAATCCG
AATACGGAGCAGATTGAGCTACTCAACTGTCGATTTAGATAAGAAATCTCTAATCGATTCTATGA
ACTTTCATAAATCATTCACTCGCTCGAAGAAGCTCAATCCTTTCT



Found at i:1439242 original size:21 final size:21

Alignment explanation


    Indices: 1439216--1439258  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1439206 TTGATGAGAC

                                 
    1439216 CTTTAGATAGATTGTCGCTTT
          1 CTTTAGATAGATTGTCGCTTT

                                 
    1439237 CTTTAGATAGATTGTCGCTTT
          1 CTTTAGATAGATTGTCGCTTT

             
    1439258 C
          1 C

    1439259 GAGACTTACT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.19, C:0.16, G:0.19, T:0.47


Consensus pattern (21 bp):   
CTTTAGATAGATTGTCGCTTT

Left flanking sequence: Indices 1438716 -- 1439215
AACAACAATCTGTTGTGAGGCAACCTGTGATGGAGTTTCACCATCACCCATACTAATCTCTCCTC
CCGTCGCAAGATCGTTTTGGGGAGCAACAACATTCTCGCCCATGTCAATGTCGGGTGGCTTTGGA
GCAGGTTTCGATGTAAGATCCCGAAGAAACTCCTCTGGAGCTGCCAACCTGTTCTCCAACGTTAT
AGGAAATTCTGAAATTGCAGAGAGTGAGCTAGGTTTAGGAATCGGAACAACAAGTAAGGAAATTT
TGGGTAACCAGGCTTTGATATCCTTAGTAGGCTGGGATTGGGCCTTGTCAATCTTACGAATAGGC
CCAACTTTGACATGTGAAGGGTGCGAGTAGGGCTTTGCTCTCTCAACTGACTTCTTTCTGTACGT
ACCTATAACTCATAGGAATAGCTGCAGAACTCTAGCTTCACTTCACTCTAGCTTCACTTCAAAGG
CTCGACGCTCGAAAGGATATAGATAGAGTGGGAGTTTGATGAGAC


Right flanking sequence: Indices 1439259 -- 1439758
GAGACTTACTCTCACTTTTATTAAGGTGGTAGGTCTTACTTATTCTTAGATGATTCTGAAACAAA
CCCACCAATTACTAGAAGACTAGAAGAGCTAGTACCTTTAGCCCAAAGAAAGACAATTGGATTTT
AGGATTCATTCCTTGATTCTCTATTCTCAATCGCGAAAAATTAGTACTTTTTCTTTCCGATGAGA
TAACAAGTTCACAGGTAGAAATCAGACGATACGCCGAAAGCAGAAGAAGACTCAATCCCTTTTTC
GGGTTTAGTTCTTGCTGTTACGGCTGAAGCCAAATCCGAATACGGAGCAGATTGAGCTACTCAAC
TGTCGATTTAGATAAGAAATCTCTAATCGATTCTATGAACTTTCATAAATCATTCACTCGCTCGA
AGAAGCTCAATCCTTTCTAGTTTCCTTGGGGTGGATCTCTCTTCTCTTTCTATTGATCGCGGGCA
TGTTCTCGCACTAAAGTAGCTTTCCTTCCCGGTCTTTCCATGGCC



Found at i:1441390 original size:25 final size:25

Alignment explanation


    Indices: 1441356--1441405  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1441346 CAGAAGCATA

                                     
    1441356 AGCAAGAAAGAGTCCGACTTATTCG
          1 AGCAAGAAAGAGTCCGACTTATTCG

                                     
    1441381 AGCAAGAAAGAGTCCGACTTATTCG
          1 AGCAAGAAAGAGTCCGACTTATTCG

    1441406 CTTCCCCTCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20


Consensus pattern (25 bp):   
AGCAAGAAAGAGTCCGACTTATTCG

Left flanking sequence: Indices 1440856 -- 1441355
GAGACGGAATGTAGGTTGAGAGTGGGTCTCTATCCCATCCTTCACTCTCTTCGCCTGGCATGGAT
GATGAAGATGTCAGATTTCGGAAACCACCTGATGAGAATGCTCATAATACAATGGTTCCTGAAAC
TCAACTTATGGATGATACTCGTGGTGTTGCTAATGCTCAAGACAATATGGTCTTGGAATCCTCTT
CTCCGTCTTTTGTTTATGAGTCTCATTTTATGGAACAGAAGAGTTGCGGGCTGGGCTAAGCTACT
TTGCTCTTTTTAAAGTCCGCCTATGGGATCACCTCTAGGAAAGAAAAAGGAAGAGACCCGTAAGC
GTAAGAAAGACGGGAAAACATCAAACTGATATTTCAACAATCATTATACGAAATTGATATCGGTT
GCGCAAATAAAACAGGAAGAGTCTTTTCTTCACCCATTCCCTTACCGGTTGAGCAAGCAAATAGA
ACCCGAAGCAATAAAGAGGCTCTATCCAAGGAAACCAGAAGCATA


Right flanking sequence: Indices 1441406 -- 1441905
CTTCCCCTCCGCGCTAGTGCCTGATCTTGCTTTGAAGGTTTCGGTAGGGGCTTAACTTAAAGACT
TTGACTCTGAAGCTCAATCCTTTATTTAGTCCGGACTTGAGTATTAGTCTGGCTCTTTCCTGCCG
AGTCTTTTAGGTAAGGCCTATTCTCTTCCATAAGCGGATCCAATCCCTAGCCTCGAATCAGACTT
ATTGTCGAAAGCGATTCTATGGCTAAAGTTAGAGGCCTTCTTTATAGCCCCGTCTTTTTCAGTAT
AACGTCAATTCCCGCTAATAAAGCTCGAAATAAATCGTTAGCAAAGTAAGCTTTTTCAGGGGAAG
CAGCATAAGTGGCATAATTGCTAAATCAGTTCCCTCTTTCTCTACCTTTATCTCTAGAGACAGGC
CAGGCTCGCAAGCTAATAATAGGTATTCCTGTCTAGCCTAGCCTTTCTGTCACTTATCCTAAGGC
TGATAATTCTAAGCGTTTAGTAAGGCTAACTCCTACTCCTAACTC



Found at i:1449340 original size:30 final size:30

Alignment explanation


    Indices: 1449306--1449365  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

    1449296 GGGGATTTAT

                                          
    1449306 TGAGTTAGGAGGTTGATGAAACTCTTTTGA
          1 TGAGTTAGGAGGTTGATGAAACTCTTTTGA

                                          
    1449336 TGAGTTAGGAGGTTGATGAAACTCTTTTGA
          1 TGAGTTAGGAGGTTGATGAAACTCTTTTGA

    1449366 AGGCAGCCGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.27, C:0.07, G:0.30, T:0.37


Consensus pattern (30 bp):   
TGAGTTAGGAGGTTGATGAAACTCTTTTGA

Left flanking sequence: Indices 1448806 -- 1449305
CATTTTTGTCATTTTCTTTGTGTTTTGCATATTCGGTCTTTATTTATGCTTATTCCATGCTTTTA
TTCTTTAAGCATGCTCTCCATCTTGTTTTTGCCATGATCAGCATTCAGTTTTTGGTTAGGTTGAG
AAGTGCTTTGATAACCTTCGTGGTACCAATTAAGGTCCCCGTATGGGTGTACACACCTCCACTCA
AATCGAAGCCTTTTCAATGATCCTAGAGTGGGCGAGAATTGGGAACCTTACTAGAAAAATTAATG
TGCGACAGTAAGGGCGGTTTCCATGGTTTGAGTATGATCATATCAAATGGTTCTTCTCAGCCGAA
CAGAAGAAGCGGGGTAATTGCTTGAAGGAAGGGTTTGTGCCGACTCTGCCATAGAAAATTCACTT
AGACCTCCGGCAGAATAAGGATCTGAAAGAGCTTATCGACATTTGGGGACAGATGTCTGATGACC
GAAAAGCTAGGTTTGAGCGCCTATATGGACACATTGGGGATTTAT


Right flanking sequence: Indices 1449366 -- 1449865
AGGCAGCCGTCTACTTTTGGGATCTTTCGTATAGGTCTTTCGTCTTCAATGAGGTGGACATGACC
CCGACTGTGGAAGAATACAGAGATATGTTGCAAGTCGGCGCTAAGCCAGATGATAAAGTATATTT
TCCAACAAAGAATTCTAAGTGGGATACTAAGTTGGCAAAGGTTCTCCGAAAGGAAGTGGAAATAG
TCAGGGGGGATGCTCAGATGGAAGGAAAGCGGATTGCAGCAACTTATCTTATAAACTTTGTAAAA
AAGAACCTACAGGTGGATAAGGCTTTGAAGGCTTTCGCTTTACTCATATATGCCTTGGTGATATT
TACGATATGGGGTATGTAAATGCAGCAACTATTGACTTATTTGAGCAAGTCTCTCATAGAGCGGA
TCCGTCAGCTACCATAGTGGGAGAAAGCATGATTTCGTTGCATCACTGCAGAAAGAACGGTGAAG
GTCGCTTTATGGGATCAACTACTTAGCTTGTGGTTCCGAAGCCAT



Found at i:1458666 original size:309 final size:308

Alignment explanation


    Indices: 1458106--1458728  Score: 1228
    Period size: 309  Copynumber: 2.0  Consensus size: 308

    1458096 AATTCAGCTT

                                                                             
    1458106 CCAAGCTGCTTGTGACACCTATATGAACCATAAATCTGGTTACCCAATTGCCAGAAGCATCTCGG
          1 CCAAGCTGCTTGTGACACCTATATGAACCATAAATCTGGTTACCCAATTGCCAGAAGCATCTCGG

                                                                             
    1458171 ATAAGTCCACCTGCAGAGGCATGGTTATCCGTTTGTCGGCGAGAACCATACGAATTTAACAATAA
         66 ATAAGTCCACCTGCAGAGGCATGGTTATCCGTTTGTCGGCGAGAACCATACGAATTTAACAATAA

                                                                             
    1458236 ACAACCATCAGGAGGGAGTTGCCATTTAATTAACTGTCCCGAGGCACCACCCGACTCCTTACTAG
        131 ACAACCATCAGGAGGGAGTTGCCATTTAATTAACTGTCCCGAGGCACCACCCGACTCCTTACTAG

                                                                             
    1458301 GAAAAAACACCTGGCCAGCCTCCATCGTGAGCTTCACTGCATAAGAAATAATCTCTTACGCTACT
        196 GAAAAAACACCTGGCCAGCCTCCATCGTGAGCTTCACTGCATAAGAAATAATCTCTTACGCTACT

                                                            
    1458366 GGAGCCTTTGCATTAAAAGCTAGCTCATTTCGAGCTTTACACATACCC
        261 GGAGCCTTTGCATTAAAAGCTAGCTCATTTCGAGCTTTACACATACCC

                                                                             
    1458414 CNCAAGCTGCTTGTGACACCTATATGAACCATAAATCTGGTTACCCAATTGCCAGAAGCATCTCG
          1 C-CAAGCTGCTTGTGACACCTATATGAACCATAAATCTGGTTACCCAATTGCCAGAAGCATCTCG

                                                                             
    1458479 GATAAGTCCACCTGCAGAGGCATGGTTATCCGTTTGTCGGCGAGAACCATACGAATTTAACAATA
         65 GATAAGTCCACCTGCAGAGGCATGGTTATCCGTTTGTCGGCGAGAACCATACGAATTTAACAATA

                                                                             
    1458544 AACAACCATCAGGAGGGAGTTGCCATTTAATTAACTGTCCCGAGGCACCACCCGACTCCTTACTA
        130 AACAACCATCAGGAGGGAGTTGCCATTTAATTAACTGTCCCGAGGCACCACCCGACTCCTTACTA

                                                                             
    1458609 GGAAAAAACACCTGGCCAGCCTCCATCGTGAGCTTCACTGCATAAGAAATAATCTCTTACGCTAC
        195 GGAAAAAACACCTGGCCAGCCTCCATCGTGAGCTTCACTGCATAAGAAATAATCTCTTACGCTAC

                                                             
    1458674 TGGAGCCTTTGCATTAAAAGCTAGCTCATTTCGAGCTTTACACATACCC
        260 TGGAGCCTTTGCATTAAAAGCTAGCTCATTTCGAGCTTTACACATACCC

             *    
    1458723 CAAAGC
          1 CCAAGC

    1458729 AATAGAGGAA


Statistics
Matches: 313,  Mismatches: 1, Indels: 2
        0.99            0.00        0.01

Matches are distributed among these distances:
 308    5  0.02
 309  308  0.98

ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24


Consensus pattern (308 bp):   
CCAAGCTGCTTGTGACACCTATATGAACCATAAATCTGGTTACCCAATTGCCAGAAGCATCTCGG
ATAAGTCCACCTGCAGAGGCATGGTTATCCGTTTGTCGGCGAGAACCATACGAATTTAACAATAA
ACAACCATCAGGAGGGAGTTGCCATTTAATTAACTGTCCCGAGGCACCACCCGACTCCTTACTAG
GAAAAAACACCTGGCCAGCCTCCATCGTGAGCTTCACTGCATAAGAAATAATCTCTTACGCTACT
GGAGCCTTTGCATTAAAAGCTAGCTCATTTCGAGCTTTACACATACCC

Left flanking sequence: Indices 1457606 -- 1458105
GGATATCCTTTGTAATAGGTACTCGCCTTCTGTATCTAGTCCAGCGTCAGTCTTTATTCACGGGA
TAGGCTATCAATTCGGTTCCGTAGTTCGAACAATTTCCTTTAGCGAATAGGGGTTAGGAGTACCC
CATGAGAGTGTATCTGCCACTAGATCCGGGTCAATTGAACTACCTTTGCCACCAATACCAATTTC
GTATAATGATTGCTTAACATCCCAAACATCTTCATAGGCGAGGAGTCTGAAAGAGTTCAACTCAA
TAGGTGGAGTAAGCTCCCTAATACGGAATTATTCTGAACCGATGGGCCTTTCAAAGTCCCTTAAT
CCGTCGTTTATTGGTTTTGATGGGGAAGACCTGGAAGTTTAATCCCCTTTCTATTCTAGCCCTTG
GGCTTATATCCCTGTCTCCCTTCCCTTTCGAGTTGACTTGCCTTCCTTTTGGTCCTAACCCCGCT
CCTTTTCAAATAGTAAACCCTGACGTACTCCCCATAATTCAGCTT


Right flanking sequence: Indices 1458729 -- 1459228
AATAGAGGAAAAAAGGAACTCCAATAAAATCCATTACGTACCTGAACCTGTTTAGTACCATTAGA
AAACAACCAATCTCCAAACGTTTGAGAGCCATCAATGATAATTCCAAAACGTCGGCCAACACACT
CCCATATGTCCCTTGCGAATGGGCATGACCGAAAGATATGCTCAGCCGATTCCACCCCTACAGAG
CATAAACGACACACAGGGTAAGTGACAAGGCCTTTCCTATGGAGTATCCCCATACTATTTAAGCT
ATTCAAAAATAGAAGAAAACAAAAGAATCGAACTCTCTACGGAACAGGGAGTTTCCAAATCCACA
CACATTTACCCTTACATTCATCATACCCTTCATGATTCATCAAAGCTCCATAAGCACTTTTCGAA
GAAAATTGCCCATCTTTATCCCAACCCCAGACACATCTATCACCTTCTAAGGCCGAAACAAAGAA
AGGAGTGGCTCTAATGTCATCCACGACCGTAGGTGGGAGAAGTGC



Found at i:1461588 original size:25 final size:25

Alignment explanation


    Indices: 1461560--1461611  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

    1461550 CCCAGGATCC

                                     
    1461560 TTGAAGTTATTGAATCCAGACGTTA
          1 TTGAAGTTATTGAATCCAGACGTTA

                                     
    1461585 TTGAAGTTATTGAATCCAGACGTTA
          1 TTGAAGTTATTGAATCCAGACGTTA

              
    1461610 TT
          1 TT

    1461612 CTTGCCCAGC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38


Consensus pattern (25 bp):   
TTGAAGTTATTGAATCCAGACGTTA

Left flanking sequence: Indices 1461060 -- 1461559
CCCGATGGACTCATCGTCGGAACCTTTTGTTGAAGGATTCTTTGAAGAGCGCTTGTTTGGGGATG
AAAGCGTCTTGGTTGGATTCGTACCTTACTCAGTTGACTGATTAAGATCGCCAAGACTGACCGGA
ACTAGATTCAAGACTGGATTGAATGAGGTCAAAAGGGCCCTTACTTTCCATGAGAAAAAGGGACT
ATAGGCATATCCACGTTGACCTGCCGAAGGAAATGTAACTAACCACCTGTCTTATTAAAGTAAGA
CTACTACATGATTAAGGTTCTCTCATCATTTGAACATTGGTACGTGATAAGATCTTCTCTTACGA
TAATTATTATGAATCTTATTCCGGATGAATAGAAAAGAAGAACAAAACACTCAAGATTCGATAAA
GGAAAGCTAGTGAAGATGTTATGAATAGAAAGAAGAAGGAACACTCTCAAATAAGGAGAGATGAA
AATAAAAGAGAAATAAACAGTCCTGCCGGGCCAAGCCCAGGATCC


Right flanking sequence: Indices 1461612 -- 1462111
CTTGCCCAGCAAGTGTGGGATAGGGATAAGGCTCGAAAGTTGCGAGTCAAGGGAAAAGCTGTCAG
CTAGACTAAAAAGGAACGAGACTCACAACCAAATCGACTAAAGGCGTTGGCTTGTCTTGCCTCTA
TCTTCCGGGGACTTTGAAGGCTCCTTCAATTGCCCTTGTCTCGCTTAACTCTTCTCGTAGTGCTC
GGTAGACCTACTTTAACTTACTTCTCCGCTTTATCTGTTATTACAAGATCTTAAGATCAGCAACT
CGGCGGATAGGGATTCATCTAGATTCGTTCCCTTTCGTTCCTTCGCTATGGCATTTTCTCGTCTT
AGTCACCATCTCCCCTTATATACAATATTCATTCTCTCAAGTCATACGTATTTAGTTCTAACAAC
GGTGTTCAGCTCTTTCCTTTTTAAAGTACTTCGTCGCAAGGCTTCGCTGCAACTTCTCTGTGCGT
GGGCTAGTCAGCAGGAGCTTCATCCATCCCTCCATTCTACGCATG



Found at i:1470236 original size:22 final size:22

Alignment explanation


    Indices: 1470208--1470253  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

    1470198 AAAGCACCTT

                                  
    1470208 CTCAACTTATGTAATGTGTCTA
          1 CTCAACTTATGTAATGTGTCTA

                                  
    1470230 CTCAACTTATGTAATGTGTCTA
          1 CTCAACTTATGTAATGTGTCTA

              
    1470252 CT
          1 CT

    1470254 GCTTTTTCGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41


Consensus pattern (22 bp):   
CTCAACTTATGTAATGTGTCTA

Left flanking sequence: Indices 1469708 -- 1470207
ATCAAAAGAAGTATAAGAAACTTCAGAAGACCTAAGAATCTAGCTAATTTGATTGGAACTAATCC
GAAGACTTAGATAGTCTGTATGTCTATTTTGTCTTAAACAGAGGGGTTCTTTTCAAGTTAATCAA
TGGTAAGATACCCACGCACAGACGGATCCACTAGAGAATAGGGTGATCGCATTCTGCAACTGTAA
GGGATTACCCCTAGGTCTTGCAGAGCCTCTTGTCCTCGTCAACCAGGAAGTTTCTCCTTCATCGG
GCAATTTCGTGCCAGAGTAGGACTCTTACAAATGAAAGAGCCAGAGTCCGCCTTAGAAGGCCTTC
CCTGCTGTCCATCTGTGTGAGAGGCATTCTTCTATTTCTGGTCTGATTTCTTCTTTTCCTTTATG
ACTGGGATTTGTTGACTCCCTAACCTAATATAGATACCCAGCCCAGACCTGAGAATAGCCAACTT
ATTATTCTTATTTTATTACCATGCTGAGTTAAGAGAAAGCACCTT


Right flanking sequence: Indices 1470254 -- 1470753
GCTTTTTCGACTACTTAATCTGTTGCTGGATGATTGACTGTGGATTGACCAGGGGTATATACCTT
TACTCCTGTCCTTTGCTTCCAAGATGTATAGTTGTTTACGACTGAAGCGTGTCTTTCTCGAGATA
TCTAATTAGAGTCTGTTGTGTCACTTCAAAGATGATTTCCGGGTACGACTTCAATGATTGTATTT
TCTCTGGGCCTGTTCAGGTAGAGATGTTTTGGTCATTCTGGTAATTTTATTCATTGAAACAAGTT
CCAACCACGATGGTTTGGCGTGAGAGGTAGAGCCAAATGCGCCGATTTCCTTCTTTGTCACCATC
TCTTTCAAATGTTCGTTCTTTCGCGTCTTAGACATGGTGGGTTCACCCGTTTGTGTGCCGGTTGG
GTCCTAATAGAATTGGGTGTATCATTAGCTTTTTACAAGGTGACGACGGGATAAGATTTCAAATA
AATAGGAAAACCAGCCGCATGCTCCCTATCTGTCTCAATTGGCCG



Found at i:1471605 original size:22 final size:22

Alignment explanation


    Indices: 1471577--1471620  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1471567 CATACGCCAT

                                  
    1471577 AGCCTCTTCTTATGTCATTTAC
          1 AGCCTCTTCTTATGTCATTTAC

                                  
    1471599 AGCCTCTTCTTATGTCATTTAC
          1 AGCCTCTTCTTATGTCATTTAC

    1471621 CAACTTACTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.18, C:0.27, G:0.09, T:0.45


Consensus pattern (22 bp):   
AGCCTCTTCTTATGTCATTTAC

Left flanking sequence: Indices 1471077 -- 1471576
GGCTCAGCGCTTTCGACCCTTGCTAGCTGCATTTCGCCCTTCCTTTTCGCTCTCAGACGAGGTTT
TTGAACATACCCATTGCTTTTTCCTACTATCTTACTCACTCCTTTTAAGAGTCGGAGCTGATTTA
TAAATTGCCACGTCTGTTGCTAGAATGGCTTGTTAGCAAGTTTTAGCCTATAGAAAAAAGGCTTA
TATAAGAAGAAAATCAGAAAAGCATACCCCGAATGGGACGGGAAGGAAGTACCTATTTGACTTAG
CTGCAGTGACTGACCCTCTTTTATACGCTCTTACTGGATCCGGGCAAGGGAAGAAATTAACCAAC
TCGATAGCTATCGTAAATCCCTATCTTACACCAGACAGAAGACAAGTAACCATAGACCGATGATA
AAGGCTTAAGCTTTATCGAATCCTGAGTTTGAGGGTTCCGAAGTTTCATACTAGTCCTTACTTTC
TTTGTCAACTGACTTGAGAACAGCGAATGAACCCCCATACGCCAT


Right flanking sequence: Indices 1471621 -- 1472120
CAACTTACTCACAACTCTTTGAGCAGAAGTAAAAGAAGTGAATACGCCTCCTGAAAAGGCAAATG
AAAAAGCTTAACCCGTTCTCGAGTTCGAAAAGGATAACTCTTCTAACTCGGAATCCGAGTAAGCC
GTAAGAAGAGTCGAAAGCAAAGATTCAAATTCGAGATTGAGTTGAGAACTTTAACCCGTGAAAAT
AGGCGCTTCTTTAGGATTTCACTCGAATAGGTCGAGAAAGGGAATGAATCTTTACCCAATTACAG
TAGTGGAGTGGAAAGCTCGAAAGTAGAAACCGGAAGGTAAATCCTTAATGCAACTCCCTCTTCTA
ACTCCGAGAGGTGCGAGAGAGGAGGTCCACGGGTTGGTTAGAGATGGTTTTATTCCCTTTTGCTC
AACCGGGTTATGTCGATTCAGCTGAACGATGTTTGCGATCCAGTGAGGAAATGCCAGTCTCGAGT
TTTGTTACAACCTCCTTGTCTTACTGAGCCTTTCGCATGGTTTTC



Found at i:1481199 original size:15 final size:15

Alignment explanation


    Indices: 1481179--1481211  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

    1481169 AGACCTACGC

                       *   
    1481179 GTACATAACAGTCTA
          1 GTACATAACAGCCTA

                           
    1481194 GTACATAACAGCCTA
          1 GTACATAACAGCCTA

               
    1481209 GTA
          1 GTA

    1481212 GACACCTAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.39, C:0.21, G:0.15, T:0.24


Consensus pattern (15 bp):   
GTACATAACAGCCTA

Left flanking sequence: Indices 1480679 -- 1481178
ATTCCATTTTGAGGTGCTGGAAAGGCTGGTCCTAGATCAGTCTGGTCTTACCAATTGAAAAATGC
TAGATCACACTTCTCGAAATAGAGCTCCTTTTACAGTTGACTTGACTTCCTTTTCTTTCATTTTA
TTGTCTATAGTTGAAGCTCAACTACTTAATGGCTCACGACCGCTCCTACTACCTGGCCTACTTCA
TTCAATCTCCAAACTGTTACCAGAAAAAAGGGTGTCCCACCTTAAGGCATCCAAACCTGTACCAT
CAGAACATAGCAGGTTGCTATCCATACATGCTATCAACTCCTACTGGAATAAAGTCTTACTCGAT
GCAGGTTACATAATGTGCAAATGTTAGACTCAGAGATGCCCCAAAAGAGTCTAAGACTATTAGTA
GGCAGTCGTTCCATTCTGGCAAGGAAGTGGATCCAACGGGATGGGGCTTTCAATGCTGGTAGGAC
AGCTTCGAAATCTAATGGAAAAGCCGTCAAGCGGAAGACCTACGC


Right flanking sequence: Indices 1481212 -- 1481711
GACACCTAAAGTCTAATATCAGTACGTGGCCAAGGAAGAAGAAAAACTGAGGCTCGTTAAGACCT
CCACCCACAACAGAATAATCTTATTTATTGAGTGTCCAGTCCGGCGAAGGAGCAGTTTTGACAGC
TAAGGACTCGTAGGCTATAGAATCTCTCTTTCTCATTCTGTGCTGTGTCCTTTCGAATGCAGTTT
CTTATTCGTATAGATGAATTTCTTCTATTAATATGGAAGCATTCACATTCATTCTGCTTCTATTT
AAATGATATTTTAAGAAGACCACTTTCATCTAACGAGCTGAGCATAATAAGCTCCGAGGACGAAG
GTAAAAGGGAAGCGTAGGGAATCGAATAAGTAGCTTCAGGAATTTGTGCGTTAGAAGCAAAGAGT
TGAGGCAGCCACCCGCTTCGGTTTGAAAAATGTTTGCTTGGTTCTGGAAAGAGAGATAGAGAAAC
TTGGACAAGAGTTCAACTAAAGATGCGAACGGGCTGAAGCCTTCT



Found at i:1484997 original size:19 final size:19

Alignment explanation


    Indices: 1484973--1485013  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

    1484963 CCTATGGGGA

                               
    1484973 AATAAAGCATACGTTCTTC
          1 AATAAAGCATACGTTCTTC

                               
    1484992 AATAAAGCATACGTTCTTC
          1 AATAAAGCATACGTTCTTC

               
    1485011 AAT
          1 AAT

    1485014 GATTTCCTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32


Consensus pattern (19 bp):   
AATAAAGCATACGTTCTTC

Left flanking sequence: Indices 1484473 -- 1484972
CCTATTGAAGTTCCCGATGCTTTCTTGCCTTCCTTTCTTTCATAAACAATTGCTTAAGTAAGGAG
ATAGAATTTAAATACCTAGAAGTTAAAGGAAAGGCCTAGCTCGACGCTTCATGCTTAACCCCTAC
TCACTCCACTTCCTTCCTTTATCGATCGTGAGCCCGAAGTCTATATGATCTTAGGCCATTGAACT
TCATCCCCCAGTCTTGTTGACTGCTGTGCTGGTCTTTCAGAGCCTTCCGAAACCTAGGCGATTGC
TTCTTCTTTCACTGCTGATTCCACTGAATGAGCTGACTTTCCTTGAGCTTAGAACATCACGGGAT
GATTAAGGTAACCTGACTGAGTATTCAGCTATGGAAATCTAATTTCATGATTCCTAGAAGTTATC
AGATAAATTCAATTGTAAGAACCTATCCTACTCGATAGCTATAGAAGGTGAGCTAGAACTAGTTC
TCCTAATCCAATACCTCATGCCCCTCAGCTTAATGCCTATGGGGA


Right flanking sequence: Indices 1485014 -- 1485513
GATTTCCTTTGGATCTGTAACTCACCTGACTGAATCCATAAGACCCGAACCGATTTCAGTATTTG
ATTTGGATTCACTAGCTGAAGAGTTAGATAAACCTTTCCCTTTCTTGCAAGTGAATGGAAATATA
ACAAAAGTTACAAGACTGTGCAAACTTTTCCTGAAATAACCCCATTCGCTGCTACGCAGCTCACC
TCTAAAGACCCTTCGCCTTTCGGCTCACCTTCTTTTAACCCTGAGCCTTATCCAAGGCAGCAATA
AGGGATGACTACTTGCTCAACAGGAATTACTGTTATTTATTTTTGATTGGTGTAAAACCGGCATT
TCGAATTTAATATTGTGATTTCGGAAAGATCAGGTAGGCCTTTGTAGTTCATTTTTAGTTGAGAT
TCCTATCAAGAAGAAATATCGTAAGAGAAGATCTTATTCGTTTCTTCTTTCTTCCGTTCTTCATT
TTCTTGATTGAGTAGCTTACGTTAAAGTTCTTTTTCTACGAAAAA



Found at i:1489468 original size:15 final size:15

Alignment explanation


    Indices: 1489448--1489493  Score: 92
    Period size: 15  Copynumber: 3.1  Consensus size: 15

    1489438 ATCCCTGCAG

                           
    1489448 AAACAATTAGTTAGA
          1 AAACAATTAGTTAGA

                           
    1489463 AAACAATTAGTTAGA
          1 AAACAATTAGTTAGA

                           
    1489478 AAACAATTAGTTAGA
          1 AAACAATTAGTTAGA

             
    1489493 A
          1 A

    1489494 TCCAAGTATG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   31  1.00

ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26


Consensus pattern (15 bp):   
AAACAATTAGTTAGA

Left flanking sequence: Indices 1488948 -- 1489447
AAACCAACTCCGCTGACGATTAACTCTTCACTCGATGCATCCCTACCTCTTTTCTCACTTCCTTT
TCCTTGAGCTTAGACTAGACATTTGAAGGAGATTCATATAATACATCAATGGAATTTTAGCGCAA
CTTTTACATTTCAGTAGTCGATTAGTCAACTAGCCCCCTCGAATTACCCAAGGGCGGACTAAACT
GCAAGACCTCCTTCCTGCTTCGGGCGGATACCCCTATGCTCTCATCTATGCTAACGTGGTTCCAG
TACAGTAGTAAAGAAGAACGGTAAGCTTCGAGTCGGAGGGAGAATACGGCGTAGCTCCCCCGAGG
GGCCGGGGTTAAACGTTCCTTTTTCTTCTTTTGCTAGGTGGTGATAAGTTGAGAGCTCTGTGCAG
GCCAAGTAAATGAAGCGTCATGCAGTAAGCAATTACGCCAATACCAGATGAACCAAATAGCAAAC
ATAAAGATGTAGCACCATGGAATTCCAAGAAAGTCATCCCTGCAG


Right flanking sequence: Indices 1489494 -- 1489993
TCCAAGTATGCATATCAAGAGTGAAGAAATCCCCTTGGATTAAGTCTTGGGCGGATAAGATTCCA
AAGTTGCCGCGCCTTAACACAATCCCGAAGCGCATGGAGTGAAGTTTCGGTAGCAGCCGAACAAA
TAAAGCAAGAGGAATGGCTCAATATATGACGATGACAAAGAAAGGCAGCAGTAGGAATAGAGTCA
TGTAGGACTCTACACACAAAGAGTTTAATCTTATTTTTTCCAGGAAGTGTCCAAACCTTGCTCCA
ATTGAATGCAGGTTGCAGGAGGCATTTGGCTTTTATGGAATAATAATTAGGTGGATGTTATGATC
AAAGATCACTTCTTTCAAGCTGTTACCATCTCTGTTAAAGTCAATAATAATGAATGGAATCTCAC
CTTATGTTTAATATTCCTAAGGGTGGTTGTCCTGCTACATTGAAAGACTTTCGACCAATTACCTT
GTTGAATACTTCATTTAAAATTTTGTAAAGGTCTTGGTTAACAGG



Found at i:1498471 original size:14 final size:14

Alignment explanation


    Indices: 1498452--1498482  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

    1498442 CACCTTCCTA

                          
    1498452 TATGTAATATAATG
          1 TATGTAATATAATG

                          
    1498466 TATGTAATATAATG
          1 TATGTAATATAATG

               
    1498480 TAT
          1 TAT

    1498483 TAACAAGGCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45


Consensus pattern (14 bp):   
TATGTAATATAATG

Left flanking sequence: Indices 1497952 -- 1498451
TAGGCAGAGATAAAGCAAAAACAAAAAGAACGAAAGCAAGACTCGAATCCCTCTTGATGCGATGA
GAAAATGGCTAGTATTCAAGGCTAGTCCCAAGAATCACAATAAAGAAAGGGCTTAAACTTAAAAG
GTAACGACAAGAAGGAAGAACGCACATCACGAACCTGCAAGAGTCGCCGATTAAGTCGGTTGACA
AAGAAAGCTGTTTTCGTCATAAACGGCTCATCATCAGCGCGGAAGAGGAAAAGCTGAGGCTAATC
TCTTTTTGCTTCCTGAATCTTCACACGAAGGTGCCGACGTAATGCGTCACGAGTTACCTGCTGAC
TTGGAAAAGACTTCTAAGTTGGTTCGAAAATCCCTTGCTTAAGAGGAATCCTTTCTATCTGGGGC
ACGTATCGGCAGAATAAGTCTTTCATTTTCTCACTAATTGACTCAACTCTGCGGATGACGCGATC
CATATCAGAAAGAGGTGCTGACATTGATTCAAGATCACCTTCCTA


Right flanking sequence: Indices 1498483 -- 1498982
TAACAAGGCACCCAGAGACTCTACCTCGCAATCGAACGATTTTAGTATCTTCAATCGGAATATCG
TATTCTTCTGCTTTCGGCGTATCGTCTTCTTTCTTGAGATAGAGATTTCACAAAGAAAGGCCTTA
ACCTATGGGACTACTTACTATAGAAAGAATGGCTAGAGTTTCTTATCTAACTACAGTTCCTTCCA
ATCAATACATAGCAGTTGAATTCCCAATCAAATCAATAACAACTCCCGAGGAAGAACCTATAGTT
TCAAAGGCTCTTAGAAATCTCGATAGAATTGATTAGATAAGGAACCCCAGAGAACTGCTAGCTAT
CATCCGCTCACTCTTCTGCTTGAACTCCTTCCCTGCCTTCTTGTTATCCTAGTCGATGAGCCCGA
ATGGTTGGCTCAGAAGCAGCTTTCGAACCTGTTATTTTGTTTTGAGGTTTAGGGTTCCTCTGGGG
CTTAATCTCCTACTTCCCTAAAATAAATAGTAGGGTCACGCTTTC



Found at i:1501382 original size:22 final size:22

Alignment explanation


    Indices: 1501354--1501401  Score: 96
    Period size: 22  Copynumber: 2.2  Consensus size: 22

    1501344 ATGAAATGCC

                                  
    1501354 TACTTTCGGAACCTCTTTCTCT
          1 TACTTTCGGAACCTCTTTCTCT

                                  
    1501376 TACTTTCGGAACCTCTTTCTCT
          1 TACTTTCGGAACCTCTTTCTCT

                
    1501398 TACT
          1 TACT

    1501402 ATTAAGCAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46


Consensus pattern (22 bp):   
TACTTTCGGAACCTCTTTCTCT

Left flanking sequence: Indices 1500854 -- 1501353
CGACTAGAGTTTCGATCGAGCATCAGTCTTTCTTTTTATGGTAGGTCCAAAATACCTCTTTCTTT
GGTAGAATGATAGAAAAATTGGGAAAGTTTTCGTTGTCAGTATCTACTGTTGAGACCTTTCGAAA
TACTCTTTCATGTGATTTAATTGAAAAAAAAATTATCACCCATAGCTCTAATACGCCGTTGGGCG
AGAAGGGAAGCACTAAGACAGAGCTTCGCAGTCCAGTTATTCAATAGTGGAATAATTCCATGACA
TTGTTTGAATCTACACTAACAATTTCCCTGTTCCGCTGCATCCCCTCTTGAAAGAAAGAATACCC
CCCCTTTCCTTTCAAGGAAATTGCCTTGCCTGAAAAGCCCTTCTTATCCCCACCTACCTTGCCCA
GATCATAAACGGGAGAGCTTCGGTCACAATTGATCCCTTTCTTTCGTGAATCGAATCGAAGACTT
CTTTGTTCTTAGACCATTGACTTTCGAATTGGCTTATGAAATGCC


Right flanking sequence: Indices 1501402 -- 1501901
ATTAAGCAAAAACAGTTGTAACGAGGTCAACACCCACCACCCCTGTAAAAGAATATCTTCCAACC
TTCCCCAGCACCCTCTGTGGGAAAGAATTCCTTCACTTATTGTCTCTACTAGTCCGGTTGTACTT
TCACTTGTCGACTAAGGGGTAAGAGGTCCTTGATTTTCCTTTTAGTTGGGTATGGAAGCTGCCGA
TCCCGGCACGTTGGTGTACATTCCTCTGGCTCGCATGGCGTGTAAGACTAGTAAGTAATGCTTTA
CGACATGCTTGGGGCCTGTCTTCACATGGTAATTTTATGAATTTTGGTTATTTCTTAGAGGATGT
AATTCATGTGCTTAGAGAATGCCCTGCTGCTAGGAATGTTTGGGAGCAATTAATCCCAAGGAGTG
ATTGGCTTTTAGACAACCTGGATTTGAATAAGAAGGGAAAACAGAGAGTGGCCTTGTTTGCGTCT
GCTCTTTTGAGAATTTGGACTGCCCGGTGCAAATATATTTTAGAA



Found at i:1505836 original size:17 final size:17

Alignment explanation


    Indices: 1505814--1505847  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

    1505804 TGGACCGTGT

                             
    1505814 ATATAAGGTACTTTATA
          1 ATATAAGGTACTTTATA

                             
    1505831 ATATAAGGTACTTTATA
          1 ATATAAGGTACTTTATA

    1505848 CCTGTCTGCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41


Consensus pattern (17 bp):   
ATATAAGGTACTTTATA

Left flanking sequence: Indices 1505314 -- 1505813
AGTATTCCGCTCCCCAACTCAACCAGATCAAATGTCCTCGCAAATACGGGTAAAACGCCAAGAAA
AGAGAACAACCACTCTGAATACACCTTCCCTCTTGCCCTTTACCCCAATCGATCGGGTGCCATAG
CCAATGATCCCATCTCTTATCGTAGGGGTACTTTTTGCTGTGGATGCAACTAAGATATTCTAACT
GTCAACTATCAAATCTTTATTCTTATTCCACGTCTTTCTTTGTCTAGAAGTCAACTTCTTCATTG
ATATGATATCATCTAGCGATTTTTCAATAATAGACACGTCAATAGGGAGCGAGAGTTGATTTCCC
TTAAGTGAATCGTTCAATATCTTAATATTAATAAAAGAGTTTATAATGAATATGGGTTTATTCTC
AAAATCTTTACCTACCTCTATCACTTTAGTAAATAGAAGAGCTTGGAGATAGCACTCAGAAATAT
GACGAATATAATATGGTGTAGTAATGAAGTTATCGTGGACCGTGT


Right flanking sequence: Indices 1505848 -- 1506347
CCTGTCTGCTGCCTCTATAACCAAGATAGCATAACAAGCATCCTTTCTTTTGATGTATAAAGTTA
GCAAACAAAGGTAGATGATCTAGACCTCCGTGGATACGATTGATCTGTAGCAATACTTAGCGTGA
GCTTTCGCGACTTTTTCCCTCCACTATCCCTACTTTTATTAGGATCATATGCTACTATTTCGCAT
TTTTCATGCTTAACGTATTCTTTCTTTTTCATGCTTAACGTATTCTTTCACAGTATCTAAAAAAA
GACTACTCTAAGAGGACGATCAATACTATAGCAGAACCAAGCAATAGTCTTTATTAATTGAATTA
GGTTTTTTATGCCAGACCAATTCTTCAAAAAGACATCAACTATGACGGTTGCGATTTTTATACTC
TCTATTCCTGAAAAGGATTTTTTTAATCCTCAATTATATCTCCACTCATGCAATAAATAGGGTGT
CTTTCCATAAACTAGAGGCAGGCATAAATAGCTTTTTAATCAATT



Found at i:1506070 original size:25 final size:25

Alignment explanation


    Indices: 1506042--1506091  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1506032 CTATTTCGCA

                                     
    1506042 TTTTTCATGCTTAACGTATTCTTTC
          1 TTTTTCATGCTTAACGTATTCTTTC

                                     
    1506067 TTTTTCATGCTTAACGTATTCTTTC
          1 TTTTTCATGCTTAACGTATTCTTTC

    1506092 ACAGTATCTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.16, C:0.20, G:0.08, T:0.56


Consensus pattern (25 bp):   
TTTTTCATGCTTAACGTATTCTTTC

Left flanking sequence: Indices 1505542 -- 1506041
CTTTCTTTGTCTAGAAGTCAACTTCTTCATTGATATGATATCATCTAGCGATTTTTCAATAATAG
ACACGTCAATAGGGAGCGAGAGTTGATTTCCCTTAAGTGAATCGTTCAATATCTTAATATTAATA
AAAGAGTTTATAATGAATATGGGTTTATTCTCAAAATCTTTACCTACCTCTATCACTTTAGTAAA
TAGAAGAGCTTGGAGATAGCACTCAGAAATATGACGAATATAATATGGTGTAGTAATGAAGTTAT
CGTGGACCGTGTATATAAGGTACTTTATAATATAAGGTACTTTATACCTGTCTGCTGCCTCTATA
ACCAAGATAGCATAACAAGCATCCTTTCTTTTGATGTATAAAGTTAGCAAACAAAGGTAGATGAT
CTAGACCTCCGTGGATACGATTGATCTGTAGCAATACTTAGCGTGAGCTTTCGCGACTTTTTCCC
TCCACTATCCCTACTTTTATTAGGATCATATGCTACTATTTCGCA


Right flanking sequence: Indices 1506092 -- 1506591
ACAGTATCTAAAAAAAGACTACTCTAAGAGGACGATCAATACTATAGCAGAACCAAGCAATAGTC
TTTATTAATTGAATTAGGTTTTTTATGCCAGACCAATTCTTCAAAAAGACATCAACTATGACGGT
TGCGATTTTTATACTCTCTATTCCTGAAAAGGATTTTTTTAATCCTCAATTATATCTCCACTCAT
GCAATAAATAGGGTGTCTTTCCATAAACTAGAGGCAGGCATAAATAGCTTTTTAATCAATTTGCG
ATCGAGGCCTGACAAGATCAGTTTAAACTTCTCAGGCGAGTCCTTGAAATACTTGTGAATGCCCA
CATGCTTGGAAGATATGGGAAGAGGTCGTCTCTAGGAAGGTTTTACATTCTTTCCTTGACGTCAA
CCTGAGTAAAAGTCCTATTCAAATACCCGAAAACTGGAATCGAAGAAACCTTTAGCGCATAGGAA
GGGGCTACCCAGTACCTGTAGCGAATAGGCTCAAAGGCGGAGATA



Found at i:1506775 original size:27 final size:27

Alignment explanation


    Indices: 1506737--1506791  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

    1506727 AGAGTATCCG

                                       
    1506737 GCGAATCAGATCCCTAGAATACTCCTA
          1 GCGAATCAGATCCCTAGAATACTCCTA

                                       
    1506764 GCGAATCAGATCCCTAGAATACTCCTA
          1 GCGAATCAGATCCCTAGAATACTCCTA

             
    1506791 G
          1 G

    1506792 AGGTCTCAGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22


Consensus pattern (27 bp):   
GCGAATCAGATCCCTAGAATACTCCTA

Left flanking sequence: Indices 1506237 -- 1506736
CTCTATTCCTGAAAAGGATTTTTTTAATCCTCAATTATATCTCCACTCATGCAATAAATAGGGTG
TCTTTCCATAAACTAGAGGCAGGCATAAATAGCTTTTTAATCAATTTGCGATCGAGGCCTGACAA
GATCAGTTTAAACTTCTCAGGCGAGTCCTTGAAATACTTGTGAATGCCCACATGCTTGGAAGATA
TGGGAAGAGGTCGTCTCTAGGAAGGTTTTACATTCTTTCCTTGACGTCAACCTGAGTAAAAGTCC
TATTCAAATACCCGAAAACTGGAATCGAAGAAACCTTTAGCGCATAGGAAGGGGCTACCCAGTAC
CTGTAGCGAATAGGCTCAAAGGCGGAGATAGAAGATATGGCTTTATCTTCGGCATATCCCTAAGT
CCTAGCAGAAAGGGGATAGCTGACTCCATCTGAAGGTTCGGCATACACGATAGAGAAAAAGGAGA
TAGCAGGATTGACAGGACCAAGCAAACTCGGAATGAGAGTATCCG


Right flanking sequence: Indices 1506792 -- 1507291
AGGTCTCAGGTAATAGCATAAAGTAGAACCATACTTCCTTGCCCCAAGAGTCGAGCCAAAGCTTA
AAGACTTGTTCATCTCTGAATCTTCATTTCCTGCTCGAGTTTCCAGTTCAGAAGCAAATATTGAT
GCAGATCGAGATTCCCTATCACATTTGGTGTATTCTTCTAACGCTACTTCGCTTTCAAATAATAG
AAGAGAGAACATCATGTTGACGGCAGACTTTCAATCGCTTTCACTCGGGAAAAGAGTCTAGCGCC
CGGAGGGAGCAGCTATACCAGGAGAGAGATAGACGATGAGCCGCCAATCGCCCTTACTCGCCCTT
ACTAGAACTAGATACATTCTTAAAAGAAAGGGCTTTGAACGTATGACAAGACGAAAGAAAAGTTA
GTTGCTTGAGAAAAGGAAGACTAGTCTTCCTTATCAGATGTCACTGGGCCATTTACCCTTTGTTA
ACCCAGCTTCTAAAGCGACTATCTATCAATGTATGGGGTATTTGT



Found at i:1507652 original size:29 final size:29

Alignment explanation


    Indices: 1507620--1507677  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

    1507610 GACTCTGGCG

                                         
    1507620 ATTTAGTGTTAACTTTTCCTAAGCTTAAT
          1 ATTTAGTGTTAACTTTTCCTAAGCTTAAT

                                         
    1507649 ATTTAGTGTTAACTTTTCCTAAGCTTAAT
          1 ATTTAGTGTTAACTTTTCCTAAGCTTAAT

    1507678 GCCGAATGGT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48


Consensus pattern (29 bp):   
ATTTAGTGTTAACTTTTCCTAAGCTTAAT

Left flanking sequence: Indices 1507120 -- 1507619
AGAACTAGATACATTCTTAAAAGAAAGGGCTTTGAACGTATGACAAGACGAAAGAAAAGTTAGTT
GCTTGAGAAAAGGAAGACTAGTCTTCCTTATCAGATGTCACTGGGCCATTTACCCTTTGTTAACC
CAGCTTCTAAAGCGACTATCTATCAATGTATGGGGTATTTGTTGAGAAAGCAAACTCAAAAGCTT
ACATTTCATCTGCAGAGTTGGAAAAACATATATCCAATCGCTCCTTCCTCAGCATTCGAGTAAGC
CGGAAGAGCTCTCTCCTTTAGAAAAAGATCGAGCGTTAGAAAGACTAGAATCTCCCGAAAAGCCC
TTTCCCACTTATGTCTCTTCACTTGCAAGTATTCCCTTTGAATCGGTTGAACTCCTCGGTAAAGA
CTAATTAGTTGTTTGAGAAAAGTGAATAAATAGAAGAGAGAGTTCCCCTATGAACAACTTCCACT
CCACATGACCGGCTCCAGCAAGTAATAGGTTTTTGGACTCTGGCG


Right flanking sequence: Indices 1507678 -- 1508177
GCCGAATGGTCCTCAAAGTATATCGGTGAAAGAACCTAACTTCCACCAGACCTTTAATCTGGTTT
TTCTCTTGAGTAAGAAGCGAAGGGGATGTGCTTTCATATTGATGTGCATTTCTCAACATAGAAGA
AATGAATAGAGGAAAAGGTAATACGATAAGTGAGTTCAGAGTTGGTGGCTGAGCTGTCAATCGAA
GAGAATACGCATTTGTCTTTCAGCTTGTCAGTCTAAGGGAATACCATTTATTAGCCTAAGTGAAT
AGGGATAGAAAGTCAAGCAGATTGATTAAAGGTAAAAGACTTCCTGCTTTCCCTACTTTAGACAA
TTGGATTAGACAGAAGGAGAAGAAAGCCCAAAGCAAGTAACTACAAATCTCTCATCAACTTGAGA
ATCTGTTGAAGGTCTTGCAGAACCTGCTTACTTTACTGTTTTCGATTCGGAGATGAAGTTCTCAA
CAATGGCTTAAGCATTGGAATTTTCTTTCTTTCCTCAATGCCTCT



Found at i:1508541 original size:20 final size:20

Alignment explanation


    Indices: 1508516--1508556  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

    1508506 TCTAATCTTT

                                
    1508516 TGAAGAGGTAGAAGTACCAC
          1 TGAAGAGGTAGAAGTACCAC

                                
    1508536 TGAAGAGGTAGAAGTACCAC
          1 TGAAGAGGTAGAAGTACCAC

             
    1508556 T
          1 T

    1508557 TGGCGAAGGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.39, C:0.15, G:0.29, T:0.17


Consensus pattern (20 bp):   
TGAAGAGGTAGAAGTACCAC

Left flanking sequence: Indices 1508016 -- 1508515
AAGGAGAAGAAAGCCCAAAGCAAGTAACTACAAATCTCTCATCAACTTGAGAATCTGTTGAAGGT
CTTGCAGAACCTGCTTACTTTACTGTTTTCGATTCGGAGATGAAGTTCTCAACAATGGCTTAAGC
ATTGGAATTTTCTTTCTTTCCTCAATGCCTCTCGCCGTATGAAAGCGAGACTCTAATCGCTTCCT
CAATCAGGGTAAGGTAATTTGAGAAGCGGATGAAAGCATTCCGAAGTAGCCCACTGGTGAAAGTG
ATGTTAGTAGAAGAGGTGGCGAGACCCTCTTTACGCCAGTTCCATTGGTCATAGGCAGAGGCAGG
TATAGAAGAAGCGAGGCAGGATGCTTAGAAAGCACTTGTTGAAAGATAGAATAAGCCCCATGCTT
GTGTTCAAAGTCGAGAAGGCCCTTTTCTTTTATGATCGAGATTGGCCAGCTTAGCTGTATAATAT
AATTAAGATGATTTTAAAAAGTCTGCAGCTGCATTTCTAATCTTT


Right flanking sequence: Indices 1508557 -- 1509056
TGGCGAAGGGTATTAAGTCATGCCCGTCCAAATAGCGAAGTTGGTTCAGCGAATAGCTCAGCGAA
TCCATCTGGACTATATAGCATCGAAATCTCATTAAATCAGTGAGTCAGTCCTCTTCTATTTGATT
CAATGTTATCTATCAAAGGTTTCACTTAATGAAAGAAAGAACTGATTGATTCACATTCAAAGTTA
GAAAGTCTTCGAAAGCTGCATCAACCTTCTCATCTTGAGAGCTAGAAGCGGCGGGTTAAGGTGCG
AAAGCATTTTCCTTTTGGTCCGGTACTTGCTAACGAGCATAGGTTTATTAGTTTACCCAGACCCA
TGAATGACTCATTCGCTCGGGCTTAATAGATTCTCAAACCCCAATAGATTCTCAAACCCCATAGG
TTCTGATTCTAACTCACGGGCTAGAAAAATAGGTTGCTATTACTTCTCAAGTTGAGGGAAGAGCC
ACAACATCAGCATATAGTCATAAGGCATGAGCTCGGGATTTCTTA



Found at i:1508950 original size:17 final size:18

Alignment explanation


    Indices: 1508906--1508942  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

    1508896 GCTCGGGCTT

                              
    1508906 AATAGATTCTCAAACCCC
          1 AATAGATTCTCAAACCCC

                              
    1508924 AATAGATTCTCAAACCCC
          1 AATAGATTCTCAAACCCC

             
    1508942 A
          1 A

    1508943 TAGGTTCTGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.41, C:0.32, G:0.05, T:0.22


Consensus pattern (18 bp):   
AATAGATTCTCAAACCCC

Left flanking sequence: Indices 1508406 -- 1508905
GTGTTCAAAGTCGAGAAGGCCCTTTTCTTTTATGATCGAGATTGGCCAGCTTAGCTGTATAATAT
AATTAAGATGATTTTAAAAAGTCTGCAGCTGCATTTCTAATCTTTTGAAGAGGTAGAAGTACCAC
TGAAGAGGTAGAAGTACCACTTGGCGAAGGGTATTAAGTCATGCCCGTCCAAATAGCGAAGTTGG
TTCAGCGAATAGCTCAGCGAATCCATCTGGACTATATAGCATCGAAATCTCATTAAATCAGTGAG
TCAGTCCTCTTCTATTTGATTCAATGTTATCTATCAAAGGTTTCACTTAATGAAAGAAAGAACTG
ATTGATTCACATTCAAAGTTAGAAAGTCTTCGAAAGCTGCATCAACCTTCTCATCTTGAGAGCTA
GAAGCGGCGGGTTAAGGTGCGAAAGCATTTTCCTTTTGGTCCGGTACTTGCTAACGAGCATAGGT
TTATTAGTTTACCCAGACCCATGAATGACTCATTCGCTCGGGCTT


Right flanking sequence: Indices 1508943 -- 1509442
TAGGTTCTGATTCTAACTCACGGGCTAGAAAAATAGGTTGCTATTACTTCTCAAGTTGAGGGAAG
AGCCACAACATCAGCATATAGTCATAAGGCATGAGCTCGGGATTTCTTATAAATCCATCTCTGAA
CTCATTTTGAAAGTCTTACTCATCGGTTGAACCATAAATGGAATCCGTTGTTTATTCTTTCTGCC
CTAGAGACGGATCTAGTCCAGCCTAAGATGAAAGCCCATCCACAAACAACCGGACACGCTCTGAC
ACGGCTACTTACGCTAAAGTAGTTTAATCGAATCCTGAGTTTGAGGGTTCCGAAGTTTCATACTA
GTCCTTACCTTTCGTGAAAACCAAGTAGCTCGCTCAAGGTTGCTTGAAGTCTACTCGCTCATTGT
TGCTTGAAGTCTACTCAATCATTGTTGCTTGAAGTCTAGGTGCCTATAATTATAATCCTCGAAGG
GTACGAGAGGTCGAAAGAGTTAATCGTCAGCGGAGAAGGTTCTTT



Found at i:1509324 original size:25 final size:25

Alignment explanation


    Indices: 1509296--1509370  Score: 114
    Period size: 25  Copynumber: 3.0  Consensus size: 25

    1509286 AACCAAGTAG

                    **               
    1509296 CTCGCTCAAGGTTGCTTGAAGTCTA
          1 CTCGCTCATTGTTGCTTGAAGTCTA

                                     
    1509321 CTCGCTCATTGTTGCTTGAAGTCTA
          1 CTCGCTCATTGTTGCTTGAAGTCTA

               **                    
    1509346 CTCAATCATTGTTGCTTGAAGTCTA
          1 CTCGCTCATTGTTGCTTGAAGTCTA

    1509371 GGTGCCTATA


Statistics
Matches: 46,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   46  1.00

ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37


Consensus pattern (25 bp):   
CTCGCTCATTGTTGCTTGAAGTCTA

Left flanking sequence: Indices 1508796 -- 1509295
GAAGCGGCGGGTTAAGGTGCGAAAGCATTTTCCTTTTGGTCCGGTACTTGCTAACGAGCATAGGT
TTATTAGTTTACCCAGACCCATGAATGACTCATTCGCTCGGGCTTAATAGATTCTCAAACCCCAA
TAGATTCTCAAACCCCATAGGTTCTGATTCTAACTCACGGGCTAGAAAAATAGGTTGCTATTACT
TCTCAAGTTGAGGGAAGAGCCACAACATCAGCATATAGTCATAAGGCATGAGCTCGGGATTTCTT
ATAAATCCATCTCTGAACTCATTTTGAAAGTCTTACTCATCGGTTGAACCATAAATGGAATCCGT
TGTTTATTCTTTCTGCCCTAGAGACGGATCTAGTCCAGCCTAAGATGAAAGCCCATCCACAAACA
ACCGGACACGCTCTGACACGGCTACTTACGCTAAAGTAGTTTAATCGAATCCTGAGTTTGAGGGT
TCCGAAGTTTCATACTAGTCCTTACCTTTCGTGAAAACCAAGTAG


Right flanking sequence: Indices 1509371 -- 1509870
GGTGCCTATAATTATAATCCTCGAAGGGTACGAGAGGTCGAAAGAGTTAATCGTCAGCGGAGAAG
GTTCTTTCTTGGGCAAGAAGGGGGTTGCTTCCCTATCGCAATAGCCCACTCACTGTTTAGCTCGA
TTCACTGATTTGCTGGCTTTAGGGTTGCGGTTTAGAGTTAGCTTTTTTAAAAGCAACCATAGGGG
AAAACGTTAAGTTCACGATTTGGAAATTAACTAGGCTAATGCCCCATTCTCGAGCACTCTTTTAC
TTACTAACTGCGCTTTCGCCCCACGTCAGAAACAATAAACAAAGAAGAAGCGAGGCGTCAGCTAG
CCTTCAGTAAAGGGTCAGCTAAGGGCCTTGTAGCTAAGCAAGCCTAGTAGTAGGGACTGGTATTA
TCCACGGACTCTATTATCGGTGGACGCAGAACTGCTTTCTTCTCCTCGTTACATTTATCGTATGT
ATAGTATCAGCGGTTGATGTAAGAAAAGCTGTTTTCGAGACTGAG



Found at i:1513772 original size:18 final size:18

Alignment explanation


    Indices: 1513749--1513784  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

    1513739 ATCAACCTAA

                              
    1513749 AAGATAATCTCCTGAATC
          1 AAGATAATCTCCTGAATC

                              
    1513767 AAGATAATCTCCTGAATC
          1 AAGATAATCTCCTGAATC

    1513785 CCAATGCTAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28


Consensus pattern (18 bp):   
AAGATAATCTCCTGAATC

Left flanking sequence: Indices 1513249 -- 1513748
ATCAATACTATTACGGAAACTAGCTGGTAACTTTGATGTCAGCATCGTATAAGTCAATATAGAAG
AAGTAAGCGAACTTACCAATCTTGCACGACCCGACAAATCAAGGGCTTTCGACTTCCACCCACTT
AGTCGAGTACTTACTTTAGAAACTAGTTCATGGTACTTCGCCCCTCTCACCTTACCATGCACTAA
CGGCACCCCTAGATACTTACCAAGATCATTCGTTAATACCCAAAATGCTGCTTACTACCCCGTGT
ATTACCACTAGAAGCCTTGGGTGAAGATAGGAGATTTCTATAGACTGACTTTAGCCCCGGACACG
AAAGCAGAAGCAGACGATTCGCCGACATGAAGAAAGAGCTCACCTTCTCAATCGCAGACTTTTTA
AAATCATCTTAATTATATTATACAGCTCAGACACCAAAGCTGCACAAGGATGTCCCCTCAAACTA
CCAGCCAACTTAAGAAAGGTCATTACTAACAAAGCATCAACCTAA


Right flanking sequence: Indices 1513785 -- 1514284
CCAATGCTACTAGCTAGCAAGAGTCCCTCCCTCACACCCCATAGCTCCGCCATGATACTGCAGGT
ACTAAAAATATTCAAGAGGAAGCCCTTAACCCTTAAACCTCTATTATACCGTAGCAGTCCACCAG
CAGCCGCAGCTGACGAGGAACCCTTCACAGCACCATCAGTATTCAAGAGCAAGACACCTTCCGGG
GTAGCGATCCATCGAATCCACCTAGGCTCCTTAGCATAGAAAGAAAGACAGAACCGCAACGGATA
CCATCGATTAACGGCTGCTTTCTAATCAAATTAGAGCGCAACCATACCTCAAATGGACAGTGAAA
AAGATCACGTGGTTTGACAAGCCTACCCAATTTCCTACAAGACAGCAAAGCATACGGGGATCGCC
TGAGAATATGCTCCACCGACTCCAAATGATCATGACAGGCAGTACAGCTTGGGTCCGAAGTCATA
CCTTTTCTTCTACGAATCTCGTTCGTATTCAATTTGTTTTGGCAC



Found at i:1517429 original size:21 final size:21

Alignment explanation


    Indices: 1517405--1517465  Score: 113
    Period size: 21  Copynumber: 2.9  Consensus size: 21

    1517395 TTTTGGTTGG

                                 
    1517405 TTTCGATCTGCTTCTTCACGT
          1 TTTCGATCTGCTTCTTCACGT

                *                
    1517426 TTTCAATCTGCTTCTTCACGT
          1 TTTCGATCTGCTTCTTCACGT

                               
    1517447 TTTCGATCTGCTTCTTCAC
          1 TTTCGATCTGCTTCTTCAC

    1517466 TTAGCGCGCT


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   38  1.00

ACGTcount: A:0.11, C:0.30, G:0.11, T:0.48


Consensus pattern (21 bp):   
TTTCGATCTGCTTCTTCACGT

Left flanking sequence: Indices 1516905 -- 1517404
GCCGAAGGGGGGCATAAAAGGTCTCCTTCTGGGATGAATCCTTCTTCCTTTTGCTATTGATTTAA
TTTTGTCAAACCTTCCCCCTCTTCTTCAATTGCGAAAACTGCTGATTCGAGAACAATTACATTAC
CTTGTCACAGATACCAAACTTACAGAACGCATCGCTTTCACTACGGTTTCAGTGAAAAGAAAGGG
CTTTAGCAACGAAAGTTATTTTAAAAAAGGGTTCCGCTTGACTTTCAAGTCAGTTCCTGGGATTG
ATCAATCAGTAGTGGAATCGGGGGTTGCCTCATCGATCGAGTTCCCTGTCTTCTCTCCTCTATCT
CAACTGATCGATCGCTTCGTCTTTCAATTATGATTTGTTTGGTACACGAGTGGAAGATCAAATAC
GAGAATGGGACTAATGGAGCTAATCTCGCTCTTTCATCAAAGCCCAGACATTTTGATTATTTATC
TCGTGAAAGGACTCATGGAAGTCTTTCTGCTACCTTTTTGGTTGG


Right flanking sequence: Indices 1517466 -- 1517965
TTAGCGCGCTAGAAAGAGAGAAAAAATGGTAGTAAACCCTTTCCGGATCACTTGAACAAGAAACT
CTATCCCAATAGTTCTTCCTTACCCACCGACACATCGAAATAGCTTAAGAGTAAGGTATCAAGAT
GATGAAGTGAGTTAGTCGCACTGCAACTGGATCTAGCTATTCTTACAAAGAAGTAGTAGTTCCTA
AGAAGGGTACCTCGGATCCGAAAGGGGAAGTGGAGGATCTTTAGGGAGATGAGCGGGTTGGTGTT
CCGACATCCCGAATCGAGGTGTAAAAAGCGGTCTTCCTCGCTTGCTCCAATGCTTGGCTTGGTGA
ATCAGTCAATGGCAACTTGCTAGCGATCTCAGAAGCACAAGGAAAGAGAGGAAAGAAGGCCCGCC
AGAAAGAGAGGGGGTATCCAACCCCGGAACGATGTATGAAAGAGACTGATGAAAGCTATCGAAGT
GGACAAGAGAGTGGTGCTGCTTCTTATAACAAAGCCCTTGCTGCT



Found at i:1522535 original size:25 final size:25

Alignment explanation


    Indices: 1522501--1522550  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1522491 TCAAACAGCC

                              *      
    1522501 ATTGTCTCCCTTCGGTCGTAGTTCT
          1 ATTGTCTCCCTTCGGTCGGAGTTCT

                                     
    1522526 ATTGTCTCCCTTCGGTCGGAGTTCT
          1 ATTGTCTCCCTTCGGTCGGAGTTCT

    1522551 TAAGACTATA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.08, C:0.28, G:0.22, T:0.42


Consensus pattern (25 bp):   
ATTGTCTCCCTTCGGTCGGAGTTCT

Left flanking sequence: Indices 1522001 -- 1522500
AGTCCTTTAGCTATGGGGGTTAGGTACTCCTACCTCCGGGTTAGGGTAAGAGTCAGCTATCTGAA
AGTCAATTTCCGGTTAGAAATCTCATTCGAAATCATCAACTTCGGAATATAAGGAGTTGAAAAGA
AACCCGGGATTAGGCTACTCAACTCTGGCTTAAGCATTTTCATTTGAACTCTCAGGTTCCGTAGA
CAATCCTATTTTCTTTTCGGGTAGAAATCAGGATCGGATCCCAATAGTCTGCTCGTTAAAGAGAA
AGTCTTGCAGAGCCACATATTTTAGAATGACCTGGACAGCTTAGCGATGCAGGGAATAGAGACTC
GTTATTAACTCGAACAACCTACCGGGTATCTTAGTCAGGCGTCTTTAGGTACTGCAAGATGACGA
TGACACCCTTGGACTTCCAGGTGATCACTTCATCTTTAGAAGCGGAAACTAAGGACAGTAAACTG
ATCTTTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCC


Right flanking sequence: Indices 1522551 -- 1523050
TAAGACTATAAATTGATTATCAAATCAGACACAATTAAAATCAGCTTTAAGTCAAGAGCAAAACC
TATCGGTAGCAGCACTTAGGTCCTTGGATCAGTTGGTCCAGCGCGGGCTCTGATCGAAGACAATG
GCCCTTGTAGTCGACTTCTATTAACTTCTCGAAAAGAGTCCTTTCTCCCAAGTCGTGTTGAATCA
GAGGCTCTAACAAGACCTCTCATCTGCTTGAGTTGAGTAACCGAAGGGGAATAAACCAAATCTCC
TCATTACCAAGAAATAAATAGGAAGGGAAGCTCTTTCAAGCAGTTCGCCTATGGGAGCACCTCTA
GGAAAGTAAGCAAAAGGACATAAAACAGAAAGCATGTAAGCAAAATCCAATTCTTTAGCACGAGA
AAGAAGAGGACCAACTGATACGGTATTCTTGTGCAGCTAGCCAGTCTTTTCCCATTACCTTTTGC
CAGAACTTGAGCCAGAAAGCAAATTAGCTACGAACGAGCTAATCC



Found at i:1526033 original size:14 final size:14

Alignment explanation


    Indices: 1526014--1526055  Score: 84
    Period size: 14  Copynumber: 3.0  Consensus size: 14

    1526004 AAGAGAGAAA

                          
    1526014 AAAGGGATACATCC
          1 AAAGGGATACATCC

                          
    1526028 AAAGGGATACATCC
          1 AAAGGGATACATCC

                          
    1526042 AAAGGGATACATCC
          1 AAAGGGATACATCC

    1526056 TTAGATAGAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14


Consensus pattern (14 bp):   
AAAGGGATACATCC

Left flanking sequence: Indices 1525514 -- 1526013
CAGTGATTCCACTTTCAGAGTAGGATTCTAGATGTTTCATTATATGCAATTCGGGAAATCCTCAC
TTTACGATGTAGCTTTCACCTCTCTTTCGTCCCCTTCGCCTAGCGGCTCATCTACTTCGTCCCCA
GATAACCCCCTAATCGCGGTAAAAGGTTAAACGTATCAGCTAGTTCGACTAGAAGTTCAGTGCTT
CTTAAACCCCTTAGAATAATAGTAGCAGGATCGAGAGAGTTAGTTGCTCAAGTAATAGTGATTAT
TCGTACTCCTCTCCTTCTGGTATAGTCTATTGAGATAGAGGTACTTCCTATGAGCGTCGAGCGAA
TTCGCCTGCTAGCCTTTCTACTGACCTTCCGTTCTAGTCTGGTCTGCGAATAGGCACTTTTTTTC
TGTTTAGCACGAACGGGAATACCATAAAGGTCCACCCTTAGAAACAATAGAGTTGCTAGAAAGGA
AGAATCCAACCCTACTGGTAGAGGACTTGCTTCAAAAGAGAGAAA


Right flanking sequence: Indices 1526056 -- 1526555
TTAGATAGACGGGTGCGAAAAAAGGGTAGCTGATAAGATTAGTTACCCATTAAGCATCAATAAAA
AGTCAGCTAAAAAGACGGGTAAACGAAAAGTAATCAATTTGGAATTTCCACTCTACCGCTCTATG
CTTCCAGCCCCCCTTCGGATCCCCAGTCCGGTAGATAGCAAGCATGATTGACAGGACCAAGAGAA
GGAGGAGATTATCGAGCGAAGTGATCTTTCGTACCGCGTAGCTTATAACATCCCGAATTCATCTT
CCCCTCCATCTTCATCTGCACCGTAAAAGGAAGCAGGACAAGTTAGAAAAACCAAAAAGGAAAAG
CCCGAAGCAAAGAACCGTAAGAGAAAGATAATCCGCCTTTGAGTTCGAGCTAGAGGTAATTGGTA
CTGCTCCTAGGTCTTGAAGAGCCTAAGAGTAAGTCGCTGAGTCCGACGGGGGAGTTTTCTTTGAT
GGCTCTACCTATTCTATTTCCCATGGGCTAAGCATACATAGTTTG



Found at i:1532127 original size:19 final size:19

Alignment explanation


    Indices: 1532103--1532143  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

    1532093 CAGCGGGCGT

                               
    1532103 AAGACTAGCTCTGTCTTGA
          1 AAGACTAGCTCTGTCTTGA

                               
    1532122 AAGACTAGCTCTGTCTTGA
          1 AAGACTAGCTCTGTCTTGA

               
    1532141 AAG
          1 AAG

    1532144 CGGGAATCGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Consensus pattern (19 bp):   
AAGACTAGCTCTGTCTTGA

Left flanking sequence: Indices 1531603 -- 1532102
AAGAAACTCAAGGAAAAGTCAATGGCCCGGGAGCCTCTTTTTCTAACGGAATTGGAAAGCTGGAA
GACAGTTCGACTGATATACCTTAAAGAAAGAGGATTCACTCGAGCTGATGCCCTTACCGAAAGAC
AACTTTCATACATTGGGGTTTAGATCAGACTACTCTAATTACGGAAATAGTAGTCTGTTCAATAG
AACGTAGTATTTCAATCAATAGATTCCTTTGAAGGTGCAATCCCTATTTATACACTCATACATTC
AGTAATATCAGCTCCGACTCACAGTGATCCGAGTAAGACTTGTTGCTAACTCCCTACGTTGCAGC
TAGCCCGCTTCCCATCTCTTTTGCTTTCCGAGGAGGCCCGCTCAGGAATAGATTGAATGGCAGTC
TTGAAATAATAGGTCTTATAGAAGAAGCAAGCATTGAACCCTCGTACGGTTAAGGTTCGAGTTCA
CCAGAGATTCTTACTGAGACTTCTATATACACTGTCAGCGGGCGT


Right flanking sequence: Indices 1532144 -- 1532643
CGGGAATCGGCATGGCATTTTCTTATTATTAGGTAGTAGGTGCCTCCGCTTGTAAAGAACATTGG
AAGTGCTCCTATTATTTACCCAATAGGAGAGAGGGGCTTTGCTCGGAACCAACCACCTCTTATTA
TATAAGTAGAGAGAAAAGGGGAGTCAAGAAAGTAGAAAACAGAGGGGAGTCATTATTAATGGATC
CTTAGAGACATTTCGGTTCAATCGCTACTTCCCCGTCTTCGCTCGCTGACTTGAGTCCTAACCAC
TCTCACTTTCTGACAGAAGAACCTATAGTAAAAGGCTTAGCAGCACGGGAAGCTTTTATACGCTC
GTGCGCTATTTGCCTAAAAGAAAGAAGAGTACGAGTTTCTTAGATAACTACAGACAGTCCCAATC
AATCAATACCTATCGCACATGTTCTAGGGCGAAGGAAGGGGCTTTCATCTTACCTCAATGTTGAA
GATTCATTCGGAGTCTGTGTCGCATATTTTGAAGTGAATCTGGAA



Found at i:1535130 original size:32 final size:32

Alignment explanation


    Indices: 1535089--1535152  Score: 112
    Period size: 32  Copynumber: 2.0  Consensus size: 32

    1535079 ATTCAGGCAA

                                             
    1535089 CAAGCAAAACCACAT-CGATAGATATGTCTTTC
          1 CAAGCAAAACCACATAC-ATAGATATGTCTTTC

                                            
    1535121 CAAGCAAAACCACATACATAGATATGTCTTTC
          1 CAAGCAAAACCACATACATAGATATGTCTTTC

    1535153 TTTGATGGTT


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  32   30  0.97
  33    1  0.03

ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25


Consensus pattern (32 bp):   
CAAGCAAAACCACATACATAGATATGTCTTTC

Left flanking sequence: Indices 1534589 -- 1535088
CCTTAACCTAGGAAAGTGACTTCGCTAGGCTAGCCTTGGCTTGGGGCTTCAAAAAAAGTTCTTCC
TATGCAACGGACCTCACGTGGCTTTTGTCCCTACCCTCCTCTTTATTGTTCTGATGGGGCTTATG
AACCCTATTGCTTGAGGAAATTCTCAAATTACTGAAAAAATTAGATAGCCAATCTGTGGTTTTGT
CATACAATAAGATCCAATTTGTTTGGACTCGTTAGGTTTGGCCCATTAACTTGAGTGAGGCCGAA
CGTGTACACCTTTTCTTTGTTATGAAGATGTGATCTTATCCACCGATGGGTCTTGTTCTAAGCCC
ACTATCCTAATAGGGTCCCATCTTGTGTCGGGTTAAGGCTCCACACCTCATGTTGGGTTAGTTGA
ACCCAATTTCTTCTTGTATTTTAGGGCTTTGCTTGGCATTTTTCTTTAGTTAAGCCTACATCTTT
ATTTGATTTGGTCTGAAAGAAATAGACGCATTTTCATTCAGGCAA


Right flanking sequence: Indices 1535153 -- 1535652
TTTGATGGTTCATGTAGGCTTGGGTCTTTCATTCGGGCCCTCTTGGGGCACCCTGTGGGCCAATG
CGTATAAGCTTGGGCTTTCTTAACGTGGCTCATTTGACGACTCAGTACATGGATGTCACGAGTCC
ATTGGAATAGAATATGGAATCTTTTCTACGTAAGCTGGTTGTACAAAGTTTGTTACAATGTGATT
CGGGTATATTATGTGGGCTCCGCAAGGTAGCCAGAGCCAGCCAGGTTTTCATTTAACAGGCATGA
TAGTCTTCAACTGCAGAAAAGTAGTGCGGAGAACTAGCCAGAAGTGTGCCTGCCATCAAATTCGG
TGACGCATGGCGGGATTCCTCTACCACTCTATAAATAGTGGGAGGCTCAATAAGTGTCTTCTTCA
TCAAATGAAAACCAAAGAAATTTCGTAATAGCACGTATAGCTATGGATGCTGCAAACAGGCTTTC
TGCAATTGCTGCCGAAATAGGGAAACTTAAAAATGAAATTCAAGA



Found at i:1536968 original size:18 final size:18

Alignment explanation


    Indices: 1536945--1536980  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

    1536935 AGGGAACAAC

                              
    1536945 GTTTTCATACGAAATTAT
          1 GTTTTCATACGAAATTAT

                              
    1536963 GTTTTCATACGAAATTAT
          1 GTTTTCATACGAAATTAT

    1536981 AGAGAATTAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44


Consensus pattern (18 bp):   
GTTTTCATACGAAATTAT

Left flanking sequence: Indices 1536445 -- 1536944
TATTCCCAAAGGAATCTCGTCTTAGTGGTTGTAGAGAGGGGTGAAAGATGGAGTTCGCGGCGTGA
AAGAAGGTGCTGTGCCTTCAAGTAGTGGGCCTCCTGGTCCATTGAATAATGTTGCCAAGCCCAAA
TTTTCAGTGGGACGATTCCTACTAAGACTATTAAGCCCATTAGGCCTGCTTCTCATTTAACTTCT
CCGCCTAGTCCATATGTGTCCACGATTTCTTCCCCTCAATTTATTTACAGATTAATTCCTCCCCG
AGCTTCGAAGGACCTCAACTCTGGTATAGTTATGGTTCCTCCTTCTTCTGACATGAACGTGCCTA
TACTTACTCAGCCATCGGAACCTACGGACAGAAAAGTGGGCATGGAAACCGATAATCCTTTTCCG
GATATGGGCTCTGATATGATTATTGATCCTCTTGCTCAGCAAGGAATTCCTACTCCTATTGTTAA
TCCATGAAGATCATCACATGGAATTTTCGGGGTACAGGGAACAAC


Right flanking sequence: Indices 1536981 -- 1537480
AGAGAATTATTGCGTCGTGAGAGACCTGATGTTATTTGTCTCTTAGAAACTAAAGCGGCACTGGG
GTATGGGTTCAAAGCTTGCTCGTAGGTTTCAATTTGATCGGGTTTACGAAGTAGCCGCATCGGGT
TTTGCTGTTTGCTGGTGGTTTGATCTTACTATGGCATCCTTCTTCTTTCAATTTGGTAGTTTCTG
CTTGCTCGGATCATAGTATACATACTGAGATTTCGGGGGGTGGTCGCCGCGTTCTTCTATCCTTT
GTGTATGTCCAGCCTTGCACGACTAGTAAGGCTATGTTTTGCGATGCTCTGAAGTTGTTGTTCGA
TTAATAAACCGTGGATTGTTATGGGTGACCTTAATGATATCGCTCTTATAGCCGAAAGGAAGGGT
GGCTCGGGGCTTCGCGGCGGTTGTCACCGGTTCGACCCGCGGGTAGGGGTTGGGTAGCACAAACA
TAAATCATGAACTCGGCTCTGATAAAGCAGCTTTTGAAACCGTGA



Found at i:1545817 original size:14 final size:14

Alignment explanation


    Indices: 1545798--1545825  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

    1545788 GGATTTCTTA

                          
    1545798 CCAGTCAATTCCCG
          1 CCAGTCAATTCCCG

                          
    1545812 CCAGTCAATTCCCG
          1 CCAGTCAATTCCCG

    1545826 ATCGTCTGCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.21, C:0.43, G:0.14, T:0.21


Consensus pattern (14 bp):   
CCAGTCAATTCCCG

Left flanking sequence: Indices 1545298 -- 1545797
GAATAGTGATGGATAGCTGACTCCTTCATCAGGAAAGTTCATAGGCTGCAAAGGAATCACTCTTA
GGCTTCAAAGTTATACCTGCACGGGTACGAGGGCCATTCCCTTACCGTATCCCAGATCCCAATCC
CGAGCGTATAAAATGTGCTTCCCGTGCTGCTAAGCCTTTTTCTATAGGTTTTACTCTTGCTAATG
TGTCTCCCACTCTGCTACTAGTCCAGAAGAAGACTCAATCCCTTTGCAAAGACCGGCTCGATGGA
GTTTCTTTCTGTGCTTAGTTGCACGCACGTGAAAGGCTCTTATCTAACAGTCTACGCTTTCGTTT
GGGTTTGGCTGCTTCAGGCCCTTGTCTAGTGTGGTAATAGGCACTCCCCTTCTGTCTAGTCTCCA
GTTAAGAATCTCTCTCCGCCTTTCAATAAGGAAACTCAAAAGAAGAGTTTGATCCTGGAAAGGCG
ACCAAGTGAAAGTGAATACTATGTTAGCTACGAGGGGATTTCTTA


Right flanking sequence: Indices 1545826 -- 1546325
ATCGTCTGCAATTCGCATAACAGCTTTAATATCGAAAATCATCTGTTGGTGTCGCTTAGGAATTT
CTGTTAAATAGAAGAGTGAGAAAAGAAGGAACTGGAAACCCCATTCCTGAACCGGTTGAGGAAGT
AGATTGAACCCTAGCTCGCCACCTCTGACAAGACCTTCTCAAGGACTTACTCTGGTTGACTCGGA
TGAGACCTTTAGATAGGAATTCTCACTAGAGACCGAAGAGAAGGAACTGCTCACACACTCGCTAC
GGGTGACGGGCTTCCCTTTTTCCTATTCTTCATCTTTATCTTTGAAGAAAGCGCTTTTAGTCTCA
CCGTGAACGCCACTTCTATATCGGCTCAGCTCGTTAGACAGCTCGTTCTCGTGCTTCAACTCGAA
TATGAGAGTCATAAGCAAGCCTTTCTTTATAGCTATAGGTACAGGTGCTGATACCTCGAGAGAAT
TTAATGCTACTTCTCCATATTTCAACTTAGCCATAGAATGAGTTT



Found at i:1546589 original size:19 final size:19

Alignment explanation


    Indices: 1546565--1546602  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

    1546555 AGGGAGAGGC

                               
    1546565 CTTTATTTCCTACTATCTA
          1 CTTTATTTCCTACTATCTA

                               
    1546584 CTTTATTTCCTACTATCTA
          1 CTTTATTTCCTACTATCTA

    1546603 TATGTGTGTG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53


Consensus pattern (19 bp):   
CTTTATTTCCTACTATCTA

Left flanking sequence: Indices 1546065 -- 1546564
AACTGCTCACACACTCGCTACGGGTGACGGGCTTCCCTTTTTCCTATTCTTCATCTTTATCTTTG
AAGAAAGCGCTTTTAGTCTCACCGTGAACGCCACTTCTATATCGGCTCAGCTCGTTAGACAGCTC
GTTCTCGTGCTTCAACTCGAATATGAGAGTCATAAGCAAGCCTTTCTTTATAGCTATAGGTACAG
GTGCTGATACCTCGAGAGAATTTAATGCTACTTCTCCATATTTCAACTTAGCCATAGAATGAGTT
TCATCTGCATCCCTTGAATAGGGAGCTATTGACTCCGTTCTTGTGAAACTCAATTTTAGACTCCG
TTATTTTGACTTAAGTTAGTCCCTTTCTGCTTACAAGTCTATTTATTATGCTATATAGTCTATCT
ATCCATCCAGTTATTTCATACTAGCCGTTCTTTGACGCATTATCTTATCGCCTCTTTGACGACTT
GATTAGAGAAGAACCCCTACTAATAGGGAATGCAGAGGGAGAGGC


Right flanking sequence: Indices 1546603 -- 1547102
TATGTGTGTGTATGTATCTAGCCAGCCTAAAACTCATGTACCATAATTACGTATGGGAATCTCTT
AAGATAAGAATTATCCCCTTTCCTCAGACCAGAAAACAAGAGCTCATCAGAACAGATTCCGCTAG
TAAATCTAATTCTAAATTGTTCACTTGGAGTTTAACCGGGATTAAGTTAGACTTTTTATTCTCTA
TAGAATTTCAACGAATAAGAAACTCTTAATCCTACTTATATGAATTCCAATTGCTCAACCAGTTC
CGTGGAGATCGTCCAGACATCGGAAACAAAATCCAAAGTATGCCAATGCTGCTTTAATTGAAGAA
AGAGGCTTTGCAGAACCAACAACGTATGAGGAGGCATCCAAGAAAGTGGAATGGAGTAGGGCTAT
GGAAGAAGAAATTCAAGCCTTGAACCAGAATGAGACATGGTAACTAATGCCAAAGCCAAAGATTG
CTGAACCCATATCATGTAAATGGGTTTACAAGGTGAAGACACGTC



Found at i:1548948 original size:23 final size:23

Alignment explanation


    Indices: 1548918--1548963  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1548908 CCTCCTCTCT

                                   
    1548918 TGAATGAACAAATGTCATCAAGA
          1 TGAATGAACAAATGTCATCAAGA

                                   
    1548941 TGAATGAACAAATGTCATCAAGA
          1 TGAATGAACAAATGTCATCAAGA

    1548964 ATTGGAAAGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22


Consensus pattern (23 bp):   
TGAATGAACAAATGTCATCAAGA

Left flanking sequence: Indices 1548418 -- 1548917
AGTTTGTCTGCGCTTTAAAAAGGCGATTTAGAAGATGTTCGTACCCAACGCTGACTGTATGCAAA
CGATCTACCGAATAGAGCCTGCACAAGTTCAAACATGACTAAAAGAGGCCACCGATCTGTGGTGG
ACTTAAGGTCAATAGAATGAACTGTGCCTGGGACTCCAGCCAGCCGGTCCAGCGGGTCCGTCTGA
TTGAAGGTTCCATCCATGGGAATTGTCTTCAATACAGAGGCACACCATTGATGCAATGGGAATAA
CAGTCGCTGATTCACGTAGTTACCTACGGCGAATAGCCTCCTCTTCCCGTCCACAGTACAAGCGC
AACATAGTCGGCCCGTACGAGCCTCTACTCCCAGCTGATCAGGACTGGTAAGATAGGGGCCAATA
CGTCTCTCGAACCAATCAAGAAAGCAATGAGTAATAGTCTCGTTGGTTGGGTCGAAAGGATACCG
AACATAAGGTGGCCACAAGCATCCTTGGGAGTAGCCCTCCTCTCT


Right flanking sequence: Indices 1548964 -- 1549463
ATTGGAAAGCGGATAACTCATAAGGCAAACTCAGAAATATGGACTTCTTGGCGAGAGCCCTCAAA
GGCTTCCCTGAGTCGTCACTACTATTCCTGAGTAGTCTTGTGTACCACGCGGACGTCGGTACCGT
CTTCCATGTAGGAAGAAAACGCAGACCCTCTTGCAAGGGAATGCGCCTGATATCAGGTATATACC
GATCTATCAGGTGCCGTATCAGTGGTTTCATTTCTGACACTACTAACACGACGCTATCCAGATCT
ACAGGGGTGGTGACACTGCTAAACGTGTCTGCCGTTACCTTGGAAGCCAGCTCTATAAGCTTGGT
AACCGAGAATAACGACATATACAGTCGCACAATATCACTATTGCCCTTACATATCATCTCTCTAT
GAAAAGAAGGGATGATACGAGGAATACCTGACCTAGTAAGGGAGACAAATACGGACAGATCTAAA
GGTGACTTATCATCACCCGCAAAACGTTGAAGACACACTCTACAC



Found at i:1553486 original size:18 final size:18

Alignment explanation


    Indices: 1553463--1553499  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

    1553453 ATGATGTCTG

                              
    1553463 AATTATGGTGGATTTCTC
          1 AATTATGGTGGATTTCTC

                              
    1553481 AATTATGGTGGATTTCTC
          1 AATTATGGTGGATTTCTC

             
    1553499 A
          1 A

    1553500 TGGTTTGTTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43


Consensus pattern (18 bp):   
AATTATGGTGGATTTCTC

Left flanking sequence: Indices 1552963 -- 1553462
AATCTCTGCTTCATGCGTTAAGAGACTGTTATAAAGCTCGTTATATTTGGTTATCTCTAAACGCT
GCTCTATCGCAAAGAGACTTCTTCACTTTGTATTTGCATAGTTGGATATTTTCAAATTGCCAAAG
TAGCGAGCTGCTTTCGTACATTGCTTGTGTAGAGATTTTCATGTTCTCCATTTGGTACATCTGGT
ACTGGAGAAATTGTTTGCTCCATGATTCTACTTTCTCTTTTCCTCTCAATAGTAAACAAATTATT
CTAACTCGTGACAAGTAAGCAGTTGATATTCTTTGTAAGTTTGACCGCAGGTTAAAACATGAAAT
CTTAGTCGGTTGGCTTCCACCTTTGGGTTCTTCTGTGAAAGTCAATGTTGATGGAAGTGCTCGAG
GTAACCCTGGTATAGCAGCTGCTGGTGGTCTTGTGAGGGATAGGCATGGGAAATGGTTAGGTTAG
GTGGCTTCACTCGCTATGTCGGTTTCTCTTCCATAATGATGTCTG


Right flanking sequence: Indices 1553500 -- 1553999
TGGTTTGTTACTATGTTGGAATAAAGGTTTCAAAGAAGTTGAGCTGTAAACGGATTCACTCTCGG
CAGTTGTGAAGATTAATTCTCTTCATACTACATCAGGGCCTCACTCCAAACTTTTGGATGCAATC
CAGAAACTCCTTGCAAGACCATGGCGGTCTTTGTTCTATCAAACATATTTATCGATAAGCTAATA
CCTGTGCGGATTGGATGTCCACTCATTTTGATCACCTAGCTTTGGGGTTACATACTTTTGATACT
CCACCACAAGGGATTTCATCGCTTTTCCTAGCCGATGCCATGAACACTATTAGATAAATTAACGA
CATCTACTTCAAGACCATATTTTGCCTTTACTTTAGCGACACGAGCAATCTCCAATTCCCACTAA
TCCTCATCGCTGTCCTGAGCCTGATTTTCATACTATGAATCAGCAATGGCTAGGTATACCCCGAT
TAAGCGCCTCAAGAGAAGTAAGTTGGGACGGTGTCTGGTACACAT



Found at i:1555389 original size:25 final size:26

Alignment explanation


    Indices: 1555356--1555410  Score: 103
    Period size: 25  Copynumber: 2.2  Consensus size: 26

    1555346 CGAGAACCAG

                                      
    1555356 ACATGAGAAGAAGAACATCCATCATA
          1 ACATGAGAAGAAGAACATCCATCATA

                                      
    1555382 ACAT-AGAAGAAGAACATCCATCATA
          1 ACATGAGAAGAAGAACATCCATCATA

                
    1555407 ACAT
          1 ACAT

    1555411 CAAGCTGAGT


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  25   25  0.86
  26    4  0.14

ACGTcount: A:0.51, C:0.20, G:0.13, T:0.16


Consensus pattern (26 bp):   
ACATGAGAAGAAGAACATCCATCATA

Left flanking sequence: Indices 1554856 -- 1555355
GGTAGCGCCTCTAGTCTTAATGGCTCACGGACGGGAATAGAGAAAGAAAGGTATGCGATTGGATC
CTCCCTTCTTCTCAAGCGACAGGATATCTAAAGGTCTATCCACAACATTCATTGCAGGCGTAGTA
CTGAAAGCGGCATCAGCAGTTTTTTCCCGTACAAAGCCAAACTCACTCCTCCCCAAGGTGGTTTG
GTACTCGATCCAAGAGAAGGTCTTATGGTTCACGTAGATCTCTGGACTCCCTGACAAGAATGCTT
GCCTCATAAGAAGCTTGTGTCCAAAACTTCAACTATCCATTACAGCCCGGGCCCCTTTTTTCCAC
GTAGTGCAAAAGAGATCGGGACTACTACACACTGGTGGATGTATCAAAAGTGCCAAAAGTCAAAT
GGCCCAATTATCCCTACAACAAGCAAAGGCACTAGAAGCAACAGTTCCAAGGAAGAAAGCCCAGT
GGCTCAGACTACATGCAGATGCAGCTGAACGGGAACGAGAACCAG


Right flanking sequence: Indices 1555411 -- 1555910
CAAGCTGAGTAGTTGAAGCTTCACCAAAAAGAAGAAGATCATCAGCAAAGCAAATATGAGAAATA
AAAAGGTAAATGCTGACCATTCCAAATTAGAGAAAAAGTATTAGTAGAAATAATATTCATGATGA
GATTTACCCAAGAAGTAGGAAGCTGAATTTCTTCAAGGACTTGTTGCAAAAAACTCCATTTGATA
CGATCATAAGCTTTCTACAGATCAACCTTAATAGCCACAGTGCCGTTTTTCCTCTTCATAGTTCT
CATGGTGTGAAGGGCTTCCTGCACCACGATAATATTGTCTGATGTATGGCGCCCAGGAAGAAAAC
TAGATTGTGATTTACTGATCAAGTTGTCCAAGAAAGGTCGGAGTCTATCAACCAGAAGCTTAGTA
ATGATTTTCAAAGGAACTGTACAGAGGCGAAATTGAGAAATTCTTTTAAAGTTCGATTGAGAGTA
GGATCAATTTTACCATCCTGAAGAGCAGATCGTACCAAAGCAAGG



Found at i:1557763 original size:25 final size:25

Alignment explanation


    Indices: 1557729--1557778  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1557719 GGCTTGAAGG

                                     
    1557729 CCAGACTTAAGGGTAGCTCGATCAA
          1 CCAGACTTAAGGGTAGCTCGATCAA

                                     
    1557754 CCAGACTTAAGGGTAGCTCGATCAA
          1 CCAGACTTAAGGGTAGCTCGATCAA

    1557779 TAGCTCGAGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20


Consensus pattern (25 bp):   
CCAGACTTAAGGGTAGCTCGATCAA

Left flanking sequence: Indices 1557229 -- 1557728
TAAATGTCATAAATAAATATGTAGAAAGAGAGAAGAAAAACAATTAATTATGCATAGCAGAATTA
GTGGAATCCATGAGAAGCTCATCCGAAGAGTTTTCACCAGGAGAAAAATCTTCTTCTTGCATGAC
AATATCATTTTCAACTGATGCTACAGTAGTGTCAATAACTTTTTCTATAGCTGCTCCATTAGTTA
CAACTCCAACCACACTATTATCAATGGGATCTTCAACAATAGGAAGAGGTGTGGGGAGGGGGGTA
TTTGGGACAAAGTCAACTGAATCAATGGGGGAATCAATAGAAGAAGAATGGAATTTAGGATGATT
AGGAGGCAAAGGAGAGGTGGTTGGCAAAGTATCAGAAGTAGAAGCGGAAACATGGGAAGGTTCAG
TGGTTGCAATTAATGGTACGGATGTGGCAAGGGAAGAAGGTGATTTAGGAGTAGCTTTGGTTGGC
TTTTTGGTACTGGTTTTATTGGCTAAAGCTGCAGTGGCTTGAAGG


Right flanking sequence: Indices 1557779 -- 1558278
TAGCTCGAGATTGTCGCCCATTTTGATCATTGTTAGACACCGTAACTGGAGCCAGTGGAGGAGCA
ACATCATCAGAGTCATTGGCATCTACATTTTCTTCCAAAATAGCAAAGCGTGCGGGCTCCTATCT
GACTATAAAGCAATGTGGTGCCTGACCTCAGAGATGTCATCGCTTTTTCGAGAGCTATAACCTCT
ACGGCTTACAACATAGGTCTAAATGAGCCTACCTTTCAAAACTTAGCAGCTCTTCCTTTGATTGA
TCAATCAAGTACGTCAACTCATCGCATACCCCGAGAGTACGAAGCGGTTCTGTTCGTTCCTTCTT
CCTTTGCTAAGTACTGAAGTTTAGGACAGACCACAATTTCTAGTTATTACAGCGAGGTAAGATTA
CAGATCCCCCAGGACAGAGATCGCAGATTATTAAGTCTTGAAATATGAATAGACACTAGAGTTGT
GGCAAGCAGACACTTTTCATCTGAAAAGAAAACTATATCTGATAC



Found at i:1558338 original size:28 final size:27

Alignment explanation


    Indices: 1558303--1558355  Score: 97
    Period size: 28  Copynumber: 1.9  Consensus size: 27

    1558293 ATTCCATGAG

                                       
    1558303 AGAGGTGTAGGTTCCATTCTGACAACT
          1 AGAGGTGTAGGTTCCATTCTGACAACT

                                      
    1558330 AGAGTGTGTAGGTTCCATTCTGACAA
          1 AGAG-GTGTAGGTTCCATTCTGACAA

    1558356 AAGGGCTGCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  27    4  0.16
  28   21  0.84

ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30


Consensus pattern (27 bp):   
AGAGGTGTAGGTTCCATTCTGACAACT

Left flanking sequence: Indices 1557803 -- 1558302
GATCATTGTTAGACACCGTAACTGGAGCCAGTGGAGGAGCAACATCATCAGAGTCATTGGCATCT
ACATTTTCTTCCAAAATAGCAAAGCGTGCGGGCTCCTATCTGACTATAAAGCAATGTGGTGCCTG
ACCTCAGAGATGTCATCGCTTTTTCGAGAGCTATAACCTCTACGGCTTACAACATAGGTCTAAAT
GAGCCTACCTTTCAAAACTTAGCAGCTCTTCCTTTGATTGATCAATCAAGTACGTCAACTCATCG
CATACCCCGAGAGTACGAAGCGGTTCTGTTCGTTCCTTCTTCCTTTGCTAAGTACTGAAGTTTAG
GACAGACCACAATTTCTAGTTATTACAGCGAGGTAAGATTACAGATCCCCCAGGACAGAGATCGC
AGATTATTAAGTCTTGAAATATGAATAGACACTAGAGTTGTGGCAAGCAGACACTTTTCATCTGA
AAAGAAAACTATATCTGATACACCACCAATGGGCAATTCCATGAG


Right flanking sequence: Indices 1558356 -- 1558855
AAGGGCTGCTTAAAATTTGCACACTCCCGGATCTCCAATGACAACTGGTTAGGGCTAAACGAGCC
TTTTGGAAAGGATACAAGACCAGGACACTCGGGAATTCTCAGATATTCAAGAGAAGTGAGACATG
ACATCTGATCAGGCATCGACCTAAGGGCATATCGGAGAGGGAAGGAGCTAGATTCGATCGAAGTC
TTGATTTCACGAGCTAGCATCAAATCTTTGGGACCGCCTTTGAAAGGCCTACTGCAGTAAGGAAT
ACCGCTTGCTACCTCTGAACGTAAACCGGCTGAGACTTCTCAACCGCTGACCTGAAGAAAGAGGG
AATACTCCGTTTCAAACTTCCGGAAGAGGCCATGATTCAAAACTATATAGGGAAGAACTATCAGA
ACTAGCTGGATCTGCAAGACCTGCCTTTAAAACCTTTAGTTCTCGTGTCCATAATATGGCTCAAT
TATGAAACGTTAAACGTTTGGGACCTTCTCCAAACTCTGCGGGCA



Found at i:1559392 original size:21 final size:21

Alignment explanation


    Indices: 1559366--1559408  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1559356 GCAAATTAAC

                                 
    1559366 CCATTGTTGAATCCTTAGTTT
          1 CCATTGTTGAATCCTTAGTTT

                                 
    1559387 CCATTGTTGAATCCTTAGTTT
          1 CCATTGTTGAATCCTTAGTTT

             
    1559408 C
          1 C

    1559409 TTGTCTCCAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.19, C:0.21, G:0.14, T:0.47


Consensus pattern (21 bp):   
CCATTGTTGAATCCTTAGTTT

Left flanking sequence: Indices 1558866 -- 1559365
GGTTGCTAAGCATTGTCGTTGTCTTTCTCCAGACAGAATCCTAAACAAAATCCTTTGCTGCCGCT
ATTGATCGCGTCTCTCTGACTGACTTCCTTTCTCAGGACCACACTTAATTTCATCACCAACCTAA
AACTCCTGTGCTATCCGGAGTGGCTTTACATTTCTATCCTTCTTCAATTGATTCACTTCGCTAGA
AATAGAAAAGCCTTGAAAGATCCGTTCCAGTCAGTAGGTTCGAAGCCTGTCACCTTGATGTGAGG
CTGAAGTTCCAATTACTAGAAGACATGAAGAGATAGGCATTATTTCTTGGTTTAAGCTTTCGCTC
TAACGCCCTTAAGACTCGCACCTATTCCAAGATTTTAAGGGGTACCTCTAGCTCTACGCTCATTA
GCTCGTAGCTGATTTGCTGGCTTACCCAAAAGATATAAGAGAGAAATCAGTAGAACCAGAATCTA
AAGACTGACTTTCCCCTTAAGCCGTAGTAGCCGTAGCAAATTAAC


Right flanking sequence: Indices 1559409 -- 1559908
TTGTCTCCATAATGGTATGTGATGTGAAAGGGTTAGAATCTCTTCCATCATCCCTTTGCATTAGA
TTGGATGAGGGGAGTGGGCTATAGATAGGATTAATTAATGGCACATGAAGAGTGTATGTAAGCTA
TGCTCTAAACCCAACCTGAGATGCTGCTTCTTCGCCCTCTACTGTTTTAGAAATATCATAAGAGA
AGAAAGATTACGGAAGTTTATCTGAATGTTCTCATCTAGATTCTACGATTCACAAAGCGGCAGGC
CCGGTGCGCCCTCCAGTAGTGCTTCGAAATGAGGCCGGAGGGCCGGATAACCTGACGAATACCGC
CCTAAGATCGAGCATGAAGGATGAGATAGAAAGAGAGGAAAAAAAGGCTACTTTGCTCAGCTCTT
TTAGGCTGAATTCGCTGCTTAAGAACAAAAAAGCTGTTCCTCGAAAAATGAGATATAGTTTCGTA
TTACTCCTGCCTATCGGCGAACTTGGAACCCTGTAATGGCGAATG



Found at i:1560070 original size:24 final size:24

Alignment explanation


    Indices: 1560038--1560084  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1560028 GCGGTACTAA

                                    
    1560038 AGAGAGAGAGAGCCCCTACACAAC
          1 AGAGAGAGAGAGCCCCTACACAAC

                                   
    1560062 AGAGAGAGAGAGCCCCTACACAA
          1 AGAGAGAGAGAGCCCCTACACAA

    1560085 GATCTCCTCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.43, C:0.28, G:0.26, T:0.04


Consensus pattern (24 bp):   
AGAGAGAGAGAGCCCCTACACAAC

Left flanking sequence: Indices 1559538 -- 1560037
ATGCTCTAAACCCAACCTGAGATGCTGCTTCTTCGCCCTCTACTGTTTTAGAAATATCATAAGAG
AAGAAAGATTACGGAAGTTTATCTGAATGTTCTCATCTAGATTCTACGATTCACAAAGCGGCAGG
CCCGGTGCGCCCTCCAGTAGTGCTTCGAAATGAGGCCGGAGGGCCGGATAACCTGACGAATACCG
CCCTAAGATCGAGCATGAAGGATGAGATAGAAAGAGAGGAAAAAAAGGCTACTTTGCTCAGCTCT
TTTAGGCTGAATTCGCTGCTTAAGAACAAAAAAGCTGTTCCTCGAAAAATGAGATATAGTTTCGT
ATTACTCCTGCCTATCGGCGAACTTGGAACCCTGTAATGGCGAATGGCACGAAGGGAGTGTGAAT
TGGCTACTCACATCATTCAGCTGCTATGGGAAGTGGTATCTGGGAAATGTTGGGAGCTGCTACTT
TGCTCACCTAATCATACTCAAAGCCTATATTATCAGCGGTACTAA


Right flanking sequence: Indices 1560085 -- 1560584
GATCTCCTCATTCAACTGATAAAGTAGCAACGAATAGGATTTTCTGTGTAGCGAAGATGGCGATC
TTGTCGACGAATGGTCTAACGAGCTGAGCCGTAAGAGTTACATTCACAAAATTAGAAGATTAGAA
TAACAGGACTCATAGGGATTAGAGTCATGGTTCACGTCAATCAATCGCGCAATGGACGAGGCAAG
TGCAAAGCAGAGTAGTCAGATGGGAGTCATTTTTACGTTCTGTTCTCTCCCCTTGTTTCGGGGAT
AATGAAACTCCAGACAAAGACGGACGCGGAACAGGACCAAAGGCTGAACCGCTGAAGGGATCTCA
GGTACCCGTCAGATTCAGACAACTATCTTGTAAGCAATTAACTCTTTTAGTAGATTGTACTTCTA
TTTCAATTGTTGAAACTGTCATCATCATAGAAGCTACTAGCTTTCTGTTTTCGCAAAGAAGAGGA
CTTGTAAATAGAAAGATGCCGAAGCAGCGAATAGAATAGAGGAAC



Found at i:1560872 original size:15 final size:15

Alignment explanation


    Indices: 1560852--1560881  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

    1560842 CAGCCACCGA

                           
    1560852 TTAATAAGCATTAAT
          1 TTAATAAGCATTAAT

                           
    1560867 TTAATAAGCATTAAT
          1 TTAATAAGCATTAAT

    1560882 AAGAATTTGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40


Consensus pattern (15 bp):   
TTAATAAGCATTAAT

Left flanking sequence: Indices 1560352 -- 1560851
CTCCAGACAAAGACGGACGCGGAACAGGACCAAAGGCTGAACCGCTGAAGGGATCTCAGGTACCC
GTCAGATTCAGACAACTATCTTGTAAGCAATTAACTCTTTTAGTAGATTGTACTTCTATTTCAAT
TGTTGAAACTGTCATCATCATAGAAGCTACTAGCTTTCTGTTTTCGCAAAGAAGAGGACTTGTAA
ATAGAAAGATGCCGAAGCAGCGAATAGAATAGAGGAACTAGGCCTATTGGTAGGCTGAGTCTAAT
GTATTGATTGCTGAGATGTTGTGCACAACCAGGCTTTTCCGGGCAAGGAGACGTCAGTAGGTGAC
ATAATGTAGCTAATGTAGCTACAGCAGCGAACGGGGAGAAGGTAAAAGCGAAGCGTAGCGAATAA
GTATCTGAGGTAATTTGTGCGAAGCGATGAAGTATGTGAAAGTCTTAGTTGTCGGGGAGCTTATA
TAGCTACTGCGCGTTAGCCGCTAAGAGTCTTTTATCAGCCACCGA


Right flanking sequence: Indices 1560882 -- 1561381
AAGAATTTGAACATCAAACTATGAAATGAAATCCCGAATCTCATAAAATAAACAAGTTCAGGTCC
CGCCATCAATTCATAAAGTCCATGCCGACCATACCCAAGCCGAAGGCTAGGACCGAAACACATGT
AAAGCATAGGAAGAAGAACTAAATATCGTAGATAACTGAACTTCGAAAGCATCAAGGCTTCACGC
TCTATGAAGTAAGTTCTGCGATCTGCTTTTGAAGTGCTTTCTGGCTAACTGTAGTATAGGCCTCC
GGTCTTCTTTCATCTGATAAGCTGTTAGTAAGGCGAAGAGGTCTAAGGCGAAATAAAAGAGTCGA
GTTATTTGACATGCTGCTAAGTAAGCTTTTTAAGCTTCTAGGAGTGTCGACCGAGAAGAGATTGC
AAAAGTGAAGCCGGAGTTACGACCACGATGCTACCCAACGAAGGAAGTCACCCGGTATTCAATCC
CCTCTCGAAAGGCAGTTCGAATACCCCAACTTCCTCAGACAAGTA



Found at i:1565396 original size:30 final size:30

Alignment explanation


    Indices: 1565360--1565419  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

    1565350 GTTTGCGCTG

                                          
    1565360 CAGATGTTTTCTAAGGGGCTTTACTTTACA
          1 CAGATGTTTTCTAAGGGGCTTTACTTTACA

                                          
    1565390 CAGATGTTTTCTAAGGGGCTTTACTTTACA
          1 CAGATGTTTTCTAAGGGGCTTTACTTTACA

    1565420 GCGGGTTTAG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40


Consensus pattern (30 bp):   
CAGATGTTTTCTAAGGGGCTTTACTTTACA

Left flanking sequence: Indices 1564860 -- 1565359
TCCATCCATTGGACTCTTCCATCGTTTATCGGTTCAGCTACATCGCACAGCTAACCTTCGTATTT
CTTTCGAAGGGAAGTAAGTAGGGCATTAGCATTCCTAGTTGGATCTCTCAAAGTTTAAGATTTCG
AATTCTTTTTAGGAAGGGAAATGTCCTCACGTTGAAAAATACTGTGTTGTAACAAATGCTTAAGC
CAGAGTTGAGGCCTTATTTTAAAGCTCACCTACATTCTTCCTATTCTTAGCTATCGCGAACACGC
TTCTTTGCGGGTGCCTATAGTGTTTGGGCCTCCATTGCTCCATTGCTTGCTTGGGCCACGCGTAC
CTCCCTTGCTAGGTCCCCTTCTTCATACTCGTCCTTGACTTAAGTGATTTAATCCGTTGTTTATG
GTCTCCCTAGAGGTTATTCTCAGGTGCTGTTAAGTTCTCCCCTTTCCTTTTAGTCCGGTACTGGG
GAAGAAAACCTATACCTATAGGCAGGAGAAGATGGGTTTGCGCTG


Right flanking sequence: Indices 1565420 -- 1565919
GCGGGTTTAGGGGATGTCTTCCTTGCTTATGCTTGCTTTGTCTATTGCTCTCGAGGCTAGCTAGT
AGGAAGAGCGCAGGAGGTTTCTCTCAAGAGCGAGTTATCAACTATTGAATGAACATCTTCAGTGG
TAGTGGATTCAGCTCAATCGGTTATGGAATGAGGTGGATTTTGATTCGAAATAAATATATCGTAA
TCTCATATGTCCCACTCTCTCGAGAAAAGATAGACTCAAAGCACGTCAAGGCAGTCTGGGGCTTT
ACCCCCATAGAATGGTAAGGGGGTTCTAGAGTCCTAGTCCAACAACCGCAAGCAACTTACTCGCG
TTACATCCGCTAACGCTCAACCGACTAAGTACGAAGGCTAGTCGCCTTAAAGAAAAAAAAGAAGC
TCTCGGAAAGATAGTTGTCAGGAGAAGCTACTCTGTAAACACAATCAATATTGAGTTCTGTTAGC
GGTCTTCGATGAACAGAGGCGGGCTAGTAACAGATTATTTATTGG



Found at i:1569342 original size:15 final size:15

Alignment explanation


    Indices: 1569322--1569351  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

    1569312 AGCAGACGGG

                           
    1569322 TTTATAGACAATCTA
          1 TTTATAGACAATCTA

                           
    1569337 TTTATAGACAATCTA
          1 TTTATAGACAATCTA

    1569352 ATGGAATCAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40


Consensus pattern (15 bp):   
TTTATAGACAATCTA

Left flanking sequence: Indices 1568822 -- 1569321
ATCGGATAAGTTGCATTTTACCGTTTAGGTATCAAGTTGATTTACACTAATAAATAGAATGCAAA
ATACTCAACTTGGATAAAAGACCGTAAAAATGGGCATCGAGTCAGTAGGAAATTCAGATAAGACT
CACCCTCACTCAGTCCAAAGCCCTTAAGTAGCAGTTTTCAGAGCCGATGCTCTCATCTTAGGCTC
GAAGTTCATGAGTAAAGAATCAGCAGTTCAGGCAAGTTGATACCTTAACAGCGGCGAAAGCGAAA
GGGATGTAGTTGATTGGGAGTACTTGTTCTGTCTTGGAAGAGTATGACGGAAGACCGATGCCTTC
TATTCTAGAGCTTTCTCAGAGCATTCGTTTACCTCTGGCTTGAGAGGTTGAAGGTTAGAAAGACA
TGGGGTGTTCTGCTAAAACATTCAAAGGGTCTCAGAGGACAGGTTAAAGCGCCTAATCCGTCTTA
AATGCTTTTTCACGTACTGACTTCTCTTCGATTGCAGCAGACGGG


Right flanking sequence: Indices 1569352 -- 1569851
ATGGAATCACAGTCCTTAACAAAAGCCAAGTCTGGGGATGGTGCAAGATATGGCTCTTCCTCTTC
TATTTGCTCAACAGGAAGTACTAATTTCGTATAAGGAAAAGAAGTGAATCCACATATGGAATTTG
AATTCCTAATACCGGGACTTAAATCAATCGAATCAGACCCACTTACCAGCCTTCCCACGCGCCTT
CCCATTCGAGCCCTTTTGAGAACGAAAAGAAAGACTTCGGTTGATTTCTCATCTCATCGACAAGA
TGAAGAGGGATTTAAAGACATTTACGAATAACGAACTCCTAATATGATAGCAGCGGGAAATGGAG
AATGTGTGTCGACTTTTAAGACCTTAACAAGCCATGCCCCAAGGGCTGCTTTCCGCTTCCATCAA
TCGATAGACTTGTTGACTCTTCTAGGGGTACCAGTTCTTCAGCTTTATGGATGCTTTTTCTGCTT
ACAATCAAATAGCTTTAGATGGGAAGGACCAGGAAAAAACTTACT



Found at i:1571207 original size:22 final size:22

Alignment explanation


    Indices: 1571182--1571226  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1571172 AAGGTGGAGG

                                  
    1571182 CACTTTAAGAGCTGAGCATTCA
          1 CACTTTAAGAGCTGAGCATTCA

                                  
    1571204 CACTTTAAGAGCTGAGCATTCA
          1 CACTTTAAGAGCTGAGCATTCA

             
    1571226 C
          1 C

    1571227 TAAGAGTTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27


Consensus pattern (22 bp):   
CACTTTAAGAGCTGAGCATTCA

Left flanking sequence: Indices 1570682 -- 1571181
CCCTTTTAATTCTTTTTCACAGACTGAGATTGTTAGTACTATTTAGTTCTTCCCATCCAGCTCCA
CTATCACATGAAGTATTGGATTCGGAGTCCTAGTCAACTAGCCCCAGAGGAATACCAGAAGATAG
AGCATTATGATTGGCAGGCTGGACGGATGTAGCAGCTATTGCTATTTCGGTAGGCTCAAGCGTTG
ATTCTGCTGATTCTCGGGAGAATCTATTGGTTGCTTCCCTACGATCGATGTGATTCTCCGGTAGA
AGCTTCTACTTCTAAGGTTGATCTCCACTTATTGATTGCTTTATGTCCCCTTATTTCTTATGGAT
GAGTCCTTTGATGATAGGCCTTCAAAGTCGATTTAACCTCGAATCAGACCAACCTTATCGAACTG
TCTAGCTGTAGAAGTCATCGCTCTTCCATCATACTCATGAGAATCAGAATCAGAATTTACTGCTT
GAGAAGGGGTAATGGGCATTGCACCTGACACGCATAAGGTGGAGG


Right flanking sequence: Indices 1571227 -- 1571726
TAAGAGTTCTTTTCGAAATATTAAAATATACTATCTAATGTATGGGGTATTTGTTGATCAAAGCA
AATGAAAAAGCTTAAACTTACAGGACGGCCTTACGGGAACAGTTGGTAAACGAGAACCAATACAA
TAATAATCCTTTACTTTAATAATAATCCTTTACTTTAATCAATACAGATACAAAAGTTCAAATGG
TTGGCAGACAAGCCCGGAAACGCACAGCAATATACATCTTCCAAGTCGAATAAGAATAGCTAGTT
TTCCTTTTTTGCCCGAGACTGGAACTCTATCTAATAGTTGACCTATACCTATCTTCGTTATCGAT
CATGACTTCACTGGAGCCGAACCGGTGTTAACTATTTATTAGAGGATCGGGAACTCATCAATCCA
TGCTTATATGCCACCTCCATTATTAGATAGAGCCACCTACATTCCATTAAAAGAGCACACACTTC
CAAGGATACAAGCCAGTCCTTACTTAAGAGGGAGTCCTTTCTCTT



Found at i:1571232 original size:18 final size:20

Alignment explanation


    Indices: 1571186--1571232  Score: 62
    Period size: 22  Copynumber: 2.4  Consensus size: 20

    1571176 TGGAGGCACT

                                 
    1571186 TTAAGAGCTGAGCATTCACAC
          1 TTAAGAGCTGAGCATT-ACAC

                                 
    1571207 TTTAAGAGCTGAGCATT-CAC
          1 -TTAAGAGCTGAGCATTACAC

                   
    1571227 -TAAGAG
          1 TTAAGAG

    1571233 TTCTTTTCGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    6  0.24
  20    3  0.12
  22   16  0.64

ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26


Consensus pattern (20 bp):   
TTAAGAGCTGAGCATTACAC

Left flanking sequence: Indices 1570686 -- 1571185
TTTAATTCTTTTTCACAGACTGAGATTGTTAGTACTATTTAGTTCTTCCCATCCAGCTCCACTAT
CACATGAAGTATTGGATTCGGAGTCCTAGTCAACTAGCCCCAGAGGAATACCAGAAGATAGAGCA
TTATGATTGGCAGGCTGGACGGATGTAGCAGCTATTGCTATTTCGGTAGGCTCAAGCGTTGATTC
TGCTGATTCTCGGGAGAATCTATTGGTTGCTTCCCTACGATCGATGTGATTCTCCGGTAGAAGCT
TCTACTTCTAAGGTTGATCTCCACTTATTGATTGCTTTATGTCCCCTTATTTCTTATGGATGAGT
CCTTTGATGATAGGCCTTCAAAGTCGATTTAACCTCGAATCAGACCAACCTTATCGAACTGTCTA
GCTGTAGAAGTCATCGCTCTTCCATCATACTCATGAGAATCAGAATCAGAATTTACTGCTTGAGA
AGGGGTAATGGGCATTGCACCTGACACGCATAAGGTGGAGGCACT


Right flanking sequence: Indices 1571233 -- 1571732
TTCTTTTCGAAATATTAAAATATACTATCTAATGTATGGGGTATTTGTTGATCAAAGCAAATGAA
AAAGCTTAAACTTACAGGACGGCCTTACGGGAACAGTTGGTAAACGAGAACCAATACAATAATAA
TCCTTTACTTTAATAATAATCCTTTACTTTAATCAATACAGATACAAAAGTTCAAATGGTTGGCA
GACAAGCCCGGAAACGCACAGCAATATACATCTTCCAAGTCGAATAAGAATAGCTAGTTTTCCTT
TTTTGCCCGAGACTGGAACTCTATCTAATAGTTGACCTATACCTATCTTCGTTATCGATCATGAC
TTCACTGGAGCCGAACCGGTGTTAACTATTTATTAGAGGATCGGGAACTCATCAATCCATGCTTA
TATGCCACCTCCATTATTAGATAGAGCCACCTACATTCCATTAAAAGAGCACACACTTCCAAGGA
TACAAGCCAGTCCTTACTTAAGAGGGAGTCCTTTCTCTTTAAGAA



Found at i:1571379 original size:19 final size:19

Alignment explanation


    Indices: 1571355--1571400  Score: 83
    Period size: 19  Copynumber: 2.4  Consensus size: 19

    1571345 GAACCAATAC

                               
    1571355 AATAATAATCCTTTACTTT
          1 AATAATAATCCTTTACTTT

                               
    1571374 AATAATAATCCTTTACTTT
          1 AATAATAATCCTTTACTTT

                    
    1571393 AATCAATA
          1 AAT-AATA

    1571401 CAGATACAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  19   22  0.85
  20    4  0.15

ACGTcount: A:0.41, C:0.15, G:0.00, T:0.43


Consensus pattern (19 bp):   
AATAATAATCCTTTACTTT

Left flanking sequence: Indices 1570855 -- 1571354
ATTTCGGTAGGCTCAAGCGTTGATTCTGCTGATTCTCGGGAGAATCTATTGGTTGCTTCCCTACG
ATCGATGTGATTCTCCGGTAGAAGCTTCTACTTCTAAGGTTGATCTCCACTTATTGATTGCTTTA
TGTCCCCTTATTTCTTATGGATGAGTCCTTTGATGATAGGCCTTCAAAGTCGATTTAACCTCGAA
TCAGACCAACCTTATCGAACTGTCTAGCTGTAGAAGTCATCGCTCTTCCATCATACTCATGAGAA
TCAGAATCAGAATTTACTGCTTGAGAAGGGGTAATGGGCATTGCACCTGACACGCATAAGGTGGA
GGCACTTTAAGAGCTGAGCATTCACACTTTAAGAGCTGAGCATTCACTAAGAGTTCTTTTCGAAA
TATTAAAATATACTATCTAATGTATGGGGTATTTGTTGATCAAAGCAAATGAAAAAGCTTAAACT
TACAGGACGGCCTTACGGGAACAGTTGGTAAACGAGAACCAATAC


Right flanking sequence: Indices 1571401 -- 1571900
CAGATACAAAAGTTCAAATGGTTGGCAGACAAGCCCGGAAACGCACAGCAATATACATCTTCCAA
GTCGAATAAGAATAGCTAGTTTTCCTTTTTTGCCCGAGACTGGAACTCTATCTAATAGTTGACCT
ATACCTATCTTCGTTATCGATCATGACTTCACTGGAGCCGAACCGGTGTTAACTATTTATTAGAG
GATCGGGAACTCATCAATCCATGCTTATATGCCACCTCCATTATTAGATAGAGCCACCTACATTC
CATTAAAAGAGCACACACTTCCAAGGATACAAGCCAGTCCTTACTTAAGAGGGAGTCCTTTCTCT
TTAAGAACAGTTCCTCAACTGGACTATAGGTAGTCGGGATAGAACGAAAGAACTGCAACTAATCC
ACTCACAGACGAACTATAAGGACCAACATTTCCTTTTTCTTTTCAATGATTTATTTGATTTTCTT
CCCTGCTTGATTGCAGTTCCACGCGTGGGTCTCTCACTGGACGAG



Found at i:1575238 original size:29 final size:29

Alignment explanation


    Indices: 1575196--1575253  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

    1575186 AGGCACCTTC

                                         
    1575196 TGAGAGGGGATAGTTTTCATATCTCTAAG
          1 TGAGAGGGGATAGTTTTCATATCTCTAAG

                                         
    1575225 TGAGAGGGGATAGTTTTCATATCTCTAAG
          1 TGAGAGGGGATAGTTTTCATATCTCTAAG

    1575254 CCGGAAAAGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34


Consensus pattern (29 bp):   
TGAGAGGGGATAGTTTTCATATCTCTAAG

Left flanking sequence: Indices 1574696 -- 1575195
TCGCTAAATCGACTGTCGGTGAAGCAGAATCCTATTTTCCAGTTGAACGTTTTACCTGTTTGTTA
GCTTTGAAAAGAGCACAAGGTGCGGTTGCTATCATCGAAAGGAGAGACTTTACTTAGATAGGGGC
AGCGGTACCACGCCCATTCCGAAAAGAACTCGAGTTTAGTGAAGGTGAGCTCTTCTTTCCCATTA
TCTTTTCTGAAGTGGAGTAAGGGGTATATTCTATCTATGCCTTTGTTTGAGCCTATTCTGATGAA
TGCCCTTCCGCCTGCGTAGAGGTGCAGTTCCTTTTAGGGGATGTACTTTTTATTGTAGGAGTTGC
AGAAGTCTCTCTTGCTGGCTAGAGAGCAGGTTATCATCAGATTCATGTGGTTTCAGAGGATGTTC
ATCAGACGGCCTTACGCACTGCCGACGGACATTATGACTTCTTAGTCTTGCCCACCCGCAAACTG
TGATCTTCTGTCTTTGATCTGGATTGGGCTACCTAAGGCACCTTC


Right flanking sequence: Indices 1575254 -- 1575753
CCGGAAAAGACAAAACCCCCTCGCCAGTACGAAGGAGTACGAAGGACAGGTTTTTCTAACTAGTT
GAACCGAAGAGAGAGAGAGAGAGACAAGCACTAGTGAAAACTACAATGCCTCTTCAGATGGATAT
GAAATAGTTGTCTTTCCATTTGAGAAGGTATTTGAATAGGACTCTACAGGCACATTCTCCATTCC
CTTACCGGACCCCAATCCCTAGCTTCCGTATCTGAAGATAGGTTCTCTGTAACTCACCTGAAACC
TAGACCTCTACTCGAAAAAGCAGGAAAAGCCTTCAAAACAGCCTGCCTTCGCGTTAAATGTCTCA
GCGACTGCGTCATCAGTTGATAGCAAAGGTTCGGGAAGAGATTATTACTTAAACCCCCTTCCTTC
GGCATATCGATACGGAAAAGTTCTTTCGTCCAACAACCCATTCGCCTAAAGGCTCACCGATAAAC
CCCATTCGCTGCTACGCAGCTCACCTCTAAAGACCCAAAGCCTTT



Found at i:1579169 original size:17 final size:17

Alignment explanation


    Indices: 1579147--1579181  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

    1579137 ACTACAAATG

                             
    1579147 AATTTGCCTTTTATGTT
          1 AATTTGCCTTTTATGTT

                             
    1579164 AATTTGCCTTTTATGTT
          1 AATTTGCCTTTTATGTT

             
    1579181 A
          1 A

    1579182 TGGAAAATGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57


Consensus pattern (17 bp):   
AATTTGCCTTTTATGTT

Left flanking sequence: Indices 1578647 -- 1579146
ACAAACCCCAGTACTAGAAGAAAGCCTTTTATCCGGCCTTGGGGTTTTAGGAATTTCTTAATAAA
ATCCAGATAGTGAAAGCGATAAAGCAGCATCAACTGTCGGTGTCGGAAGGTGAGCAGAGAACGCC
ATAGCTGCTCGAACTCATGGCGTAGGAGAACAGACGCTAAATCCTGTATTTATTCCGGACTTGAG
GAAGAAGCAGCCTCGAGATAGAAAGTTATCATGAAGATAGGTAGAAAGTCATCTAGGGGCTTGTC
TCCTTAGACTGGGAAAAGAAAAGGGAACGAAGAACTAAATTTGTGCAATCGCGCTTTCAAAATCC
TTGCTATGGGACCCCCTACTCTAGTGGTCTTCATACCGAAGAATTTAAAACGGAAGGAAAGATGG
GGCTGGGCATTTGGATGGTACCATGCCATGGACTTAAGATCATTTATGAGATTTCGATGCGAAGA
GGCTCCTTTTGAGGTTCGCAGGACCCGATCCAACAACTACAAATG


Right flanking sequence: Indices 1579182 -- 1579681
TGGAAAATGTCTCTCTTGAAATACGGGAAGTCGAAGCAAAGACTCCCTTTTCTAAGCCAGTCATT
CAGAACAATCATATAAGTGATTAAAGTGGATGAAAGAGCTCCGCAGAAAAGAGGACGCAACATAG
TCTCCATCATTGGCTTTTCTAGATCCGAAAGAAGATGGCGATTAGCTATTCATACCCTATAGATA
GATAGAGAAAGAAGAAAAAGACTCAAACCATACTCTACACTTCAGCCCTACACTCCACTGCCTAG
ATAGCTCAATAGGAAGTACCTGTAGCGAATAGGCTCAAAGGCGGATTGGATCAGAGAGAAAGATC
ACTTCGAAAGCTGCATCGCTTGAAAACCTGTCTAAGGTAAGGAATGTTCTACGGTTTCTTTCTTA
ATTCGATGATTTCGTTCTATCTATGAGAAAAGACGGGAAAACGTAAACAACTCAATCTCGAATTC
ACTGATTGACTAGACACCTTTGCATCTGCTCAAGTTGATGGAATC



Found at i:1580164 original size:24 final size:24

Alignment explanation


    Indices: 1580132--1580179  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1580122 ATGATACCTT

                                    
    1580132 AGATATGATTTAATTAGGTTTTTG
          1 AGATATGATTTAATTAGGTTTTTG

                                    
    1580156 AGATATGATTTAATTAGGTTTTTG
          1 AGATATGATTTAATTAGGTTTTTG

    1580180 TCACAGGAAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50


Consensus pattern (24 bp):   
AGATATGATTTAATTAGGTTTTTG

Left flanking sequence: Indices 1579632 -- 1580131
AATTCACTGATTGACTAGACACCTTTGCATCTGCTCAAGTTGATGGAATCACAGTCCTTAACTAA
ACCCGAGGTTGAAAAAGCAGCTTTATCAGAGTTTTATTCATCTCTTTCATCCCCTTGGGAACTAT
CGAGATTCCCAGATTCAACTCATTCTTAGACGACGGAAGAGAAGTCAGGTAACTCAGCATCTAGT
TCAGCATAAGGCGAAGAAGCAACTGTCTTCCTCGAGTGCAAAGAGGCGGTAATTCAATTAATTAC
ATAAAGAAGCAGCCATCCCTCATCCAAGTCATGATCCGCTTCGTGCCTTATCTCTTTCTCACATT
CCTGAACTTCACTCCCAGTCTAGGAAGCGCTAAGGTATTGATTTCCCAGACCTTGAATAATCTGG
TTTTTCTGGAATAGGACTCACTCGGAAGAAAGACAAAGAAACCTTATCTAAGAAAGTCAAAATCA
GAGTTTGATCCCACGAAAACAATCGAAGATAACCTATGATACCTT


Right flanking sequence: Indices 1580180 -- 1580679
TCACAGGAACTTTGGCCATAGAATGAGTTATTGCCCCGACCCTTACTGCCCAACCTGAGATTTAC
CCTCTACTGGGAGAAGAGATAGCCCCTTCGTTTAAGCGTTTAAAAGCACCTTATGTGGAGGTTGC
TAAGCCTGACTAAGCCCTTAATTCCCTCTTGTCAGAAGAGCTCTATCCCCTTTATCTTCCTTGTT
CGAGGATCTATCTCTGTATTTTCCTTTGCTTATGGATTCGTAGGCACATGAATCTGATCTGCGTA
AATCTGGCACTTATGACATCTTCTGACATATTTGATGCAATCAATTTCCAATGTCAACCAATAGT
AACCTGCTCTCATAATCTGCCTTGCCATTTTATGCCCACTGACATGACTCCCACATGATCCCTCA
TGCACTTCTTCCATAATCTTTCTCGCCTACGCTGAGCACACACATCTGAGCAATGTTTGGTCACG
ACTTTTCTTAAAGTGTCACCTTCTAGGAGATAACCGATCGCCATT



Found at i:1595493 original size:17 final size:17

Alignment explanation


    Indices: 1595471--1595505  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

    1595461 AGTTATCTTA

                             
    1595471 CAGCAGTCTCTCAAAAG
          1 CAGCAGTCTCTCAAAAG

                             
    1595488 CAGCAGTCTCTCAAAAG
          1 CAGCAGTCTCTCAAAAG

             
    1595505 C
          1 C

    1595506 CAGTTCCTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.34, C:0.31, G:0.17, T:0.17


Consensus pattern (17 bp):   
CAGCAGTCTCTCAAAAG

Left flanking sequence: Indices 1594971 -- 1595470
CAAGGCAGAAGAGGACTCAAGAAGCCATAGGTATTGAAGCAATCCATCAGTCGGGTAAGATTTAG
TATTTCATTCTTTATAAGCTGAGATTTCATATTTAACTCTTGAGAGATCGTGCCATTCTTTCTTG
CTATCCGACCAGCAGCAGAGCTAATCTTTGTAAAAGCACACTGTATTGGCTCAACACCTTTGCGC
CTTTGTCGATCTATTTACTTGGCAATCAATGGATTCGACAAAAGGCTATCTCATCAGCTCACGAA
CCATACACTCTCTTATCCGCGCTTTATTCTATGTTATGGATCTCCTTAGGAAGTTTTAACGAGCC
CTTGATCCTAGCCTTAGGAAGCGAAGTTAGGAAAGAAGGAGATATGGAATAGCCTTTTTTCTAGG
ATGAGAGTAGGCGAGACTATGAACGAAGACCGAATCCCTATGCATTATCGTATCGTATAGAAATG
GAATTGAAGTTCCATCTCCAAGCGAACCAATTGGGAGTTATCTTA


Right flanking sequence: Indices 1595506 -- 1596005
CAGTTCCTTTTCTAATTTCTCAAGGTTAGCTGAAGACCCCTAGTTCCATGCCCTTTGAATGCCAT
TAATTCGGCTCACAAGCTTTCTTTTTTTTGCTAAAATATTCCCGAAGACTTTTTCTTTACACTCT
TTCACTCCTTCTGTCACCGCCATGATAGCATCAGGGAGAGAATGTGGGGACTTCAACCAATTGTC
ATTAAATAATTGATCAAAAACCTCATGGGTTAGCCATGCAGCCCCGAAAGGGAACGGGCGAGCCT
CCTTCTTGTTGTTGATCACATGATTATTCCGAGCACAAAACATAATGGGATTGTGATCCGATACG
AGACGAGGGAGAGTTAGGACTGGCCCTTCAGGAAAAGCAAGCATCGCGTGCTCATTCCACAACAA
TCTATCTAGTCTTTTTACTGTATAAGAACCTTAGCATGAACCTTACGAAGCCAGGTAAAGAGGTC
TCCAGAACAACCAGGGTGAGAGAGGTTAGAGAAAGTGAATCTCTC



Found at i:1595509 original size:15 final size:16

Alignment explanation


    Indices: 1595474--1595509  Score: 56
    Period size: 17  Copynumber: 2.2  Consensus size: 16

    1595464 TATCTTACAG

                            
    1595474 CAGTCTCTCAAAAGCA
          1 CAGTCTCTCAAAAGCA

                             
    1595490 GCAGTCTCTCAAAAGC-
          1 -CAGTCTCTCAAAAGCA

                
    1595506 CAGT
          1 CAGT

    1595510 TCCTTTTCTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    4  0.21
  17   15  0.79

ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19


Consensus pattern (16 bp):   
CAGTCTCTCAAAAGCA

Left flanking sequence: Indices 1594974 -- 1595473
GGCAGAAGAGGACTCAAGAAGCCATAGGTATTGAAGCAATCCATCAGTCGGGTAAGATTTAGTAT
TTCATTCTTTATAAGCTGAGATTTCATATTTAACTCTTGAGAGATCGTGCCATTCTTTCTTGCTA
TCCGACCAGCAGCAGAGCTAATCTTTGTAAAAGCACACTGTATTGGCTCAACACCTTTGCGCCTT
TGTCGATCTATTTACTTGGCAATCAATGGATTCGACAAAAGGCTATCTCATCAGCTCACGAACCA
TACACTCTCTTATCCGCGCTTTATTCTATGTTATGGATCTCCTTAGGAAGTTTTAACGAGCCCTT
GATCCTAGCCTTAGGAAGCGAAGTTAGGAAAGAAGGAGATATGGAATAGCCTTTTTTCTAGGATG
AGAGTAGGCGAGACTATGAACGAAGACCGAATCCCTATGCATTATCGTATCGTATAGAAATGGAA
TTGAAGTTCCATCTCCAAGCGAACCAATTGGGAGTTATCTTACAG


Right flanking sequence: Indices 1595510 -- 1596009
TCCTTTTCTAATTTCTCAAGGTTAGCTGAAGACCCCTAGTTCCATGCCCTTTGAATGCCATTAAT
TCGGCTCACAAGCTTTCTTTTTTTTGCTAAAATATTCCCGAAGACTTTTTCTTTACACTCTTTCA
CTCCTTCTGTCACCGCCATGATAGCATCAGGGAGAGAATGTGGGGACTTCAACCAATTGTCATTA
AATAATTGATCAAAAACCTCATGGGTTAGCCATGCAGCCCCGAAAGGGAACGGGCGAGCCTCCTT
CTTGTTGTTGATCACATGATTATTCCGAGCACAAAACATAATGGGATTGTGATCCGATACGAGAC
GAGGGAGAGTTAGGACTGGCCCTTCAGGAAAAGCAAGCATCGCGTGCTCATTCCACAACAATCTA
TCTAGTCTTTTTACTGTATAAGAACCTTAGCATGAACCTTACGAAGCCAGGTAAAGAGGTCTCCA
GAACAACCAGGGTGAGAGAGGTTAGAGAAAGTGAATCTCTCCCGG



Found at i:1608690 original size:22 final size:22

Alignment explanation


    Indices: 1608662--1608705  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1608652 GCTAGCATAT

                                  
    1608662 GAGAGGGTTTTCTTTTTGATCC
          1 GAGAGGGTTTTCTTTTTGATCC

                                  
    1608684 GAGAGGGTTTTCTTTTTGATCC
          1 GAGAGGGTTTTCTTTTTGATCC

    1608706 CCGGTAAAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.14, C:0.14, G:0.27, T:0.45


Consensus pattern (22 bp):   
GAGAGGGTTTTCTTTTTGATCC

Left flanking sequence: Indices 1608162 -- 1608661
GAGCTAGTAGTTCTCCCCAGTGGTATAGCCGGGGGAAAAGACCTCTTACCCTAACCCTCCAACAG
CCCATGAGTTATTCGAAGAACCTGCCCGCGAGCCCACTCTCTCATGCAAATTTCTAAACGTTATC
TCTTCGGTGGGAATTTATTGAACCCGGAGTCATACGCGTCCGAAGCGCATTCATCTTTCTCTTTC
TTGAGAACGGAAGGAAATGCAGATGGTGAGATGAATAAAGAGAGCTCACCTTTAGTCCTGCCTTT
AGAAAGCGTAGGGGCTTACTTGTACCCCCAATCAACTACTCCTTCCCTGCCTGAAGTTGGTTCAT
CATTGATTACGGATGAGGCCTTTGCCTTTGCAGTTTCCTTAACAGCAATAATAGCTAGTAATTGA
TTCGAAGGTGCTTTTAAACTGGCTTCCTTGCTATAACCAACCCGCTTTCCTAAGAAAAGAGAAGA
GGTACTTCATGTTGAAAGTAGGGGATTCTCGTTCAGCTAGCATAT


Right flanking sequence: Indices 1608706 -- 1609205
CCGGTAAAGATAAGAGAAGCCAACTTACACCCCAAGGCCATCAGACAAGATAATGGGAAAGGTTC
TGGAATAGCTCACCTTCCCGAGCAATCGAATGAGCTACGAATATCAACGGCCTCACGGTAAGAGG
CAAGGGACAGGGAAAGGCTTCAAAAGTTGCTAGCCAGGTGATGCGTATTGACTCATTCTATCTCA
ACATTACGAATCTAAAATCGATCAACCAGATTTGAGAACTGGATTCTGTAAGACGTGCGGATTCT
TGAAAAGAAAACAAAAGAAATCTCCTTTATTTTCAATAGCGGACTAGTCTCTGACAAGTTCATTC
TAATCGGGACAATGGTATCTACTTAGTGCTTGGGTAAGACTATATAAAATGACTCGTAACAGAGG
TGGTTACCGTACGGGGCCCTCAAGATAGCTCTTGCTTCTTCGCCAAGATCACTCTTAAAAGACTT
AGCAAATAGGTCATGTGATCGCGCTATCATGTATCTAAGTCAACC



Found at i:1612136 original size:20 final size:20

Alignment explanation


    Indices: 1612111--1612171  Score: 113
    Period size: 20  Copynumber: 3.0  Consensus size: 20

    1612101 TAAGGAAAGG

                                
    1612111 CTAGTCGTGTTCTTATGATT
          1 CTAGTCGTGTTCTTATGATT

                                
    1612131 CTAGTCGTGTTCTTATGATT
          1 CTAGTCGTGTTCTTATGATT

                *               
    1612151 CTAGGCGTGTTCTTATGATT
          1 CTAGTCGTGTTCTTATGATT

             
    1612171 C
          1 C

    1612172 ATGCAAGTTA


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  20   40  1.00

ACGTcount: A:0.15, C:0.16, G:0.21, T:0.48


Consensus pattern (20 bp):   
CTAGTCGTGTTCTTATGATT

Left flanking sequence: Indices 1611611 -- 1612110
GCTTGCTCCTCTGTTACCCGTCCAAACAACAACAAATCATCGGCAAAAGAATAAGTGGGAAAAGC
AAGGCCCATCCTTACCAATCTTCAAAGGTTTCTAGCTTCCAGAATTCACCTGAGTATTAATCAGC
TGCCCCAATCTCTCCATGAAAAGTACAAAGAAATAAGGTCTACAAAGAGCCTGTCGAAGCCCCCT
TCCCGTTTTAAAGCACTCAGATTTTTCCCCATTCAAAAGACCTGACTAGATGTAATGAAGTGCGT
AGAGTCGCAAGCTCAACATAAGAATCTAGCCTTAATGACCTCTAAAGGCTGCCTCTCCGAATCAA
TGAATCAGAATATTCCCTTTACCTGGCTGGGGCAAGAACTCATGCAACTCGATAGCTCGTGTAAG
GCAAGGCATATCTTCCACCAGACCCTTAATCTTCTCTCGGTTTTATTGGACTAGAAGTAGGAAGA
ACCAAACTCGCTAGCTAGACAAGGGGATTAGCTCTTAAGGAAAGG


Right flanking sequence: Indices 1612172 -- 1612671
ATGCAAGTTAGTTTCTAGACAAGTGCCCTTAACAAAACTCAAGGGCGGACAAAATTAGCTTCCTG
CTTCAGACTTCGGCATCCTCGGAATCAGCGAGGTGAGTAGGATTCATAGTTCCCAGTACTAGTCC
AATACCCGATGGAAAGCTAACGATTAACAAGAGTGCTATCACATCATGTGCAATTACTTCCTTCA
AAGCAAGATCAGATCAGGCAATAGCAGCAGTACCAATTCCTGCAAGCTCGGGTGCAGATTCTATA
ATAGCTTATAATAGGATGAATGTAGCTTTTCCTAAGATTGAATTATTCCTTTCGATGAATTTCTT
CTATTGTTTAATTGTGATCATTCAATTAATTAAATTATGGAATTCTATACCAGAGCTGACCTATT
TAAAGACCTATTCTTCTCTAAGCCCTGAAAAAAGATATTACAACAAGGAAGCAATGGTGCATATA
CTGGGAATGGACACCGAGACAGGGAGAGGACGCGTTGACACTTGG



Found at i:1617511 original size:17 final size:17

Alignment explanation


    Indices: 1617489--1617524  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

    1617479 GCTTGCCCAA

                             
    1617489 TACACATACACACCAGT
          1 TACACATACACACCAGT

                             
    1617506 TACACATACACACCAGT
          1 TACACATACACACCAGT

              
    1617523 TA
          1 TA

    1617525 GTAGAGGGAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.42, C:0.33, G:0.06, T:0.19


Consensus pattern (17 bp):   
TACACATACACACCAGT

Left flanking sequence: Indices 1616989 -- 1617488
GACGAAGGCACATGGTGATAGATGCTTAGTTGCTGTCTCCCCCTGCCGCCTTTCCGAATGTCGGC
TTTGATCACTACGCATTTGAGAGTCTTGGTTTAAAAGAGGTCTTGCCCAACTTCCTTTGCGGCTG
GCTTTCGGCCTTCTCCTCATATGGAGGATTCACCTAGTTGGGGTTTTGCTGACTGAGCCTTACTA
GCAATTCAATTACCTTCGGGTTCAGCTGGTTCGCCTAGAGGTTCAGCGGTTATGGGTTTTACTGT
TCGAGCTATCGAATTGTTGGCTAATGCTTTTTTCCTCCTATTCAAATACCCGACAAGATTCATAA
GAGCAAGTCAAGGAAAAGATAGATCCTTAACTTTTGACCCGGGTTGATAGTCGAAAGAACAAAGA
GCCTTTATTAAGTACCGGAAGCAACCTACTCGCCTTACATCCCCTAACGAGAGAGACAACCAATC
CGCTAGCAGAAAAGCAAGTGCTAACAAGAAGAAAGGCTTGCCCAA


Right flanking sequence: Indices 1617525 -- 1618024
GTAGAGGGAAGGTATACTAAGATTATTATATTGGTTTAGTGATTGATGAGCCTAGAAGCTCCGGA
AACTGAACTACGGTTTATTCTGGTTGAGTTGAGGTGTAATCCTTTTTTTTATATATGAGGTAAAG
AAAACAAAACTAACAAAAATTATATGGCTCTAGGTCAGACTAATTCCATGGCATCCGCTGTGAGT
AGCGAAGAAAGACCTGGTGGTGGTGAGTCGAAGATATGTAGACCCAATGATAAATCATCATAATG
TGTAGACATCCAATCAGCACACATGTTGGCTTCTCTGTAGATGTGTTTGATTGAGCATTTACACG
GCCGAGTAAGGAGTTCTCTTATTGCATCCAACAATCTGTTCCTAGGGGCTATGGAGCCTTCACTT
CTTTTTAACTGCATTAGCGCTGTTAGAGAGTCTGTCTCGAGTGCCACCTCTCTATAACCTTTGCT
CCAGCTTAGATGTAAACCATGATATATGCCCCATAATTCTGCCAT



Found at i:1618272 original size:20 final size:20

Alignment explanation


    Indices: 1618247--1618288  Score: 84
    Period size: 20  Copynumber: 2.1  Consensus size: 20

    1618237 AGCATGAGAA

                                
    1618247 AAAATAATAGAAGAACTATT
          1 AAAATAATAGAAGAACTATT

                                
    1618267 AAAATAATAGAAGAACTATT
          1 AAAATAATAGAAGAACTATT

              
    1618287 AA
          1 AA

    1618289 TGGGCCATAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24


Consensus pattern (20 bp):   
AAAATAATAGAAGAACTATT

Left flanking sequence: Indices 1617747 -- 1618246
TCGAAGATATGTAGACCCAATGATAAATCATCATAATGTGTAGACATCCAATCAGCACACATGTT
GGCTTCTCTGTAGATGTGTTTGATTGAGCATTTACACGGCCGAGTAAGGAGTTCTCTTATTGCAT
CCAACAATCTGTTCCTAGGGGCTATGGAGCCTTCACTTCTTTTTAACTGCATTAGCGCTGTTAGA
GAGTCTGTCTCGAGTGCCACCTCTCTATAACCTTTGCTCCAGCTTAGATGTAAACCATGATATAT
GCCCCATAATTCTGCCATCGTAACGGAAGAATAGCCAACACGAAATATAAATCCACTTATCCACT
TACCAGAGCTATCACGAAGTACTCCCCCTGCTGCTCACCTGGATTCCCTCGGGCACTGCCATCAA
CATTTATCTTGACACATGGAGACTTAGGTAATTGCCACCCCACTAAAGTTTCATGCTTCAAACGT
TGTTGCAGAACACAACACACATCAGATGCTTCCTTAGCATGAGAA


Right flanking sequence: Indices 1618289 -- 1618788
TGGGCCATACAAAGCTTGGATCGTGGAGGAGACAATTACGCCAATACCAAGTAAACCATAAAGCA
AACATGAGAATAAATCTCCACCGAATCCACACAAAGAGGTCCTTGCTGCAACAATTCAAAAAAAT
ACAATTGGTTAAGTCCAAAGAGAAAAAATACCCATGTAACAGATCCGGATTTAGTGACAACCAAG
TTGAACGAGCCATAGTACAGTCCCTCAAGGCATGAACTGTTGATTCCTCAATAGCAGAGCAGACA
AAACAGCTTGAGTGTGACAAAATATGTCTTTAATGAAGGAAAGAAGAAGTTGGTAACGCTTCTTG
TAGAATTCGCCAAATCAGCATTTTTATTTTATTTGGGCCAGGGAGGTCCCAAAGCTTTTGCCACG
GTATAGAAGGGGGCGTCTGAGGCTGCACCTGGATACTATAAGCAGATTTAGTTGAAAAGACACCA
TCACTTTCCAGCTTCCAATACCAAGAGTCAGGGATTTCATCATCT



Found at i:1622201 original size:21 final size:21

Alignment explanation


    Indices: 1622175--1622216  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1622165 ACCTATCGAA

                                 
    1622175 AATTAGAAGGACTCGTTCTCT
          1 AATTAGAAGGACTCGTTCTCT

                                 
    1622196 AATTAGAAGGACTCGTTCTCT
          1 AATTAGAAGGACTCGTTCTCT

    1622217 GTAGGTCGAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Consensus pattern (21 bp):   
AATTAGAAGGACTCGTTCTCT

Left flanking sequence: Indices 1621675 -- 1622174
GATTATCCAAGAGAGTCACCCCAGGATTGAAACCTTGAGCCGAAGAAGATAACCAGTCCGCGCAG
CCGTTGCCTTCACGCCAAATGTGCCGAATTACTACATGTTCAAACCCCGCCAATAAGTGAATACA
GTCTGCGATAAGATGACCAAAAACATACCGTCGATCCCTTCCCGACGACTGAAGGAGCGTAACAG
CAAGGTTGGAATCATTCTCCAACTATACCACATTAGCTCTACACACATGGGTTGCATCCACATCA
TACTGTCATGGACTCCCTAATAGTACATCACATGCATCCATCTAAACAATATTACAATAAGTATC
ATCTCCGTACAAGCCGGATACTTTACACCTTTTGTCAACATCTATCTCACCAACAGCTTTAATCT
ATCCTATCCTATTTAGAGGTCACTTTGATCCCTTTCTTTCACTAAATCGGGTAACAACTTTGATT
GAAGTAGGAATCGTACCATTTGGAACTGCTGCCCCACCTATCGAA


Right flanking sequence: Indices 1622217 -- 1622716
GTAGGTCGATCCCCCTTTTTCGCCTCCACCTATCGGTAGAGCCACTTCGTACCTAAGCTAACCTA
TTGATTGGGAGTTATCTTACAGCAGTCAAAAGCCAGTTCCTTAGTGGAATCAGTTGCTTATTTCT
TTTTCTGGGGAATATCATCTGAAGCAGTTTCAACAACCGGTTTTTGGGCTTTATTTTCTTTGGTT
GTGATCGTCACCTCGTAACCAACTAGACCAGAAGAAGGAGATTTCTAGTAATACGAATAGGGAGG
CGAATAGGATAGAAAGCCCACCGAATGAGAGAAGGAAATCGCTGTGTATAGCTCAGTTTGCGACT
CCGTCGATAAGAAATAGACAACAAAACTTTCCTCGCTGACTTCCTTCGATTCCCCACCACTTGTA
CAAGAAATTTCATCTTCTTATTAGCCTGTACTGACCAACTTCTTTCGTCTTATTGCACACTTGGG
AGCATGTTTAGCTTTCTTAACTCTCTCTACATCTACATTACCTTA



Found at i:1626174 original size:13 final size:13

Alignment explanation


    Indices: 1626156--1626181  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

    1626146 ATAATCCTAT

                         
    1626156 CCAGAAATGCGCA
          1 CCAGAAATGCGCA

                         
    1626169 CCAGAAATGCGCA
          1 CCAGAAATGCGCA

    1626182 TTCAATTCGC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.31, G:0.23, T:0.08


Consensus pattern (13 bp):   
CCAGAAATGCGCA

Left flanking sequence: Indices 1625656 -- 1626155
TGGGGATTTAGAGTTGCATAAGGATTGTAGGTTTCACCTGCTCGGATCTGGCTTTGTCGACCCGA
AACAGATGCTAATCCTTTTCTCCTGAGCTTTCGAAAACAGTAGTTTCGTCAAACGTACTATGCTC
TGAACCGTCTACCTGTCCCCTAACCCCTAAGCGGTGGCCTTCATAGAAATCTACTTGCTCTGGCC
TTACTACTCGAGACAGACCGAAGTCAAGTCAAGAGCACAGGCAAGGAAGCGAAACCGATCGTACT
AGAAAATCCCTATTGACGTTTCTATGATCATCTATGTAAATTGAAACTAGGGTTTTTAGTGCTTT
TATTCCTTCTTTTTGAAAACAGCTATAGTACTGATAGTTAAAGCGCTTCTTCCCTGGCCCTTACC
TGAGAATAGCAAGACTGAAGACTGACCCAATCAGCAGCTCTGTTATCTGTTCGATGAACCAATGG
TGTGTGTAACTCTCCAATGCTCCATCTATCGGTCGATAATCCTAT


Right flanking sequence: Indices 1626182 -- 1626681
TTCAATTCGCCATTCTATACAAAAAATACTATGTGTTACCAGTATGTATGTTTACAGTGTCGAGT
ATAACATGGCAGTTTCCTAATGGGTTGGGGATGTCTTCTTGTTTTATTGATGAGTAGGAATAGTT
ATTGGAGTCCTCAAACCCCAGTCTGAAACTAAACCGATTCAATTTATTTTCTTGGTGGTAAGCTT
TTGAGTAGGATTTTTGTTACGAAGCCTATCATTCCTTGTCTTCTGGTTGTGCTTCATCCCCCAGT
CTTGTTAATTGCTGGTATAAGGAAGGGGCATAAGCTAATCCCCGAGATCTTTGCTATTTGTGCGG
GTAACTAAGGCTCTCCCCTTATCTGCCTAGAACCATCTCACAACTCGTGAGCTTCCCCTTGAACA
GCTAGAAAGCTCAAGGAAAGGAATGCCTGCTCGAACGCTATAGAAGAGCAACGATTTATTCCTCT
GCTTGAGCTGGACTAGTACTCGTAAGAAAGACAAAACCTAGAACA



Found at i:1633375 original size:17 final size:17

Alignment explanation


    Indices: 1633353--1633386  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

    1633343 GAAAAGTTGA

                             
    1633353 AAGAGTTGAGTTTAGAC
          1 AAGAGTTGAGTTTAGAC

                             
    1633370 AAGAGTTGAGTTTAGAC
          1 AAGAGTTGAGTTTAGAC

    1633387 CTTGTAGATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29


Consensus pattern (17 bp):   
AAGAGTTGAGTTTAGAC

Left flanking sequence: Indices 1632853 -- 1633352
AAGTCCTGGCACAAGGGAACAACTATGGAGCTATTTGAAAGACAAAAGTGACCAAGGTGACAAAC
CTTGGGTAATTAGGGGGGATTTAAATGCAATCTCTTCAGAGTCCGATAAGTCCAATTTTACTAGT
CGAGATGTAAATAGGTGCAGAAAATTACAGGAGGTTATTTCTTACTGCCAGTTGATTGATTTGGG
GTTTATAGGTCCAAAGTTTACTTGGAGAAGGAAAGGAGAAGGAATCATTACAACTTGGGAGCGGA
TTGATAGGGTCTTATGCAATTCTAATTGGAAATTACAGTTTCCTGAAGCAACAGTTTTCCATCTT
ACAAGAACTAGATCGGATCATTGCCCTCTGCTTCTTGATACTGAAGGTCAGGTAAGACCTACTCC
AGAACTTAAACCATTTCGATTTGAAGCTGCATGGATGAGTCATGAGAATTTTGATGAGTTTCTTG
AAATGAGGTGGGAAGGAAGCCAGAGGCCCATGACTGAAAAGTTGA


Right flanking sequence: Indices 1633387 -- 1633886
CTTGTAGATTGAAATAGATCTGTCTTTGGGAATGTCTTTCGCAAAAAGGAAAAGGCTTACGCGCC
TCAACCCGCTCTAGAGATCGGAAAGGATAGGCTATCGGATGGAGATGGTTCAAAGACGAAGTTTC
TTACACCTGAGTTTATTGGAAAACCTGGGAAATTCGTTACTCAAGCTCTTTCAAGAACCGGTATG
CATGCACCTTTTAAACTATCGCTCGTGAGCAAAGTATGATGATGAGCTCACCCTAAAGCCTTATG
CAACTACAAACCCTCTTTCTCGAGACATAGTAAACCCAAACCGAAACCATAAAGGGCGGACTAAA
GGTCTTTCTTTAAGAGCCTGTCCACTTCAGACAATTGGGATAGGAACGTGACCCACACTTACTCC
CCTTCTCTCGGGACTATAATCGATTCTATCTCTCCGTGCTAAAAGAATTACCAAACTACATACTT
AAAATGTGTATTCGTTGGTTTTTTTATTGGTTCGACTGGGGCTAG



Found at i:1638895 original size:19 final size:19

Alignment explanation


    Indices: 1638871--1638909  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

    1638861 ACAGAAAGAG

                               
    1638871 TCCCTTTCTAGTTTTAGGT
          1 TCCCTTTCTAGTTTTAGGT

                               
    1638890 TCCCTTTCTAGTTTTAGGT
          1 TCCCTTTCTAGTTTTAGGT

             
    1638909 T
          1 T

    1638910 AGGGGAAGAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.10, C:0.21, G:0.15, T:0.54


Consensus pattern (19 bp):   
TCCCTTTCTAGTTTTAGGT

Left flanking sequence: Indices 1638371 -- 1638870
TAAAGCAGCAGCAACTTCGGACTAAATGCAACCTTAAATCAACTACGCAGATCAGGATCCGGGAA
CATCTCCTTTCTTTCCTCCTCTGAAGAGAAGGTAGGAATGTCAAGTCATAAATTCCCGTAGAATC
CTATTGAGATTGTGTTAGCAGCCCTACCAGTTACGAAAGCGGGATTGAACTCAAAGTCCGAAGCA
GGAGATCTTGACGCCCAAACTGAAATAGATATAGATCCGCAACTGTCTCCCTCATCATCCCTCGG
GGTGTATGCTTCTCTATCCGCTACTCAATCGACAGGCATGAAGATGTATCTGTGATCACTTATGC
AATTCGGGAAATCATCACTTCTGGGTTTTTCCAGTAGTTTCTAACCCTAAGCTCAATCCTTTAGA
AACCTTGGGGTTGTTTCAGGATCTCTGTCTTGCTTGCTAGCTACCGAATCGCCTTTAGCTCCTCC
TCCTCAAAAAGGAATGAAATGCAAATGTCGTTAGAACAGAAAGAG


Right flanking sequence: Indices 1638910 -- 1639409
AGGGGAAGAGCGCATAAGAGCTCTCCCTTGAGTGTGATCTTTCGGTATGTTCATTAAGCAGTCGA
CGTAAATCGATTAGCGAAGGAGTAATCCAAACCAACCACCTCTCAGGAAAAAGTAATCTCTTGAA
TGACCCCAAGCCAAATCCTACTCGTCTTATAAGAAGTAGGCTCTGCCTGCAAGACCTAAACGATA
TGCCGTAGATAAAGCAATCTCCTCAGCAATCTCTTCCCTTCACTTGGAAAGACCGGCTCGGCATC
TAGCTCAGTAGAAGCGATAGAGTACGAAGACGAAAGATTAGAAAGGAGGTCCATAAGTCAGGCGA
ATGAGGGCGGATGCTAATAAGCCGTAAAGCTCAGAGTCTGATTGGAAAGGAAAAGTCTTGAGTAC
AGAGGCTGATGAGGTGATTATTGACGATAGTTGGCCAGGGACTAGAATTCTTGTTCCATTTGCAG
AAGTGCGAATTCTAATTGCGTACAATGAGAAAGATCAATCAGGTA



Found at i:1649651 original size:18 final size:18

Alignment explanation


    Indices: 1649628--1649681  Score: 108
    Period size: 18  Copynumber: 3.0  Consensus size: 18

    1649618 GGGGTTCAGG

                              
    1649628 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

                              
    1649646 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

                              
    1649664 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

    1649682 CTTGCCTGAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44


Consensus pattern (18 bp):   
ATCTATGTCTTCCATTGA

Left flanking sequence: Indices 1649128 -- 1649627
TTTTACAATCGAAAGGTAAGGGGATCAAGTTCGTCGTTAGACAGTTCGCCTATTTCGTCAACTAA
TGAGAAAGAATTTCGCAATCCCTTATCGAAACACTATAAATAATATACCCCTCGACTTAACTATT
GCACCGACTTCGTACTCTGAGCCTTACTCAACTCAACGTTCTCTTCTTCACTCTTCTTACGGCTT
AACAGCCTTCCCTTCCTCTCAAGCTGATCTACTAAGGTAAGGATGAGGGATGGTTAGTGCCCAGG
ATCGATCAGCAACGTTCACAGTTCGGGAAGTAGTGGATTTTGATTCCCCACTGAGAAAGACTGAT
ACTTATGAAAGCTTATGCCAGGTCAGCTACCATAAATAACTCTCGCCCTTATATCGAAGCCTAAA
GAGTTAGTTTCGGTTTGCATAGGTGATCGCAGAACGGTCCAGTAGGCCTTTCAATTGATAGTTGA
TCCCGGAAATAAAGTTAATGCGAGGGAGGTGTATTGGGGTTCAGG


Right flanking sequence: Indices 1649682 -- 1650181
CTTGCCTGAAGAAGTCTCTCTTGCAGCCGTAGTAGCAAAAGAAAAGGTATTGAATCAAGGATAAC
TTAACTCGGAATCTCATCCTCAGATAATGCCATTTACATGAACACAAGTAAACCGTAAACCCGAG
GAGTTAAACCGATAAAACAGCATCAACTGTCCGAAGGGGAACCGAACTGGCGAATAAATGCCATA
CAAGAAGAACTGATTTTTGGTATAAACAAAGGCGTATAGCCAGATGGAAAGCGGAGCTAGATAAA
GTAAATCGACTCGCTGCCTATTTTCACGGGAAAACGCGAGGTAAATCTTATAAACAGCTACTTCG
GAGCTTAACATCGAAGCTCGGTGACGACAGATTCTCAAAAGGTAAAGCAGAGCCCTTTCTTTCTG
ATTAAACTACTGGAAAGCTTCTCAGAATCAGCTCTCGAAGGTGAGGTTGAAGCTTTAACAGACCT
AGCAGAAGCACCAATGAAAGCTGGGCTATTAGCGTATATGGAAGA



Found at i:1669038 original size:19 final size:19

Alignment explanation


    Indices: 1669014--1669051  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

    1669004 CGGGGGCGGC

                               
    1669014 ATCTAAGGATCATGTTGTT
          1 ATCTAAGGATCATGTTGTT

                               
    1669033 ATCTAAGGATCATGTTGTT
          1 ATCTAAGGATCATGTTGTT

    1669052 GAGGATCCTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42


Consensus pattern (19 bp):   
ATCTAAGGATCATGTTGTT

Left flanking sequence: Indices 1668514 -- 1669013
CCTTTGGAATATTACCCTCCTATGGCTTTGAAGAGGATTGCAGCTACTGTTGTAAGGGTCATACG
TTTGGATAAGACTACGTAGTCTGTAGAGCGGGGTGGGTTTGCGAGAGTCTGTGTGTAACTCGATT
TGTCTGCTCCATTGAAACCTCTTGTTCATATTGGGAAGATGATTCAGAAGGTTGAATACGAGGGC
TTGCACATGATCTGCTTTGGTTGTGGCCAATTTGGGCATAGACGGGATGCGTGTTCCATGATTGA
TACCAGGAAACCGACGGATGTCGATTGTGCCGAGCCTCACGAGTCGGCGAAAGAACAGTCACAGG
TCGTGGAGGATCCTTTGAAGCCGGAATTTGGGCCGTGGATCATCGTTCAAAGGAAGACTCGCCGG
CCGGCGAAGGAAGCGGTTGACAAAGTAAAGTCCAAAACTGATCCTAATCAATCCCATGATTTTCG
GAATCGGTTTCAATCTCTTAGAGGGGTCAAGGATTCGGGGGCGGC


Right flanking sequence: Indices 1669052 -- 1669551
GAGGATCCTAAGGCGAAATCTATGGAGCCGATCATGGAGAAAAATTCGAAGATACAGAGTGGAAA
GAATGGTAACTTACGGAGTGTATGGAAGCCGAAGAAAGATAATGGTGTTAAGATAAATAATAAAT
CGGTGAAGGGAGCAGTTAAGGCGAAGAATAAGGAGTCTACCCCTCATTCAAACTCTCGGGCTGAT
TTGCCTTTGCCCTACTCCATTTTTTAGTCCAATAAGGTTATTGGGCCTCCTACAGGCTTTTCATT
TAAAGCTGGGTCACCATTGAATATTTCTTTTGATCCTATTTGACTGGAGGAGCTTATTGGGTCAA
GCCATTTTGGGCTTCCTCACTTAATGGAGACGCAGGATACTACTGGTTTAGGGAAGAATTTGGTG
GATGGTGGTTTGTCGAAGGTAACTGCGGTTTCTTCAGGCGAAGCAGACATGTCTTTACCCTCTGA
CGCCATCTCCCTTCCCCCGCAGCAACCCCCTTCGACGGTTACAGA



Found at i:1670067 original size:29 final size:29

Alignment explanation


    Indices: 1670025--1670080  Score: 112
    Period size: 29  Copynumber: 1.9  Consensus size: 29

    1670015 CGAAGTTAGA

                                         
    1670025 ACTAAGAAGAATTCTTTGGGCTTATATGG
          1 ACTAAGAAGAATTCTTTGGGCTTATATGG

                                       
    1670054 ACTAAGAAGAATTCTTTGGGCTTATAT
          1 ACTAAGAAGAATTCTTTGGGCTTATAT

    1670081 AGAGAGTCTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36


Consensus pattern (29 bp):   
ACTAAGAAGAATTCTTTGGGCTTATATGG

Left flanking sequence: Indices 1669525 -- 1670024
GCAGCAACCCCCTTCGACGGTTACAGAAAAATTGGATTCCGAGTTAACCTCAGTTAATGGTGATG
CCGTTGAGGATTCAGCTATGTGTGATATTATTCAGAATGCTTCGTCCATGGATGGTGCTCAATCT
AAGGAGCCTGAAAACTTAGATGATAATTCCCTTTCTGATGGATTACATCCTATGGAAGAGTAGAG
GTGCGGGCAAGAAAGAATTTTTAAGCACGGGAGTTGATTGCAGTGTATAGACCTTCGATTCTTGA
TATAGTTGAACCTCGGATCTCTGGTTCAAGAGCGGAGCGTGTAATCCGCAAGTTAAAATTTCCTA
AATGGCATGTGGCTGAACCGGTAGGCTATGCTGGGGGTATTTGGTTAGCTTGGGATGATGCAATC
TTGCAAGTGACGGTGATTCTCTCTTCTCCGCAGCTTCTCCATGTTCAAGTTAAACCAAAAGATGC
TACAGAATTTTTTATGACAGTAGTTTATGCTAGTCCGAAGTTAGA


Right flanking sequence: Indices 1670081 -- 1670580
AGAGAGTCTTGCTCAGTCTATAAATGCTCCTTGGATGGTATTGGGTGATTTTAACGATGTTACAG
GAGCAGGGGAGAAGATGGGTGGCGCTTCTCCTTTTTTTTCTAGATGCAATTTGTTTAATAATATG
ATTTATGCTTGTGGTTTGATGGATTTGGCTTTCTATGGTCCTGCTTTTATCTGGTGTAACCGGAG
GAAGGGGTTGAGGAAGGTCCAAGAACGTCTTGATCGGGTTTTAGCTGATCCGAATTGGAGACTTC
TTTATCCTGAAGCTGCTCTTATTCATCTACCTCGGGTTCATTCAGATCATTGTCCTATTTTATTG
AAACTGGAACCTGGTCTTTATGCGGATAGAAGTAAGCGGCCTTTTCGCTTCCAAGCTATGTGGCT
TTCGGAGCATGGTTTTGATGATATGATGGGTAAACTTTTTCATGATCTTGATGGGACTTTTGTTG
AAAAGGAAGAGAAATTGGCCTTGGCTTTGTTGGAGTGGAATAAGT



Found at i:1673701 original size:29 final size:29

Alignment explanation


    Indices: 1673659--1673716  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

    1673649 CTTTGTACGT

                                         
    1673659 AATTATAGAGATTGACTACACACTGATTA
          1 AATTATAGAGATTGACTACACACTGATTA

                                         
    1673688 AATTATAGAGATTGACTACACACTGATTA
          1 AATTATAGAGATTGACTACACACTGATTA

    1673717 GGCTATTTCC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31


Consensus pattern (29 bp):   
AATTATAGAGATTGACTACACACTGATTA

Left flanking sequence: Indices 1673159 -- 1673658
GAGCGTTGTTGATGGACATCAAGGAGATGTTGAGTTGGGAGTGGCAATGTCGTTGCCAACATACT
CTACGTGAGGGGAATTTTTGTGCTGATAAACTCTCAAAGATGGGTTGCGACCTGGATGCTGACTT
TGAAGTTTACCATCCTCCTCCTACATCAGTTATGGATGCGTATCAGGCAGATAGTCGGGGTCTTG
CTTTCCCACGGGGTTTTAATTTGAGCTAGTCTTTATCTTTCTTTGTTACACCAACAAAAAAAAAT
GGTTTCGACCGTCCTCTTTGGTTCTTTAGTAACCGTCGCCTATCTCTTTCTTCTCGTGAGTTGAC
GTACTTGATCAATTAGTAGTTCAACCGGATCGAAGGAAAGGGGCAACAAAGCAAGTCAGATTGTA
AAGAACTTCCTCAACCATTCAACAATCTCACATACAAGCTCATGTACCGTCCTTAAGCGGGGGAG
TCTAACGATATCATTCTCATTATTAAAAATATATTCTTTGTACGT


Right flanking sequence: Indices 1673717 -- 1674216
GGCTATTTCCTAATATAGGATAGATATTGCATTATTTTCTCCTTGATTCTGGAAACTAATTTATA
GCAATGCTTGTATATATTCATTATAAAATCAATGAAAAGAATCATCTTACCCACTATCTTGCACC
TTTGATGTTCAGCCTTCTTAAGTTGTTGACAGACTATAAACATCGAGAGATGTACTCGACGATTT
CTCGCTTCATTCCTGGACACCAATAATTTGATCGGTATAGTACGGTACATCTTCGTACTCCCAGT
ATAGCAAGCATATGAGCGGAGAGCTAATCCCTTGTCTAGCAATCTTGTCTAGCCTAGCCTTTCTC
GCAAGCTAAAGGAAATGGTAAAGCTATGCCCGCAGCTACTCCTAACAGAGAAAGCAAACTCAAAA
GCGAAGAGAGATCCAACCCCTAGTGAAAACTACACCGTTGGTATCGCTTTCAGCTTCCTATTAGC
CTTTCGTGTAAGGTAGACAAGACTAAGGACTACTCTAACTCTTTT



Found at i:1676130 original size:18 final size:18

Alignment explanation


    Indices: 1676107--1676142  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

    1676097 CTAGCAAGCC

                              
    1676107 TTCCTGTTAAAACGTACT
          1 TTCCTGTTAAAACGTACT

                              
    1676125 TTCCTGTTAAAACGTACT
          1 TTCCTGTTAAAACGTACT

    1676143 ATTGTAACAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39


Consensus pattern (18 bp):   
TTCCTGTTAAAACGTACT

Left flanking sequence: Indices 1675607 -- 1676106
ACTGCCTTTATTAAGAAAGAAGTGGGGCACTCCTACTGATACTGGAATGTAACTTGCTATATCTG
CTTGGATCATATTCTCACTGGCTTAGAAAGAGGGAGATATGGAAGACTAAAGTATGCTGGTTGCG
GAGGTTTTCTCAGCTCTTTCATACTGTTCGCTGCTACGCTTAGCTCTTCTTCGTTGCTAACTGCT
ATACTCAGTATACCCAGTAAAGCTGTTCGCCTACTACGGATACTTTTTCCATCTCCGAGCTATAA
GGCTTCAGCTTGTTCGCTTAGCAGCTACTATTTATTTAACTTCCTCTTCTCCTAAAGGCTCACCC
CTATTGTTAGGTTGCTACCCGATTGAGAATTAGCTAGGAGGCGGCCCTACATGATAGAAATGTGT
CGGGCCTAAATCAACCAGCGAAGCAAAAAGGGATATAAAGTGCTTGCTCTCAGGGAATACCGACG
AATATGAATGTCGCGTAAGCAGTAGTGCTGGGCGGCTAGCAAGCC


Right flanking sequence: Indices 1676143 -- 1676642
ATTGTAACATCTGCTGATGTACTTCATAGTTGTGCTGTACCTTTCTTACAAGATATGGAGACGCG
GCTTATACAGGCTGCGGGTAAAAAAGAAGTGGGGAAAGCCCTTTCTTTTGAACCGTGGAATCGAC
CATAAGAACCTGGTGATAGGTGTAAGAACGGTTCTTGGGCTCTTCTTTCAGAAGCTAGGATTGGA
AGGCCTTTCCTAATTTGTAGAAATTCCTCTCTGTTTTCAAGTTATCCTTTATTTGTATTGAGTAA
AGTGACTACTCGCCTATGCTTTCTTTGTGGGTGCATCCCTAGCGAAATTCCCCTAGTCTCGGTCT
TTTTATCCTTTTAGTGTGTTCGTGTATTACTTGTACAGCTTTTCAGTGATGACAATTAGAAAGGG
TCTTTTCTTATGTTATTCTTTCTAGCTCTACCCGCGTGGAAACCCCAGTAGCCTACCTACCCTCT
TATTAGCTTGAAGATTTAATTAGCTTGAAGATTTAAAGTTCTTGT



Found at i:1676621 original size:17 final size:17

Alignment explanation


    Indices: 1676599--1676633  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

    1676589 CTACCCTCTT

                             
    1676599 ATTAGCTTGAAGATTTA
          1 ATTAGCTTGAAGATTTA

                             
    1676616 ATTAGCTTGAAGATTTA
          1 ATTAGCTTGAAGATTTA

             
    1676633 A
          1 A

    1676634 AGTTCTTGTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40


Consensus pattern (17 bp):   
ATTAGCTTGAAGATTTA

Left flanking sequence: Indices 1676099 -- 1676598
AGCAAGCCTTCCTGTTAAAACGTACTTTCCTGTTAAAACGTACTATTGTAACATCTGCTGATGTA
CTTCATAGTTGTGCTGTACCTTTCTTACAAGATATGGAGACGCGGCTTATACAGGCTGCGGGTAA
AAAAGAAGTGGGGAAAGCCCTTTCTTTTGAACCGTGGAATCGACCATAAGAACCTGGTGATAGGT
GTAAGAACGGTTCTTGGGCTCTTCTTTCAGAAGCTAGGATTGGAAGGCCTTTCCTAATTTGTAGA
AATTCCTCTCTGTTTTCAAGTTATCCTTTATTTGTATTGAGTAAAGTGACTACTCGCCTATGCTT
TCTTTGTGGGTGCATCCCTAGCGAAATTCCCCTAGTCTCGGTCTTTTTATCCTTTTAGTGTGTTC
GTGTATTACTTGTACAGCTTTTCAGTGATGACAATTAGAAAGGGTCTTTTCTTATGTTATTCTTT
CTAGCTCTACCCGCGTGGAAACCCCAGTAGCCTACCTACCCTCTT


Right flanking sequence: Indices 1676634 -- 1677133
AGTTCTTGTCGGGACATCTATTTGAAAGCTATTCCTTCCCTACTATGATCCTTCCAACCTTTGAA
CAACGTTCACTGCGCCCCTTTCACTTTCCCTGGCTGAGTCAAGGGGGATGCTTTCTATCCTTCAT
TTTATGATTGACCGGTTCGGCGGGTCTGCACAGGACAAAAGGACCTCCCAACCTCCAACTAAGAC
TTTGACTAGATGGCGTATACCCGTACCGAGTACTTCTCTGTACTTCTCTAAGTAGGATAACTGGC
AGAGTTTTCTCCTAAGATCAACCTATAAAGTAGACTTTTAAAGCACGCTGGTTCGACGCGTAGGG
ATTAGGATTCCTTCGGTGCCGGCGTCCTCTTTCGCAATCGAGTAAGAAAGAACTCTTTCCATTAA
GGAAGGCTAGGTTAGAATGAAGTTCAGTTTCATTTGTGTAGTGAGGTATGGGAACTCTTTCATGC
CCTATCAAGATCAAGACAGAGAACGAAATGAATCAACGATCGAGA



Found at i:1680837 original size:15 final size:15

Alignment explanation


    Indices: 1680817--1680847  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

    1680807 TTATCTGAGA

                           
    1680817 AATCCTATTTTTAAT
          1 AATCCTATTTTTAAT

                           
    1680832 AATCCTATTTTTAAT
          1 AATCCTATTTTTAAT

             
    1680847 A
          1 A

    1680848 GGGGATCTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52


Consensus pattern (15 bp):   
AATCCTATTTTTAAT

Left flanking sequence: Indices 1680317 -- 1680816
GGAGTTCCAATCGGGCCTTGAGCCAAGGAAGGGCGCCCAGTTCGGAGCCTGGTCGCAGTTTTGTG
CCGCTCGAGAAAGCGAATTAGTATCGGACTACCTTTGTCTTTTTGGGTTGTTAGTTGCTCGGTGA
ACAAAGTAGCTTCACTTTGTATCGGCGAAGATTGATCTTCTATTTCTTTTCGAAGTCTGATCTCT
TGAATAGGCATCTCGGTCGAAAGACTCCTCTTTCAACGTCTACTCAGTTTGCTATCCTTTTCGGG
ATCGGACTATCTAAGCACTATATATAAACTGAATAGGGGAGCCCCTTATTCCATCCCATAAAAGT
GCAGAATTCTCTTTCTCTTTCAAATACAAGGTTTTGCGGATAGGCGATCGACCTGATTGGTGAGA
TCCATACACCACAAGAACCATGTCTTTCTTTTTGAATGGCACACCCGGCAACAATCAAAGAACTA
AAAAGCTTCCCGGGCAAGCTTGTCTTATATCCATCTTATCTGAGA


Right flanking sequence: Indices 1680848 -- 1681347
GGGGATCTTAGATCATTGGATATTGAGCGCTACAATGTACTCCTCCATAAGTAAGAGCATACACA
CACCTCAGTCAGAGTCCAGATCCAATCCTGGATAGATAAAGAGGGAGCAAGGACGATAGAGCAGC
ATACCTCCTGTCTGATATCTTCACTGGCCCTAGCATTCGAAGTAGAGAGCGGGAAGGCGTCTTTT
ATCAGGCCGGGCAGCAAAGACCGGCCGGGGAACTGGCTCACTAGCAAGCAGCATTGATGGAACCT
ATTCTCTATTATAAGTAGAGCCGCCCCTATACAACTAGTCTCACCGTGAACGCCACTTCGCCTAA
AGGCTCCGCTCTAAACGACCCTCTCCTTTTAGTCGAGCCTCTTCGCCCCTCTCCCTCTCGTTCTT
CCTCATTCCTCTCAAAGTCATAGGAGCTCGCTGCGAGACTCTTTCGATTACTAAAGTCACCTGTC
TTGTCCTTCTTTGCTATTAGTTGAAATCTCTGCTGACTGATCCAT



Found at i:1685399 original size:19 final size:19

Alignment explanation


    Indices: 1685377--1685415  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

    1685367 GGACTAGAAG

                               
    1685377 AAAGGAAATAGCCAATTGC
          1 AAAGGAAATAGCCAATTGC

                               
    1685396 AAAGGAAATAGCCAATTGC
          1 AAAGGAAATAGCCAATTGC

             
    1685415 A
          1 A

    1685416 GGGTAAGGGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.49, C:0.15, G:0.21, T:0.15


Consensus pattern (19 bp):   
AAAGGAAATAGCCAATTGC

Left flanking sequence: Indices 1684877 -- 1685376
GGAAAACTCATTCTCTTATCGAAAGGTAAGCGCGCTCTTCACCTTCCTATGCTCCTTCCTTCTCC
TGCTGATTCATAGGATTGATCCGAGGTGGAATGCCTGTCTGACTCATGATTGAATGACTGAGCTA
TGCCTAGCTACTAGCACAGACGATTAAAGAGTTCACCCGGCATTGGGTCAAGCAAGTATGGGCAT
TGTAACAAAAGAAACTGAATCTATTGCTTCCCTACCGGACTACTAGCCTCACTTTCTTATACGCC
CTAGACATCTCATATTCAGATAGAGATTATCTAGCTTTGAGGTTATATAGCTTTAGTCCAATTCT
AATCTAACAACAGATTCAACTACTTTCCTTTCGCTTACTTTCATTCCATGCCTTACCTTTCCTTT
AGACCCTTTTTGAGTCGTTCAGTAGCAGCTTAGCCTAGAAGCAAGAACCTTAACAACCTCGAGAA
CTGAACCCGAAAAGAAAACAAGAAGAAAAGCTATCGGACTAGAAG


Right flanking sequence: Indices 1685416 -- 1685915
GGGTAAGGGGTTACGGTAATTCACCCGTCTTTAGTCAATCGGACTACTTTCTGATGGCTGGGGCA
TGAGGCTCATTATGGATTGATCCTCCTGGTCTTACCCAGAGTCACTAAGATAAGAAAACAAGTCA
AGACGAAACCCCGTCCTTAACTTTACGAATAGAAAGGAGTTAGCTCAAAAGCTAAACTAAACAAG
GCTCAGAATTCGATGTTTATTCTGACGTGTGGCTCCCCTATGGGGTATATTCTCTCACCTTGCAT
GAGAGAGTGGGCTCGCGGTATGCAGCCTTTGCCGAAGAGCTCCCCCCTTTATACATATCCCCAGT
GAAGATCCTTCCTGCGAGTTCTTATTCGCTAGAACATTTTACTCAAGTGCTGCCCAAGAACAACC
AATCTTCCAACCCAGATTATGAAACTAGAAAGTCAGCTACTATTGCCGTTAGAGTAGATTTGACT
CTTTCGGTTGGTCTTTACTATGGGGCTTTCTTTCATACTAGACCT



Found at i:1686686 original size:23 final size:23

Alignment explanation


    Indices: 1686656--1686701  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1686646 CAAGGACCGG

                                   
    1686656 TATGAAGAACCAGTAGCTCAATC
          1 TATGAAGAACCAGTAGCTCAATC

                                   
    1686679 TATGAAGAACCAGTAGCTCAATC
          1 TATGAAGAACCAGTAGCTCAATC

    1686702 AATAGACTCG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22


Consensus pattern (23 bp):   
TATGAAGAACCAGTAGCTCAATC

Left flanking sequence: Indices 1686156 -- 1686655
GACCTTCCTCGTGCCTTTACTCCAGACGCCTTTGCTTCCTCCTCTTGAATCCCCGTTGAGCCTCT
TCTCCTTACTAGACGATTTCGATTCTTCTAGCTAGCTCTGACTTTTCTAGCTTTCCCAGTCGCTT
CGTCATTCCATATTCAATTCCCCGACAAGTTTAAGTATCTTTCCTTATGTGAAGGCTCTTCAAGA
CCAGTGATATACCCAAAAGGAGAAGATGCTAAGGAGCGTAAGTAGCCCAGAACAGGAGAGGAAAT
CTCGAAAGTCTAACCCGAAGCAATTCTAAGGCAAAAGTTGCAAGAGGGAATCCCACGAAAACACG
AGCAGATGCACGAAGCTGCAAATCCTTTTCGGAAGTTTTTCCGCAAACAAAGCATACCGTAGAAT
CCGTTTTCATGTTTTAGCGGAACCCTGCAACAGCGCCTAAGAGCTCTTTCCTTTCTTCTTTCACT
GCAACTGCAAAACTAGATTAAATAGAGGGTGATTTCAAGGACCGG


Right flanking sequence: Indices 1686702 -- 1687201
AATAGACTCGCTTTAGAGCATCGCTTTAGAGTTAGGAGTAGGAGTTATCTCAAGCAGATTAAGAG
GCTCTGAAATACCTAGCATAATTAGTAGGACTGGGAGTTGGCTTAATTGAGTTTTCTTTTCTCAA
CAAATACCCATACATTGATAGATGACTTTAGTATGGGAATCTCTTCTTTGTTTGTCTTAGGAATC
TCCTTACGTCCCTTCTCCTTTTGTCGAGTCACTTCGTACCCTTCGCTTCTTACTCAAGGTAAAAA
GCAGATTATGAAAAGCAAGGCAACAGAAGAGAACATTACTTATTACCCAAGGGGACTAGATACAG
GAGCATAAAAACCTGTAGCTGAAAGGCTAGCAACCGGAAGCACATTGATTGCCCATTACCCCTTC
TACTCCACTGCTTACATTTCCTCACTCCCTATTTCCAATCTAATGAGAAAGACCTGTCCTGAAAC
AACCAGAGTAAAGGAAAGAGCTCCTTCTGTGTCCGACGTAGGACT



Found at i:1690010 original size:15 final size:15

Alignment explanation


    Indices: 1689992--1690030  Score: 78
    Period size: 15  Copynumber: 2.6  Consensus size: 15

    1689982 ATGGCTTTCA

                           
    1689992 ATACCTATTCTTTAT
          1 ATACCTATTCTTTAT

                           
    1690007 ATACCTATTCTTTAT
          1 ATACCTATTCTTTAT

                     
    1690022 ATACCTATT
          1 ATACCTATT

    1690031 TAGGGATTCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51


Consensus pattern (15 bp):   
ATACCTATTCTTTAT

Left flanking sequence: Indices 1689492 -- 1689991
AGACTTAAAATGAAAGTTTCTTTTTCGCACTCACTCTACATCACATTGTCAGAACATTCTCGTCA
GATTTCGGATCAAGAACCAGAGTTTAGGTAGTTGGGTGGCTTCGGTAGTGACAGTCGATCTCTTA
GATCATGGGAGACTCTTGCAAAGTCCATTTCTGCTGGCAATGAATTGCTTCTTTGGAAGGGTAAA
GTCTGATTCCGTGAACTTGGTTGCACATGCTTCTTACTCGTTCAGATACTCATCATTTGCATGCA
TCCATCTGCTTACTTTCTCTCTCTGAAGGCGAAGAGGGCATAGTAGGTGACTACTTTCTTTATAC
GCGTTGCGACAAACAGCCAGAATGTTGCTTCCTGGATATCATCAGCGCAGGTTTTCACCGGCAAA
TAGGTGAACTATTCGAAGTCCTACTCGTAGCTGTGCTATCTTTCTTCCTATTGATCGCCTGAATA
TGGTTTCCATACCTCGCCTTTCAGCCTTGCTTGTTATGGCTTTCA


Right flanking sequence: Indices 1690031 -- 1690530
TAGGGATTCCGCTCCAAACAACGTCCTCTGAGTCGCATAACTACTACAATACATCTACTTCGTCG
CTTTGCTTATTTATGGATCTTCCCCGTATCGGGATGAAGCCCCTTTGACATCTCTTCATCTGCAA
GAATTCCCGGCGACACAGGTGACCCCCGTAAAAAAGTCTCTCGTAAATCGTGCCATTGTTGGCAC
TCCAGGTCCTATCGTGGGAAGAGCAAGAGCACCTCCCATTTCTCTTGTGCAGGCCCCCGTCAATT
CCCTCTCCCTATTCCCTTGTTGACAAATAGTGATTGATCCGTCCCGCACGTCCAAAAGTATTGGT
GTATTCCCATATCAATCAAACAACATTCTTTCTAAGCAACTCCGCTCTCTACAAAGGAAGTAGCT
CCCCAAACGGAGAAGTCTAGCACCCCCTTGAAATGAGTGCATGTACATCACACTTTGGCGCTTAT
CCGTGATAGTGTGGTCAAGTTGCTTTCATGGCAGCCACCATGCGA



Found at i:1690628 original size:27 final size:27

Alignment explanation


    Indices: 1690590--1690643  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

    1690580 TTGTCACAGG

                                       
    1690590 AGCAGGGGGTTTGATAAGTTCTTCGAT
          1 AGCAGGGGGTTTGATAAGTTCTTCGAT

                                       
    1690617 AGCAGGGGGTTTGATAAGTTCTTCGAT
          1 AGCAGGGGGTTTGATAAGTTCTTCGAT

    1690644 GGGGCTTCTG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.22, C:0.11, G:0.33, T:0.33


Consensus pattern (27 bp):   
AGCAGGGGGTTTGATAAGTTCTTCGAT

Left flanking sequence: Indices 1690090 -- 1690589
TCGTCGCTTTGCTTATTTATGGATCTTCCCCGTATCGGGATGAAGCCCCTTTGACATCTCTTCAT
CTGCAAGAATTCCCGGCGACACAGGTGACCCCCGTAAAAAAGTCTCTCGTAAATCGTGCCATTGT
TGGCACTCCAGGTCCTATCGTGGGAAGAGCAAGAGCACCTCCCATTTCTCTTGTGCAGGCCCCCG
TCAATTCCCTCTCCCTATTCCCTTGTTGACAAATAGTGATTGATCCGTCCCGCACGTCCAAAAGT
ATTGGTGTATTCCCATATCAATCAAACAACATTCTTTCTAAGCAACTCCGCTCTCTACAAAGGAA
GTAGCTCCCCAAACGGAGAAGTCTAGCACCCCCTTGAAATGAGTGCATGTACATCACACTTTGGC
GCTTATCCGTGATAGTGTGGTCAAGTTGCTTTCATGGCAGCCACCATGCGAACCTGCAGTTATGC
TTAATACGTGCGGGGCCTCACAAGGTAACCCGGGCTTGTCACAGG


Right flanking sequence: Indices 1690644 -- 1691143
GGGGCTTCTGGTGGCATGGCAATATGGGTATAGGCTGGTGCAATGTAGTATGGACTCAAAGCTTG
TGCTGGATTGGGTTAAGACAGCCGATACAAGACTTCACACTTATGGAAGCCTAATTGAGGATATC
CGGATGCTACTGAGGCGAGAGTGGGACTGATCCTTGAACCAGACTTTGCGAGAAGGGAATTGATA
ACCCCTCTTTGCTATACTAGACCCTGACCTGTGAGTGAGCCTACACTATCTCTATTCGAGTGAGT
TCCACTTCTTATATGCCATCTCTCCTATCCAGCTTCTGATTGCAAGATTTGACGAAAGAAAAGGA
AACCTAGGAGAAAACAAATAGATAAGGCTCTCACAAGACCTATCGAATAGAAAAGCTACTTAAAA
CAAAGGATTCCAACTCAACTACTTCTTCCGAACTAAACCCTTGCTCTCAAGCTGCTACTGAACGA
GAAGACCATTTCCTTTAACTAGCTGCACGAGTGGGGGACACATTT



Found at i:1693480 original size:29 final size:29

Alignment explanation


    Indices: 1693447--1693506  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

    1693437 CCCTAACCGG

                                         
    1693447 TTAAAAAGACGGTAAGGCCTATAGTCCAA
          1 TTAAAAAGACGGTAAGGCCTATAGTCCAA

                                         
    1693476 TTAAAAAGACGGTAAGGCCTATAGTCCAA
          1 TTAAAAAGACGGTAAGGCCTATAGTCCAA

              
    1693505 TT
          1 TT

    1693507 CCGGAAAGAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23


Consensus pattern (29 bp):   
TTAAAAAGACGGTAAGGCCTATAGTCCAA

Left flanking sequence: Indices 1692947 -- 1693446
CAACCAATGATCTATCACGACAGACGCCAGCAAGAGCACGGCTGGGTAAACTGGGACAAATAAAC
AGGTCGGAAAGACCTACAAAAAGGGTACCAACCTATTCAATGATAGGTAATTGATTCGAATAGTA
ATGAAAAAAAAGGGGTAGATCTTAAACATCTTACCTGCAAAAAACCACTCTTCTACTTGTTTGTC
GTTCGGGATCTAAGTTGCGTATCGGATAGAAAGGAAGCTCGTATTGAGCTCAAAATAAAATATAT
GCTATTCGTATTTGGCTTCAGCCGTAACAGCAACAGCTAAACAACTTTTTCTATCAACTAGAGGT
AGGGGAATCTCATTCCCACCAGACACTCAAGGTAAAATAGAGACCCGAGGACTTATTAAAGGTAC
AGTGGAAGGCGAGCTAACTTCCTAACCTTCTCTCAAGTCCATCGGAATCTCAATATCTAGGGAAG
GCTGCCTCTTCATCATACTCATCCAATCAAGTACTCCCTAACCGG


Right flanking sequence: Indices 1693507 -- 1694006
CCGGAAAGAAATTGAATTCAAAATCGTTCACTTCGAGTCCAAATTAACTCTATCTCTTTTATAGT
GTCAGGAAATTCCATAGGCGAAGTAGGGGACACGGGGAGTTGAACATCAAAGGTAACTGATCCAA
TTCTATCGGAAAGGGAAGAACCGTAAGAGAAAGATGAATCAGAATAACCACTGGCTACCCGAACT
GCAACAACAACATCAGTCACTAGCGATCGCGAAGGGAAATAGAAGAAGCTTTTCCCGCATTCCTG
TTGATGCAGAGATCAGACGAGAAAGCCCATCTATTTACTAGAATCCGATGTGATAGAAGGAGCTG
CTCTAGCTTAAGCTTAAGTCGATCCTTACTTAATAGAATAGCCGAACGAATTAGCCATAGAGCTC
ATCCCCGGTTAATATAGTTGATGATTTCTTGATGGTTGACTGCTATATCTTAATTAGAGAATCGA
CTGGGAACGAATACTTGAAACAAAAAGAATAAGCGATGCCATTGA



Found at i:1700184 original size:24 final size:24

Alignment explanation


    Indices: 1700157--1700204  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1700147 ATTCTACTAT

                                    
    1700157 ATATTGCTGTAATAGTTCAATCAG
          1 ATATTGCTGTAATAGTTCAATCAG

                                    
    1700181 ATATTGCTGTAATAGTTCAATCAG
          1 ATATTGCTGTAATAGTTCAATCAG

    1700205 TCCCACTCCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38


Consensus pattern (24 bp):   
ATATTGCTGTAATAGTTCAATCAG

Left flanking sequence: Indices 1699657 -- 1700156
CTGAATAATCCGGAGCCTTTATTGACAGGCCCTGAAGTCAAGGCAAGAACGTTCCAGATTCATAC
TTGGCCAATTCCTTTTTTAAACCGAGACCTCTCTTTCTACCTCTTCCAAAGCGGCTATTGCTTAA
GGGAATGTTGAATCAGGATCAGAGGGGGGAACTAAGAGTTCAGGCTTATTTATTTCCTTCTTCTT
AAACGAAAGAAAGGGCTACGGACTGGAATAGGCTTTCCCTCGGGTTTCATTCTACTCTGCCTGCT
GCATACTTAGCTCGTCCTATTGCAGAAATATCTCGCCTGCCTGCTTTTGCAGCAACATACGTTTG
ACGTTAACCCGTCTTTTTCGCTTGCAAGTCATTTCCTTATACGGGTATTGAAAGAATAAATAATA
GGTTCTGCAGATAGAGCTAGGCTAGGACTTTCTCTCGATCCAGTAAAGTAACCCGACTTTCTGCC
ACTAACCGGGGAACTGCACCTGAGAATCACCTGTTATTCTACTAT


Right flanking sequence: Indices 1700205 -- 1700704
TCCCACTCCCTATTTCCAACCTTTAGCTCAGGAAATCCTAAAACTGAAGTACTTTGCTTTGGCTC
GGAGGAAGAGCGCAGGATTATTTATTGCTTTGGGATACGGGAATGAAAGATAATCAGCCTTGTTC
CAATACCCGAGAGAACTGCTACAATTTAAGGGATTGAGTCTTCCTATTCTCTTGCCGAAGTTTAT
GGTTCAAAAGGAAAGGTATGAAAATAGGCAGACTAATTCGAAGGCCAATAGGAAGAATGTACAAG
GGGTTAGTGCGATCCAGCGTACTGCTGAAGCAGGAAAATCTCTTAATTATGACCCGAAAGCTAGA
AGTTCGACTCCTCTTGCAAGAATGGCTACCGAAAGGGTGGAGGTTTTACAGGTTCGATTATATTG
TGGAGATGATACTATGGAGGTATCTAATAACCTTGCTTAGTTGGGGATACAGGTTCATTTCATTA
AACTCTGACATCCGTCTCTATAATCCCCCGTATGATAGTATTGCA



Found at i:1702197 original size:18 final size:18

Alignment explanation


    Indices: 1702174--1702209  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

    1702164 TCGATCCTTA

                              
    1702174 GTAATCGCTAAATTAAAT
          1 GTAATCGCTAAATTAAAT

                              
    1702192 GTAATCGCTAAATTAAAT
          1 GTAATCGCTAAATTAAAT

    1702210 AAGGGCTCCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33


Consensus pattern (18 bp):   
GTAATCGCTAAATTAAAT

Left flanking sequence: Indices 1701674 -- 1702173
TGTCATTTGTTTATCGAACGACAAGTTTAGTAGAAGAAATAAGGAAATTTTATATAAATACAGGT
GTAGCAACAACCCCTGATATGTTACATTACGGATGAAAAAAGGGACATTACATTTCTTATTCGTA
TTCAAATGTACTTTTTGTCTTCTAAAGCAAGGACCTTTTGAACATAAGAAAGTAGAAGAGGGCTA
GTCCCCGAAAATGCCTTAGGAGTTGGGGGTAAAAATCTTTCTATTTCCCGGCACTGTCACTGGCT
CGCCTCCACTAGAGAACTCAAAATGCGGATTCTGGCCTGCAGGAAAAAGAAGCTCGACTGGACCT
CTTTCTTCATATGGCCCACTAAAAAAAGGAAAATCGCAAACACTGACATTGCCACAAGCGGGAAG
TGCTTAAGAAGAAGACTCAGGAGATCCGCTTTCTTAGAAGAGCTTAGGAATAATAAGAATAAGTA
GAATAAGCTAGCTGATCTAAAAGTGCTCTTAGCAATCGATCCTTA


Right flanking sequence: Indices 1702210 -- 1702709
AAGGGCTCCTAGTTGTTCACATAGATTTTAGGAGGCTCGAAATCCCCTTTGTAGATACTAAGAAA
ATTGCATTCCCATATTACTATAGTCAATTTCTTCCCTTACTAGAAGATCTTCTCTTAAGCTATCG
AATAAGCCAATATCTTCTACAGGACTAAACTAGATCAAATTACCCTACAACTGCTGGCTTTCATT
GCTTTGATGTACTTGAAGAGGAAAGAGGGTTCTCAAAGGCTTTTTTTCTTTACTGGCAGTAACGT
ACTCATACCTTAAAAGCAGAAAAGAAGAGGGAATGGATAGTATGTAAAAACCCTCCTATATCCAT
GGAACCTTTTCCTCCCTAGGGATCACTCCATTCCCAACTATGGAAAAGAAAGTCTTACCGACTAG
GGAACCCCTTTAGGTAAATCTCGTCTAGACATTGTGTCTCGCAAGGAAATTGGCAGCTGGCTTAA
AAGAACTTGATTGAACTAGCTTGATCACATGAAAAGAAAAAAGCT



Found at i:1707295 original size:24 final size:24

Alignment explanation


    Indices: 1707263--1707311  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1707253 CCGGCTCCAG

                                    
    1707263 AAAGAAGACGTCTGTCATCATGTC
          1 AAAGAAGACGTCTGTCATCATGTC

                                    
    1707287 AAAGAAGACGTCTGTCATCATGTC
          1 AAAGAAGACGTCTGTCATCATGTC

             
    1707311 A
          1 A

    1707312 TGGTCTAAAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24


Consensus pattern (24 bp):   
AAAGAAGACGTCTGTCATCATGTC

Left flanking sequence: Indices 1706763 -- 1707262
GAAACCCCTCATACAGTTAGGGTGGAATCTTCCCATGCCCTTGCCCAAAACACTAATACTTCGGC
TTCTTTGGGTGCCCCTGGTAGTCACCGAAGACATTTTTTTAATCAGAACTCATCGAGGAAGAAAG
ATCTTTCGAAGTCCGGTCTTGTTATCAAGAAGACGTTGTTAAAGCTAAAAAATCCAAAGAATCCC
AATCTTGGCAGCCTAAAACTACTTCTTCTATGCCTGCTGTTGCGGCTTTTCAGGGTGCTTGCGTG
CCTTATGGGCCTAATCCCAACCCTAAAGCTTTTGCAGCCATTCTTGACACTGCTTTACAAGATTC
CAGTATTGTAAATAGAGTGGATGCTCCTGAAAAGACTTTGTTGGCTTTTACTCCAACCCCGCCAC
CATCAGCTAAAGACTGACGAAACCTTGTTTTTAAATCTCATATCGGATGTTAGAGAGTCCATCTT
GCCTAAACAGTATGGGCAATAGCACTTTCACATTACCGGCTCCAG


Right flanking sequence: Indices 1707312 -- 1707811
TGGTCTAAACCAATACAAATGCTTAACTCTTTAATCGAATTCTTAGTTTCTTCCTTCGACTTGGA
TGGTAAGGTTATTTGTGAAGTTGATGATTGGATTTCTCATGATCATCAGCTAATGCAGCATATCT
AGAACCTGAGACACCCTCACTTACACCATTCGGCTTTCTCACTGGTTCTGCAGTTTTTCTTACCG
AACCTCGTGGCCTACGAGTCTGAGCTACCATCCAGGGGCCATAGGTCGACTGATCTTCCGGTACA
CCAGTATCATTCTTCAACACTTCATTGTCCCTTACAGCCTCTGTATTTCTGTTAGGAACCTCAGT
ATTTTCTTGGTTAAGTTCATTTGCTTTCCTTAATTCTTACTTGAACTCTTTGCAGTCTCTATGCC
CCATATAACCACAATGAAAGCAAAAGAGGGGAAGCCCTTCTAACTCTACCCGAGTCCAACGACCA
TCTACATTGACTTTCGGCACAAATGGCTTATTTAGATCAATCTCG



Found at i:1709160 original size:21 final size:21

Alignment explanation


    Indices: 1709136--1709177  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1709126 AATCTACTCA

                                 
    1709136 ATTGATGAAAGACCGTATTTT
          1 ATTGATGAAAGACCGTATTTT

                            *    
    1709157 ATTGATGAAAGACCGTCTTTT
          1 ATTGATGAAAGACCGTATTTT

    1709178 TAGCTTACTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38


Consensus pattern (21 bp):   
ATTGATGAAAGACCGTATTTT

Left flanking sequence: Indices 1708636 -- 1709135
GGATTGCTTATTTCTTTTCTTCTTGGGGAAAGTTGGTACTCGCTCTAAAGGGCAGCTAAGAAAAT
AGGTGATACCGGCACCTACCCCTTCCTAATGATATCCCGTCAATAAATACCTTCAAGCTCGGGTT
ATAATCCTAGAATCGATAGTTTCCAGAAAGCGAAAGGGATTCATCTTCCGGGTCTATTTGACAGA
GTAAGCGCTTTCATCAGGAGATGAGACGTAAGGAGAAGGACAGGACTCGACAAAAGGAGAGGGGC
AAGAAGGAATTAAGTGCTTTCACTAGTAGGATGTCCTCATTCTGTATTCTGGTAATCGGATTTTA
GGGGACCCGCCTCAACAGGAAGATAATTAGGTAGTTCAGCATCTAGAGCTCATTAGCAGCTTCAA
CTCGACTGTGAGAAAGCAGCCAGCTTTGGAAAGCAGAAGCAAAGACCGGGAAGAAAGAACCATAG
GCATCGAGGGCATTTCCTTAAGAAAACGAATTAGAAATCTACTCA


Right flanking sequence: Indices 1709178 -- 1709677
TAGCTTACTTATCGATTTCTTTGAGCTTAGCCGAACTACTTACTTGGCTTTGTATCGGCTGTTGA
CTCAACAAGGAAAGAAAACATCTGCTTTACCGTAAGGTTTTGTTGTATAAAACCCACCCGCTTAA
TCTCCTTTGACTTGCTAGTTGCTATTCCTTTCCTTAACTGCTGTTTGGTATTTCTCTCGAGCTAA
AGGTCGTGTGAGGGGAATTGATCTATCTATTGATCAAAGTCTTTCTTCTTCTAGCTCATCAACCG
GCTTAGCGCTACGCCCCTTCTTACTATCGGGATAGAAAGAATAGCTAGTTATGCCCCTTAATTAA
TTCCCTCTTCAGCTAGTGAACTAACTGCTCATCTTGCCTATGAACTTGCCTGAAGCAGGAGAAGC
GTCATCAGAAACCTTGGCGACTACAAACTCTTTTCTTTGGCGATGTAGATGCCGAGAGAACAGGG
GATAACTACTAGAAGAGATAAATAACGTTTAGAAAGATAAAGATT



Found at i:1715031 original size:21 final size:21

Alignment explanation


    Indices: 1715005--1715047  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1714995 TGTTCTCTGG

                                 
    1715005 TCTAAGTATCCTGAGTAGCTT
          1 TCTAAGTATCCTGAGTAGCTT

                                 
    1715026 TCTAAGTATCCTGAGTAGCTT
          1 TCTAAGTATCCTGAGTAGCTT

             
    1715047 T
          1 T

    1715048 ATGGGTTCAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40


Consensus pattern (21 bp):   
TCTAAGTATCCTGAGTAGCTT

Left flanking sequence: Indices 1714505 -- 1715004
TCCTAAGCTTTGAGGCATCAAATAAGGGGCCTTTTGTTCCACCCAAGGGTAAGTCACTTCTTATC
TAGGCGTCGAACTCTTGCGCAATCTGTGCTTCATGCAATCCCGCTTTCACTTACATAAATAAGAC
ATTTCTTTCATTCAACAACTCAAGCAAAAAAACCGCCTTCTTCTTGTCGTTCGGGAGTTTGCTCG
CAAGAACTGCCTGCCGTTGCTCTCATCTATGGTCGCGGAAAAGGGAAAGCACATGGACATGGAAT
AGGCACAAGCTAAGGCCAAGGAAGGATAGGCTTCGTAACAAAAATCCTACTCAAAAGCTTACCAC
CAAGAAAATAAATTGAATCCGCATCTCTTTTATCTGCTCGAGAAGAATTCGCACTTCCGGAATAC
ACCATAGACTCAAGGCTTCGGATTAGCTTTTCAGAAGTGGATCTGCTGTTCTTTCTTCTGAGAAT
GATATTTACTAGCGGAATCTGTTCTGATGAGCTGTTGTTCTCTGG


Right flanking sequence: Indices 1715048 -- 1715547
ATGGGTTCAGAGATTCTGAGTTAGCCTTCTCTAGCGGTATCGGCTTTCGGATAAGATTATGATCC
GAGAATAGAAATGGCCATTTACCTCGAAACTTCATAAGAATTGTCATGTCATTCCGGGCCTTTTT
CATATGAATCAAACAAAGGGCTTTCGTCCCAATCCTGCTTCTGTTCCATCTGCTATGCGGGCGTA
CTCTTTTACTTGGTTTTCTGAATCATCTTTCGAAATGCAAAGATCACCAACCAGTGAATTTGACG
ACTTTGAGCATTCCCTAACCGGTTAACTTTACGGAAAGACGGGGATTTTAGCTTATTTTTCTATT
TCCGATAATCAATTTCATTCTCAATCGACTCAATTGAAGAAAGACCGTATTTTGAATAGCTAGTC
TCCACACCAAGCAATCGGGGTCCTGCTAAAACAGGAAAACGGACTATTCGGCTAAAGTTGCTTAC
TGGAATCCTGCCTTTCTTGCTTGGGCTGGGTAATTCCTTAGATAA



Found at i:1718024 original size:30 final size:30

Alignment explanation


    Indices: 1717988--1718047  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

    1717978 CTGAACATGC

                                          
    1717988 CAAGTCGGCATACGCCCCTCTTGAATAAAA
          1 CAAGTCGGCATACGCCCCTCTTGAATAAAA

                                          
    1718018 CAAGTCGGCATACGCCCCTCTTGAATAAAA
          1 CAAGTCGGCATACGCCCCTCTTGAATAAAA

    1718048 GGAAATAACT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20


Consensus pattern (30 bp):   
CAAGTCGGCATACGCCCCTCTTGAATAAAA

Left flanking sequence: Indices 1717488 -- 1717987
CTGTTCTTACCTGATTTCCTGATGTTACCTCCTTCTCTGCTTTCTTCCTTTCCGAATCCTAAGCA
AGAAGTAGGCTCTACCTCCCTGCTTCATAGCCTTAGTTTTATAAGGGCCTCTCTTCTCTCTACTT
TCATGAACCAAATCCAATTCTTTTTTTTCTGAAGCAGGAGAAGCGTCATCATAAACCTTGCTATC
TGCGGTCTTTTCTTCGATAACAAAGGGGATTTAGCGCTTTCAAACCGCTTAAAGACCATAGAACC
AATAAGTGGAATGCATTTTCTGTCTGCTCTCAGTACCTTCTGGAATCGTTGCTGGAATTACTTCC
ATCTTCCTTGTGGACCGATGTCAGTGACTTTGCTTGACATAGCAGCCATCACTGGGCTTCCTGTG
GATGTAGAAGAGGTCTCATGCGTCTCCTCCCTTAGTGAGTAAGATGATTTACTCTATTCCATTCC
TTTTGACGACAAGCTTTCCTTCAACAAGTTCCTTACTGAACATGC


Right flanking sequence: Indices 1718048 -- 1718547
GGAAATAACTGCTTTCATGCTCTGCTTAATCTGCAAGTTTGTTGTCTTCCCTCCTTCACGTGTTT
GCTTTGCTGAGTACTTACGTATTTCGAAGCTCATGGAATCAGGAAGAAGACTTGCTCTGGGTCAA
TTCGTCTTAGGTGCTCTCTACCGTGGACTATATAACATCACACAAAATGTAGAGAAGAGCATTCA
TGGACCAATGTGGATATTGCAAGTATGGGCGTGGATGTACTTTACAGCATTATCTCCCATCCGTC
ATCCAGTTACACTCGCCACTCGATGCTATGGTGATTTGTATTGTGAGCTTACGCATGTTAACAAC
AATGTGCATGATGTTTTCCATGCCTTATGGAATTTAAAAGATAAAAAATTCTTACTCTATACTCG
GCGGAAATTTGGCCCATCATGGTTCCAATAATTGCCTTCCAATGAGAGTGCAGAGATTGTGAAGC
AAGCATGGAAAAACTTTTCCTTGCCGATTGATCTTCCTTTCGGCA



Found at i:1721299 original size:25 final size:25

Alignment explanation


    Indices: 1721268--1721318  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1721258 CACCATCAGT

                                     
    1721268 GTTAAGCCTCACTGCATTTCCTTCA
          1 GTTAAGCCTCACTGCATTTCCTTCA

                                     
    1721293 GTTAAGCCTCACTGCATTTCCTTCA
          1 GTTAAGCCTCACTGCATTTCCTTCA

             
    1721318 G
          1 G

    1721319 GAGGTTTCCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.20, C:0.31, G:0.14, T:0.35


Consensus pattern (25 bp):   
GTTAAGCCTCACTGCATTTCCTTCA

Left flanking sequence: Indices 1720768 -- 1721267
TCTTTTTTTTTGTGAGAAAAGAAAGCTAAATAACATTACAGTTTGAAACCTCTAGGAAAAGCAAT
ACATGGTGCATCAGCCATTAAGACGGGCTGTATATCAGTAGTAGGAGAATGAAGGACCCTGAACT
CTGAAGAGATACCACAGCTGGCCTTTGCTAAGATGTCAGCACAAGAATTTCCTTCCCGCTGTAAA
GAGCAAATCCAAGGCCTTTTCATGATGCTACGGACATCCTCGATGAGGTTGCCATACGGGTGTAA
CCTTGTATCAGCAGCAGTGATAAGATCGACCACTACCTTGGAGTCAACACTGCATTGAATATTCT
TCTATACCCGACCCCAAGCCAGCAATAGACCCAAGCGTAGAGCCTGTATTTCAGCAACCGTCTTG
GAGCAGCACCCCAAGCTAGCCTGAAAACCAATTAGCCACTTTCCATCCGAGGATCTAATAAGACC
ACCCGCACCTGAGAGCCCAGGGTTACCTTTCGAGGCACCATCAGT


Right flanking sequence: Indices 1721319 -- 1721818
GAGGTTTCCAAGAAATCATTCTGTCATCAACAGCAGCAGGCATTTGTCGTGAGAAAGCCTACATT
ACCTCCCTTGTGGTCAGCCAGATGCTTCGAAGCAGGCCAAAGTCACCCATCGCTTCATCCTCTTC
GTTCCAAAGTCACCCATCGCTTCATCCTCTTCGTTGAAGACAGTCCTACAACGCCTAGTCCATAA
ACGCCAACATGTTACCGCAAAAAGCGTTTTCCAGTAACCATCCTTTGCATCATATAAATTCCTCT
TTAACCATTCCATGAGTGGAAGATTAAAAAAGGAAAGGCTACGCAAATCAGAGTGAAAACACTTC
CAGATACTAAGAGATGCCCGACAATCTATTAATATGTGTAGGACAGATTACAATTCTACAGGACA
ATGTATACAAAATCCAGTTGTATCAAGCCACCAGTTATGTCTAAGGCTCTTTGTTAGTAATCTAT
CTCTCAAAGCAAGCCAAAGAAAATAGATCCACCCTAGCTTAGCTG



Found at i:1721456 original size:32 final size:32

Alignment explanation


    Indices: 1721420--1721483  Score: 128
    Period size: 32  Copynumber: 2.0  Consensus size: 32

    1721410 TCGAAGCAGG

                                            
    1721420 CCAAAGTCACCCATCGCTTCATCCTCTTCGTT
          1 CCAAAGTCACCCATCGCTTCATCCTCTTCGTT

                                            
    1721452 CCAAAGTCACCCATCGCTTCATCCTCTTCGTT
          1 CCAAAGTCACCCATCGCTTCATCCTCTTCGTT

    1721484 GAAGACAGTC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.19, C:0.41, G:0.09, T:0.31


Consensus pattern (32 bp):   
CCAAAGTCACCCATCGCTTCATCCTCTTCGTT

Left flanking sequence: Indices 1720920 -- 1721419
CTTTGCTAAGATGTCAGCACAAGAATTTCCTTCCCGCTGTAAAGAGCAAATCCAAGGCCTTTTCA
TGATGCTACGGACATCCTCGATGAGGTTGCCATACGGGTGTAACCTTGTATCAGCAGCAGTGATA
AGATCGACCACTACCTTGGAGTCAACACTGCATTGAATATTCTTCTATACCCGACCCCAAGCCAG
CAATAGACCCAAGCGTAGAGCCTGTATTTCAGCAACCGTCTTGGAGCAGCACCCCAAGCTAGCCT
GAAAACCAATTAGCCACTTTCCATCCGAGGATCTAATAAGACCACCCGCACCTGAGAGCCCAGGG
TTACCTTTCGAGGCACCATCAGTGTTAAGCCTCACTGCATTTCCTTCAGTTAAGCCTCACTGCAT
TTCCTTCAGGAGGTTTCCAAGAAATCATTCTGTCATCAACAGCAGCAGGCATTTGTCGTGAGAAA
GCCTACATTACCTCCCTTGTGGTCAGCCAGATGCTTCGAAGCAGG


Right flanking sequence: Indices 1721484 -- 1721983
GAAGACAGTCCTACAACGCCTAGTCCATAAACGCCAACATGTTACCGCAAAAAGCGTTTTCCAGT
AACCATCCTTTGCATCATATAAATTCCTCTTTAACCATTCCATGAGTGGAAGATTAAAAAAGGAA
AGGCTACGCAAATCAGAGTGAAAACACTTCCAGATACTAAGAGATGCCCGACAATCTATTAATAT
GTGTAGGACAGATTACAATTCTACAGGACAATGTATACAAAATCCAGTTGTATCAAGCCACCAGT
TATGTCTAAGGCTCTTTGTTAGTAATCTATCTCTCAAAGCAAGCCAAAGAAAATAGATCCACCCT
AGCTTAGCTGGTAATTTGAGTTTCCAGAGCCAACTAAAGTATGAAGGACTGCGTTCATCATTCTA
CTCCACCAAGGCCTTATAGGCAGACCTCGAAGTAAATATACCCGACTCAGTCTACCCCCGCCCTC
CCTTTATTTAGCTCATCTGCTTGCTAGCTACCGAAAAGCTATAAC



Found at i:1731022 original size:23 final size:23

Alignment explanation


    Indices: 1730993--1731039  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1730983 GCTGCAGCGA

                                   
    1730993 TCTTCTTATCTATTATCGTAGAT
          1 TCTTCTTATCTATTATCGTAGAT

                                   
    1731016 TCTTCTTATCTATTATCGTAGAT
          1 TCTTCTTATCTATTATCGTAGAT

             
    1731039 T
          1 T

    1731040 AAGTAAGGTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53


Consensus pattern (23 bp):   
TCTTCTTATCTATTATCGTAGAT

Left flanking sequence: Indices 1730493 -- 1730992
GTATGGAACAAAGGAATGCGCTTTTGGAGGAAAGGAATCTTAAGAGGGTCACTTTGTATCGTGAC
TCACCCAAAACAGGCAGATCGGGGAGAAGTGGAGCTAGGCAGTGTGTCGTTCCACAGGCTCGTGC
TAGTCAAAGGCGGAGAGAGAAAGCCTACCCTTGCTGTAAGAAGCCGGCCCTCCAAGTCTCAGTTC
CGTCGTTGCTGCCCTTTACAAAACCCTTTCTTAATAGGTTGAGGTTAAGGCTCGTTGAGACCTCT
CAATCGGCTGTTCCATTCCGTTTTGCCCTTTGGTTGATATCCCAATTAGCGTATGTTCATATGTC
TCCAGGCTAGTTTAAATAACTCATAGAATGCCGTGCTGTTCTCTCATGCCTCTAGGGCTGCCTTT
ACAACCCCAAAAGAGCAGACATCCGTGAGATAGCTAATCAATGGGCGAATGTTTCATTCAACCAG
TCAAATAGGCTAAACTCGTTCCCTAGCTTTCAATAGCTGCAGCGA


Right flanking sequence: Indices 1731040 -- 1731539
AAGTAAGGTCTTTCGGATCCTCTTTGATCGGAAAGATTCTGTGAACATACTCATTTCGCTAAGTC
CGCTGCTTCACCTCTTGGTACAGCAGCTGAACCCATTCATTTCTGCTTCCTTGGTTGCTGCACCT
CCTTCTGCTTTGGTAACGAAAGCTGCTTACCCCCGGCCGGACCTTTCAATCGAATGTTCTGTCTC
ACCCGAATCCATTTCCGTATTGGTTGATGGTTGAAGAAAGGTGTCCATGGGAAAGAAAAGAAAAG
GGCCAAGGGGGAGGTTGTGTGTGATGGTTTTTTATCTCTGTCTCATATATCCATTCATAAGTAAT
TTTGCCTTATCGAACTCTGAAGCTAGTGAATCAACAAGTAAAGCAGACAGTGAAACCATTTGCTA
ATCATAATAAGGTGCTTGCTTACCTAAATAAGGTGCTTGCTTACCTACCGGACTACTAGCCTGCC
TCACGGTTTGGGATTCTTATTCGATTATTCGCTAATTCATCTTCC



Found at i:1731459 original size:21 final size:21

Alignment explanation


    Indices: 1731435--1731476  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1731425 TGCTAATCAT

                                 
    1731435 AATAAGGTGCTTGCTTACCTA
          1 AATAAGGTGCTTGCTTACCTA

                                 
    1731456 AATAAGGTGCTTGCTTACCTA
          1 AATAAGGTGCTTGCTTACCTA

    1731477 CCGGACTACT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Consensus pattern (21 bp):   
AATAAGGTGCTTGCTTACCTA

Left flanking sequence: Indices 1730935 -- 1731434
TTCATTCAACCAGTCAAATAGGCTAAACTCGTTCCCTAGCTTTCAATAGCTGCAGCGATCTTCTT
ATCTATTATCGTAGATTCTTCTTATCTATTATCGTAGATTAAGTAAGGTCTTTCGGATCCTCTTT
GATCGGAAAGATTCTGTGAACATACTCATTTCGCTAAGTCCGCTGCTTCACCTCTTGGTACAGCA
GCTGAACCCATTCATTTCTGCTTCCTTGGTTGCTGCACCTCCTTCTGCTTTGGTAACGAAAGCTG
CTTACCCCCGGCCGGACCTTTCAATCGAATGTTCTGTCTCACCCGAATCCATTTCCGTATTGGTT
GATGGTTGAAGAAAGGTGTCCATGGGAAAGAAAAGAAAAGGGCCAAGGGGGAGGTTGTGTGTGAT
GGTTTTTTATCTCTGTCTCATATATCCATTCATAAGTAATTTTGCCTTATCGAACTCTGAAGCTA
GTGAATCAACAAGTAAAGCAGACAGTGAAACCATTTGCTAATCAT


Right flanking sequence: Indices 1731477 -- 1731976
CCGGACTACTAGCCTGCCTCACGGTTTGGGATTCTTATTCGATTATTCGCTAATTCATCTTCCTA
TTTCTTGTCACTTGAAAGATAGATAGGTCATTACGGGCATGTTGCCTTCCCTTCCTTCTGAATTA
ACGGATTCCCTTGAAGTACCTTCTATTCATCATCTGATGCTGATTCTTATAAAAAAATCTCTTTA
GCAAAGCCATCCCTTTGTCAAGGGCCAAGTTCCTGAAATTGAATTGAATAATCAAATCTTTGGTC
AATGAAACTCTGGCACGTATACGTAGGCTTTTCCTTACACAATTAATAGAACTCAGTTAATAGAA
CTAAGGCAGGCTAATCAAGATCATAGATTCTTACCACCCGTTCCAGGAAATAGACACTTCGGTAT
GGGATCAAACTGATGTGGCTTAATCAGGTGCTGTTGCTCAACCACCTGCAGTATCATAGACCATT
TCCATCACTGAATCATAGGATGATGTGTCAAGATGTTTTTGAAAA




Done.