Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: KT894205

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 1829341
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29

Warning! 14 characters in sequence are not A, C, G, or T


File 3 of 5

Found at i:839028 original size:13 final size:13

Alignment explanation


    Indices: 839010--839035  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

     839000 TATTGTAGCT

                         
     839010 GTCAAAGAGTTGA
          1 GTCAAAGAGTTGA

                         
     839023 GTCAAAGAGTTGA
          1 GTCAAAGAGTTGA

     839036 AAGCGGAAAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23


Consensus pattern (13 bp):   
GTCAAAGAGTTGA

Left flanking sequence: Indices 838510 -- 839009
ACTGGAAGTGTCCCGAAGCGGCTCGATGAGGAATGTATTCACATACATCATATTTTAGGATAGTC
AGCAGGAGAGCCCTTTCGTATCTAGCTAGCTAGCTAACGTATCTTTCCAGCGGTTAGTGAGGATA
AAGCGAGAATACCTACTCTAAATCTAAAGATCAACAACCTACACTATAGTGACTTACCGACTAAG
CAAAGGAAGACGAAAGGGATCAGCTAATGAAAGAGCTTGATAGGCCTTGTCTTGAAACAAGCAAA
AAGGTCTTGGAAGCTTTATTATAACATTTTTAGTAGAGAGAGAAGCGGAACCCACAAGCATAGGC
CATCGATTAAGGTCAATTATTTTTGTCTTCTCGATCTTGATGTTGGCTTTTAAGGAAGGGTCATT
TATGGAGTCAATCAGACATCTCGAACTCTGAAAACAACCCTTCTATCCATATCATCTAAATTATC
AATATAGTTAAACGAGGGAGAAGTGCTCTCGTCATTATTGTAGCT


Right flanking sequence: Indices 839036 -- 839535
AAGCGGAAAAGACGCATAGCGAGGTCTTCAACTGAACCCATACAGGTGAGATACTAACTGTTATA
GTCATTAACCAGGGCATCCACAGTGACGAGAATGGCGATTGAAACAGAGAAGCTTGAGGCTTCTG
CCGACTCTCGCATCCCTTCTCAAGAAGAAACGGACCATCTGAAACGCAGTACAAAGAAAATCAAG
ACAACAGAGAAACCTCCCCAAGAGGGCACTACTGGGGGTGATAAGTCCTTTAAGGAAACCTTATT
GGGCTACAAATCGAAGGATGGAAGTTGAATCGACACCATGATGGTGGAAGGGGAAGACGTCGATT
CCGATGATGAATCCGAAACTCTTTCGAAGGACGGTATCCCTACCGTTAAAATCACCAAGGAGATG
AAGAAACTGCTTCGTGCACCGTGGCGCTCTGATTATTAAGCTCCTAGGCAAGACTATAAATTTCA
ACACTCTCACATCTCGTCTTACTCAAATGTGGAACCTCATGGGGG



Found at i:841729 original size:17 final size:17

Alignment explanation


    Indices: 841707--841741  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

     841697 GAAAGAAAGT

                             
     841707 AAGAAAGTCACTAAGAC
          1 AAGAAAGTCACTAAGAC

                             
     841724 AAGAAAGTCACTAAGAC
          1 AAGAAAGTCACTAAGAC

             
     841741 A
          1 A

     841742 CTAATGCAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11


Consensus pattern (17 bp):   
AAGAAAGTCACTAAGAC

Left flanking sequence: Indices 841207 -- 841706
AAGATGGAATATAAAGAAAGGGGCTTATAAGCGGAAACGAATATGAGCATGGAGTGAGCAGAACA
ATGGTGCGATGTATTCAACCAGAAAAATGGGAAATTAGAAAAGTGGTCTAGTAGGAGGAGTAAAG
GAATAAGCTCTGATTCTTTTTTCTGATTATTGTTTCTGACTCTTTTCCCCCGGTAAATTCTTTAG
ATCTTCTCTGGCTTTATCCTAAGAAGTGCAGCTATCTCCGCCTCACAGCATCAGGGAGGTTTTCC
ACACAACATTTTCGGTTCACTTCTAGGCACTCTCGATCAACAGAAATAGGGTTCACCCCCGGTCC
ACAGGCTCTCGATCTTTATCTACAGGGTGCTTTGGACTCTCCCTTTTCCTCTTTTAAATGCCTTA
GGTGATTCCCTTGGCTACGAAACTTGTAAAAACATCAGTAGGAGCCTTTTTGTTCAAACATGATC
AGGTAGGAATTGCTCCTAACCCAGAAGAATCGGGGGAAAGAAAGT


Right flanking sequence: Indices 841742 -- 842241
CTAATGCAACAAGACGAAAAGCGTCATAAAAGGGGATGCGACCATGAATCGAACCAGATCGAAAC
ATTCAGCTGTTGACGGACAAACTTTGCCGAAACGTCGACCGCAAACGAAGGATGGCCAGGCCCCG
GTTCCCAGGGTTAGAGTATTCCCTATTTTGAGCCTACTCAAATCAGAACTAAAAACTATTTGATT
CTCTTTCGCCTATCGGCCGGCTTTAAGCAACCTTCGCATTTCCTGCTGAAATCCCAAGTCTCCAA
GTGGGCCCTCTTGGCCACCCGCGACCTTGGCTTTTTAGAGAATCCCGCTCCTGTGTCGTGGAACT
TGTAGCTCGGCAGTCCCCCGGGTGGGTTTGTTTATCCTTCCAGTTTCGAGTGTCTTCTTGGATAG
TTATAGCGGCCCATAGGCGCAAGATGTACCTTGTGTGGGGGTGCGGCGGTCCCCTGGACATAGTC
CTTTCAGGCAGTGTCCGTTTAGTCCATGGTCCATTGGATGGTCGG



Found at i:849642 original size:20 final size:20

Alignment explanation


    Indices: 849617--849656  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     849607 TCTTGCCTTC

                                
     849617 TATATAATACATACTACTGG
          1 TATATAATACATACTACTGG

                                
     849637 TATATAATACATACTACTGG
          1 TATATAATACATACTACTGG

     849657 GGCTAATAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35


Consensus pattern (20 bp):   
TATATAATACATACTACTGG

Left flanking sequence: Indices 849117 -- 849616
GAGGAGAAAGGGAAGAGGGTACATAAAGTTCAGGTCAAATAACTCGCCCCAATAGCAACTACTTC
CTTCCAGTCATTCAGTCGGATATCGAAACCTATCTGACTGCCGGTTAGCGAAAGGGTATAGTTTC
AAGGTAGGCAAGGTCTCGTCGCTTCGGTGAATCACCGTTTGGCAGCGCCTGAATACACCACTAAC
CTTTACCCGAATCAACTCAGAATAATATACCATATACGCGGTTTTTCACAGGATTTCTCGTTACT
CATGTCAGCATTCTCACTTTTTAAGCTCTCACACAAATAAATGCCTGGAATTTATCTCACATAAC
TATTCATATATGATATTTATTCAAAAAAGGGATTAAACTACACGGTCGATAAAGATAGGTACCCT
CGAAATAGAATAGGCCATTGAGAAGAACCGGGATTGGGATGATGTGTAAGCAGCGAAATGCCGAT
TGGCGAATGGTACGAAGTCGGTGAGCTTTCATTCATCTTGCCTTC


Right flanking sequence: Indices 849657 -- 850156
GGCTAATAAGGAGAGGAGAATGAGCGTAGCCATAGGGATGGATAAGAATGGCGATGAGATCAAAG
CTATTGATTGCTGCTAGCCGACAGACTCTGAAATGCTTCCCGTTCTTGGAAGAGTTCGTAGGATT
CTTCTGATAATGAGAATCCCGTTGCCTTAAATGTGCATGTCCCTTTCGTTATTACAACCTTTTTT
TGATGTCAAATCCCAGAAGCAAGGCTAAAACGAAATTCTGATTCGCTGTTACATATCATTTAAAA
GCATCTTCGTTGCGGAGAAGCGAACAAGCTGAAACATCTTAGAAGTCTAAGGCTGGTAAGCCCTA
AGGCACGAAGGTGGAAATTAGAAGAGGACGAAGTAATAATTTCTCTTTTCGAAAGCTCATCCATT
CCTTTCTTGATCACTGATTGTTCTGATAGAGACTACGAATCTCACTCTATCTACTACGATATTCT
TTCTTTTCCTCGTTAGACTCTTCGCTTTACAGCTCAAGCCCCGGT



Found at i:853345 original size:30 final size:30

Alignment explanation


    Indices: 853311--853370  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

     853301 TTATTCCGGC

                                          
     853311 CTTGGGTTATCTCAAGCTGTTGAAAAAGCA
          1 CTTGGGTTATCTCAAGCTGTTGAAAAAGCA

                                          
     853341 CTTGGGTTATCTCAAGCTGTTGAAAAAGCA
          1 CTTGGGTTATCTCAAGCTGTTGAAAAAGCA

     853371 GGGGATTCTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Consensus pattern (30 bp):   
CTTGGGTTATCTCAAGCTGTTGAAAAAGCA

Left flanking sequence: Indices 852811 -- 853310
GGTTTTTCCGGCTTTCACGAGATCCATTAGGTCTGCGCAAGGTGATAGCACTACTGGGCGAAAGG
TTTTTGGGATCAAAAGCAACCTTAACTAGATGGAGATTCCTATGAACAGATGAGGATCCATTCAC
TTACGTAATTTCTAGAGAAGGAATCCCTTTTCATCGATCGGTTGACCTCTATGGTGCCCCTCTTT
ACACGCTCGTGAGCCATTAAGTAGTATGATTCACTCCCTCACCCGAACCTACCTTCATTAACGAT
TGGTGGCATGAGCGATAGCGAACCCTACTAATGGTTGGATCGGAGTAGGCCAGTGGTTTAGTAGG
GGTGTCAGATATTACGGTCGGTCTCATAGAGGAAGCCAATTCCCCGCTTTCTGTCATTTGAGGAG
AATAGTACCCTACCTTTTTTACTGGTCCTTTGCACGCCTACGGCCAGAGGAAAGGGTTGGTTTCT
TCCCACTTGCCTGAACTGAAGTAGTCCGAAAAGCTTTATTCCGGC


Right flanking sequence: Indices 853371 -- 853870
GGGGATTCTTTTATGACTCCAACTTCTTTTACTCCTTCTCCGCGAGCCTATTCTGATTCATCTTC
CGGGTATTGCTCAAAGTAGTCCCACAGTCGACGACGAACCTCAGGGATAGGGCTCGCATAAACCG
CGTATAGGAAGGCCCTTGTCTTTGATGATGAGGTTTTCGCTTAGTCCTTCTGCATCTCGCCTGGC
TGCTTTTGCTTTAACGCTGCATTCCGCACTTTACCTTTATCGGGAATTTCATAGGGAATCAAGAA
CAACTTTAAACGACATCGACTCTTCACTGGGCAGTACTTCTAGCGCTTTTCGTTTAGGGACTGTT
CTCTACCTTTTATTAATCTGGTTGAGTAACCGAAGTAAAGACTTCCCCATTATCGTATCCAGGAA
GAAGAAGCGGGGCAGTGAGTAAGATTTTAAGGCCGAAGCCTTCCTCTTTGATGAATGATGAGTTG
AGATTCGATATCGAATACGAAGGTTACCTTAATCCCGGGCCGTTC



Found at i:854218 original size:19 final size:19

Alignment explanation


    Indices: 854194--854250  Score: 114
    Period size: 19  Copynumber: 3.0  Consensus size: 19

     854184 GGCATATGGG

                               
     854194 AACGTGATAGCACTAGTAA
          1 AACGTGATAGCACTAGTAA

                               
     854213 AACGTGATAGCACTAGTAA
          1 AACGTGATAGCACTAGTAA

                               
     854232 AACGTGATAGCACTAGTAA
          1 AACGTGATAGCACTAGTAA

     854251 GGAGTCGCGA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   38  1.00

ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21


Consensus pattern (19 bp):   
AACGTGATAGCACTAGTAA

Left flanking sequence: Indices 853694 -- 854193
TTCTCTACCTTTTATTAATCTGGTTGAGTAACCGAAGTAAAGACTTCCCCATTATCGTATCCAGG
AAGAAGAAGCGGGGCAGTGAGTAAGATTTTAAGGCCGAAGCCTTCCTCTTTGATGAATGATGAGT
TGAGATTCGATATCGAATACGAAGGTTACCTTAATCCCGGGCCGTTCGTCGCTACGATTTCAGTA
GTCGGTGAGCTTACAAGGTAAGAGTATGATATGAAAGAGTTATTTGAGTAAGGCATGTCGGCGAT
GTCGATTTCAATGTAATTTTTAGAGTCTGATTATGTGTTGCCAGCCCTTGCTGACTGTCTTGGTC
TTGCCCAGTTGGTGGGGTTTGCTGCCTGCCGGTTCCGTCTGCCGTGCTTGTTTGCTTTCCGGTAT
TCCACTATCCCAGGTTATGGGTCGCCTGATTTCGTCACGAGGTCTGATAGGAGGAGAGATTCCCT
TTTATCCAAGTGGGAATGGAGAGGAGGCTCATCATGGCATATGGG


Right flanking sequence: Indices 854251 -- 854750
GGAGTCGCGATGCTACGAAGAGGTGGTTCCTGAGTTGATTAGATTCAATAGGTCTGTGTAGGGGT
TGGTTGTGTTTGTTCGCGAGAGAAGGCTGATGTGTGTCTTGCTTAACGAGTACTTTGTTATTTTT
TACGGGTTAGTCCTCTTCTACCTCCTCGGGAGTCTACTCAAAAAAAGTTTAGCCAATTAGGTCTT
CAACGAACATCCTGGTGTAAAAGGGCCTCCCCACCTACATACTGATCTATATAGGATGGTTCAGC
CCCGGTAAGAAGTGAAGCCGCTAAGCCACGAAGCCAAAGTCGAATAGATAAGCAGACAGACATGA
CAATGACCAAATCCGCGGGCCAGTTTTGAAAGCGAAAAAAGCACAAATTCGCATCACAAGGAGTT
GCTAGAGATTATACCGGTCTCTACTAGTTGTTTTCTCAATTAGAAATATGAGATCCACTGTAGTG
AAGTTGAGCCTAGTGAAGCAGCCAGAAAGAAGGCTTTCATTCAGG



Found at i:855658 original size:19 final size:19

Alignment explanation


    Indices: 855634--855672  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     855624 TCACATATTG

                               
     855634 ATAGAAGTAAAGAATCGAT
          1 ATAGAAGTAAAGAATCGAT

                               
     855653 ATAGAAGTAAAGAATCGAT
          1 ATAGAAGTAAAGAATCGAT

             
     855672 A
          1 A

     855673 CGAATATCTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.54, C:0.05, G:0.21, T:0.21


Consensus pattern (19 bp):   
ATAGAAGTAAAGAATCGAT

Left flanking sequence: Indices 855134 -- 855633
GAGCTCTCTGGTTCTTAGTCTTGTTCCTCTCCTGGTAGGTCGAGTTGCTTTGAACCTACTTTCCA
GCATCCTCGGGGGAATACCTGGATTAGTAGCTTTTTCAACCCCTCTCCTATGAAGGTAAGTCAGT
CTTTAGCTACTTTAACTGCTTTACCTCAATACCAGGTAGTAGAGTATCCTAGCTTTACTCCCCGC
TTCTAAAGAAGAAGCTTTCCTTGTCCCAGATAGTTCAGTAGCGAATGTAGCTGAAGCCTACGCAG
CCGGGGAGGAAGTCCTCCTTATCCCCCCCTTCCCGCGGTTATGTTAGTAAGGCTTCTCAATCTAA
GCGAAGAGACCTAATGAAAAGAAGGATCGAGGATAGCACGGAAAACCACTCTCATACTATTTTGC
ATAGGGAAATGAATGAAATCAATTAAGTCAATCAATAAAATCAATAATAGAAGATATGAATCTCA
ACGAATAATGAACTCAACTCAACAGATCTTCCTATTCACATATTG


Right flanking sequence: Indices 855673 -- 856172
CGAATATCTACTCTTAAGAGTGAATTATGAGTTAAGATTGAATTGTGCAAGTCAGATTGATGGGG
GAATCGAGCAGGAACGTAAGGTCGATTGGGTTACGCTGAGGGATCACCCCATTTTTCAGGGTTTA
TCGTACCCACATCTCGTATCGACTGGTCAACCGCTTTCGCCATCGCCTTAGTCACAAGCTTAGTT
ACGAGAGTTGACAACGCTCTACGTTCATCTAAGAGCGTATCCTTTGCCCCGTCCCCATACATCTC
GCGGACCACCCTGACCTGGTCGTCAAGATTATCGACGTAAAAGTCAGACGGCGGAAACCTATCTG
TCCGGCGACAAATCTCGAGTCGAAATAAATAATCGACCCTTAAGCGAAGGTCTCTCTGATGCTCC
GCCACCTGTCTTGCCACCTTTTCGATCCCGGTGGTCTGGTTAAGCGGCATCGGATCGAAGTGTAC
TTGAGTAACTTAGGACCCTATTTTCAAAAGAAAGTCGAAGTTCTA



Found at i:867501 original size:17 final size:17

Alignment explanation


    Indices: 867479--867522  Score: 88
    Period size: 17  Copynumber: 2.6  Consensus size: 17

     867469 GAAGTTCCAC

                             
     867479 TGTTTGAGCTGTCTTTT
          1 TGTTTGAGCTGTCTTTT

                             
     867496 TGTTTGAGCTGTCTTTT
          1 TGTTTGAGCTGTCTTTT

                      
     867513 TGTTTGAGCT
          1 TGTTTGAGCT

     867523 CTTCTCCCGC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.07, C:0.11, G:0.25, T:0.57


Consensus pattern (17 bp):   
TGTTTGAGCTGTCTTTT

Left flanking sequence: Indices 866979 -- 867478
TTGAGAATACGTAGAACATGAATGAAATAGATGAAATGAATAGAAAGTCATATAATTCACTTTTG
AGATAGACTTTGAGTCCATTGAGGTCCGGTAAGCCTGGCTTCACACCAATAGTAAAAGGTCTATC
CATATCTTCTTGAGAGACCAGTAAAAGAAGAAGCCTATGTAGTCTTTCTAGGTGCCCATAAGAAA
ACCATCATCATCATGAGCTATAACGAGCGAAAAGACATTGTCAGAAAAAGTGGTCTCAGTTGGAG
ATGGAATTGCACATCTTTATGGATTGCATCACGGTTCACAGCACTAGTGGTAGACAGAAGTCAGA
AAGGAAGTTTCAGTTTGTCTTCTATCTCAGAATAAGGCTTCAGGTATAGAGAATTGGCTTTTCCA
CTGGAAGGCGATCGTCTTTTTCACAGGGTCATAGTCCGAAGTTAAAAGCGAAGCGTAGCGAAGCG
AATAAGTAGCTGAGTACCTTTGTAGCTTAGAAGAGGAAGTTCCAC


Right flanking sequence: Indices 867523 -- 868022
CTTCTCCCGCCGTAGACGAAGTTCTTCTCAAATAGGAGGACAGGTGGGATTCTCGATCTCTCCTA
CGCACTTATGTCTATTTCTATTAGTGTAAAGGCAACTCAGCATCAGAGGGCTTCGCTACTCTTGT
TGGGATCTCGTCGATATCTGTGAATCGCGCACTTTATTTCTTTTTTCTTTACTCAACACTTTCCT
GAGGTTGGAGGCTCAACAACAGATAACACAATATTTACTTACGGCGGTTTGTATCTTCCCGTTCG
CCGCGTAGCGGTCTTCCTTTTAATAAATGATATATATATACTAGTTTACTTCGAGTACTCCCCGG
TGACCTATACGCTTTGAATAGTGAGGTTCCTATTGAGGTAGAGATGTCTATTCTATCTATTCAAA
AAGGATTAGAGAGATGGAATCTATCCCATTACTTTCAGTCCCACAGCTGATGAAAATATTCATCT
GTAGTTAATTTTCGCTAAAGCAATTGTAGCAGCTACGGCACTCAT



Found at i:872185 original size:21 final size:21

Alignment explanation


    Indices: 872159--872200  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     872149 GTGGTTCGTT

                                 
     872159 CTATACGAGATTCACTCTTTC
          1 CTATACGAGATTCACTCTTTC

                                 
     872180 CTATACGAGATTCACTCTTTC
          1 CTATACGAGATTCACTCTTTC

     872201 GTTTGTCTTC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.24, C:0.29, G:0.10, T:0.38


Consensus pattern (21 bp):   
CTATACGAGATTCACTCTTTC

Left flanking sequence: Indices 871659 -- 872158
TTGCTCACATCGTACAAGCGCTGACAGACAATAGATTCAAAGCTTACTCCCCCAAGGAAAGAAAT
GCTCTCTAGCCGGGGGATACCCAGTTCCATACCTGAAAGAGAGCCCTATTCATTATAGGATATGT
ATAGGATATGGGGTAATCTATGCCTAGCTATCGAGTTGCATAACCAACTAAGCTGTCTGAAACTC
TGAGATTGATAGAAAGATAAGAATGTCCCTTTCATCTGGTTGAGGGTGCGGGACAAAAAGGAATA
TCTTCTCGCAACTTGCAAACACCTCTTCATTTATGGTTTCGTAGGTTTAGGTTTCTTCCTCAGGG
GATGAAAGAGGGGAGCTAAAAAATAAGTCTTTGGGATTTCAATCTCAACCATCAACTTGCACATC
TCCACGCAAACCGGACAAGGGAAGAAAGCCTCATGCCATCAGAAATCGATTCTCTTCCAGAATCT
ATGAACTTGCATCAATCACTCACTCGCTCTAAGAAGTGGTTCGTT


Right flanking sequence: Indices 872201 -- 872700
GTTTGTCTTCGACTCCCTCTTGTCTAGCCTAGACTTCGAGATAAAAGAAATGCGGGGTCGGAGCT
AACCAATGCTTCGATTCCCAGATAAACTGAACTTCTTTTTTTTATATAAAATGGAAAAATTCAAG
TACAAAACTACTTAGATGGCTCTAGGCCAGACTAATCTCATGGCATCGGCTTGAAGAAGCGATGA
AATTCCTGGTGGTGGAGTGGTGGTGGAGTATCAAAGGTGTGCAATCCCAGTTCCAAGTGATCAAA
ATGAGTAGCCATCCAGTCGGCACAGGCATTGGCTTCACGAGAAATATGTCTGATGGAGTATCTCC
AGGGTCTTGCAAGTAGTTTTTTGATGGCAGAAAATAGTTTGGAGTGAGGCCCTGAAGTAACAGTA
AAGTGTTCAATCTTGGAAACTGCTGCGGATGAATCAGTCTCAAGTTCTACCTCTTTATAACCTTT
ATTCCAGCATAATAGGAGGCCATGATAAATGCACCAAAGTTCAGC



Found at i:878067 original size:16 final size:16

Alignment explanation


    Indices: 878046--878078  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

     878036 GAAAAGCCCT

                            
     878046 TTATATACGATATTAA
          1 TTATATACGATATTAA

                            
     878062 TTATATACGATATTAA
          1 TTATATACGATATTAA

             
     878078 T
          1 T

     878079 CCGCAAAGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45


Consensus pattern (16 bp):   
TTATATACGATATTAA

Left flanking sequence: Indices 877546 -- 878045
TGATCTTAGAGTTTCTTCCTTTGATTTGAGCTAAGCTACTCCACCTATGCCCTCAACCCAGTAAA
TGAAGATTCTTCGATTCGGATAGGCAGCGCTTTAGTAGTTGTCTAAGGTAGATTCTTAGTCTACG
GGAATGGAGCTATGGTCCTTGAGAAGAATGAGGATTCAATTGAGGACTTTGGCGATGGAGATGCC
GAGAGAACGATCTGATCCGGGTATAACTACTATAAGTGAGAAATCAGTAGGGGCAGAAGCAGAAG
GGAAAGGCTAACTACCCTTTAATCCTTAAGAATGAGTTTCAGGCCTTGCAGAGCCTACTACTTCT
GGTTTCTCTCTCGGGGTTTTCGAAGGACTGAACCGATCGATAGGGAATTGGTTGTTAGAAAGTTA
GATCGGTATAATTGGAATCGAATACCTATATTTCAGAAGTCTTAGCAAGACGGGAAGTCCCTTGC
TCGAAACCAGACCAAATCCTATGAACCTACCCACAGAAAAGCCCT


Right flanking sequence: Indices 878079 -- 878578
CCGCAAAGAAGGGATAGTAGATCAGCTCAATCGATTCTCCTCACTTGCTAGAACCAAATCAAATA
CGGAATTCCCAATCTCCTCGACTGTGAAAGATAGGGCGCTACACTAGACTCGGACTCGGTTTCAT
CGTCTAAATAGTCAATGGACTCTGACAAGACTTTAGAATAGGACTCAGGTTTACTTTTATTAAGG
TGGTGGAGATACGTTATCAGATGTCACTGGATCAGATGTCACTGGGCCATTTCCCGTTTCTTAAC
CCGTCTACCCTCACTCAATCCTTACTGCTCGCCATCTACCCTTCCTTCTCTCTTTGCCTCTCGAG
ATCTCCGTTTCCGCATTATTAACTTGGATCAGTTGATGGTCCGTATTCCATTCCCCCAGATTTCC
TACACTCAGGAAAACCATCGAAGATTCTGATACCTCGAGATGATTTAATGAGGATTTGCCATATT
AAAACTTGTTCTACGAATTCCTTTCATCTGCATCTTCATCCCTTG



Found at i:878309 original size:15 final size:15

Alignment explanation


    Indices: 878289--878318  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     878279 GAGATACGTT

                           
     878289 ATCAGATGTCACTGG
          1 ATCAGATGTCACTGG

                           
     878304 ATCAGATGTCACTGG
          1 ATCAGATGTCACTGG

     878319 GCCATTTCCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27


Consensus pattern (15 bp):   
ATCAGATGTCACTGG

Left flanking sequence: Indices 877789 -- 878288
AGGGGCAGAAGCAGAAGGGAAAGGCTAACTACCCTTTAATCCTTAAGAATGAGTTTCAGGCCTTG
CAGAGCCTACTACTTCTGGTTTCTCTCTCGGGGTTTTCGAAGGACTGAACCGATCGATAGGGAAT
TGGTTGTTAGAAAGTTAGATCGGTATAATTGGAATCGAATACCTATATTTCAGAAGTCTTAGCAA
GACGGGAAGTCCCTTGCTCGAAACCAGACCAAATCCTATGAACCTACCCACAGAAAAGCCCTTTA
TATACGATATTAATTATATACGATATTAATCCGCAAAGAAGGGATAGTAGATCAGCTCAATCGAT
TCTCCTCACTTGCTAGAACCAAATCAAATACGGAATTCCCAATCTCCTCGACTGTGAAAGATAGG
GCGCTACACTAGACTCGGACTCGGTTTCATCGTCTAAATAGTCAATGGACTCTGACAAGACTTTA
GAATAGGACTCAGGTTTACTTTTATTAAGGTGGTGGAGATACGTT


Right flanking sequence: Indices 878319 -- 878818
GCCATTTCCCGTTTCTTAACCCGTCTACCCTCACTCAATCCTTACTGCTCGCCATCTACCCTTCC
TTCTCTCTTTGCCTCTCGAGATCTCCGTTTCCGCATTATTAACTTGGATCAGTTGATGGTCCGTA
TTCCATTCCCCCAGATTTCCTACACTCAGGAAAACCATCGAAGATTCTGATACCTCGAGATGATT
TAATGAGGATTTGCCATATTAAAACTTGTTCTACGAATTCCTTTCATCTGCATCTTCATCCCTTG
TAGAAGGTGCAGGAGAGGGCGGTTACTACTCTCATCTTCAATCATCAATATTCAATTACTTCAAT
CATCAATATTCAATTAGATGGCGGTTCTTTCCTGAAACTAGCGGCTAGATAGGACGACTCGGAAG
GGATAGCTAGCTTTTCCTAAGCTTAATGCTTAATCGAATCCTGAGTTTCTTTGTCTCTCCTTATG
GGAAAAGACTGGCTTAGCTCGAGAACAATAGACAAAGCAACCAGA



Found at i:878644 original size:23 final size:23

Alignment explanation


    Indices: 878614--878659  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     878604 CTACTCTCAT

                                   
     878614 CTTCAATCATCAATATTCAATTA
          1 CTTCAATCATCAATATTCAATTA

                                   
     878637 CTTCAATCATCAATATTCAATTA
          1 CTTCAATCATCAATATTCAATTA

     878660 GATGGCGGTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39


Consensus pattern (23 bp):   
CTTCAATCATCAATATTCAATTA

Left flanking sequence: Indices 878114 -- 878613
TCTCCTCACTTGCTAGAACCAAATCAAATACGGAATTCCCAATCTCCTCGACTGTGAAAGATAGG
GCGCTACACTAGACTCGGACTCGGTTTCATCGTCTAAATAGTCAATGGACTCTGACAAGACTTTA
GAATAGGACTCAGGTTTACTTTTATTAAGGTGGTGGAGATACGTTATCAGATGTCACTGGATCAG
ATGTCACTGGGCCATTTCCCGTTTCTTAACCCGTCTACCCTCACTCAATCCTTACTGCTCGCCAT
CTACCCTTCCTTCTCTCTTTGCCTCTCGAGATCTCCGTTTCCGCATTATTAACTTGGATCAGTTG
ATGGTCCGTATTCCATTCCCCCAGATTTCCTACACTCAGGAAAACCATCGAAGATTCTGATACCT
CGAGATGATTTAATGAGGATTTGCCATATTAAAACTTGTTCTACGAATTCCTTTCATCTGCATCT
TCATCCCTTGTAGAAGGTGCAGGAGAGGGCGGTTACTACTCTCAT


Right flanking sequence: Indices 878660 -- 879159
GATGGCGGTTCTTTCCTGAAACTAGCGGCTAGATAGGACGACTCGGAAGGGATAGCTAGCTTTTC
CTAAGCTTAATGCTTAATCGAATCCTGAGTTTCTTTGTCTCTCCTTATGGGAAAAGACTGGCTTA
GCTCGAGAACAATAGACAAAGCAACCAGAAAGAAGGTAAGGCCAACAACTCGCTTTGTAGCAGTT
ACAAGCTCTTCAATTTAACAAGCAAGCAATTGACTTTGAACGCCTCTTCGATTCGATCGCTTAGC
CTTTTTATAATCCGTTTAGTCTTCGAATTTGGGCATGTATGTGCAGCTACGTGGTTTCCGCCTTA
TGTCGAGCTTTGTTTCGGTCGGGTTGCTTTCACAGATCGATCTACCTATTCACAGGAATGAAATG
CTAACTCTGACTCAGGTTTGCTACCTACTCAATCTCGAATTCACCGAGTAGACAGACACCTTTCG
AGAGTTGCTACCTAAATATAGGCGCTACTGGAAAGAGCAAAGAAG



Found at i:879212 original size:31 final size:31

Alignment explanation


    Indices: 879177--879238  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

     879167 CCTTCCACAG

                          *                
     879177 ATAGATAGAACAACTCCTCTATCCCATCAGC
          1 ATAGATAGAACAACCCCTCTATCCCATCAGC

                                           
     879208 ATAGATAGAACAACCCCTCTATCCCATCAGC
          1 ATAGATAGAACAACCCCTCTATCCCATCAGC

     879239 TAGGATTAAT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.35, C:0.34, G:0.10, T:0.21


Consensus pattern (31 bp):   
ATAGATAGAACAACCCCTCTATCCCATCAGC

Left flanking sequence: Indices 878677 -- 879176
GAAACTAGCGGCTAGATAGGACGACTCGGAAGGGATAGCTAGCTTTTCCTAAGCTTAATGCTTAA
TCGAATCCTGAGTTTCTTTGTCTCTCCTTATGGGAAAAGACTGGCTTAGCTCGAGAACAATAGAC
AAAGCAACCAGAAAGAAGGTAAGGCCAACAACTCGCTTTGTAGCAGTTACAAGCTCTTCAATTTA
ACAAGCAAGCAATTGACTTTGAACGCCTCTTCGATTCGATCGCTTAGCCTTTTTATAATCCGTTT
AGTCTTCGAATTTGGGCATGTATGTGCAGCTACGTGGTTTCCGCCTTATGTCGAGCTTTGTTTCG
GTCGGGTTGCTTTCACAGATCGATCTACCTATTCACAGGAATGAAATGCTAACTCTGACTCAGGT
TTGCTACCTACTCAATCTCGAATTCACCGAGTAGACAGACACCTTTCGAGAGTTGCTACCTAAAT
ATAGGCGCTACTGGAAAGAGCAAAGAAGGACATTCCCTTCCACAG


Right flanking sequence: Indices 879239 -- 879738
TAGGATTAATTAATGGCTCTAGATCGAGGTTAAAAGGGGCATGCAGCCTAAGTATTCAATAGGCT
CTGACCTCAGCTTAAATGAATCGATTCCATGAACTTGCCTAGAAACTGATTCTCATTCAACAAGA
AAGAGCTATCACAGCTTCTTCTATAGAGCGAGTGAGTCATACTAGAACGATTGGTTCATAGGTTC
TTGCAGCTACTTCGAGCTAACTCAAAAGCGAAGTAGCGTTACGAGATTCCTCGGCAAGGTGAGCT
ATTCCAGATACTGAATTTCCAGCTCGAGAATAATATGCCCTTTTGGAATAACAATCTGTACCCGA
TACCGTACTTATACCCCAACCTCAACCATAAAAGCAAATTAGGAAAGAGGAAATCCTGTAACTCT
AGCTTTAGCTCGGGGCGAATAGGTGTAGTAGCTCATAGAAAGACTAGCAAGATAAAGAGATAAGA
TTGGTGAAACTCTTTCTCGATAACTCTAGTGGAGTGGAGGGCTTA



Found at i:888642 original size:19 final size:19

Alignment explanation


    Indices: 888618--888656  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     888608 ATACCAACGA

                               
     888618 CGAACGGTAAGACCCCGTG
          1 CGAACGGTAAGACCCCGTG

                               
     888637 CGAACGGTAAGACCCCGTG
          1 CGAACGGTAAGACCCCGTG

             
     888656 C
          1 C

     888657 ACCTTAACTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.26, C:0.33, G:0.31, T:0.10


Consensus pattern (19 bp):   
CGAACGGTAAGACCCCGTG

Left flanking sequence: Indices 888118 -- 888617
TAGTTGGAAGAGAAAAGGAAGTCAAGTCAACAGCAGAAGAAGAGACACCAAGCAAGTGAACAAAA
AGGAACTCGCACGCAATCAATAACCGCGATCCGTCAATAGCGATAGCTTTTGGTCCCACTATTCC
GGCATTAAGGGGTGGAAAACGTAAGCAAGCGCCTGTGTTACAGCTTGAATGGCCTCATGAAGGGA
GAAAGGATGTTGCATCCAAGCCCCCTTGAAGACAGCATCAAAACTCTCGTGAGTCAGACAAGCAG
CTTCAAATTGAAAGGGACAAGAGGGGTTTGTCGAAATTAATTGAAATGCAAACCCGAGCGAACCT
TCCTTTAGATGCATAGCGAGTATTTGGATCAACCTTAATAGCTGTTCCAAGAGTCTTTCCCATGG
CTAGTAAAACTCTGTCACTGTAATACTGAACTGGCAATCCTGGGAACCTAACTCAAACTGAAGCG
TAATCTATGGTTGCATCAGACGCACTAAACTCAGGATACCAACGA


Right flanking sequence: Indices 888657 -- 889156
ACCTTAACTAACTATAGCTTTCTTCGCTTGGCGTGCGCGCGATCATGTGTCATCCACGGATTCAT
GCCGATCTTTCGGAGACAGATATTATATTAACATAGGAATAGCAACTATCTTGTCTTAAACCTAC
TGCTTTCACAGTATACCCAGTAGACTTTTTTTTTAGTGGGTGAAAATAGCTCCATGAGAATCTGT
CACAATAAATATATAGCCCTTATTAATACAAAGTCCTTGAACTCTCCTTGGCTAAGCAAAGAAAG
GTACATGGAAGAGACCGTATCCAAGCGAGGAAAACAAAAAAGGATCTGGATAATGATTGACTTTT
GGATCGCTAAGTCTAGTCTCATGGATAGACTAGCCACGGAGCCATGAGAACTTTATTCTTATCGG
AGAAAGAAACTTTTGATCGATTTCGGAAGACTAGTTGTTGTTAAAGGGTCAGACTAAGTCCTGAA
AGACCATATATTTCCCTAATGAAAGCTTCTACTTGTTGAAGCTTT



Found at i:889330 original size:16 final size:16

Alignment explanation


    Indices: 889306--889341  Score: 54
    Period size: 16  Copynumber: 2.2  Consensus size: 16

     889296 GAATGCAGGG

                *           
     889306 AATAGTTAATATGAAA
          1 AATACTTAATATGAAA

                           *
     889322 AATACTTAATATGAAT
          1 AATACTTAATATGAAA

                
     889338 AATA
          1 AATA

     889342 GTGAAATCCT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33


Consensus pattern (16 bp):   
AATACTTAATATGAAA

Left flanking sequence: Indices 888806 -- 889305
GTAGACTTTTTTTTTAGTGGGTGAAAATAGCTCCATGAGAATCTGTCACAATAAATATATAGCCC
TTATTAATACAAAGTCCTTGAACTCTCCTTGGCTAAGCAAAGAAAGGTACATGGAAGAGACCGTA
TCCAAGCGAGGAAAACAAAAAAGGATCTGGATAATGATTGACTTTTGGATCGCTAAGTCTAGTCT
CATGGATAGACTAGCCACGGAGCCATGAGAACTTTATTCTTATCGGAGAAAGAAACTTTTGATCG
ATTTCGGAAGACTAGTTGTTGTTAAAGGGTCAGACTAAGTCCTGAAAGACCATATATTTCCCTAA
TGAAAGCTTCTACTTGTTGAAGCTTTTCTTCCAAAAAGATGTTTTCCATCTTAAAAAATGAATTG
ATAACAGATCATTGCGGGGAATGATAAAGGAGTAGAGTAGCCGATCCCTTTCTTTGTCGCATGAT
AACCGATGGTTAACTCGTCAGGCTCATCATCTGAAGAATGCAGGG


Right flanking sequence: Indices 889342 -- 889841
GTGAAATCCTGTTCGCCATTATACCTACTTCTTAGCTACGCGGCCACGCTTGCGCTTGTTCGCCT
ATATTATAAGACACTTCGTTCCATTCTTAGCTATCGTATCGATCCGGGCTTGTCAGGGTCCGATG
GTTGAGACAACCAAATCAAGGGCAAAAGACTTTTCCTTCGTTCTATCCAAAATCCGATTCTAGTA
CCTTTTGGTTCCATCTTTTCTCCGCTCGTCTCAAAGTGTGTCTGACCGAGTTATTCCGCACTGCT
GTCTATCTACGATATTCTTTCTTTTGCTCGTTAGACTCTTCACCTATAAAAATGTACTCAGCTTT
CTAGAAAGCTCATTCTGATCTTCAATAATAGGTCCTTCTGCGGCCTGATCGCGGTGGTCTGAAAG
AAATTTTAATGTACGCCATTCTCTAAAGAGCTGATTCTACAATTTGACTGGCTCCGGAATAAATA
AATGAATCTATACGAATAAAGAACTCCTTTTGCTTAGTTTGTTAT



Found at i:893224 original size:23 final size:23

Alignment explanation


    Indices: 893194--893239  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     893184 GGACTTACCC

                                   
     893194 TGTCTCAGTTCATGTATAACTGG
          1 TGTCTCAGTTCATGTATAACTGG

                                   
     893217 TGTCTCAGTTCATGTATAACTGG
          1 TGTCTCAGTTCATGTATAACTGG

     893240 CACCTAGGGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39


Consensus pattern (23 bp):   
TGTCTCAGTTCATGTATAACTGG

Left flanking sequence: Indices 892694 -- 893193
TTCTCTTCATTCAAAAACCACAGCTTGGTAATTCTCTGTTGAAGGACGTTGAAATTAACCGATCT
ACCTAAAACTATAAAGATCACGGAGTAACGCCAAGGACGTCTCAACGATGCTTTGATTTCCGACG
AGAAATCCACACCTGGCTCTACAAGACCTCGCCCGATCCCGACATCTCTTCATCATCAGACCACT
CATCTTCAATCTATTTTCATAACATCTGATCTTATATGCTAACATCATCTTATTATTCTAATACA
TCAGCACTAGACTGAAAGTCAAAGAGAGAGTACTCTAATAGGAATAGCACTAACGGTCAGAAGGT
TAGCTCTATCAAACTATAGCATATGAAGTGGATGGGTACTGCAACATGCGGTTTGTATATTGTGA
AGGAGAAAGAACTAAGCAAAGCGGATAGGAGTACTCCAGCACTACCACCGGTTAGTGATTCAACC
ACGGCGATCAATGCTTTGGATTCAACCCTTCTTATGGACTTACCC


Right flanking sequence: Indices 893240 -- 893739
CACCTAGGGGGAACCCGGCCTTTCATCATAACCCTAACCAAAGGACTATTGTGCGAGATAAGACC
AGCTGTAACAACTGGAGGACGGGATAACATATCCGCTATCCCCTTTTAAGCACCTTTACCACACC
TTATAATAAGATGGAACATCTGCATAAATCCCATCCAATGAGCCTTTATGTGATTTCTGTAGTTT
GTAAGGCTGCGGTTGGCCGATGAGAATTATGCACAATCCTTTCTTCGCTCACTAAGTCATCTTTC
CGGAAAGAGAGAATCAGCTCTTTGTAGCGGAAGATCGGGTGTTCTCATACCCTTGCACCTTTTCC
TATCGTCGAGCATCTTTCGCGCCTTCACCCTTGACTGCATTCTCGGCAAAGAGAAAAGTTCTGAG
TTGCCCTACTTAACCGAGTTCCTACTACCGCTTTGAGGCTGGGGTATATGCCAGTTATGATATCC
CCAGTTTTCCAAACCCTTTTGTCGAGCTTCTAAAAGTTGTTCTCT



Found at i:896119 original size:21 final size:21

Alignment explanation


    Indices: 896093--896134  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     896083 TCGACTCAAT

                                 
     896093 TGAAGAAAGACCGTAAAAATA
          1 TGAAGAAAGACCGTAAAAATA

                                 
     896114 TGAAGAAAGACCGTAAAAATA
          1 TGAAGAAAGACCGTAAAAATA

     896135 GGCATCGAGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.57, C:0.10, G:0.19, T:0.14


Consensus pattern (21 bp):   
TGAAGAAAGACCGTAAAAATA

Left flanking sequence: Indices 895593 -- 896092
ACTCATCATAGGTTTACTCATCTCTTGAATCTCCTACTGAAATGAAATCAGATTCATTAGCGGAA
ATTGAGAAGTAAGGTTTTTCCGCGCTTTCCCTCTTTTCTTTCTTCAGGTTCTCGGTAATGAAATG
CGGATTATGTCTGAGATTCGGAGTTTGCCTTATCAGATGCATAAGGAGTTCTTGCTTCCGGGTAA
GGGTCTGAAAGAGCTCAAGCAGATTCTGAAAAGCAATTCAAGGAAACTGGAAACGAATAAGAGAA
CAGTCCTTAAACCCCAAGGTTGATAAAAGATTTAGCTGATGGTGGGTGTTCATTTGAATTAGATT
CTTCTGAATCTTTATCTTCCGGGTCTTCCCTTACCGAACTCCTAGCAATAGCTACTAAGCTAAGG
TCTCTCCTGCTAACTCTACTTCACTTTCTCTCCCAACTGCTTCTGCGGGATGACTTCTATGTCGA
TTCAGCTAAACCAAACCCAAAGATGGAATTCTCAATCGACTCAAT


Right flanking sequence: Indices 896135 -- 896634
GGCATCGAGTAAAAGGGCCTGTTCATTTAGGATTGAACTACATTTCGTCCGTAAGCTTTTGAGTT
TGCTTTCTCTGTTTGAGAGAGCCCCATACCTCATCCCAAAACAAGGAAATAGGATTCCTATTACT
CCGGTGCATATTCTTCTCGAGCAGATGCATAAAAGGAAGGAAAGTAAAAGGCAGAGTTAACTTCC
CCGGTTTCTAAAGGATTCATCTTCAAACTACTTTACTTGCTCTAGGTTTGCTGACGGGCTTCCAT
TGGCATTAGTTTAATTAGGAACTAAGGGTTCAGGTATAACAAATAAATGGTTTCCCACTCCACTC
GCAGCTAAGCCGGCATATGAGTTTATAGGTACTCCTGCCTCCGGGTTAGTAGGGTAAGAGGTCTT
TTCCCCCAGGTCCTAAACCAATTCCTTGTCTTAAGTGATTTAATAGAGACCGGAATTAATGATAA
CAATTCCGTAAGTGAATTTCATTGAAGTGAATCTGCCAAGTCAAT



Found at i:907882 original size:25 final size:25

Alignment explanation


    Indices: 907848--907897  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

     907838 GATAGATCTA

                                     
     907848 GATAATGGCTACTATTGTGTGCGAT
          1 GATAATGGCTACTATTGTGTGCGAT

                                     
     907873 GATAATGGCTACTATTGTGTGCGAT
          1 GATAATGGCTACTATTGTGTGCGAT

     907898 TTAGCTCTCG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36


Consensus pattern (25 bp):   
GATAATGGCTACTATTGTGTGCGAT

Left flanking sequence: Indices 907348 -- 907847
AACTTCTCCATTTACAAAGATAAGGCAAGGGCGAGGTTGCAGTTAGATAGTTGAGAATGAATGAG
GCTGCACCCTACCTAATTTTCTTCTCTCTACCGTAACCCTCTGCCGCTTTTCTGCCTCCTTCAAT
GGAGTCCTCGGATGCTGCTACAAAGGCTGTTGCTTCTCCTGTTTCAAAAACTTCTCCACCTGTTC
CCGATCCTACTAAGGGTTCCTATAGGGATAAGTTGATGCATGATCAGACCCCCTTTGTCGAGGAT
GACTCTATGTAGGAAGGGGAAATCTCTGACGACGGATATGACTCTGATGATGATCCTGTCATGGC
AAGGCAAGTAGGCCCTAGTATCCTCCTCACCAAGTAGTACAAAGGGCGCATCCGTTTTCCTTGGA
AATATGCTTTAATTATCAAGCTTCTGGGCCGTAATATTGGATATACATATTTGTGTACTCGTTTG
AAAGAGATATGGTCTATCAAAGGGTCTCTTCAGGTGATAGATCTA


Right flanking sequence: Indices 907898 -- 908397
TTAGCTCTCGCCAAGAATATGATTTTGTGCTTACTGGTGGACCTTGGTTAATAGCTGATCACTAT
CTAACCATACGCCGATGGATGCCTTATTTTAGATATCAGATGAGGCAACTATTGATAGAGTAGGA
GCTTGGATCCGTCTACCTTTGTTACCTATAGAATTTTTCGATGATTTAGATGCTTGTCCTCTAAA
GCAACCAGTACAAGAGCAGGTTCCTCCTCCTGGTGAAACCTCTCATGCCAACCCAAAGATAATTG
ATACCCGAGAACATGAGAATTCAATGTTTGTACCCTGGATGGTTGCGAAAAAACCTCAACGGCGA
AACTTTAATGCCAAGAAAAATTCAATTCCTGAGAAACCTAGTGTTCCATCGGCATCTCCTGATAA
TTTGCTCTAAAATCGGTTCCATTAATTCCATCATTTACTGCTCAAAAATCTAGTCCTACAATTGA
TGCTCACAAATCGGGTTCTTCGAGTGCTGCTGACCGTGCTACACT



Found at i:908764 original size:20 final size:20

Alignment explanation


    Indices: 908739--908778  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     908729 GGAGCTATAG

                                
     908739 AAAAAGATATTGTTATGCAA
          1 AAAAAGATATTGTTATGCAA

                                
     908759 AAAAAGATATTGTTATGCAA
          1 AAAAAGATATTGTTATGCAA

     908779 GATGATCCTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.50, C:0.05, G:0.15, T:0.30


Consensus pattern (20 bp):   
AAAAAGATATTGTTATGCAA

Left flanking sequence: Indices 908239 -- 908738
AAAATTCAATTCCTGAGAAACCTAGTGTTCCATCGGCATCTCCTGATAATTTGCTCTAAAATCGG
TTCCATTAATTCCATCATTTACTGCTCAAAAATCTAGTCCTACAATTGATGCTCACAAATCGGGT
TCTTCGAGTGCTGCTGACCGTGCTACACTTAAAACAAGCCTTCAAGCTGCAGCGGCTTTGGCCAA
TAAATCCAACCCCAAGGCTAGATCCACCTCAAACAAGACTCCCATAAATGTATCTCAATCATCTG
CCTCTCCCCTTGCTACCCCTGAGCCACAAATAGCCACCATTGATACCTCCCACATAGCTGGTATG
AAAGCCACTACCCTTTTACCCCAAAACCAACTAATATCTACCTATATTTCCTTTGCTTCTTCTAC
TGACCATGTAGAGTTTGTGCCGGATTCTCCTGTTACCACATCTCAACCTTCTCTCCACCCTTCCC
TTGGTAGTGAGGAGATCGGTATTGGGATAAATGGAGGAGCTATAG


Right flanking sequence: Indices 908779 -- 909278
GATGATCCTACTCCTCATGAAGAAGATTTCTCGGCTACAAAATATTGATTGTTCTTGAACCTGAT
TGGCTCCTAACCGCAGTCTATGGTAGCCCGGAAGCTCATGACAGGAAAGGACTATGGAACTCACT
TTCTACTGCAAGCAATCTCCATACACTACCTTGGATTGTATTAGGTGATTTTAATCAAGTTATTT
CCTCTGATGAAAAAATAGGTAGGAAAGGTATCAATTTACATAACTGTCAGCTCATGTTGGACTGT
TTGCGACATTTCAATCTAGTTGACTTGGAAACTTCTGGTCCCAAATTTACCTGGGCGAATAACAG
GGATGTCCGAAACTACACTCGTATTAAGCTGTATTGTGTGAAGAATAGCTGGGATTAGACTCTGT
TTTCTCTCCCTGATAAACAGGTTAAACTCTCGTCTGACTTGTCCTCTTGGAGTAAATCAGTTTTT
GGTGACATAGACAAAAGAAAGCGGAGCCTTTATCTAGGAAGAAAC



Found at i:914255 original size:25 final size:25

Alignment explanation


    Indices: 914234--914291  Score: 116
    Period size: 25  Copynumber: 2.3  Consensus size: 25

     914224 AAAGAACTCT

                                     
     914234 TTCTATTCGAAAGAAAACGAACAAC
          1 TTCTATTCGAAAGAAAACGAACAAC

                                     
     914259 TTCTATTCGAAAGAAAACGAACAAC
          1 TTCTATTCGAAAGAAAACGAACAAC

                    
     914284 TTCTATTC
          1 TTCTATTC

     914292 TCGGAGCCCA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   33  1.00

ACGTcount: A:0.43, C:0.21, G:0.10, T:0.26


Consensus pattern (25 bp):   
TTCTATTCGAAAGAAAACGAACAAC

Left flanking sequence: Indices 913734 -- 914233
ATGTTGTTTTCCGCCAACCACCTTTGTAGGTGAAGGGAGTCCTTCAGGCTGATAGTCTTGGTGTA
GCCTATCCTAGAGGCTTTAAGCTTTAGTTTGATTTCCTTCAGTTCAGGGTTTTACCAAAAAAAAA
GACCAATCTCGATGAAAAGAGAGGATTCGGGTTGATACGAGACCTTCGCCTTCTTCAAGTCTTCT
TTTTTGGGGATTAGGTTAAGATAGGGGTACGGAAAGAGAGGTCTTGCCAGAGCCTTGGTAAACAA
AAACCTACATAGCAGTTCCAATGCTACGCCTTTTTCCACTCGGCCATCTCTCCTATATAATCTTA
TGATTATGACCCAAAAACCGCAAGTGAATAGCAAGTCATTCATATTCTTGCAGTAAAGGTACGCC
CGCCCAATCCATTATAAATAGAAAACTTTTCGTCAAAGAAAGATCTTCCTTCGAGGCTCGAGGAA
AAAAAAACAATTCTTCTTGTTTCCCATTAAAAACAAAAGAACTCT


Right flanking sequence: Indices 914292 -- 914791
TCGGAGCCCACGGAGCGGTATATGAGGAATGGCTTTTTGGTCCCTTTCGTCCAGTGGTTAGGACA
TCGTCTTTTCATGTCGAAGACACGGGTTCGATAAGGGATAGGTACTTATTCTCGTCCGCTTTCAG
TTAGTGTTCATTGCTGAGTGATCGCTCTCAAAAGCAAGATGGGAATGGTCAAACTGAGGAATCGA
GATAGATGTCTGTCTCTGCTTCACCGGAAGGGTTTCCGCTTTCGCTGCCCAGAGACAGTCTAGCT
TTGTTCTTCACCCATGCTTATTATAACATTTGAATTTCTCAACCTTTGAATGATTAGTGGAATGC
CCCTATTTCTTTGTCTACGATTGATCAGTTGCCTATCCGGCATTTTTTTCGGACGTTTTCTAGGA
TCAGAAGGAAGCGCTATAATTACCACTCCTGAATTCTTTTTTCTTGTCTTCGTCTTCTGGATCGA
ACGAAAGTTGTGTATCGAACCCTCCCGCAAATGAAGGCCCTGCGC



Found at i:916601 original size:27 final size:27

Alignment explanation


    Indices: 916570--916623  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

     916560 TTCCAAAGTG

                                       
     916570 TCTATCTCTTCTTTACTTTCAAGTGAA
          1 TCTATCTCTTCTTTACTTTCAAGTGAA

                                       
     916597 TCTATCTCTTCTTTACTTTCAAGTGAA
          1 TCTATCTCTTCTTTACTTTCAAGTGAA

     916624 AAGTAGGGTG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48


Consensus pattern (27 bp):   
TCTATCTCTTCTTTACTTTCAAGTGAA

Left flanking sequence: Indices 916070 -- 916569
TATTCACACTAGCCTGGAAACATATGAACATAGGCTAATTGGGATATCCACCTAAGGGAAAAACG
GAATGGAACAGCCGATTAGGAGGTCTCAACGAGCCTTAACCTCAACCTATTAAGTAAGAAAGGTC
TTTTGAAAAGGGTCGAAGCTGCATCAACGACGGGACTGAGACTTTGAAGGCCGGCTTCTTACAGC
AAGGGAAGGGTATAAGATAAGCTCGAGAAGTCGTGACATTCTATCTCACCTTAACAGCACCTTCT
TTGGTCAGGAAGAGAATTCCAACGGGACAACGAATGGAAGGCCTACCACCTTTTTCAAGGTTGAG
CTTCTTCACAAAAAGGTAGTGTTTTTTTCATATTCTTATTGGTAAATAGCGTTTTGAAGCGAAGG
CGCATTATTGAACGAAAGAGATGGCGGGTCGGTCAATTGCAGGACCTGTCTTAACCACAAGTGCA
TTCGCTATTTTCTTTCATCCTCGATCACACCTTGATTCCAAAGTG


Right flanking sequence: Indices 916624 -- 917123
AAGTAGGGTGACAAAGGGTATACTTTCTTCTCTATGTAGCCGTCTCATCAATGAGCATAGATTGA
TATAGATGGCTTTTGTGCCGGTCAATCTCTATCCCATTCTTCAGGTATAGTTTTTTTTTGATTAC
AGATCGGCAGGTGATCTGTCCTTTCAAAAGGCCATTAGGCAAAAAAACAGTGATAAGATCTCAAA
AGAAAGAAGAGTATTCGAATCTGCTTCCCCTATGATACTTGGCACAAAGCTATGAGTCCTAAAGG
AGATTGGACAAGAAATCCGATCTCCACTCTCTCAAAAAAAGACGAAGGCTAAAAAAAATAGAATA
AACCTCACATATACATGCGCACAAGTTTTTTTACAAACGACTTCACGCTTGGAGCTTTGAAGAGG
CACTCAAGTGCTTGAAGAAGAAAGAGAAGCTCTCAATAGGATAAGGAGAAGATTCAGTCCCCACC
AAAGGACAAAGACAAGGTAGCAAGGCCTCGAAGACCAAAATTCTT



Found at i:917470 original size:23 final size:23

Alignment explanation


    Indices: 917440--917486  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     917430 GCAACGACAT

                                   
     917440 TGGGATAGGACTGGGTTCCCTAC
          1 TGGGATAGGACTGGGTTCCCTAC

                                   
     917463 TGGGATAGGACTGGGTTCCCTAC
          1 TGGGATAGGACTGGGTTCCCTAC

             
     917486 T
          1 T

     917487 CTCTGAAGCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.17, C:0.21, G:0.34, T:0.28


Consensus pattern (23 bp):   
TGGGATAGGACTGGGTTCCCTAC

Left flanking sequence: Indices 916940 -- 917439
AATAGAATAAACCTCACATATACATGCGCACAAGTTTTTTTACAAACGACTTCACGCTTGGAGCT
TTGAAGAGGCACTCAAGTGCTTGAAGAAGAAAGAGAAGCTCTCAATAGGATAAGGAGAAGATTCA
GTCCCCACCAAAGGACAAAGACAAGGTAGCAAGGCCTCGAAGACCAAAATTCTTGCATCTTCTTA
CCTATTCTTCTTTTCATTTTTTTTGAATGTAAAGATCTCACTGATCTTAGAATCAAATGTCTTCT
CCTATAGTATATGTAATTAACGAGAAAGCCGAGATACTTCCCAAGAGTGTGTAACCCACCACCAT
TTTAATAAAGACTCTAAAAAAGGGTAGATTGTTGTGATCACTTTTCTTGTGTAAATCTTTATTTC
ATACTCGAAATTTTCTTTCACAAATACGGGGAAGAAAGCAAAAAGAATTCAAACATATAAATTTA
CCAGTTACGACGAGGTGTACTTGCTGGAACCTCGAGCAACGACAT


Right flanking sequence: Indices 917487 -- 917986
CTCTGAAGCCAAATTATGAGCGGGCAAGTTCAATGGAAGGGGCACTTCCGCACTAGGAGATCTCC
GTCTTATATCGTCGGCCTCCCAGAATGGACGAAGCGGATTCAGTCTATATAATAGAATCATTGAG
AGACTTTGGATAAGGCTGGCATTTATGATGCTGTCCGAATCGCGCAAGAGTATTAATTACCAAAA
GGACGCAAACATTTATAGGGGCGCTTGTGAGTAGTGGAGCTGGGTAAGGCCTACATTTGAAGAAA
AAAACCTTGTGGGACCTGAAGAAAATCGACAGCCTTCCTATTTACAGCCAAGTTTACGACGTTTT
GAAAAATCCTGGGAACGTCAAATTGTACGGCTTAGACGAGATTTCAAAAGAGAAGTACCATTCAG
AGTGTGTCCGGGAACTTTTCGCGAAGTACCAACGCTTGGCGCTTCGTAATCAATATACAAAAGTT
GACCATCATCTATGGGTAATTTCTTAAAGAGTGAAATTGAGAGAC



Found at i:925757 original size:25 final size:25

Alignment explanation


    Indices: 925723--925772  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

     925713 GAGAAACATT

                                     
     925723 AGGGGATACAAAAGGTTTAGATTTC
          1 AGGGGATACAAAAGGTTTAGATTTC

                                     
     925748 AGGGGATACAAAAGGTTTAGATTTC
          1 AGGGGATACAAAAGGTTTAGATTTC

     925773 GGCAAGCTAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28


Consensus pattern (25 bp):   
AGGGGATACAAAAGGTTTAGATTTC

Left flanking sequence: Indices 925223 -- 925722
GAGAATCCAGAAGATATTGATTTTTAATAACCTCACAAGCTAGGGATTGTTTGTCAGACAAAATC
TCCCAACCTACCTTAGCAAGTAGTGCTAAATTTTCAGAATGAGCAGAACGAATACCAAGACCACC
CCAAACTCTAGGGGAGGAAACCTTTTCCCAGTGCACCAGATGATTTCGGCGGTAGTCCTCTGATC
CCCCTCACAAGAAGTTTCTTACAATCCTATCCAACTGCGAACATATAAAAGGAGGTAATAGGATC
GACTGCATAGAATAAACCAGGATTGCATGAAGCACAGATTGAGCAAGAGTTCGACGCCCTAGATA
AGCAGTGACTTTTCCAGCTACACAGTTTATTTCGAACCTTTTCAACAATACCCAGATACAGATCC
CGTGAGCACCGTTTATGGATAATGGGGACCCCCAGATAACGCCCCAATTCCTCAGTTAGTGGGAT
ACCACAAGAAGAACTCAAGATAGCTGCTTGTCGTCGAGAAACATT


Right flanking sequence: Indices 925773 -- 926272
GGCAAGCTAAGGGTCAAACCATAGGCAGCAGCAAAAGTATTCAAACAACCCATTATTTGTTCAAT
TTGACTAGTATCCGCTTGAGCAAACAGCATAAGATCATCTGCGAAGAAAAGATGGGAGAGAGTAG
GACCCATGAAAGAGCTGAGTCGCGCAGAAGAGGCTTCCAAATCTCCTACTTCCACAAGAAATAGT
AATCTGAAGCGATATGCCGATATAATAAAGCATGTTCTTCTATCAACTCGGATTCTAGCTAGACC
GAATGAGACATCCCTTTTTTACAGAACTGGGACAGAAGCCAGATTCAAATGCTAGGATTCCTTGC
CTTGAGCTTAGAGGGTAAGAAGTAGACCGCCATTCATTACGAAGGGGATCATTCCTTGAGGTATA
GTTCGGTAAGGGTAAAGGTAGAGAGGGTGTCATTGGCTATGGCGATTGCGGTAGCAGCTTTGCCT
TCCTATTCACTTGCATTCGATTCATTAGATAATTAATATAAGAAA



Found at i:927718 original size:24 final size:24

Alignment explanation


    Indices: 927686--927734  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     927676 TTAAACTCCA

                                    
     927686 GGGCTAGAAGCAGATGAAAGAAAT
          1 GGGCTAGAAGCAGATGAAAGAAAT

                                    
     927710 GGGCTAGAAGCAGATGAAAGAAAT
          1 GGGCTAGAAGCAGATGAAAGAAAT

             
     927734 G
          1 G

     927735 CGTGGACGTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.45, C:0.08, G:0.35, T:0.12


Consensus pattern (24 bp):   
GGGCTAGAAGCAGATGAAAGAAAT

Left flanking sequence: Indices 927186 -- 927685
CAACTCACTTGTCTGCAACCTTTAGAAATAGAAGAAAAGAAATAGGCTCTGCAAGACCTGTTGAC
TTTCTTTGTTGTGAAAGTTGAAAGGGAAAAATCAGTGAATCAATGAAGAAGGTATTACGATAGGA
CAAGTTGGGTTGGCTCGTATGCCAGTTCGAATCTTAGCGCTAGCAAGAACAAAGAACTACTCCGA
CTGTTCTGGTGAAGCAAGCGTAACCTTCCCTTTCTTTACTTCGAGCTATTAGTTATTTCCCCATT
CCTTTCCTTTGCTCTTTCCCTGACTTCCGAATATGCATCTGCTTGAGCAAATAGAAGAGTAAGAG
CCATAGATTATTCCACCAATTTCGAATAGTTGGATAGGGCTGAGTGAGGCGCTGCCCTGGGAACA
TGACCAATGGTAAAGTATAGAAGAAGTACAGCTATGTATTGACGAGCTGGCCTGGCATTAGCCTA
CTTTCTCTTTTGAAGTACGCGTTTACAGTCCTTAATTAAACTCCA


Right flanking sequence: Indices 927735 -- 928234
CGTGGACGTAGGGAACTAAGAAGCACCCAAGGAGAGACAAAAGGATTCCATAAGCATTTGTATTG
GTTTAGCAAGGAGTGTTAGATTAGACTGGTAGCTGTTCTGAGAGTTCAGAGGTTTCTTTCTTTCA
AAGAATTTCAAGTGAAACTATCTGTGCATTGGGCTGCGCTCCTAATAAGACCTTAAATCAATCTA
TCGAGGAGGTCTATTTCACTAGGCAAATCAGGGATTTCGCGGAGCTAGCTACTAATTATGAGCTT
TAGGGATGTTCATACCAACATTGCTTAGAAGGCCGGATTACACAACCAGAGAGTTCAAATGAACT
TAACCCGGATTCTGAAACTAGAAAGTCAGCTACAGAAGAAGGGGTTGTTGGTGTTGGTGAACGGG
ACGAAGCCTGTAGCTCTTAAAGAAAGGAGTTAGCTGCGGAGTCAATAGCTGTCGAGTTGGGTGAC
CATTTACCAATGGCACCTGCTTTCTTGCTTTACCCGAAAACCTTA



Found at i:933958 original size:21 final size:22

Alignment explanation


    Indices: 933935--933978  Score: 70
    Period size: 24  Copynumber: 1.9  Consensus size: 22

     933925 TGGGAAGAAG

                                   
     933935 AATATTAGCATTATCAGTGTGAA
          1 AATATTAGCATTATCAGTGTG-A

                                 
     933958 TAATATTAGCATTATCAGTGT
          1 -AATATTAGCATTATCAGTGT

     933979 ATGGAATTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39


Consensus pattern (22 bp):   
AATATTAGCATTATCAGTGTGA

Left flanking sequence: Indices 933435 -- 933934
ACTTGCCTTGTTGGTTGAAATTTTTGAGCCACATATGCAGTGTGCACTGCAATTTCAGTTGAGTT
TTGCCGTTGAAGAAAGGCTTCATATTCAGTCATTTTATCCAGCAGCTCCTCAAAAGATATTTGAC
TCTCACGAGCCCTGATGCCAGCTGCAATCTCTTTTAACTCGGGGCCAATGCCATTGAGTATATGT
ATCACTCAATCATCCTCTTGGACAGGTGAGTTGATGAGAGCCAACTCATCTGCAGTTTTCCGAAT
AGACTGGAAATAATCTTGCACCGATTTGGAGCCTTTAGGTTGGAGAAGCCTCTCTCGCAACTGCA
TCATGCGAGACCTGGACCGATTCGCATACATGTTTTTGATTTTGTCCCATGCACTCTTCGAAGAT
GTGCAAGCAGCAAAGAAGGGAACTACAGTCTCTGTAGCCGAGGCTATGATTCCATGTAATAGTAA
TTGATCCTGTTGGATCCAGTGATCATATGCTGGATTGGGAAGAAG


Right flanking sequence: Indices 933979 -- 934478
ATGGAATTTGGGATGGAGGACAGACCTTTGTTCCATCGATGTAGCCTCTAAGGCGATGACCAGTT
AACAGAGAGGTGAACTGCGCTCTCCAGGATGGGAAATTCTGCGGACTCAACTTGATAGGAAGCTG
CGCTGCAGCATTGATGGTGATGAGTGAGTTGCGGATCTATTTCATAAATATCGTATATAAAGTAA
TCTCTTCAGATGAATGCAATTGTCTATCTCTATGAAACTCGATTGTAGCTAGTAAATCGAATTCT
CAATCTGAAAAGTAGCCTATATCCCTTAATATCAGTACATGTTTCGGGTTCTTTTCGTACTTGGA
CTTGATTGAGTACAGGTAGTAGTAGTGGGTCGCTATCTCCAGGCTCGCTTCGTAGACTTCATGAG
CAAAGAATAGATATTACTGACAATCAGGTGCCAATAAGTTTGCTGTCCTGTCTCTTACTGTAGGT
AGTAGGTCCCCGCTCTTTTCTTTACGATAAGCGGATAGATTTTCT



Found at i:936519 original size:26 final size:26

Alignment explanation


    Indices: 936490--936541  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

     936480 GACTGAGACC

                                      
     936490 CGGGAAAAATGCTTCTTTTTCACATG
          1 CGGGAAAAATGCTTCTTTTTCACATG

                                      
     936516 CGGGAAAAATGCTTCTTTTTCACATG
          1 CGGGAAAAATGCTTCTTTTTCACATG

     936542 AATATTCAAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35


Consensus pattern (26 bp):   
CGGGAAAAATGCTTCTTTTTCACATG

Left flanking sequence: Indices 935990 -- 936489
TTTTTTCTAATTGTGCATTCCTGGGAAGAGGAAGAAGCAGATAGAGCAAAGGCCCCCTTTCCGTC
CGCTCTTCCCGAAGTGAGCAAATTGCATGTAGAGATCCGTAGGGGCTTATAGTTTAATTGGTTGA
AACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCTTCTCTT
CACCCGGCCTAAACGCTTCCTGAGACTCAACCCTACTTCGTCTTCGCCCTACAGCCTTTCCTGTA
TTCAGCTCATATTAACAATTCTTACTTCACGAGAGAGAGACTCACTATTGAAGGACGGGAGAGAT
ACCTAAACTAGAAGCTTTGTCGCGATCATTGACTTTCTATCATAGGGGTGTTCAGTGCCGTAGGT
CAGAAAAGGACTGAGAGATGAGAAGGCGTATAGAAGCCCCATTTTCAGATCTTTCTTTGGTCGAG
TAATCAACTAACTCTCAAGGATTGCGAATACGCTTGACTGAGACC


Right flanking sequence: Indices 936542 -- 937041
AATATTCAATTGCTCCCGAGCCTGCGATCAAGTCGAAAACTCATCCTATAGCAATGCCATCTGAC
CCATCTGTTCAACCCCCACAACCGGATATTTTCATTCTGTATTTCAGGCCCCCTTCTGAAATAGA
TCTTTAGTCCGCTTTGAATCAATCTAACTATCCTCGCTCGACTTTGAGTAGACCACAGGCGGGTC
GTATAGAAGCCAGCTAGAGCACAATCTTTCTCCTGTCGGATAGAAGCTTTTCAAAGGATTCAGAG
GTACGACGAAGATGCCGAACTACGACTTTCATTGAGTTACGTAACTACGACTTTCATTGATCCTT
TCTTATGAAATGTAAGATCAGGGCTTATTCTTTTGTATAAATGGGGATTTTCTTTCTGGTACTCG
CCCCGTACTTGAGACTCTTTCTAGGCTTTACTAAACCTATCGAGGTTACGAGAAGACGAATTTTG
ACTTTTTTTCTTTATTTGAAAGGAGCCTTCCTTCTGATATTACTA



Found at i:937215 original size:16 final size:17

Alignment explanation


    Indices: 937183--937219  Score: 58
    Period size: 16  Copynumber: 2.2  Consensus size: 17

     937173 GGGAGCACCC

                             
     937183 CCAACATGAGATGATGT
          1 CCAACATGAGATGATGT

                 *           
     937200 CCAACGTGAG-TGATGT
          1 CCAACATGAGATGATGT

                
     937216 CCAA
          1 CCAA

     937220 TGCCGATTGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  16   10  0.53
  17    9  0.47

ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22


Consensus pattern (17 bp):   
CCAACATGAGATGATGT

Left flanking sequence: Indices 936683 -- 937182
CTTTGAATCAATCTAACTATCCTCGCTCGACTTTGAGTAGACCACAGGCGGGTCGTATAGAAGCC
AGCTAGAGCACAATCTTTCTCCTGTCGGATAGAAGCTTTTCAAAGGATTCAGAGGTACGACGAAG
ATGCCGAACTACGACTTTCATTGAGTTACGTAACTACGACTTTCATTGATCCTTTCTTATGAAAT
GTAAGATCAGGGCTTATTCTTTTGTATAAATGGGGATTTTCTTTCTGGTACTCGCCCCGTACTTG
AGACTCTTTCTAGGCTTTACTAAACCTATCGAGGTTACGAGAAGACGAATTTTGACTTTTTTTCT
TTATTTGAAAGGAGCCTTCCTTCTGATATTACTAGCTTGCTAACTAGAACAATTCCTGACGTGAG
CTACTCAGACGGGACTGAAACCAGCCTAAAAGCAAAGATCAGAAGTGGCCTATTCATTTCCCAAT
AGATCAGTATATCGCCCCTATCCTGAGGAAGGCACGGGAGCACCC


Right flanking sequence: Indices 937220 -- 937719
TGCCGATTGAGCAGCCTTCGCTGTGGTCTTAGAGTCCGATACCCTATGTCTTTAGAGGCATTTAT
TTTAAATAAAGCCCTAATCTTTCCTAAGAATTAGGTAAACAGCGGAGGTCTTGCAGAGCCCCTAG
CGATTAGTCATATGAAGAGTATGACGAGATGAGCTGCGTAGCATAGCAGCTTTGAGGCGTTCACG
GCTCGACTAGAAGGAGAGGGGAGGAGAGGGGAGGAGAGGCTCGACTAGAAGGAGAGGGGAGGAGA
GGGGAGGAGAGGTGAGCCAAAGGACGCTTCGAACGAAGTCTTTTCTTTATGCAATCCTGACTTTC
TTGTAAAACCTGGGTAATCTTATCTATCGCTCTTTCAAGAACCGCTTTTTAGGCTTATTTTCTTT
GTTGTTCTTATTGCGTTCTTATTTATCAGATTGAGAATTCGATTTATTAACGGAAATCGAGAAGT
AAGGTATCACCGTAAGTAAGGCGAATACGAATCTGTCGCCTTGAT



Found at i:937441 original size:10 final size:10

Alignment explanation


    Indices: 937426--937491  Score: 60
    Period size: 10  Copynumber: 5.8  Consensus size: 10

     937416 CTCGACTAGA

                      
     937426 AGGAGAGGGG
          1 AGGAGAGGGG

                      
     937436 AGGAGAGGGG
          1 AGGAGAGGGG

                             
     937446 AGGAGAGGCTCGACTAG
          1 AGGAGAGG---G----G

                       
     937463 AAGGAGAGGGG
          1 -AGGAGAGGGG

                      
     937474 AGGAGAGGGG
          1 AGGAGAGGGG

                    
     937484 AGGAGAGG
          1 AGGAGAGG

     937492 TGAGCCAAAG


Statistics
Matches: 48,  Mismatches: 0, Indels: 16
        0.75            0.00        0.25

Matches are distributed among these distances:
  10   36  0.75
  11    1  0.02
  13    1  0.02
  15    1  0.02
  17    1  0.02
  18    8  0.17

ACGTcount: A:0.32, C:0.05, G:0.61, T:0.03


Consensus pattern (10 bp):   
AGGAGAGGGG

Left flanking sequence: Indices 936926 -- 937425
TACTCGCCCCGTACTTGAGACTCTTTCTAGGCTTTACTAAACCTATCGAGGTTACGAGAAGACGA
ATTTTGACTTTTTTTCTTTATTTGAAAGGAGCCTTCCTTCTGATATTACTAGCTTGCTAACTAGA
ACAATTCCTGACGTGAGCTACTCAGACGGGACTGAAACCAGCCTAAAAGCAAAGATCAGAAGTGG
CCTATTCATTTCCCAATAGATCAGTATATCGCCCCTATCCTGAGGAAGGCACGGGAGCACCCCCA
ACATGAGATGATGTCCAACGTGAGTGATGTCCAATGCCGATTGAGCAGCCTTCGCTGTGGTCTTA
GAGTCCGATACCCTATGTCTTTAGAGGCATTTATTTTAAATAAAGCCCTAATCTTTCCTAAGAAT
TAGGTAAACAGCGGAGGTCTTGCAGAGCCCCTAGCGATTAGTCATATGAAGAGTATGACGAGATG
AGCTGCGTAGCATAGCAGCTTTGAGGCGTTCACGGCTCGACTAGA


Right flanking sequence: Indices 937492 -- 937991
TGAGCCAAAGGACGCTTCGAACGAAGTCTTTTCTTTATGCAATCCTGACTTTCTTGTAAAACCTG
GGTAATCTTATCTATCGCTCTTTCAAGAACCGCTTTTTAGGCTTATTTTCTTTGTTGTTCTTATT
GCGTTCTTATTTATCAGATTGAGAATTCGATTTATTAACGGAAATCGAGAAGTAAGGTATCACCG
TAAGTAAGGCGAATACGAATCTGTCGCCTTGATCTAGTTTCATCAATCAGTGTACGACTCAGAAA
GAATCGTCTTATCAATAACAACTCGAAGTGCTTATTTATGGGAGAGGAGAGTTTGGGTACGAAGT
AGCTCGACCTAAGAGACAAAAGAAGAGGCCTTTCCTACGAATGTGAATCTGCCTTCGTCCTAGTT
CGGTTCTTAGCCCGGCTTGCAAGAAGCCCTTCCATCTAAATTCTAAATGGAAAAAATGAGGACTT
TTGACCCTATTGTTTTACACTCAAGTCCGGAATACAGTTCAGACT



Found at i:937465 original size:38 final size:38

Alignment explanation


    Indices: 937414--937491  Score: 156
    Period size: 38  Copynumber: 2.1  Consensus size: 38

     937404 AGGCGTTCAC

                                                  
     937414 GGCTCGACTAGAAGGAGAGGGGAGGAGAGGGGAGGAGA
          1 GGCTCGACTAGAAGGAGAGGGGAGGAGAGGGGAGGAGA

                                                  
     937452 GGCTCGACTAGAAGGAGAGGGGAGGAGAGGGGAGGAGA
          1 GGCTCGACTAGAAGGAGAGGGGAGGAGAGGGGAGGAGA

              
     937490 GG
          1 GG

     937492 TGAGCCAAAG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  38   40  1.00

ACGTcount: A:0.31, C:0.08, G:0.56, T:0.05


Consensus pattern (38 bp):   
GGCTCGACTAGAAGGAGAGGGGAGGAGAGGGGAGGAGA

Left flanking sequence: Indices 936914 -- 937413
TTTTCTTTCTGGTACTCGCCCCGTACTTGAGACTCTTTCTAGGCTTTACTAAACCTATCGAGGTT
ACGAGAAGACGAATTTTGACTTTTTTTCTTTATTTGAAAGGAGCCTTCCTTCTGATATTACTAGC
TTGCTAACTAGAACAATTCCTGACGTGAGCTACTCAGACGGGACTGAAACCAGCCTAAAAGCAAA
GATCAGAAGTGGCCTATTCATTTCCCAATAGATCAGTATATCGCCCCTATCCTGAGGAAGGCACG
GGAGCACCCCCAACATGAGATGATGTCCAACGTGAGTGATGTCCAATGCCGATTGAGCAGCCTTC
GCTGTGGTCTTAGAGTCCGATACCCTATGTCTTTAGAGGCATTTATTTTAAATAAAGCCCTAATC
TTTCCTAAGAATTAGGTAAACAGCGGAGGTCTTGCAGAGCCCCTAGCGATTAGTCATATGAAGAG
TATGACGAGATGAGCTGCGTAGCATAGCAGCTTTGAGGCGTTCAC


Right flanking sequence: Indices 937492 -- 937991
TGAGCCAAAGGACGCTTCGAACGAAGTCTTTTCTTTATGCAATCCTGACTTTCTTGTAAAACCTG
GGTAATCTTATCTATCGCTCTTTCAAGAACCGCTTTTTAGGCTTATTTTCTTTGTTGTTCTTATT
GCGTTCTTATTTATCAGATTGAGAATTCGATTTATTAACGGAAATCGAGAAGTAAGGTATCACCG
TAAGTAAGGCGAATACGAATCTGTCGCCTTGATCTAGTTTCATCAATCAGTGTACGACTCAGAAA
GAATCGTCTTATCAATAACAACTCGAAGTGCTTATTTATGGGAGAGGAGAGTTTGGGTACGAAGT
AGCTCGACCTAAGAGACAAAAGAAGAGGCCTTTCCTACGAATGTGAATCTGCCTTCGTCCTAGTT
CGGTTCTTAGCCCGGCTTGCAAGAAGCCCTTCCATCTAAATTCTAAATGGAAAAAATGAGGACTT
TTGACCCTATTGTTTTACACTCAAGTCCGGAATACAGTTCAGACT



Found at i:941836 original size:24 final size:24

Alignment explanation


    Indices: 941808--941855  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     941798 CAAAGCATAG

                                    
     941808 ACTTTTTTCTACTCAACTGTTAGA
          1 ACTTTTTTCTACTCAACTGTTAGA

                                    
     941832 ACTTTTTTCTACTCAACTGTTAGA
          1 ACTTTTTTCTACTCAACTGTTAGA

     941856 TAAGAAACTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46


Consensus pattern (24 bp):   
ACTTTTTTCTACTCAACTGTTAGA

Left flanking sequence: Indices 941308 -- 941807
CTGTAACTGAGGTAGGACTATTTAAGTTCGATTCCCTTTCCTCTTAAGTTCGATTCCTAGTTGAA
GCAGAGCCTCAACCCAAAACAAAAGGCAGGCAAGCTACTGCGTTCCTCGAAAGCCCGTCTCTCTC
CATCTCTTCTCTTTGTTTTCGCGTACTCCTCTGTCTCTTTCCTCTGTCCTTTGTCCTTCTCTTCT
CCTCCGAGCAGTAGCAGCAGTGGTAGAGTCGGTAATTCAATTGGGATAGTAGGGTCGGGTTAGCA
CTCTCTATCGAAAGATAGACTCGATGGACTTTCAAAAGAATGATTTCCCGAAAATAAATAAGCAG
TTTGAGCTATTTAATAAGAAATTGACGTATAAAGAGGAATTCAAGAAGCTGCGATTAGAGTCTAA
ACTCTTGTTGTCGTAGAATTCGTCTTACTCTTTGAACTCTTTCAGACTCCTCGCCTGAAGTTATA
AAGATCACTTTTGGGGCTGAAGATAGATCTGAATACAAAGCATAG


Right flanking sequence: Indices 941856 -- 942355
TAAGAAACTCTAGCCATTATTTCTAGTACTTGAGATGCGAAATCTCTTTCGACTACTTCTCCCTC
GGGCCGAAGTCTATCTGATCCAGGGAAGAGATTCTACCACCCCTTTTATAGCTAGAAAGCAGATT
CGATTCATAAAAGGAAAGAGAAGAGAACAGTCCTGAAAGAACCGAAAGGACTAGAATCAAGGATT
GAGTGAGGGTATACCTATCCAAGCTGGGTTAAGAAACGTGAAATGACATCTGATAAGGAAGACCG
ACCACGAGAAGCCCAACCATAAAGTTCAAATGCAAATTCTTAAGCCAAGTAGTTCGTCTAAGCGA
AAGCAATTAGGGATCTGATTCGCCTCCGACTCAATCTCTTAACTCACTTTTAGCTGTTCACTTTG
AGTCTGCTATAGCAAGTCCTCATTTTTAACGATTTATTTTGAGATTTTTTAGTGAATTTGACTTG
ATAGCTTCAAAGACGGGAAAAGATTCAACGGTTAGATGCGTCTGC



Found at i:945737 original size:21 final size:21

Alignment explanation


    Indices: 945711--945753  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     945701 ATGAAAGCCC

                                 
     945711 AAAAGCCTATCTATCGGTTTT
          1 AAAAGCCTATCTATCGGTTTT

                                 
     945732 AAAAGCCTATCTATCGGTTTT
          1 AAAAGCCTATCTATCGGTTTT

             
     945753 A
          1 A

     945754 CTGTCTCTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37


Consensus pattern (21 bp):   
AAAAGCCTATCTATCGGTTTT

Left flanking sequence: Indices 945211 -- 945710
TACTATTGGTCTAGGAGGCTTAGCATGAATGAACTTGGAGCATTCGGCAACTCGACGAAACTACA
CGTACTCCACTCGGTCTCTGGCTACATGGTCAGTCGTTACTAAATCCACAATCCACCAAGGATTG
GCTCAACGAGTACAACTGTACTAGACTTGTAACCTATGTGTAAAGAAGTGGGAATAAGTGGCACA
TTTTCTGCCCTTTTAGTAACCAGCTCTGCTACGCGACATGTAGAGCAGCTAGCCAACCAAGTATG
TTGGAAGTGGGAGTGATATCATCCATTATAACACCACAGTTTTCAACCTATTGACAGTCACTTTT
TAGCAAACCATTTCTTTGATCCCTATCATATTGTCGAGAACGAAAGCCCGTAGCCAAGACTGACT
TCTTCCCTTTCCCTACGCTCATGTCTCTTCTGAAGCAAAGGAGAAACTAAATCTTTTAGAAACCT
TGGTTTTAGTTAAGTACTTGATTTTGAGTCAAAGTATGAAAGCCC


Right flanking sequence: Indices 945754 -- 946253
CTGTCTCTTGGGTAATAGTCAGCACTTCTGTTTAGCTTTCCTACTGCTAAGAAAGGTGATACTAG
TAAGAAGGGGCAGGGAGTAAAACCAAAAGAGCGAGTAGTAGGTCATATCCCTTTTTTGCTGCCCT
TGAGCCTGTATTCCCACAGTCGTCGTAGTCGTTGTAGTCAATAGCTCGGTCAAAGGTTTTTTTGG
CGTTGCGTATCAAATTGTTCCGATCTGAGTCCGTGCCAGCCTCTGATGAGTGGTCCGAACCTACC
GCTTTTATGGTTCTGCCAAGGTAGAATCGTTCTGACGTAATCTAAGTATCCGCTCCGAAGCGAAA
GGAATGCCAAAGTTTAAGCTTAAACCGATGATGTTAACTGTCGATGCTGATTCTGAAGCCTGTAA
AAAAAAGATTTCCATTTTCCTATTCGAAATAGAAAGAAGTGTTTCCGAACAATCTCTGATGAGCT
GACCCTATGCTGAGGCTGTCGACTTAACTGCGCCGAATCTGGAGG



Found at i:948223 original size:20 final size:20

Alignment explanation


    Indices: 948198--948235  Score: 76
    Period size: 20  Copynumber: 1.9  Consensus size: 20

     948188 CCTACTTCGA

                                
     948198 CTATGGAATTTCGTCCTAGC
          1 CTATGGAATTTCGTCCTAGC

                              
     948218 CTATGGAATTTCGTCCTA
          1 CTATGGAATTTCGTCCTA

     948236 TATTGAGGAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37


Consensus pattern (20 bp):   
CTATGGAATTTCGTCCTAGC

Left flanking sequence: Indices 947698 -- 948197
GAGTCTAGTAGTAGTTCTCATCTTAAAAGTCTTGGGCTGAGGACTGAGCGCTATATTGAGGAAAA
CAACCTATTCTTGGAAAGACCCCGCCTAATTCCCTTTGTAAAAGGGGGATTGACTAACGAAAGAA
AGAAAAACCCGAAAACTAAAGATAGGGGAAGAACTGCACTTAACTTGACCCAAGGCCTACCAGTA
TCCGGTTTGCCTTTACCTTGCACGAATGGGGCTTTCTCTCCTTGTATGCTATGAAAATATGTCTA
AACCGAGACCTATACCCGAATCGAGCATCCAGATCTTTATTATATGAAATTCGTAATTCCTATTT
TTCAAGGCAGAAGGTAAAGCTTCCCACCAGCTTCCCCATTCCGCTTAACGATAGGCTTTGAAGCT
GAGTCGTACAAATGAGATATATTTGATTTAAGATTTGAAGGAGGGTGTGCTTTAGCACGGGAAAA
GGTTAATTGATCCTCTTCGATAACTCCCATCATGCCCTACTTCGA


Right flanking sequence: Indices 948236 -- 948735
TATTGAGGAGGAATCGAATCCCTTTGCGCTGGCTGCCATACTGCCGAGGTGTCACTTGCTAGCCG
TACGGGGGGCTACCCCATATGCGGGGGATCAGTAAAGCATGGAGTCGAAGAAGGTTGACCGCCTC
GTTTGGATCACCGGTACGAGTAGGGATGTCGGTAGAAGAGCGTTGAAGAATTTAGATCATAAAAA
TACGAATCTTGGAATTCAAAGAATTTGGATTATGCCCCAGCGCTTCTATGACCGTTCGTGAGAGT
TAGTCCGACAAGAGCTCTAACAAAACAACAGAAAAGTCAAGTGCTATTCCGTGCACAATCTATAC
AAAGGCTTGTGCGCGAGAGGAACTGCCATCAAAGGAAAAAAGTGAACAACCAGCTTTCACCCCAG
AGGCAGACAAGGAATGATCCGCTTCTTAATGAATGTGGGCACGGGATTGATTATTTCTTTTTTAT
GGTTCTGCGAGAACTCTATGCAATTCTGAATCCCGTAAGTATGAT



Found at i:958407 original size:18 final size:18

Alignment explanation


    Indices: 958384--958420  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     958374 AGCCCATCAC

                     *        
     958384 CAAACTATTTCTGATAAG
          1 CAAACTATTGCTGATAAG

                              
     958402 CAAACTATTGCTGATAAG
          1 CAAACTATTGCTGATAAG

             
     958420 C
          1 C

     958421 TTGGTATTTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.38, C:0.19, G:0.14, T:0.30


Consensus pattern (18 bp):   
CAAACTATTGCTGATAAG

Left flanking sequence: Indices 957884 -- 958383
ACAAAACCCAAAGTGGCAAAGCTTTGAGTCAAAATAGCACTTGGTGCGGTTATTTGCACCAAAAT
CATTTTTACGCCTTTTAAAAACGGGAAAGCCTATGAATAAGGGAGAAGGAACCCCCCATGAAAGA
AAGATTAAAGATTCATACGAGAAGTTGTATGAGACCTCGGGCTAAAGCCGGATTGATGTCTCACA
CTTGCGCCTCTTGGAAAAGGAAGGAAGAACTACCTACTGGTAGGTACATACTAGCACCAGCGAGG
GAGCATGACTAAGAATTCATAGTATAGCAAGTCCACAAAGCAGTTTTGGTAACATCACTCTCTTA
ATGGTGGGAAATGTTCTGAATCAAACCAATTCAAAGACAAAGACCTCGAGTGAAGGCTCACTAGA
TAGATCGCTTTATTCTCTGTAGAAAGCTTACTGAGGAAGTTAAATAAATAGTCGCAGCTAAGCTA
ACAAACGCTGATAGATCTGATAAAAAGAAGAAAAAAGCCCATCAC


Right flanking sequence: Indices 958421 -- 958920
TTGGTATTTTCTTTTGAGACCGTAAACTTCGAGTACGTTTAACGCGTTACAGTTACTGAATTAAT
CTACAGTATGAATAGAGTACAAATTCTTGAATTTTGGAAGAAGGATTCGAATTCATATTAAACAC
CTTCTTCTTAGCTACGCTCATAGCAACTAAGATCCTAAGGAAGATGAGCTACGATGGGGAATACC
CTTACCGCAGCTCTTTAGCCCCTCCAGCCCCTGTTCCCTAGGCTTGTTCTAGGGGGCCTCTATCT
CGCCTTGTTGGTCTACCCGTGTAGAAGTCCATACGTACCTACCGGCCAAAGAGGCTTCCACCAAA
GAAGAGAAGATCAGATAGTGAGGTGAGATCTAGGATTGGGTTAGCTTGAAAGTCAATTCTCTTGC
TGCGAGTTGCAGAGATAACCAACCATACTAAGCTATTCCACAGCCCTGCATACTTTCGGTAAAGC
TCACCGGGAAGGTAAGCTAGGCGGCGAAGCGTTTAGATTGGTCTC



Found at i:961990 original size:20 final size:20

Alignment explanation


    Indices: 961965--962004  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     961955 GAGTCAAATT

                                
     961965 AATAAAAGCAAGTCAATGAG
          1 AATAAAAGCAAGTCAATGAG

                                
     961985 AATAAAAGCAAGTCAATGAG
          1 AATAAAAGCAAGTCAATGAG

     962005 CAAGACAGTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.55, C:0.10, G:0.20, T:0.15


Consensus pattern (20 bp):   
AATAAAAGCAAGTCAATGAG

Left flanking sequence: Indices 961465 -- 961964
AAAGTTGCGTAAGGAATGTGTGTTATTGATAACTGTGGCTCGGAGCATCTAAGAGACTTTAGTCA
AATGAGAGTTGGCTAAGATCAGATCTGACTCACTTCTAAGCACCAAAGCAAAAGTAGACTGAACA
AACTTCTTCTCTCGTTCCTACGATAATCTGTCGGCGAATCGTCTTACTGAAAGTCGATTTATTAA
CGCACACGAGAAATTGGTCGCAAAGGGGCATTGCGCGTAATAAAGGGGCACTCGTCGATCTAATG
ATCGGGAATTGTCTGGCGGGAATCGTATCTTTCCTCTCCTGAAACGTACTTCTTTGCACTTTGGC
GCGTATCAACTGATTTATCTTATCGACTTATTTATCTTCGCAAATCAACTTGCTTATTTTATACG
CAATTAGGGAAATGAAATCATCACTTCCGGGGTTTCAAGTAGTAGGAGGAGCTTAAGCTTTTTCA
TTTGCTTTGAAGCCAGGAGTTGTTCCCAATTGATAGAGTCAAATT


Right flanking sequence: Indices 962005 -- 962504
CAAGACAGTATTGAAAGGTACTTTGGGCTTCCGACAATGGTTGGCAGAAAGAAAACTCAAGCTTT
TGGTGAGTTAAAGGACCGGATTTTTAAGAAGCTATATAGTTGGAAGGGTCGAATGTTATCACAAG
GTGGAAGAGAAATAATGAGAAAATCAGTTCCCCAAAGTATCACGACTTATGTTATGAATGTATTT
TCACTCCCTAAAACATTGTGCAATGACATCAATAGTATGATTAGTCAATTTTGGTGGACACAATC
GGACAAGAGACCCATTTATTGTTTAAGTTGGGACAAGCTTTGCCGAGCTAAGGACTTTTTGGGTA
TGGGCTTTAGAGACATGGAGAAGTTAAATTAAATCTTGCACTACTTTCGGATGGAGTTTACTACA
GGGCAACTCGAGTTTGGCTTACCGAGTACTGAAGGCTCGGTACTTTCATAGATCTTCTTTCCGTT
AAGGACAGCTTGGGTGGAATCCATCGTTAACATGGAGGAGTATCT



Found at i:971773 original size:21 final size:21

Alignment explanation


    Indices: 971747--971788  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     971737 CCACGTCCGC

                                 
     971747 TGAATAGAAACATTAAACTAA
          1 TGAATAGAAACATTAAACTAA

                                 
     971768 TGAATAGAAACATTAAACTAA
          1 TGAATAGAAACATTAAACTAA

     971789 AAGCCCATAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.57, C:0.10, G:0.10, T:0.24


Consensus pattern (21 bp):   
TGAATAGAAACATTAAACTAA

Left flanking sequence: Indices 971247 -- 971746
GGATCCCAAATTGCATGAGCAATCGGTCTTACATGTAAAGGATCCTGTACCCATGCCTCAAAATT
TCCCTGCCAAGCTACATGAAAGAGATTTACGGTAGTCCACAGAAAAATTATTGCTAATTGACCGA
AGTGAGAAGCAAAAATATTCTGATAAAGACGTTCTTCAGTAATATCATCATGACTCTCGAAGTCA
TGTGCGGTAGAAATACCAAACCAAATACGACGAGTAGTGGGGTCCTGAGCTAATCCTTGGCTAAA
CCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGACATTATCCTACTTAAATAATT
CTTGCTAAGAAGAATGCCCATGTTGTGGCAATTCCACCCAGAAGGTAATGGCTTACTCCTACAGC
ACGTCCTTGTAAAATGCTCAAGGCTCTAGGCTGAGTAGCAGGAGCAACCTTTAATTTATTATGAG
CCCAAACGATGGATTCAATAAGTTCTTGCCAATAACCACGTCCGC


Right flanking sequence: Indices 971789 -- 972288
AAGCCCATACAAAATGAGCACCTAAGAAAAGAAGGACATATGCAGATAATGACGAACCATAAGAC
TGAATTACCTGGGATGCTTGTGCCCATAAGAAATCGCGTAGCCACCCATTAATAGAACTCTGCGC
AAAATTTCCTCCCGTGATATTAGTTACCACCCCTTGATCACTTATACTACCCCAAACATCTGACT
GCATTTTCCAACTTAAATGGAATATTACGTACGAAATTGAATTGTACATCCAGAATAGGACTATG
GTCTGACCCTACTGCCGGCAGATTTTGAACTTTTGCATTCGGATTCAGCTCAAACCACTCCATAT
TTGCCAATGCTCTGTCCAGCTTCTCCCTAACTAGCTCATTTTATCGTCTGTTAGCCCATGTGAAT
CTCACACCTTCACTAGGAACCTCCAACAGATTACTGTGAAAAAGAGATTCATGGAAGCAATTGAT
GTTTCTTCTCGCTTTAGGCCTCCCTACATCCTTCTCCTATTGATC



Found at i:972734 original size:30 final size:30

Alignment explanation


    Indices: 972698--972757  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

     972688 CCGCACCCTG

                                          
     972698 ACAGTTCCAACATAGTGCTATCATGTAGAT
          1 ACAGTTCCAACATAGTGCTATCATGTAGAT

                                          
     972728 ACAGTTCCAACATAGTGCTATCATGTAGAT
          1 ACAGTTCCAACATAGTGCTATCATGTAGAT

     972758 TGGGTGGCTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Consensus pattern (30 bp):   
ACAGTTCCAACATAGTGCTATCATGTAGAT

Left flanking sequence: Indices 972198 -- 972697
CCTCCAACAGATTACTGTGAAAAAGAGATTCATGGAAGCAATTGATGTTTCTTCTCGCTTTAGGC
CTCCCTACATCCTTCTCCTATTGATCATAGATATCATTTAAGTCACCAACACAGATTAAAGAAAG
GCTAAGGGCTAATCATCACCACATCAACCAGCTTACTCCAGAACTCTCTTCTCTCCTCAAATGTA
GGGGGAGCATAGATCCATAAAGCACTGTAAAACTTCTGAGTATCCACCTCTCTGACCAGAGTTTC
AATAAGGTTCTTCGAAGATCTTGTAACCTTAACTTACAGAGTATACTTACACCAGAGTGTGAGAC
CCCCACTAAGGCCATCTGGATTAACATAGAGCTTATTCTCAAAACGACACCTCTTACGTAATCTC
TCCATAACTTCTTCTCTATTTTTTGTCTTCATAAGAAAGACAAGATTGGGATCGTATTTTCGGAT
ATGATCATTGAGCTCTCTTCCCGTCAGGGCCGACCCCGCACCCTG


Right flanking sequence: Indices 972758 -- 973257
TGGGTGGCTTTTACAGGACAGCCACCAGAACCCTCTGATTCAATTATCTCCTGAACTTCAGCCTC
CGTAACAGGAACTTACATAAAATTCATTTCATTGATCTCTATAAACTCTCTCCTAGATTTGCATA
CTCTTCTCCTACCAGTTGTCTTCCTTCCTCGTCTCACCTTTGGGACTTCAGTACCCCATCTACTT
TCAAAAGAGCCAGGAATGACTTTAATTATCTGTTTTTCAACATTCTGTTCTTCAATAATTTCTTC
CAAAAACACAGAGCTTTTCGCCTTTTTCACAATTCTCAGATCCTATAGATCATTTTTCTACAATC
TTTTTAAATTCATCTTTCTAAAAACAGAGGATAGATTAATTTCCGTACTTAGCATCTTAGTTGGA
TAAAAATGAGGAATAATAGAATCATTTCCCACCACTGGGCTACCCTCTTGGTCAGCCTCAATATA
AATGGCACCAGGTAATTCCTCTTGGCCTCTTTCATCAGAAATTCT



Found at i:983659 original size:20 final size:20

Alignment explanation


    Indices: 983634--983673  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     983624 CCCCTTCCGC

                                
     983634 TGAGAAGCTGGTTATTCTTT
          1 TGAGAAGCTGGTTATTCTTT

                                
     983654 TGAGAAGCTGGTTATTCTTT
          1 TGAGAAGCTGGTTATTCTTT

     983674 CCCCTTCCTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.20, C:0.10, G:0.25, T:0.45


Consensus pattern (20 bp):   
TGAGAAGCTGGTTATTCTTT

Left flanking sequence: Indices 983134 -- 983633
AGCAAACCCGTAGCTCGTTGGAAGCGCAGGTGAACATTCTTCCCTTTCCTTTGTAGATAACTCCT
CATCGAAGAATCCGCATTTGCTTTACGAACTGCATCTTCCTTTCCGGTATTGCTAGCGATATTGC
TTGCGAGGGCGATTGGTGTTCAAAACTAATCTGTTCTTCACTGGCTTTTCAGAGGAGGGGTTCTT
CCTTAGAGTCGTTAGTTCTCCAACTCTGTCAGTTATAGCCTCTCTGATTCGACGCAAGTCACAAG
TGCCATTTGTTCTGTTCATAAGTTCGGATACTCTCTAAGGGCTCGAATCTGCTTTGATATGTAGT
CTGTGGACGTCTATTGAAGGGTCTAGCCCAGGCATCTCAGTCTAACTCCGGGCAAAAGGATTTCT
CTGTTGCAGAATCTGGGTATTCAACAATGGCTTAAGCATTTTCATTTGCTTTTGAAGGAGTTGTT
CCGGAATTGAAGTTCATAGAATCGATAGCTACTAACCCCTTCCGC


Right flanking sequence: Indices 983674 -- 984173
CCCCTTCCTATTTCTTACTTCGGGAAGTAGGAGATTAGGCCACGTCAGAAACAATAAATGAAGAG
CCGGTTCTAGCAAGCTACTTTGGCCAAGGAATTGGTTTAGGAATTGGGTTATCTCAATAGCGAGT
TAATCAGTCGTGAAAGAGCATTCCAATCAATACCGCACCATCAGTCACTAGCGCGGAGGGGCATG
CAGCTTCGCCTTCTCTTGTCGATCTAAGATATCAAAATCTCACGATTCCGAGGCATCATGGAAAG
GATTTCATCCTTTGACCCCCAAACGTGAGGTTAAACTTAGGAAATGGTCAAAACCCGACATCCAT
ACCATACCAACCAGTAGAGTGATCCATAGGTCCACTATCTAGTGGACGCCCCCATTCTCCCATTG
CGGGACATTGTTGCTAACAAATCCACCTACGGAGAAGAGAGAGGGACGATTAGGTGAAAATGGCC
TTCATTTAACCCTTTTTGATGACTTGTAGAAGAGACCCGGGTTCG



Found at i:988399 original size:23 final size:23

Alignment explanation


    Indices: 988369--988415  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     988359 ACTGATTCAC

                                   
     988369 TTGCTTTACTCATTTAGTATTAT
          1 TTGCTTTACTCATTTAGTATTAT

                                   
     988392 TTGCTTTACTCATTTAGTATTAT
          1 TTGCTTTACTCATTTAGTATTAT

             
     988415 T
          1 T

     988416 CTATGGGCTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.21, C:0.13, G:0.09, T:0.57


Consensus pattern (23 bp):   
TTGCTTTACTCATTTAGTATTAT

Left flanking sequence: Indices 987869 -- 988368
CTCTGCACCTAGATAGTGAATATCCTTCCTCTACGTAATCTATTCTTTATTTAGTTCGGGATAGA
GCTTCCTCTGCGCAGTAGGTCCTGCTTAGTACTCGATGTAATAGGCTAGTACGTCTAGTGTACAA
GTAGCATTGTCAGTGTCAGTAGGAAAAGTGGCCTTCTTACTTGACCGCTTAGGAAAGAAAGAGCG
GATAACAGGGCTTATAGAGTGAAAGCGTCTTTTAGTGATATCCATCTCTCTCTCTTTTTTAAAGA
CTGATCGCTCTTCGTGGCAGCTCTACCTTCGCCTTATGGTTCAGCGGTACTAAAGACTGTTAGCC
TGTCTATAAACCTCGACTCTTCGCGGCAATTATATAAGTCAGCTCCCGTAGTATGTATAAGGGCA
GTGAAGGCAAAGATGTAAAGCAGACTAGACGGAAAGAACTCCGAGTAAACAAAAAGAAAAGCCCA
TATTGCATTTTTGAAATATATGAAATCTATTCAGAACTGATTCAC


Right flanking sequence: Indices 988416 -- 988915
CTATGGGCTGAGGAGAGAGTGCGAAGTGAGTGTCGTGCCACTGGTACCATACGGATTTCGGACTG
AACTAACTAGACCAAGAATCGTTTCAATCATCCTATTGGTCCGGCCGGAGTACTTACTTGATTAA
GGGAGTTAGTAAAAGACGATAGGCAATGGAATTCCAGGAGAAGTTCTTTATACCCGTCATCGCTT
AAGTCATCGGGAAGCAGTGGGAGCAGGTAAAAAAGGCTTTCTCCAAAGATTTGACTAGCTGCTCG
CTGGAAGCCATTCCCAGGGTATGCTTTTTATAGCGGCGTAAGCCCGGAAGATGACTAGATAAAGC
CGATGGCAGGTCTTGTAAGTCGAGTGACTCGACCTATTAGGGTAGAGTGAGGACGTAGGACGAGG
TGTGTAGCCAGAGCCGCCAGAAACCCTGTTGAATTGCGGCTTAAGGTTTTCAGAAGGCCGACCTT
TGTTGGTGTAATTGGCCGAGATAACAGGAGAGATGTTTTCATCCT



Found at i:1001106 original size:24 final size:24

Alignment explanation


    Indices: 1001074--1001123  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

    1001064 CGTCGAAGGG

                                    
    1001074 CCTGAAAGCGCCTTCTTGCTAACA
          1 CCTGAAAGCGCCTTCTTGCTAACA

                                    
    1001098 CCTGAAAGCGCCTTCTTGCTAACA
          1 CCTGAAAGCGCCTTCTTGCTAACA

              
    1001122 CC
          1 CC

    1001124 GGTTATTCCC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24


Consensus pattern (24 bp):   
CCTGAAAGCGCCTTCTTGCTAACA

Left flanking sequence: Indices 1000574 -- 1001073
TTCGCTTGGCCCAACTGCTGACACACCGCCTGCCCGCGTTAAGCTGGCCACTTGTAGCACAGACC
AAAAGAGAAAACGGAAGCTCTTTCTATTTAGAGAAAAGACTCCGCTTCCAGGCTTCTTCCCAATT
CACCTAGTTGCCACTTGTCCTTGTGGCGCGGAAGGCTCATTTAGACCTCTACTCTCAAGCAGAGA
GGGCTGTACGCCTCCGCGTTCCTCAGGTCAGTCAATAATCCCAGCGCTGATTGATGCTTAGTTGG
GGCATTGTCATTCCTTTCTACTTCTATAAGTCTGTATTGAAAATTCCTCCTTGTTCTTCTACGTT
AGTTAGCTGTGAACCTCTCACCGGGCAGAAACAAAACTTCGACCCTTCTTATCCCATCTCCGATT
GTGAGAGAAAAGGCATTGTCCGCGGCAAGAGTCAAAACTGTGGAATTGGAAGTAGGCGAATCAAT
ATAATCGAAGTCCAGGGTGCCCGATTCCTTTAGCGCGTCGAAGGG


Right flanking sequence: Indices 1001124 -- 1001623
GGTTATTCCCCCCTCCTAAGAATGAAGGAATGGATTGATCACCTTTGGTCTTGCAGAGCCTTTCC
TTAACATAGATGGGCTTGGCTTCACTTAGGAAATCATGTAAGGAGCGCATTCTTTGGAAGGTTCC
AGTGGATGTCTTTCATCTTGGGATTCTAAAGGGATCCTCGATCTCTATAATCTATCTTTCTATCC
AAGTCTTTCTTCGTGGTAAGGCCAAGCCAGTCACGGATTTCTTTGTCGCTGCTGTAGGATTCCCC
CACAAGCCATCAGTCTCTTCAAAACCTGTTGTACCCTTAAAAGGAGTCTTTCAAATGGGCTCTAG
CTGGCTCAGCAGAACGGTAGGAGCCCAGGACTTTCAGACGAATCTCTGAAGTAGTACTCGATGTC
AATTCCTGTGTTCAATGCTGAGACGGCCCTCTTTTTTTTTGTTTTGTTTGTTCACGGCGGCACGA
AAGAATGAAGAAGCTGGAATAACTCAGAAAGAAAGAGAGTGGCGC



Found at i:1027564 original size:22 final size:22

Alignment explanation


    Indices: 1027536--1027580  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1027526 ATCGACTCAA

                                  
    1027536 TTGAAGAAAGCCTTATATTTAT
          1 TTGAAGAAAGCCTTATATTTAT

                                  
    1027558 TTGAAGAAAGCCTTATATTTAT
          1 TTGAAGAAAGCCTTATATTTAT

             
    1027580 T
          1 T

    1027581 GTATAAAGTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42


Consensus pattern (22 bp):   
TTGAAGAAAGCCTTATATTTAT

Left flanking sequence: Indices 1027036 -- 1027535
CGTTTTCTGAATCCGATCGATCCAGCTCTGGTGATGAATTACTCACCTCGACCTTCTCTTCACCC
GGCCTTCAATACTTCTCTGCTGCGCTTACATCTTCAAAGCCTATCGGCTCACGCCTAACTAAGCC
TTCGTGAGGGCAACTTCTTTTAGTTGTTAAGCGGAGAAGTTCTATTTATTTTAGACGAGATTTCG
ATTTCGCGGTGAAGCGGTACTAAAAGACTTCAATCAGCTCTTCTTTGAATTTGAGACGTGTCTTA
TATTACGATGAATCCACATATCGAGGTCAGAATGGGATCGGGTGTCCAGATACGGCGGGAAGAAG
TAGTCCCTCCTGACTTCAAAGCATCTGAGACCACCATTGACTCCACTGCGGTGTGGGTTAGATCA
ACCGAGCAAGAAAGAAAGCTAAATCCTGTGAGAGTCTCCAATTCATATTCGCTCTGGCACGGCAT
TCATACCTATTTTTCTTTAATAGAATGAATTCTAAATCGACTCAA


Right flanking sequence: Indices 1027581 -- 1028080
GTATAAAGTCCATTTCGGCCCTAAATTTCAATAGAATCTCCCTCTTTCGCCTGACTTAATAAGTC
AGCTCTTGAAAAAAACCTTACTAGAAATCTCAGCCAGATCCTTCCCTTTTCGCCTATCGTCTCCG
CACCTTCTTACTTTGCGTCAAAAGTCTTACTACGTTTGTTCGAAGCAGGTGAAACCCTTCTTATA
GTATTGTATGATATTGAAGAATTGAAGTCATGTTCATCGGATTCTCTTAAGAGTGAATTATTCTT
AATAGCACCTATGTTAGTGCAACTTCGTCGCGAAATATCTCCATCAAAGAAAGATCAGTTCCATT
GGTCCATTGTATATTTATTATCGTACGCAAATATATCTTCAGAGTGAGTCTAAAGACCGCCATCG
GTAGCTGATTAATTTGAAGGAGAAGCTCTTTCTTTGCCTGTGCCTAGCCCTTGCCTTTTGAACCA
GGCCTTTTCAGAGCCTTTGGCATCTCTGCCTGCTGATATTATCTA



Found at i:1028554 original size:27 final size:27

Alignment explanation


    Indices: 1028524--1028577  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

    1028514 CCCTCGAAAT

                                       
    1028524 GGCCAAGGCTTGATAATCGGGTATAAC
          1 GGCCAAGGCTTGATAATCGGGTATAAC

                                       
    1028551 GGCCAAGGCTTGATAATCGGGTATAAC
          1 GGCCAAGGCTTGATAATCGGGTATAAC

    1028578 TCGGAAGCCG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22


Consensus pattern (27 bp):   
GGCCAAGGCTTGATAATCGGGTATAAC

Left flanking sequence: Indices 1028024 -- 1028523
CCTTTTGAACCAGGCCTTTTCAGAGCCTTTGGCATCTCTGCCTGCTGATATTATCTATTAGGTAC
CGATCCGCAGGAATAGAGATAAGCTATTAGCCTTCTTTATAACATTCTTCACCTGAACCCGGTAA
CCGCTCTGTATAGCGAGCTGAGAATCAGACTTTTTCTGAATCTAAAGTCAAGTAAGGGACCGAAC
TAAGATCCACTATATACAAGAAAGAACTGAGTTCATAAGTCATTCCAAAGAATGGAACTCGACGA
GAAAGAAGTTGGTACAAAGAACGGATTTTATAAGATAATCAGATGATTGTGGTCGCACATTCAAC
ATAGCGTTCGGACTCACCTACTAAAACCAGCAGTTTTTCCTAGTGGGACTTGGAAGAGAGAAAGC
ACTTGAGCGTTCCGAAAGAACTTCTGTTACAGTTGCTGGCCGGTTCTTTTCAGACCGGAAGTCCA
TGCAAGCCGGGCTGACATTAACCAATCGGATACCTCCCTCGAAAT


Right flanking sequence: Indices 1028578 -- 1029077
TCGGAAGCCGGCTTGCGCTGGATTGGCCTCTGGCAGGCATCGCAGCTCTTACCGTGTGCTATGCA
ATCTGACAGGCCCGTAGGCCAGTAGTGGCCGGCCATGTCTCCGGATCAAGCAACGCATCTTCACA
AAGCCATGTGCCCCACTTAGGGGACTCAGTGTTTAAGGGTCGTGAAGTGAAGGTGGATGGAGTAG
TCCTTAAAGCTGATGTGATTCCTTTAGGACCCCATAATTTCGACGCCATCTTGGCATAGATTGAC
CATTCAAGTATCACACCCTTTTGGAATGCCATTCAAAAGTGATTTCCTTCTTCGTGCCAGTGTAA
TTCCCCAGTAGAATTAGTGGGATTGCCCCTATTCCCCTTCTTCCCCGAGGTCACTCCCTCTTGTA
TTTCTTTTTTATTCCTTCTCGCTGTCCCAAGATCAGAAAACCCCTCTGTACCAGAGATAGCCTTC
TTCCTTTCCTAGTCTTCCTTCTTTCTAAAGTGCAGTCCATCCTGC



Found at i:1032915 original size:17 final size:17

Alignment explanation


    Indices: 1032893--1032926  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

    1032883 CCGACAGGGC

                             
    1032893 CTGAAGCTGACTATTCT
          1 CTGAAGCTGACTATTCT

                             
    1032910 CTGAAGCTGACTATTCT
          1 CTGAAGCTGACTATTCT

    1032927 ATAGACCGGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35


Consensus pattern (17 bp):   
CTGAAGCTGACTATTCT

Left flanking sequence: Indices 1032393 -- 1032892
TTTCAACCCCATCACACTATCTCTGAAAGAACGTTGCTGAGAAGCCCCAGCAGCCTCTGAAACAC
CCACCAAATAAAAGCCCAACCTTTCTAAACTATACGATACCACTCGCCATGGATGATACGATTTC
AAGAGATGCGTATCTTACAAGACCGGATGTTCGCACTTATTCATCAAAGGAGGATCTCTTCACTT
TTTTCTACAACAGAGAAGTCAAAGCAAACTTGTGCCTTCCACACAAATGACATGATGACAGTTAG
ACTAGTTCTGAAACCGAGACTTTTAAAACATCGTAAAGCCTAAAAAATGACCTAATTCGTAGAGG
GGGACTCTTTTTACAATGCAAAAAGGAAGGGCTCAATCTTAGGTTCCGCTATCACATAGTAGTGA
TGAAAAGCTTCCCGTAAAACAGCAGATAATAAAGCAAGCGGACATTTCATTCAAGTGTAAAGTTA
AATTCAATCAAATAAAGCCCGGTGACACTCACTGGCCGACAGGGC


Right flanking sequence: Indices 1032927 -- 1033426
ATAGACCGGGAAATAACTCCTCTACTTCTCTCTTCTAGGCTCGATTACTCGCTAGGCGGATGCCC
TCTCTTTCTTATTACAGGGACTAGAGCACTATCTCGATCAATCTCTTTCATTTCTTCAGCTCCTC
AATTCGGATCCGAATCGCGATGCTCATCATTCACATCAAAGAAGACCATCAGCTAGAGTCCCATT
GCTCGTACTACGCCCTTCGGTTAGCGGCCCTGGTCCCTTTCGGTGATACCATTCATAAAAGTCAA
TCATATATGATCCTCTTTTTATCCCCTTCCCTTTCTAGTCTTTTCGATTCATTGATTCTATTGTT
GTTTAATTGATTTCATTCCGGAATTACAATTCTATTCTAGCAACTCCATGAGTAAGACGCGCTTA
ATAGGGCTCCCTTCGTTCTCTTCGCTGCGTTATATCATATAAAAGCATCTTCGTTCGCATCTGAG
CCTATTTGATTTCGTGCTTCGTCAGATGAAAGGTCTGGTGGAAGA



Found at i:1044755 original size:29 final size:29

Alignment explanation


    Indices: 1044713--1044770  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

    1044703 TGCTTTCCCA

                                         
    1044713 AGGGGTTTTAGAACGCTTTTCAATTGTAG
          1 AGGGGTTTTAGAACGCTTTTCAATTGTAG

                                         
    1044742 AGGGGTTTTAGAACGCTTTTCAATTGTAG
          1 AGGGGTTTTAGAACGCTTTTCAATTGTAG

    1044771 CTAGTTTATT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.24, C:0.10, G:0.28, T:0.38


Consensus pattern (29 bp):   
AGGGGTTTTAGAACGCTTTTCAATTGTAG

Left flanking sequence: Indices 1044213 -- 1044712
GATTGCTAGAGTACAGGTCTTGCACATAGACTGTAGCAAATAAATAGGAAGGCTTTAACCCATCC
CTCCCGGTTAACTTGTGGGAAATACGGTAAAACGTTAAAGGCTAAAATGCAACTTGGAAGATTTG
TCTCAGCCCTATTGATTGCCTGTTCGCTGCTTAAGTCGAATAGTACTACGGAGTCTTTATGAGGT
GAGACGATAGGTGAATAAAGAAGGTTTACCGCTAGTCGAAGATATTTTTCTTTCTATTTCTATAA
TAAATTATGGATGCATTCTCAGATCGAGATTGCGTATTTTCTTTTCTACCTATGAGCATTCATTA
CCTAAGAAGCTGTATTTCTACGTAAAAGCTCAGTTAATTGGCTGTTGATGGGTTTGTCCGAGTAT
CCGTACCGAGGCCAGTCTCCGATAATGGCGAAGTTGCTTTCCTTATTGGTTTTGATGGGGAATCC
TCTCAAGATGTTTTCATCCGCTTCTCTTCCTAAGGTGCTTTCCCA


Right flanking sequence: Indices 1044771 -- 1045270
CTAGTTTATTGAATTAAAAATCGTTAATAGAGTGCCCAAGTTATTGAATTAAAAATCGTTAATAG
AGTGCCCAAGCTATCCACCTCGGTTGTTGGGTAAGGTGAGAAATTCCACTTTCTGTATTTCAGTA
TTTTATTTCGAGTACAAGTCTTTAGCTATAAGTAAGAGGGATGCGCTCAATCGGGAAAGAATCCA
TCGCCAAAGAGTTTTGAGGAAGTTGGGGTATTCCCCAGATAAAAAGCAGATTCTGAGATTAGGGA
AGAATCAGCAGTGAAAGCAGAAAGGTAAGAGCTCTTAGGATTAGGAGCTAGTTTATAGCTTTATT
CCAATTCCCTATCGAAATCCCAATTAAACTATCCTATCATCAAAGGCGCAATCAAGAAAATGAGC
TCCATTCTCTAGTTCCATTCCAGGTGGTGAAGGAGAGAGGGACACAGACCTAACTGGCTTTACTG
AGTCCTACATAGACCAGAGGGTCTAAAAGAGCTGACTTTCGTACC



Found at i:1044822 original size:35 final size:35

Alignment explanation


    Indices: 1044776--1044845  Score: 140
    Period size: 35  Copynumber: 2.0  Consensus size: 35

    1044766 TGTAGCTAGT

                                               
    1044776 TTATTGAATTAAAAATCGTTAATAGAGTGCCCAAG
          1 TTATTGAATTAAAAATCGTTAATAGAGTGCCCAAG

                                               
    1044811 TTATTGAATTAAAAATCGTTAATAGAGTGCCCAAG
          1 TTATTGAATTAAAAATCGTTAATAGAGTGCCCAAG

    1044846 CTATCCACCT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31


Consensus pattern (35 bp):   
TTATTGAATTAAAAATCGTTAATAGAGTGCCCAAG

Left flanking sequence: Indices 1044276 -- 1044775
CCCTCCCGGTTAACTTGTGGGAAATACGGTAAAACGTTAAAGGCTAAAATGCAACTTGGAAGATT
TGTCTCAGCCCTATTGATTGCCTGTTCGCTGCTTAAGTCGAATAGTACTACGGAGTCTTTATGAG
GTGAGACGATAGGTGAATAAAGAAGGTTTACCGCTAGTCGAAGATATTTTTCTTTCTATTTCTAT
AATAAATTATGGATGCATTCTCAGATCGAGATTGCGTATTTTCTTTTCTACCTATGAGCATTCAT
TACCTAAGAAGCTGTATTTCTACGTAAAAGCTCAGTTAATTGGCTGTTGATGGGTTTGTCCGAGT
ATCCGTACCGAGGCCAGTCTCCGATAATGGCGAAGTTGCTTTCCTTATTGGTTTTGATGGGGAAT
CCTCTCAAGATGTTTTCATCCGCTTCTCTTCCTAAGGTGCTTTCCCAAGGGGTTTTAGAACGCTT
TTCAATTGTAGAGGGGTTTTAGAACGCTTTTCAATTGTAGCTAGT


Right flanking sequence: Indices 1044846 -- 1045345
CTATCCACCTCGGTTGTTGGGTAAGGTGAGAAATTCCACTTTCTGTATTTCAGTATTTTATTTCG
AGTACAAGTCTTTAGCTATAAGTAAGAGGGATGCGCTCAATCGGGAAAGAATCCATCGCCAAAGA
GTTTTGAGGAAGTTGGGGTATTCCCCAGATAAAAAGCAGATTCTGAGATTAGGGAAGAATCAGCA
GTGAAAGCAGAAAGGTAAGAGCTCTTAGGATTAGGAGCTAGTTTATAGCTTTATTCCAATTCCCT
ATCGAAATCCCAATTAAACTATCCTATCATCAAAGGCGCAATCAAGAAAATGAGCTCCATTCTCT
AGTTCCATTCCAGGTGGTGAAGGAGAGAGGGACACAGACCTAACTGGCTTTACTGAGTCCTACAT
AGACCAGAGGGTCTAAAAGAGCTGACTTTCGTACCGATTATCCGAACCTTTCGCTTAGCAGAACC
TCTCGCTCAAAGGCCTTAGCACTATCAGTGTTCAGCCGAACTGGT



Found at i:1048872 original size:28 final size:28

Alignment explanation


    Indices: 1048837--1048893  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

    1048827 TAAGTGACCA

                                        
    1048837 GACATGTACAGAAAGCGGGTAATATCTT
          1 GACATGTACAGAAAGCGGGTAATATCTT

                                        
    1048865 GACATGTACAGAAAGCGGGTAATATCTT
          1 GACATGTACAGAAAGCGGGTAATATCTT

             
    1048893 G
          1 G

    1048894 CTTGCTAGTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25


Consensus pattern (28 bp):   
GACATGTACAGAAAGCGGGTAATATCTT

Left flanking sequence: Indices 1048337 -- 1048836
CTGAATTGAAACTCGAGCTTAGAATAGACGGTAAATCAGGCTTATTTTCCTCTGTTACGGCTGAA
GCTCCTCCTGTTGAATAAGTTTCAGGTGATACTATACTAACGAGCTAAAGGAAATAGTAAGGGCT
TTCCGAAGGGATATAGTCTTACCGTGCTGCTATAAGCCTTTGAAAACTCGAGAAATAGGAAGAAC
AGTCTTCAAGAGCAAAGTAGCTTAGCCCAGCCCGAACCGAATTCTGATGAATCGATAAACCAGCG
CATTCCCTACTTCCATATGTCCCTTCAAAGCCTTATCTTCGTCTCAGAACTCAAGCCACAGGAAA
ACTGATTGAGGAAGACCCTCACTACCAGCTATTTACCTGCTTAAGCTCTCCTTCGTGACAGAGAA
AGAGATGAGAGGCGTGGTGCATTGCCTGAGTACGTGGAGGCACTACTTGCTAAGTAAGAGTCTCT
TAGAGTCTTCTTTCTCATAAGAGAAGAAAGCGTTTTAAGTGACCA


Right flanking sequence: Indices 1048894 -- 1049393
CTTGCTAGTTACCGGATCGCCTTTCCTTGCTAGTTGCTATTCCTTCCGTTTATTCTCGAGCAGAT
AGAGGGTGAGGAAAAGGGAGACTATTTCTTGTATTTCTCAAGGTTTCATAAAAGTTAGTTTGTTG
AGCCAATCTAATGGAAGAGATTAGACCCCAGTCCTACCACTAAACTCAGGATTCCTGTGTAAGCA
ACTTCTTAGAATTCCGATTAGGCTCGGCTCGTCGGAAAGGAAAGAGAAGATAGAGTTGCTCAAGG
AATAGATGAAAGGTATTTCCCTGGATCCGGGAATGGAAGATAATCAGCCTGCCTATTCTACTAAC
AGCGCTTTCGCCACTTCGGTTCTTACTTAAATAGCAAAATAGGCAGCTCATTTGAAGGCTTGAGT
GAAATGTTATAGCTGTTGTCGTTTAGCTTGAGGAGGACGGTATTGAAGCTTGGAGTTACTTCCTT
TTATAAAAGCAAAAGCTTATTCTATTGCTGGCAGATTTACATTCA



Found at i:1057659 original size:23 final size:23

Alignment explanation


    Indices: 1057629--1057674  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1057619 GCTTTTGACC

                                   
    1057629 CCATGAATGCTTCTATCGATTCT
          1 CCATGAATGCTTCTATCGATTCT

                                   
    1057652 CCATGAATGCTTCTATCGATTCT
          1 CCATGAATGCTTCTATCGATTCT

    1057675 AACGCCGTAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.22, C:0.26, G:0.13, T:0.39


Consensus pattern (23 bp):   
CCATGAATGCTTCTATCGATTCT

Left flanking sequence: Indices 1057129 -- 1057628
CTTCCACCGGGGTTGCTCCGACGACTGTGGCTCCCCCGAAAGCGACCTTCAAGGAGAAAGTTCTG
GGCAAGTTTGTTCCGAAAGACTTCTATAAGGAGGACGAGTTCGGCCATATTACGGACAATGATGG
ACTAATTGAGGTTTCCACGAAGGATGCCTGGCCGTGCTTAAGAACGACCGAGAAACTGCGTGAGA
GTCTTAACCGGCGATGGCAGAATTGTTTGATAGTTAAACTCTTAGGTCGCTCGATTGGCCTCAAG
ACCCTTGACGAAAAAATTAAGAAGTTGTGGATGCCAAGAGAGGAAATCGAATTGATTGAACTTAG
CGAGGGACATTTCCTTGTGCCTTTCAAAGATACTAATGATCTTACCTTTGCTCTTGAAGAGGGGC
GAAAGCGCTGAGACGTAAGGAGAAGGACACGAAGTGACTCGACAAAAGGAGAGGGGCTGAGGCTT
ATTTTTATTACTTGATGGTTCGTCGTTGGGACCCGGCTTTTGACC


Right flanking sequence: Indices 1057675 -- 1058174
AACGCCGTATGGGTTCGGTTTCCGGGTCTATCTGTTCGGTACTATGATGATCGGGTTCTACTTGC
TATGGGTACTTCCCTCGGTCGAGCCTTGAAAGTTGATCAAAATACACGTTATGCTTCTAGGGGTA
GATTCGCGCAAGTGTGTGTCGAAGTGGATCTTAATCAACCCCTTGTTCCCAAAGTTTGCCTTGAC
GATAAGTAGTATAATGTTGAGTATGAGAGCCTTAAGCTTATTTGCTTTCATTGCAGTCGGATGCT
TTCTAAGGATTCCTTTGTTATCGAACAAAAGACCGCAGATCCTAAGGTTCCTAATGAGGCTACGA
CTGTGCCGGGGACGGTGCTGGTCGCTGAACAAGGGGAGGATGCAAATGTTAGGCCGGTGGAGCAG
CCTGCTTCGGACTTCGGTCCTTGGATGATTGAAAAGCCTAAGGTCTCTAGGAGAGTTAGTAAAGT
TAACGATGGTGATAAAGGGAAGAAGACTGCCATGCAAGGTACAAG



Found at i:1058581 original size:19 final size:19

Alignment explanation


    Indices: 1058557--1058594  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

    1058547 GCTACACCAA

                               
    1058557 GAAAGACTAGTTGACATTT
          1 GAAAGACTAGTTGACATTT

                               
    1058576 GAAAGACTAGTTGACATTT
          1 GAAAGACTAGTTGACATTT

    1058595 TATCTGCCTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32


Consensus pattern (19 bp):   
GAAAGACTAGTTGACATTT

Left flanking sequence: Indices 1058057 -- 1058556
TGGAGCAGCCTGCTTCGGACTTCGGTCCTTGGATGATTGAAAAGCCTAAGGTCTCTAGGAGAGTT
AGTAAAGTTAACGATGGTGATAAAGGGAAGAAGACTGCCATGCAAGGTACAAGCGGGGGTTCGCG
TTTTGCTGCTCTGGCCTAGCTTGGAGAAGGAGAGGGGAGTGGAGAGAATGGTGGTCCTATGACTG
ACGCGATTGCTCCTACTAAAGGAGCTGCGGTTCGGCTTTCTAACACCCAGGGTAAGAAGCATGAT
ATGGGGCGTTCTGCTCCTAAGTCGGTTCCATCGGTGGTGCGCCATCCTACTGACCAGTACCCAAA
GAATCATGCTCCTTTAGCTTCGGTTGATGTAAATGGGAAGGGCACTAATCCTTTAGCTGTGCACA
ATGCCAAGCAGGTTACAAGGTTGGTTCTTCCCAGTCCTAGTCCAATAACCGAGAGCAGATTAAGA
AAAGGAAAGGCAGAGTGAAAAAATTAGTATCGAATGCTACACCAA


Right flanking sequence: Indices 1058595 -- 1059094
TATCTGCCTTGAGTGTGCTTGAAAGACTGGTCTCTTCCCTGATTACGAAGATGGGGAAGCCTGAA
AAGTAGTAGTAATAGCTACCCTTTTTAAACCTTGGAGAGAGATTCGCCGACGAACCCCCAGCATA
GCCTATCGGATCAGCAAGAAAGCAGTTCGAATACATGAGACCTATACTCAATCGGAAGATAAAGA
TGAATCAGAATAGGCTCAAACAAAGGCGGGGATAGAAGATATTTCTTTAAACCCCAAATCCGGTA
CCGAGAGCAGATTAGGAAAGAGGAAACCCCGTCCTTAACAAAACCCTTAGAATAGTAGCAGCTTT
ATCCATTACTTCTCAGCTCTAGTTCAGTTCCTCGGATTGAGAGCCTACCTTTCAAAACTTAGCAG
CTCTTCCTTTGATCGGCAGTAGGTAATAGACGGAGTCCACATCCAAATGGATAAAGACCCCCCAC
GAGCATCAGAATCTGAGTATGGCAAAACCGGTACTGGTTCAAGTG



Found at i:1064102 original size:21 final size:21

Alignment explanation


    Indices: 1064078--1064119  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1064068 TAAGTTGAAA

                                 
    1064078 TATGGGGAAGTAGCATTAAAT
          1 TATGGGGAAGTAGCATTAAAT

                                 
    1064099 TATGGGGAAGTAGCATTAAAT
          1 TATGGGGAAGTAGCATTAAAT

    1064120 GAGCGAGAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.05, G:0.29, T:0.29


Consensus pattern (21 bp):   
TATGGGGAAGTAGCATTAAAT

Left flanking sequence: Indices 1063578 -- 1064077
GGCTGATTTCAGGCCTATTACGCTCTTAAATACCATCTATAAAATTTTGTCTAATCTAAGGCTCT
GGTCAATCGTTTGAGAATTTTGTTACAAAATTGAGTTGGGCCCTTTCAGAGTAGTTTTTTGCCGG
GGCGTGGAACTGGAGACAACATTGTCATTACTCAGGAGGCAGTTCACAAAGCTTGACTGACCTAT
TTATTGGGTAAGTACTTGATTAGCAGTCCTAGTATGAAACTTCGGTTTCTAAAGGCCGGTAAGCA
GACAAATTAGTTCATGCAAGCAAGTTGAGAGAAGAAAGAGCACTTAACAAAACCCCAGGTTAGTA
CGAGTATACGTAACGAGTATCCCACTATGAATTAAAGCTAAGTAGGCAGATCTGGGAGTAAAGGC
TGTGCTTCCATATCCACTTGTCCGAGGCATCACGCACAAGGCGAAGAACTAGGTTGAGGACGTGG
GGTTCTGCTAAAACTAGAAAAACGGAATCAGAGGCTAAGTTGAAA


Right flanking sequence: Indices 1064120 -- 1064619
GAGCGAGAGGTATCTGAATCTTCGATATCAGATTTAATAAGGGATTGAATTGAGTCTTCCTTTTT
TGTCGGCGAATCGTCTTCTTCGACCCCCTCTCCGGTTGTATTTTGCCATTTTTCACTGTATTTAG
GCGCATCGTCTTCCTCTCATCCCAATGTAGCTAGGATACTCAAAGACTTGTACTTCTAGTCAAAT
CCACCACCAGTAGTGCTAATAGTAATATCCTAAGTAGGCTCATTTCAATGCCCTAATGCCCTTCC
ACTCTCTCGGTTCCCCATAAATGAAAAGCTGCTTCGTTTTCAGAAGCGATATGCAGAAGACATGG
AAAGCGGGGGTTGCTAGCCTTCTGTCTTGCTAGCAGTGGGGTTGTCTCTTGTTAGCGGTATTTCT
TGTTCTTTTCTTGTTGATGAGATGTCTAAGCGAAAGGAAAGGAATGGCTGTAAGGCTAGGTGCCG
GTATCACCTATTTTCTTAGCTGCCCTTTAGAGCTAGTACCACCTT



Found at i:1066125 original size:27 final size:27

Alignment explanation


    Indices: 1066095--1066147  Score: 106
    Period size: 27  Copynumber: 2.0  Consensus size: 27

    1066085 TTAGAACCGG

                                       
    1066095 AACTGTATTAATGCTTTTTTTCCTCAT
          1 AACTGTATTAATGCTTTTTTTCCTCAT

                                      
    1066122 AACTGTATTAATGCTTTTTTTCCTCA
          1 AACTGTATTAATGCTTTTTTTCCTCA

    1066148 ATGGACAAGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.23, C:0.19, G:0.08, T:0.51


Consensus pattern (27 bp):   
AACTGTATTAATGCTTTTTTTCCTCAT

Left flanking sequence: Indices 1065595 -- 1066094
GATAGATGCTGAAACCCCAAGTCTGGTAAATCAGAAGCTGCTACAAATTTCACTTCTGCTTTGAA
GAATAAGATTTATGCTTGTGAGTAGTGCGGATGCCTTGATGTTGCGTAGGGGATGAAAGCTGCTT
GTTCACTTGCATGAGCTCGGGATTTCTTATAAATCCATCTCTGAACTCACCTTTCAAGTATTACC
AAAGAGTCGGTCTTCCATTCTCTGACAATTGGGGTGGGGAGTTCCTTTGCTTTAGTAACGGTTCG
TGAGCCATACCCATCATTAAGAGATCCTTTTAACCCCTTCTCCTTACAAAATCTTATTCGCTTCG
ATACGCTTCGCTTTTACCTTCGGACCCTTCGGTTACCTAAACCCTAAACTCAAGGGCGGACGAAA
ATAGAGCATGATTTACAGGTACGGTATGAAGAACCAGTAGCTCCATGGACTAGACCAGAAGGGGA
GGAGCTCTATCTCTCCCCGGCGGATTATAGGTCTATTAGAACCGG


Right flanking sequence: Indices 1066148 -- 1066647
ATGGACAAGGCTCAAGCTTTTTATTGACCATCTCAGAAGACAGGTCATGATCCGCAGAGTAAGTC
CGATGTTCTAAAGATGGGTTCATTTCCTTTCCCACGGCATCTTCTTCTGGTTCAGCAAGATGAGT
AGTCCATGCCAGGAAATTTCATAAGTGAAGAGGCTGATGAGTAGAGGAAGTGAAAGCTGTTTTCT
ACTTCTGTTGGTTCTTCATTGTACAAGGATTTCGTATGAGCTAGAGGTAATGCTCCAGTTTCAAT
CTCTTCCCTTTACTTTCATAAACTACCTAATTAGTCTGCAACCGGGGGTAAGGACTGGTGACCTT
TTCTCACAAGAGCAATCATTCAACCGGGAAAGATTGAATTGCGTATAGAAAGGAAGCACTTCTCG
GAGCTGATGTATATGAGGAAGTCAAGGAAACTGCAAAGCAAAAGCACGACAATCGCCCTAACAGC
TCTAGTTCTTGCTTCATCTTCAGACTATTAAGGCTTGGGAATCAG



Found at i:1070361 original size:23 final size:23

Alignment explanation


    Indices: 1070331--1070377  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1070321 GGGGACAGAG

                                   
    1070331 GAAAAACCCGATCTATTAACTAA
          1 GAAAAACCCGATCTATTAACTAA

                                   
    1070354 GAAAAACCCGATCTATTAACTAA
          1 GAAAAACCCGATCTATTAACTAA

             
    1070377 G
          1 G

    1070378 CAGTGGAGTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.47, C:0.21, G:0.11, T:0.21


Consensus pattern (23 bp):   
GAAAAACCCGATCTATTAACTAA

Left flanking sequence: Indices 1069831 -- 1070330
ATGTGGTGGATAGGGAGAAGTTCTTTTCTACCTCTTTGTTGTAGGTGTCATCGGTTAACAACTCT
TAATCTGTTAGGAAGACTTGTTAGGTGTAGTCACTTAGATGAAATTCCGTACCGTCACAGTTGAA
TGGGGTGAGTTATCGCGCCCTTACGTTTTCCAGCTCGGCAGCCTCCGGGAGTGTAGTCAGCTTGA
CTTATACTTATTTCTAATTTGCTTCTAAAATAGTCTACGGCCTGTGTCTGAATTCGATGTAGTTC
CGTCAACCTTCTATTTCATTCCGGCTTGACGTGATAGGGGACTATGAAAGCCATCAGGTTCCAAA
CCCTTTGATTTTCTTATGTAATGTATTCGGGTCGAGCTCGTAACACTTCCCCTTGTTTTAGAATT
CCGGACTGGGCCTTAGCGTCGCGCTTCTCCGGTGAGTTAGTAGAAGCTCTTTCCGGTCTTGCCTT
AGAATAGGACTTACTCATACTTGTCTGATGGCGTTGGGGACAGAG


Right flanking sequence: Indices 1070378 -- 1070877
CAGTGGAGTGGAAGAATTCAATTCATAGTCTAGAATCAGAAGCAATAAATAAATAGGCATAGGCG
CCTGAAAGAGCTTATGAAGAATCTGGGGACGAAGGTAAAAGCGAAGCGAATAAGATTTTGTAAGG
CGAAGGGGACGAAGTAGATGAGCCGCTAGGCGAAGGGTACGAAAGAATGGTTGATCTAGTCGAAT
CACGGGAAGCTTCGAGTCGGAGTTAGCCTTTTATGCTAGCTATCGAGCTAAAGGTAGAGAGGGGA
GTTCACGGCTATGGCGTATGGGGAAAAGGAATATGGATTTTCACAACCTAGCCCTTTTGCAGAAG
ACAGCCTGATCAAAGCGAGACCCCTGATCTGATCTCGGGACATCGACTAGAGAATCAAAGAAGAG
AATAGAAGATACGAATCGAAACTCAACTGCGCAATAAAAAAATCTTCCTATTCGATCGATTGGTT
GGTTAAGCGATTACGTGAAGAAAGACCTTTTCTCAAACAACTAAT



Found at i:1071728 original size:16 final size:16

Alignment explanation


    Indices: 1071707--1071738  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

    1071697 GGGGCAATAG

                            
    1071707 GAGACAATTCTTTTGT
          1 GAGACAATTCTTTTGT

                            
    1071723 GAGACAATTCTTTTGT
          1 GAGACAATTCTTTTGT

    1071739 CTTCTCAACT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44


Consensus pattern (16 bp):   
GAGACAATTCTTTTGT

Left flanking sequence: Indices 1071207 -- 1071706
AGAGGGTAAGGCAACGAAGGAGTATCCGATCTTTGCTCGTGGTGCGTCGGTGCTTAAATAAACGA
ACATCACTCAATAAAATAAATATTGTAATAGAAGAGATCTAACCCGATCGAGAAAGGGGGGTCTG
GTCCGATCGTTATATGAATAAACAAGAAAATAAACAATAGAAGATACGAATCGAAACGAATAAGA
AACCCAAAAGATAATCCTATGAACATGAGGTGAATAGAAGAAAGAAAATCGAAACTCATAATCAA
AAAGAGAATACCGTGCGTGGTATGGGCCAAGAAGATCGAAACCTACCCAAGAACGACGCCATTAC
TTACACTATCCTCTGTTTGCATCATAGAATCCTACTCCATGCTAACAACTTATTTTTCTCTAGAA
GCTCCATTGACTCCAACACCCAAACTGCTACCACCCTATATAATATTTTTATCTTGATAAGGGGG
AGGAACCCATATTAGGAAGGGAAGTATGTGTTGCTGGGGCAATAG


Right flanking sequence: Indices 1071739 -- 1072238
CTTCTCAACTTGTGTGGTACGATCAACAAGATTCGATATATCTGCCAGGGCGGAATCTTTCTTCA
TGACTCCCGAATTAGACTCTTTGTTGGCCAGAGATTGAGCAATTTTCACAGAACCCACATCAGAA
GCCCTTGTTAGAACCCGACTTTGTGCATAGCGAAGCTGCATGCTGGAGCCCTTTCTTGAACTTCT
CTTTTGCCCCCTTGTTCTCTCTGAAGTCAGAACGCGATTTAGCACCACCATAAGCAGGTATTTCT
TCAAGTGTGCTTGGGACGAATTCACCCTTCTACAAGTTGACCTCCTCTTCTTGAAGGACAGCAAA
ACGAGAAACTAAGTTGCTGGCTGTATTAGTAGCAGTAGCCGAAACCGCAGCCCCTTTCACAACTT
TATCAACAAACAGGTTCAACTCTTTGCTTAGACGTATGTCCTTCCTTCCCTGGATTAGGCTTACG
ATATCCCTTTTTCCCAATCATCCAAGGATCGAACTTAACATCTTC



Found at i:1075914 original size:27 final size:27

Alignment explanation


    Indices: 1075884--1075938  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

    1075874 TTGCTCGCCC

                                       
    1075884 GAATCTCCTATCTCTCAGTTTCTTTCT
          1 GAATCTCCTATCTCTCAGTTTCTTTCT

                                       
    1075911 GAATCTCCTATCTCTCAGTTTCTTTCT
          1 GAATCTCCTATCTCTCAGTTTCTTTCT

             
    1075938 G
          1 G

    1075939 TCTGTGGGAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.15, C:0.29, G:0.09, T:0.47


Consensus pattern (27 bp):   
GAATCTCCTATCTCTCAGTTTCTTTCT

Left flanking sequence: Indices 1075384 -- 1075883
GCTTCGATTTTGCTGAAAGAAGGACTTCGTTGACAAAGATATTGGTTACATAAAGCGTACTTGTC
CATATTACTGGACCCACTGACGCTTTTCCAAAGCTGCTCCCATTCCTCAAAGCCCGGCAGCAGAG
TCAACCGGTCGGTTCATGAGCTGCCAAAAGCGAACTCTACGCTCGGTAGCTACCGGCGCTTCCCA
ACTCGTTTCAGTCAACAGATGCCATAGCCCTCGGCCCTTGTTTACAAAACTTGGCTATGATTCAC
ATCGAGAAAGAGGAGTGGAACAAATACCTTCCAAGTATATCGGGACTCTACCTATTTGTCTTGCC
CTGGGCTTACGTGACGATTGAGGATTTGAGCGAGAATGGTAGAAAAGAAAGTCTTTTTACAGAAC
GATAGATGAGATCTTTTCCTCTTCTGAAAGGTTCGAAAGAATGGCTATTCTCTTACTCGTGTCTT
GGCCACAGCTACTGCTACTGCTCATAGTCTCGGACTTGCTCGCCC


Right flanking sequence: Indices 1075939 -- 1076438
TCTGTGGGACTGGCTGACTCTCAAACCCGGCTTACCTTACTTATGATATTTTATATCCCATTGGC
TGACTCATTACTGGCTTAGAGGTTAGAACGTTTGAGAGGGGATTTCCCATCATTATTCTATCTTT
GCTTTATTTACTGCTTACGGATACAAGACTAAGGTTTCAAGATCTTAGTACATACTTGTGCTAAG
GAAGAGAACCTGGTTTTCGGGTTTGATTACTAACTCAAAGTCTGCTTACAGGGTTAGCTTACTAC
GCTGGGTATACTGGATTAGCCGGTTTGTCAGCGGCTTAAAAGAACCTTCCTTTCTTTTCCCGTTG
GAAGCAAGCTACCTCACTACTCCTTGCTGGTGAGCTTACTTCTACAGTACAACGCGGGGACTTAG
ATATTCTATATCTTTTTGATCTCGCACATCTAATAGAACCAGGAAACTAGCTATAGCTCTTGCGC
GCTTCCCTGCTTACTCCACTTCCCTCGTGTCAGCGGGATAGAGTA



Found at i:1080012 original size:26 final size:26

Alignment explanation


    Indices: 1079976--1080027  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1079966 GGGGGTCATT

                                      
    1079976 GGCTATGGCACCCGATCGAGCTCTGG
          1 GGCTATGGCACCCGATCGAGCTCTGG

                                      
    1080002 GGCTATGGCACCCGATCGAGCTCTGG
          1 GGCTATGGCACCCGATCGAGCTCTGG

    1080028 CTGCTGCTAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19


Consensus pattern (26 bp):   
GGCTATGGCACCCGATCGAGCTCTGG

Left flanking sequence: Indices 1079476 -- 1079975
CTAGTCAGGTGAAATGCTTACGATCTTGTCAATTTGAAAGGAATCCTTTGTAGGCATAGCTGGAC
GAATCCCTATGACTTAATAAACATAGGCTAGGCTTTGAGGCTAGCTGAGTACTTATCAACAGCAA
CAGAGTTCAATATAATAGTTGTCCGAGTCAGGTAGAGAGTCCTCAATAAAGAGTCATCCATCATA
ATTTCTAATCCTTTATACAATTCATCCGATTGTTAGAATCAATTAGACTTTAGCTTTTGCAAGAG
ATTCGATTTCGAGAATGGGGCTACTTCCTCATTCGCTGCAAACCCATAGAACCGCGTAACCGCCC
ACCAATACTGGAAGTCAGAATGAGAACTAACCGAATCCTATCTTTGGAACGAGGACATACATGCG
TACCTACGATCCCTTCCGTCCCCTCTAACTCCTCAAAGCCTAGAGGTTCAGTCCTTCGAAAACCC
GAGAGTCTTCAAGAGCTTAACTCAATAGGTAGAGAGGGGGTCATT


Right flanking sequence: Indices 1080028 -- 1080527
CTGCTGCTAGTCTTCCTTCTCCTTCCTGCCTCTAGTCATGGGAAAAGGTGTCTGGCACTTAGGTT
GAACACGAGGCTGTTGTATTCCAGTAATAGCTTGGCACCTCCCAAATTCCTTAGAATAGGAAAAA
GCAAACGAGGAAGTTTCAAAGGGCCGAATAATTTGATCCTCAAAGACAGCACAGTTTATGCCTCC
CCAAATCGCCCAGGCAGTAAGCAAACTAACTCGAAGCCAGTCTGGATTTTTGTCAAGATTAGCCT
CCTCTCGCGCCGGATCTTCATCGTGCGGTATTGAATCATCATGAAGAAAGAGTTCCCAAACATGA
GACCATACCTCTGCTGCAAAAGAACATTGCTTGACAGCATGAAGACATCTTTCTACTTCTTCCTT
ACACCGAGGACAAGTTCGATCAACATCCATTCCCCTCGCATGGGGGTTGTCCATAACAGCCAATG
ACTCGTGAAAGAGGCGCCATGTGAAGATTCTTACTTTCGTCGGAA



Found at i:1084624 original size:15 final size:15

Alignment explanation


    Indices: 1084606--1084635  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

    1084596 TCATTTCGTC

                           
    1084606 GTTGCTCATTCCCGT
          1 GTTGCTCATTCCCGT

                           
    1084621 GTTGCTCATTCCCGT
          1 GTTGCTCATTCCCGT

    1084636 TAGGCCGAAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.07, C:0.33, G:0.20, T:0.40


Consensus pattern (15 bp):   
GTTGCTCATTCCCGT

Left flanking sequence: Indices 1084106 -- 1084605
TGGGTGTTTCCGAGCAGCGGGGCTTACACCCATTCGCATTAGTTCATCCAAAGTTCCTTACCCTT
ATGCACGAATTATTGAAAAAGCCATCTTCCTATCAAGGTTAAGGAGTCAACTGAGCATCTCAGCG
GCGGGATTGAATACCCGAATCGAATCAGAGTTCACGCCGCCCGCCCTGAACAAATAGGAGGCGTG
GGCCACAGGTCGCACATAAGCCGCCAGGTCGCACGACAGAAGAACACCCAACATACAGATGCACA
CTCCTCCATGTGAAATATTCATCCTCATTGGAGCTTTTTGGTAGTAGTCGTGACCAACAGACATA
GCCATCAGCTGTCGGCTCGTTGGTAAGGCGATAGCTTCAAGCCCGATTTCTGGTGGCATATCCCC
TACACAAGCACCACCCGACGAAGGGGGGACGGGGAAAGCTACAGGCCCAAAACCTTCGACCCTTA
CTTCTAAATGGGGGTGCCCGGAGCACCTCATCTTGTCATTTCGTC


Right flanking sequence: Indices 1084636 -- 1085135
TAGGCCGAAGTGTTTGGACTTTCCTTCTCCGCGCCCGTTCATGCTTCGCTGACCTATCGCGTGGT
AAAAAGAAGAAAGTACTAAAGAATAGTAAACGGAGCACACCGCAGAAAGATTCTAAATATGAGAA
GTCCCCCTTGGATTCGAGAAGAAGAAAATGAAGAACAGGAACGAAACGAAATAAGGCGTTTCTAG
CTCTAGTTTCGGATGAGCTTCTCCCAATTATGTCTGGTAATAGAATAAGGCGGCTTGCTCTGACC
AAGACTCCACTTTTTTCTCCGTCCATGGAGCGTATGAATTTCCTGGAATGTAGATAGACCAAAAG
AGGGAATAAAGAGATAAGAATAGGAATTATAGTACCATTGAAAAAAGGGGCACCTGTGGAAACAT
CTCTACTGACAAACCATTGAAATAGTACGGGTGCTGCCGTGCCACGAAGCACGACCATAAAAATA
ATAAAAAAGAAAAAGTTATGTAGTTGGACCATCAGCTCTATCCGT



Found at i:1086069 original size:23 final size:23

Alignment explanation


    Indices: 1086039--1086086  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

    1086029 AAACTGCCAA

                                   
    1086039 CAAAGGTCTGTTGGGTTTATACT
          1 CAAAGGTCTGTTGGGTTTATACT

                                   
    1086062 CAAAGGTCTGTTGGGTTTATACT
          1 CAAAGGTCTGTTGGGTTTATACT

              
    1086085 CA
          1 CA

    1086087 GTTGATTTGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38


Consensus pattern (23 bp):   
CAAAGGTCTGTTGGGTTTATACT

Left flanking sequence: Indices 1085539 -- 1086038
CCGCTGCATGCAACCTCTGCGAAAATACTGATTTCATCGAGGGTTGTACTACTGTTTTCTTCAAA
AGAAGGAAAAAAGAGACTCAACTTCTTTTTCTCGTAGCGCCTGATGCAGAGAGACCGCTACGCAA
AGATTCCCCAATACCACTCAAAATCCTCCGTACGACAGCCCTGCCCTCTCTAGGCTAGGCTCCTC
TCTTACATCAACTAGATCCACTCCCAAAGAAAAGAAATTCCTTTTTTTACCGGCCAATCCTAATT
TCAAATAAAGCACTCTTACTCATTTGTTTCTTCTTGCCTTCTTTATTAGTGAAGGGGATCCTCGA
GAAAGCCCTTTGTCCAATTCTGTTGAATTTTTGCATATGGCGATGTTATTTCCAGCCAAACATGC
CAGTGGGATTTCAATCTTATTTTTTTATTTTTCTTTTCTCGCCTGAGTACTTGTTGCCGCAGAGC
TTGCATTGGCCATTTGATCTATCAAATTTGGTGGAAAACTGCCAA


Right flanking sequence: Indices 1086087 -- 1086586
GTTGATTTGGCTGTCTTATTATTAGTTGCTGTTTTGAATTGGTTGGGAGACACAAAGGGACTGTC
CAAAAAGAGATGTTACAAACATGGTATCAGAGCCTTGATTCTGCCAGCCGTGGGTGTGGGAAGAG
GTGTCCTTTAGGTACATGCCAACTGTTTGACAAAAGGCGCTTTCAATATCAGTGAATTGGTGCTT
CAGTATGGAATTTGGTCAAACCAGCGGTTAAACGGTTTTTGAAAGAGTGTCATTAAAGTTTCATC
TAGATTGAGACTAAAAGAGCTGTTAGCTAAGCTTTTGATCTTCTTTGCTTCTCCTTCTCTGTATA
GGATCGATAAGTCATATCCGTTTTCCTATTTTATTTTTTCGGCTGGTTTTCTAAACACATTTCCA
AGGGTCCTTAGCATTCGTAATTCTTATCTAAGAAACTAGAAAGAGAGAGGTTAGTTAAATAAGCA
TAAAAATAAGAGTAAGGGGGCCCCGGGGTAGCATGGTTTTTCCAT



Found at i:1090552 original size:25 final size:25

Alignment explanation


    Indices: 1090522--1090571  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1090512 TTGAACCTAG

                                     
    1090522 TAAAATCGCTCTTAAGCAAGGTAGT
          1 TAAAATCGCTCTTAAGCAAGGTAGT

                                     
    1090547 TAAAATCGCTCTTAAGCAAGGTAGT
          1 TAAAATCGCTCTTAAGCAAGGTAGT

    1090572 AACTTTGGCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28


Consensus pattern (25 bp):   
TAAAATCGCTCTTAAGCAAGGTAGT

Left flanking sequence: Indices 1090022 -- 1090521
TAGGGGCTTAAAGACTCGCTAACTACTCATCATGCCCAATCGGGATTCTTTCAGGTATTGTTTTT
CAAGGGACTTCAGTTAGAGGATTTTAGCATGCCCCGTAATGAAGCGCAGGTGAGCTCTTCATCCT
GATCGAATTCCTTAATGCCATGATGCCGGAATAGGCTGTTTATAAGCTGGGCTGTAGAGTAGTAG
GGCATCCTAATGAGAAGAGGTGCGAGGATAGGTACCCGCCATGCGTATTTCTTTATGAACCCGCG
GATGAATCCTTTTGCCTTGGGGTTTTAGTAAGTACTGTGTTCTCTTACGGTCGATAGGATTCTGG
TTCACCGAAAGGCGCTTTTAAAGCATGGAATAGGGACAAGCTAACAAAAAAGATGGGGTTTACTC
AAAGTCGAATTCTATTCTTCAAAGATTTAGGATTGAACTGAAAATATACGATATTCATAATTGAA
ACTACCTTTCTTACACCATTCCTTGAATAATCTGGTTGAACCTAG


Right flanking sequence: Indices 1090572 -- 1091071
AACTTTGGCCCCTGAGAGCCTAGTTCTTGGTTCGGCTAGAGGCTCGTTAAGACCTCATTTTCTAT
TACTTCTCAAGTTGAGATAAAGATTCCCCAGAAAAACCGATAAACGACGGATCCGATCTTGTCGA
CGAAATGTAAAATTCGCTTTGTCTCGCTTCTTCATCTTCACCTTTCAGCTCAGCATTACTTCGTC
CCCTCAACCCGATAGAAATATTCCTTGACGGTATTTCTCAGAGGCTAAAGTCTTGCCAATCAGCA
TTCCATCAATTATGCATTTTGCCCACTCGAGACTAATTAATTAGTTGGGTGAGAAAAGAAAAGGT
CAGTTCAAGAATACGCACTTATTGAACATCCATATTCAGGGCTTATGACAAGTCCTTTACTAATC
AAAGTGATCAACTTGTAATTCTTTTTAGGAAAGGAAATCTCAAAGTAAGCATTTTTCCCGGTGTT
TTATCAAAGTTTTCTATTTTTCATTCTTTTTCCTACCGTAATTAG



Found at i:1093394 original size:19 final size:19

Alignment explanation


    Indices: 1093370--1093426  Score: 114
    Period size: 19  Copynumber: 3.0  Consensus size: 19

    1093360 GGTCTTCTTT

                               
    1093370 GTTAATAGACATGTAAATG
          1 GTTAATAGACATGTAAATG

                               
    1093389 GTTAATAGACATGTAAATG
          1 GTTAATAGACATGTAAATG

                               
    1093408 GTTAATAGACATGTAAATG
          1 GTTAATAGACATGTAAATG

    1093427 TGAGACGAGA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   38  1.00

ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32


Consensus pattern (19 bp):   
GTTAATAGACATGTAAATG

Left flanking sequence: Indices 1092870 -- 1093369
GTCTGATCATAGAAAAGATTCTCTTCAAGCGAACCAGCCTATCCTTTGTATGGGGCTTACACGGT
GGTTAGAACAAAAACACATTTGGTTGTGAATTTCAATGTAGCAGATAAAAGCATATTTCTGCACG
GCCCAATCAATAGTTCAAGTCACACACTCCCATAATCCATTTTCTCTTCGGGAGGCACTGTCATA
CTCGGAATTGAAGTACTCCTTGGCAGCAAACCATACGAGAATAAAGAAGCATAGACCTAGACACT
CACGAGCCTTCCTTCAAGAGGCCCTTAACGAACAGGTCCTTTTTCGAGCTGATCTAGAGGTCAGA
CTTGCAGAGCGGTAGCGAACCCTGCTAAACTCCCCGGCCCAAGAGCGGTAGCGGCGCTAGTGGAC
GAACTGGGGTAACCGAAGGGGATAAACTCCCGGGCCTTATCCTCGAAAATGGGGGCGAACTCCTC
ATGCGTGAGCCACGCCGCTTCAAACCGGAAGGGACGGTCTTCTTT


Right flanking sequence: Indices 1093427 -- 1093926
TGAGACGAGAACATAATGGGATGATGATCTGAACAAAGGCTAAGAAGGGTAAAGACCTTGCTGTC
CGGAAAAGCCACCACCGCATCATTGTTCCAAAGAACTCGATCAAGACGTTCTTCCAACACAACTC
TACCATTGCATTTGCGAATCCAAGTAAACGAGCCAACAATACAACCAGGGTCAGCTAGGTTTCAA
TCATTTATCCGTTCCCTGAACTGTAACACTCTGTTCAAACAAGACCCAGAGCCACCCTTCCTTTC
GGCCAAAAAAGCGAAGTCATTAAAATAGCCCATTACCAACCACGGCTTATAAACTGAACCTGCAA
ATACCTGAAAAGCATCCCAAAACAATTGTTTACTAATTGAACATGGTTGAACATAAACAAAAGAA
AGAAGAAAACATGAACCCCCTCTCGATATTTCGGTGTGAATACACTGGTCCTAGACCGAGGAGAT
AGCCAACTCTAAATTATTTGGATGCCATAAGAGAATCAAGCCACC



Found at i:1096719 original size:19 final size:19

Alignment explanation


    Indices: 1096695--1096734  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

    1096685 ATGAGACACC

                               
    1096695 AGCAGCAGTTACACCTAGT
          1 AGCAGCAGTTACACCTAGT

                       *       
    1096714 AGCAGCAGTTAGACCTAGT
          1 AGCAGCAGTTACACCTAGT

              
    1096733 AG
          1 AG

    1096735 AGCCACAGAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.33, C:0.23, G:0.25, T:0.20


Consensus pattern (19 bp):   
AGCAGCAGTTACACCTAGT

Left flanking sequence: Indices 1096195 -- 1096694
TCAAAGCATGGGATAAGGCATGAGAAGACAGAACCTGGGACACCAAAACACAATGGTGTAGCCGA
GAGGATGAATCGAACCATTGTGGAGAGAGTTCGATGCATGTTGAGAATGGACAAATTGCCAAAAT
CCTTTTGGGGTGAAGCAGTTACCGCAGCTTGCTACCTACTCAACAGATCACCATCAGTTCCTTTG
GGCTTTGACATTACAGAGAGGGCATGGACAGGCAAAGATGCTTCGTATTCTCACTTGAAGGTCTT
TGGTTGTAAAGCATTTATGCATGTGCCGAAAGAGCAGAGGTCAAAGCTAGACAGTAAAGCCACTC
CTTGTGTGTTTATTGGGTATGGTGATGAAGAGTTTGGCTACGGGTTATGGGCTCCAGAGCATAAA
AAGGTTGTTAGGAGCGGAGATGTGGTTTTCCATGAGCAAGAGACCATAGCCGATTTTGAGAAGAA
AGTGAAGACTTCTCGGGTTGTTGGTGAGTGTGATGATGAGACACC


Right flanking sequence: Indices 1096735 -- 1097234
AGCCACAGATGGTGGAGATACAGAAGGGGCAGAACTTGAGGATATAGATGAGCCAGCCATAGTTG
GTGATGGGTTAGATGCCGATGATGACATTGCACAGCCAGATGCAATGGGTATTGAGCAGAGGGAG
CAACCTCCTCTGCAGGAGCTTAGGAGATCTACTATATAGCATCGGCCATACACGAGGTATACTAT
TTCTGAGTATGTTTTGCTTACTGATGAGGGGTAGATATCAAATAATATATCCCTCAGCGACGACA
CTTCCGGAGTTGCGAGCCTGGAGAACTTAGGCTGATATGAGCAGCAGAAAGAAAGGCACGAAACC
GATCGGTGGTTCAAGTTGCCGAAGGAGTCAACAAGCTTTGTGACAGAATCATGGAATTCAATTAA
AGCATTGAAGCCGGTGGAACCCAAATGGGACTCCTTCACGTGGTCTAAGAAGGCCGAAGAAGAAT
AGCTTGCAGGTTAGACAGAATTATGGTTAACCATGAGATTGTAAC



Found at i:1098395 original size:13 final size:13

Alignment explanation


    Indices: 1098377--1098401  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

    1098367 AACCTAGGAA

                         
    1098377 TAATAGTGTAAAC
          1 TAATAGTGTAAAC

                        
    1098390 TAATAGTGTAAA
          1 TAATAGTGTAAA

    1098402 GTTCTAAGGA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.16, T:0.32


Consensus pattern (13 bp):   
TAATAGTGTAAAC

Left flanking sequence: Indices 1097877 -- 1098376
AGCCATCAATCGTGGGGCTGGCTAAGCACTGGTCCCATCCAGAAAGATAGTTCATCAAGATTCTT
ATTAAGACTGTTCCTGTTCAAAGTAGAATCTACTTCTTATTACTGCAAATAGTTAGATACGAATT
CATTAGAATGAAAGTTCCCTTATATACTTTATCAATTCCCTTTCGATAGGGGAACGAACAACCTG
TCATCTCCTCAACCAAGTCTCGTTAGGACGCATGATTTTAGCCTTCCTATGGTGCTGATAGAGTA
CAAGGGTCAGGCCATAATGTCCGCCAGGATGTAAGAAATTTATTGACTCAGAAATTTGATGCTAC
AACTAGTCCAAATACTAATCCAAGTGCCTATGTACAGGAGGCTAGTATGCTTGCAAAAGGCTCGG
GGGGGACCGGAGAAAGACCAGGATTCACTTCTGTTCTTGCAGAAGGATCCGACGTGGTATTAATA
GAAAAGAAAATGTAACTTGAACTTCTTAAAGCTAGAACCTAGGAA


Right flanking sequence: Indices 1098402 -- 1098901
GTTCTAAGGAATCTAATCTGTATCGGTGACATAACCTTACTTTCGAAAATCATTCTTTCTTCATA
TCCATCTTTGAGTCATTTTAAAACTAATGCCACATTTTCCTACATATGAACTGCACTTATAGGCA
AGCACTAGCAGTACCACTAGGAGCGGTAAGGATAAAGATCCTAAATCTGTCTTTTTCTGGGTTAG
TTATGCTAGCTTCGGTAAAGTAGCTATTGTTCCTAAGCTTTTTTAGTAGTTATTTTTCTTCTCTA
GTCTAGTAAATCGCTAAGTTCAGTTAATTTTCGCTGTGTAACCCAGTAGACATGGTTATCGTATT
TTCTTTATGACTTTCCCTTATTGTATTGTATTACCTGGGTGCACTGCGTTATTTGACCCTTCTGG
GCAATCCAGTTTCTCGTATTTCTACTCGATCTAGTCTCTACTCTACCTTTTTACGTTAGTTTCTT
AGCTACGGCATCTCGCTCCGGTCGTGTCATTCTTTTAACACTTCG



Found at i:1099621 original size:26 final size:26

Alignment explanation


    Indices: 1099585--1099637  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1099575 GAGTAAATGC

                                      
    1099585 GTGAGACCTATCCTCTCTCAGGTCAG
          1 GTGAGACCTATCCTCTCTCAGGTCAG

                                      
    1099611 GTGAGACCTATCCTCTCTCAGGTCAG
          1 GTGAGACCTATCCTCTCTCAGGTCAG

             
    1099637 G
          1 G

    1099638 ATGGATGGTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.19, C:0.30, G:0.25, T:0.26


Consensus pattern (26 bp):   
GTGAGACCTATCCTCTCTCAGGTCAG

Left flanking sequence: Indices 1099085 -- 1099584
AAGGCAGCTATGGGCTATGGTTTTTATTAACCAGTGCATCTCACGTTGCTCAGCTAAATGCCTTT
TTTCTTTTTATAACTACGACTCTTTGCTCGTTACACTCACAAGCACGTCTCATTTCAGAGCACTT
CTTCAACACAACATAGCTCTACATCTTCGGGGACTCAAGTTGCCTTTGTGGTTCTGGTCACAGCG
AACTTGTACAACGACTTTCATGCTATAGTCGATAGATCTCGACGCGGTTTTCCGGATTCTGTCAG
AGTGCAGGCAAAATTCCATTTGCTGCAGGCATGGTGCGGGATAATTTTCCGAATGAATAGAAGAG
CATCCCTGAGCTATTCAAGAGGCGCATCGTTTTAAAGAACAATGTCTTCCATTGAAATGAAAGTT
TCAAAAGGCAAGCTGGGGAAAGACAAGTTAGCGCTCTCCTATTCTGGCTAGTAAGTTTGTGCAGT
CCGGCAAGCTAGCCAGTTAAGTTATATGACTAATTGAGTAAATGC


Right flanking sequence: Indices 1099638 -- 1100137
ATGGATGGTTGTTGGCCTGCTAGCTCGGAAAGCCCATATTATAGGTTAGGCCCTCCAACTAGGGA
TTGATAGTTCAAGTTTTCTCATTGGGGAAGGAGTCTTGCATATTTCCTTCTTACCCGACTAGTGG
AGTAGCATATTTCATCCTTCCTTTTCGATTGAAGTCTGCTTGCTTATGCAAAATGAGAATGGAAT
GTGGATTCGAGGCGCTCCGGGCAAGTTCTGATTCAGCATCGTAATATAAGAGATGCTTTTTCCTC
TTACCTGGCTTCCTTTAGTGAATATAAGGTTTAGCTCATATTAAGGGACCCCAGGCAAGCTCACA
TATAAGCTGTAGTTAGGCTAGGTCGAATACCTACAATATAGAATTTCCTATAGCCAATGGTACTT
TCTTTCCAGCGGTTCCTTTTCATGTCCGATCCAGACGAGCCTTTTCTAGTCCTTCTACTTTCGAG
CAAGTTGCAGTTGCAGTCTTTTCTAGGGCAAAAGCAGGAATATTT



Found at i:1103305 original size:23 final size:23

Alignment explanation


    Indices: 1103275--1103320  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1103265 TAATGACTAC

                                   
    1103275 TACGATAGTTCAGACTTCGCTAA
          1 TACGATAGTTCAGACTTCGCTAA

                                   
    1103298 TACGATAGTTCAGACTTCGCTAA
          1 TACGATAGTTCAGACTTCGCTAA

    1103321 CGCTCTTCAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30


Consensus pattern (23 bp):   
TACGATAGTTCAGACTTCGCTAA

Left flanking sequence: Indices 1102775 -- 1103274
ATGGCTACGCTAACATCATAGTGGTGGTCGATCCCTTCTCCAAGTATGCTACCTTCGCCCCTTGA
CTAAAACTCCGGCGTCCTGTCTTGGACAGTAGGCGAAAGGCTTTGGCGTGGCGTGCAATATGGGC
ATCTCACCCTTCTTCCAAAAAGAATGCATTGGTTACCGATCTAAAAGGATTCCACATGAAATAGG
CCTGGCAGTGCAATTGTCTGAATCCTAAGAAAGGTAGGGCAGCGAAAGGACTAGCACAATGTGAC
AACGTACACGCTTCCTCGGCCTCTCTCCTGATATAAAATCGGCAACCATATTCCCTTCCCTTTGA
ATCGATACCCCGCATCTCTACTTCCACTTATTATTTCTCTACACACACATGCTAAAATCTGCTGG
TGAACCGCCTTTCCTTTCTTTGATCCCTACATTCTCATTCTCAAGTCTACCACTTCGGAATCATT
GGAAACCTTAGTTGCATAAACCCTGTTATTGTATTTAATGACTAC


Right flanking sequence: Indices 1103321 -- 1103820
CGCTCTTCACTAGTAGATAAAGTACGTACTGACCCGGGTGAGTTCCGTAGAGAAGAGATAATTAC
CTTCGAGCTTGTCCAGTACTAGGCGGCATCCCCCTCTCGTATTAGGGGTTAACGCCGCTGGAAAA
GCGGATCATATATGATATTCATAGATCATAGAATCGTTGTCTCCTCTATTCGATAAGAATTGGGA
TGTTATCATCGGTGAAAGATTCTTTGCTTTCTCTTGATCTAGAAGGGATTGATTGTGATTCATTC
TCCTCGGCAGAATTCTTCCTGTTCGCCTATAGGCTTGCAAGCCCTTCGATAGCCCGTAACCCTCC
CTTCTCCGCCTGAACTGAACTTCGAAAGCTCTTTTTCGACTATCTCTTAGCCTCACACGAAACTA
ATCAACGTACTCTTCTTTCTAAGCTATGCGATGAAGCGGTATTCGGACTCAAAGCCTTTATCGCG
ACCCTTTCGAAAAGAAAAGAATGTGTTTGGTAGCTGGACAGTAGG



Found at i:1104309 original size:24 final size:24

Alignment explanation


    Indices: 1104282--1104329  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1104272 ACCTCCCCGA

                                    
    1104282 ATCGAAGAATCTGATAAGTAAAAT
          1 ATCGAAGAATCTGATAAGTAAAAT

                                    
    1104306 ATCGAAGAATCTGATAAGTAAAAT
          1 ATCGAAGAATCTGATAAGTAAAAT

    1104330 TGGTGAGTTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.50, C:0.08, G:0.17, T:0.25


Consensus pattern (24 bp):   
ATCGAAGAATCTGATAAGTAAAAT

Left flanking sequence: Indices 1103782 -- 1104281
TCGAAAAGAAAAGAATGTGTTTGGTAGCTGGACAGTAGGAGTTCATTCTGTAGGTGGGCCTGTAG
CACGCATGCCAAGGATAGCAGTCCCAGGAGGGGGGTTAAAGCCATCCGCCAGTCAGCTAGCTGAA
GTTAGAAAGTTAAAAAGTAGCAGCGACTTTTGCTAATACCGGGTTTTTCCTCAAATAAAGAAGTT
AAAGAAAAGTGATTTGTTATCAATGTCAGCAAAGGAAGTTGGGAGAATGTTGATCTATTGACAGA
TTAGGAGAGGGGTTGTTTGGAATGAATCGGAGATACAACCCAGCCAGGTATATTATTAGCCTATG
CTCGCCTCTCGGGAAATGTAGTCAGCCTGTTCTTAGCAGGCAGTGAACGCTTGCCGGAAGCGACA
AAAGGTGTTCATTCAATTAAGGGGGAATGCGCGTAGCATCCCCTTGTTCTTTTGAAAGAGTCATC
GGCTTACTCCTGAAAAATCCAACTCTCTAAGCGATACCTCCCCGA


Right flanking sequence: Indices 1104330 -- 1104829
TGGTGAGTTAGCCCTTTCTTTATGAACCTTTCCTAGAAACTTGTCCGAGTCATGGGATGGCTCGC
GATCGAAGGTTAACCTTACTTTATGATGCAGCTCGAGCAGATTCTGAAAAGGATTCACTACTCAG
GTAGAATCACTTTAGGTATCCCGCATGTATGCAAGAAGAAGAAGATTCAGCTATTCATACTACTT
TCTAAACGGGAATTCCGAATTGCGTAGAATGAATTGCATAAATGTCTTTGCCCCTAGCCCGCCTG
CTCACCACTTTATAGACCCTTTCCCAGGCTTCAAGTTTCAAGTATGACCTTTTCATCGCTTTCAC
TACTCGGCTATGAAAGAGAGGGCGTAATAAATCCCGCTTTTGAGAAAGTCAGCTCGGAATCCTAA
TCAACTATTCCTTCCCGAAGCAAGAAACTAAAGGGCGAAAAAACTGCAAGACCTCTTGCTTAAAG
TAAGGGCGTCTCGGTATGCAGCTAAGCCTTTGATTGAGCTCAATC



Found at i:1106931 original size:22 final size:22

Alignment explanation


    Indices: 1106903--1106949  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

    1106893 CATCCAACTC

                                  
    1106903 TCTAGCTCGCATAAGTAATCTA
          1 TCTAGCTCGCATAAGTAATCTA

                                  
    1106925 TCTAGCTCGCATAAGTAATCTA
          1 TCTAGCTCGCATAAGTAATCTA

               
    1106947 TCT
          1 TCT

    1106950 TCCATAACCG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34


Consensus pattern (22 bp):   
TCTAGCTCGCATAAGTAATCTA

Left flanking sequence: Indices 1106403 -- 1106902
ACGTTTTGGACACCGTGATTGCCCATCAATTGTTGGCTCGGCCTCATCATCTGAGGAAGTCCAGG
AGACGGTTGAGAAAGCCAAGACGGGGTAAGCGGGGGTTGCTGGTGGTCCGGAAAAGGAGGTGAGG
CCTGATTCTTCGAAGGTGAGTCCACAGAAGGAGAACGTAGGCATGGGTCCATCTGATTTTTTCCC
CTGGATGATTGCCCAACGCCGTAATCCTAGGAGAAATGCCAAGAATCAAGGTAGTGAAAATGGAA
AAGAGAAGAATGTGGGGAGCGAGAATCGTAGTACAAGATTTTCTACATTAGCGAATTTACAGGAG
TAAGGGGATAATACTAATTAGGAAAATACGTTGCCTACAGTAAAGATAATTCCTACGCAGAAAGC
TGCTTCTAAAAAAGGGGCGCAGAATTTAAGAGGTGGGCCTGGGCCATTAGGGCAACCTTCATTTT
ACAAGAAAGCAGGTGCGGTGCCATTGGAAAATGGTCATCCAACTC


Right flanking sequence: Indices 1106950 -- 1107449
TCCATAACCGGAGCCATACACGATAGGCTTCGGATTAGCTTTGATGAATTGTATCTGCTGGGGAA
TTCGCTGCAGCTCTTTCGCCTCTTTCATCGCATAGCTTTCACGCTCGTGTGACATCATACAATAA
ATACTACTTTTTATAGAAAGTATGCATGCATGTTGTGTCTTTGACCCGTGCCTTTGACACTCGGA
AGAAAAAAGCATTAGACAACAACTCACTTCCTAGGCCGGGAGTAGAACCCAGGAAGAACGGTAGG
ATGATGGGGGTTCCGAAAGGGACTTAAGAATCTAAATCCAATACATACTGAAATGATGTGATAGT
GGAGTGGAAAGGTAATGGGCATTGCACCTTAAATGGTTAACTCAACCTGTGCGCTAAGTAAGGTC
CCAGGCAAGCAAGCATATGATCATATGAGCTAGAGGTACTTCATCTTCTCTCGGTTATTGGACTA
ACTAGGACTTTGGGGAGCTCCTCTGATCATTCTAGTCTTAATGGC



Found at i:1109064 original size:25 final size:25

Alignment explanation


    Indices: 1109030--1109079  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1109020 ACCTCCTGCA

                                     
    1109030 ACAGAAATTCGAGCTGAAAACAATT
          1 ACAGAAATTCGAGCTGAAAACAATT

                                     
    1109055 ACAGAAATTCGAGCTGAAAACAATT
          1 ACAGAAATTCGAGCTGAAAACAATT

    1109080 GATGAATTCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20


Consensus pattern (25 bp):   
ACAGAAATTCGAGCTGAAAACAATT

Left flanking sequence: Indices 1108530 -- 1109029
CCGTTGTAGCTAGTAAATTGAATTCTAAATCGACTCAATTTAAGAAAGCCCGTAAAAGATTCCTT
CTTTGACGTATGGGAGCAGAAGTAACGAGTAGATAGACACCTTTCGATGCTAGTAACCGCACCTT
GGGACATGGACAAATATGGTGGCAGAACTTCAAGCTATACGATAAGGCTGGCTTAGGGATCTAGG
ACAGACAACAACGATTAGACAGAAGGGGCTCTTTAGAGCACGACTGCTAAGTTTGCTAGCTATCC
GCTTTTTTTACTTCCAGAACCATCAACAACAAAAGCATGATCTTGATTCCCGGTTTCGAATGGAT
ATGGAATTCCTCTAGCCAGCTAGCCATCAAAAGCGCTATTGGTTGGTTGAGTCTTTTACTTGGGG
AGATCTTTGCTTGCATTTCGAAAGCAGATGGTGGTCTAGGTTTCAGGGACTTTGAAAGGCCCATC
GGTTCAGAAGAATTCGTACTCAAAGCTGCTTAAAGACCTCCTGCA


Right flanking sequence: Indices 1109080 -- 1109579
GATGAATTCCCCGAGGAAGGTAGCTCAAATGCTGGCTACTTGCCTGGGACCTTAGCGGTTGAGTG
CGTTACCTGTGATGAGACCTTTAGTTAGATAGATTGTCGCTTGCTTGCTTGGTAGATAGGCCGCT
GTAAGAGCTTGCTACTGGTGATTTTGCAAGTGACGGGTGGTATACCAACCGCTGAACCCCTAGTC
GAAGTGGCGTTCACGGTGAGACAAAAAGGAAAAAGCTCCCGGCCAATCGTTCGTGTCCCATTAAT
CCGCCGCCGAAGGTACAGAAAGCCACAACCTACATACTTTTAGCGAACAAGAAGGAGGGCATCCA
AATTCTCCTCGTTGTATATTTCCTTGTGTTAGGGGGGTACTTCTGCCCCAATTGAATCCCGGATC
CGCTACTCTACCTGATGGTTTTAAACCAGCTGTGGGGGATGTTTCCGAGCGGTAGTCTCGGCCAA
GCACTGCACGCCTACCTTTTTTGGAGAGGGAGTGTGCCAGTATGT



Found at i:1111649 original size:20 final size:20

Alignment explanation


    Indices: 1111624--1111664  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

    1111614 TCAAAGACCG

                                
    1111624 AAATCACTTATTGTAATGTA
          1 AAATCACTTATTGTAATGTA

                                
    1111644 AAATCACTTATTGTAATGTA
          1 AAATCACTTATTGTAATGTA

             
    1111664 A
          1 A

    1111665 TGGCGTAGTG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39


Consensus pattern (20 bp):   
AAATCACTTATTGTAATGTA

Left flanking sequence: Indices 1111124 -- 1111623
TTGTCCAGACAGTTCGACTAGATCTTCCCCGGTTGAGGGACAGACTGACAATCCGAGTTCAGACG
GACTTGAGACTTTCCCTCCGAGAACAACTATTAGGGAATAAGTGGGAGATTCTACTAGCTAGAAA
GGCGCAAGTCTCAGAGCTGAGCTTACATCTTAGACAGCCTCACTTTCACTCCTAGAATACTATAT
TCGAATAGAAGACAGATGGAATGCTTGCTATCAGTGCATTATATGTCCTAGTTGTCCAGTACCAA
TCCGCTTCCTGGAACTGCCAAAGCAAAGAAAGCAGGTGGTTGACCCAGCTCTATCCGTAGCGTAG
TTAACAGCCTAGGGAAAGGTCAATGATTTGCCCATCTTCTATCGAAGAAAAACATACCACCATTA
CAGAAGATCGATGTGCCAGCCCATGGCTATGCTCGTTGCCCACAACACAGGAGAAAGAGCAGATG
AAGCATAGATTGTTTGCTCAGAAAAAATGCATCAATCAAAGACCG


Right flanking sequence: Indices 1111665 -- 1112164
TGGCGTAGTGGGATGAACAAGAAGGTCCCATGCTCGCCACAGCGTATGGTTCGATTAATTACATC
ATCGAAGACATCAAGCTACTCAATCACGTAACCCATGGCATTCAATCAAATCACGATTACGTTGA
CGAACCAAATCACGATTACGTTGACGAACTTCTTCGGCTTTGAAGCAGGTTATACAGCTTTCCCC
TTCTATTGGTAGTGTAAATGCAGATTAGGAGAGGAGTTAGTTCAATAGCTTCAGCATTTCACTCA
AGTGCTGTTCAATCTAGACCTTTTAGGTAAGTAGTTGATTTGGAGTACAAGCTTGTCGCTCTCAA
GCGGGTTAACGGGATTTCTGCCTTTTCCGGTTGTTGTAGATGGATCTTCGTAAAAAGTTCACTTG
TCCAAGGAAAGGTTGTAGCTCTTTCTTGTAGGTGGGCGGTTTAGCCTGTAAGATGGCATTCATTG
CTCTTTGATAGGTTGCACCGGCATTTTTAAGTCCAAAGGGCATAA



Found at i:1111806 original size:24 final size:24

Alignment explanation


    Indices: 1111776--1111823  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1111766 GGCATTCAAT

                                    
    1111776 CAAATCACGATTACGTTGACGAAC
          1 CAAATCACGATTACGTTGACGAAC

                                    
    1111800 CAAATCACGATTACGTTGACGAAC
          1 CAAATCACGATTACGTTGACGAAC

    1111824 TTCTTCGGCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.38, C:0.25, G:0.17, T:0.21


Consensus pattern (24 bp):   
CAAATCACGATTACGTTGACGAAC

Left flanking sequence: Indices 1111276 -- 1111775
TTACATCTTAGACAGCCTCACTTTCACTCCTAGAATACTATATTCGAATAGAAGACAGATGGAAT
GCTTGCTATCAGTGCATTATATGTCCTAGTTGTCCAGTACCAATCCGCTTCCTGGAACTGCCAAA
GCAAAGAAAGCAGGTGGTTGACCCAGCTCTATCCGTAGCGTAGTTAACAGCCTAGGGAAAGGTCA
ATGATTTGCCCATCTTCTATCGAAGAAAAACATACCACCATTACAGAAGATCGATGTGCCAGCCC
ATGGCTATGCTCGTTGCCCACAACACAGGAGAAAGAGCAGATGAAGCATAGATTGTTTGCTCAGA
AAAAATGCATCAATCAAAGACCGAAATCACTTATTGTAATGTAAAATCACTTATTGTAATGTAAT
GGCGTAGTGGGATGAACAAGAAGGTCCCATGCTCGCCACAGCGTATGGTTCGATTAATTACATCA
TCGAAGACATCAAGCTACTCAATCACGTAACCCATGGCATTCAAT


Right flanking sequence: Indices 1111824 -- 1112323
TTCTTCGGCTTTGAAGCAGGTTATACAGCTTTCCCCTTCTATTGGTAGTGTAAATGCAGATTAGG
AGAGGAGTTAGTTCAATAGCTTCAGCATTTCACTCAAGTGCTGTTCAATCTAGACCTTTTAGGTA
AGTAGTTGATTTGGAGTACAAGCTTGTCGCTCTCAAGCGGGTTAACGGGATTTCTGCCTTTTCCG
GTTGTTGTAGATGGATCTTCGTAAAAAGTTCACTTGTCCAAGGAAAGGTTGTAGCTCTTTCTTGT
AGGTGGGCGGTTTAGCCTGTAAGATGGCATTCATTGCTCTTTGATAGGTTGCACCGGCATTTTTA
AGTCCAAAGGGCATAACTACCCATTCGAACGTGCCAATTGCACCTGGGCAGCGAAAAGCTGTCTT
CGGAACATCCTCCTCTGCTATGTATGTGGATCTGATTGTAGCCGCTGTGCCCATCCATGAAGGAT
AAAACTCGATGTTGGGCGGCTCCATCTACCAATAAATCTGCAATA



Found at i:1115837 original size:22 final size:22

Alignment explanation


    Indices: 1115812--1115858  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

    1115802 ACAATTTTAA

                                  
    1115812 TCTCATAGACTCTTTCTACTTT
          1 TCTCATAGACTCTTTCTACTTT

                                  
    1115834 TCTCATAGACTCTTTCTACTTT
          1 TCTCATAGACTCTTTCTACTTT

               
    1115856 TCT
          1 TCT

    1115859 TCTACTGCCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.17, C:0.28, G:0.04, T:0.51


Consensus pattern (22 bp):   
TCTCATAGACTCTTTCTACTTT

Left flanking sequence: Indices 1115312 -- 1115811
TAGCTTTCCTTTATAAGAATTTCCCACACAATCTGTCTTTCCCCATAGTTAGGAGCTCCATAGAT
CCAACAAACCCTATTAGAGTTTCCATTGTCCATATCAGTGATTGTTGTGTCAATGATGTTTTTTG
AGCTATACCAAACCTTCACTAGAGACTATCACTGCCTTTTGTCCTCCTTTTGCCCCTTCTGATGT
GATAGGAACATCAACCAAGTTGTTTTCAGCAAACACCAGCTGCTTCAAACTGTCCTTCTTCTTCT
TTAGTTTGCCAATTGGTCCTCTCCTTGTCTGGACTATTTTCTTACCCATTCCAATCTTATTCACC
ATATCCTTTCTAATTGCACTACTTTGATCCGAGTTCTCTATGTTTTCATTCATGTCATACCACTC
AAGTTTGTTACTCTTTTCATTCCTAAACTCTTCTTCCTCTCTATCAAACAAATCAATTTTCCTTT
TGAGGTTAAGATCCCTGAATTCATCAGCAAGATTGACAATTTTAA


Right flanking sequence: Indices 1115859 -- 1116358
TCTACTGCCTACTTTCATAATTCCACCTTCATCATCTGAAGGAAATTCAACAATATATGGGCTTC
CTTTCACATTGTCATCCCTATTCTGTTGGATTTATAGTTCTACACTTCTATTAGAAGCTTCAACC
AAGTAACTACCAGAACTAGTTAAACTAGTAGGATCAAAGATGGGAAGATTACCATGGTTGGGAGA
AAGAAAGTTCTATGGCTCCTTTATTTGTTCTTGCTCAATGCTGTGCACTGTCCTAGCTCTTCCTT
CCTTCCAAAAAACCCCTTCTTCTGCTACTCCTTCCTTCATTGTTGATGCTGGACCTTGAAAGTAC
TTACTCCCCACAGGCTCTGGCAAGACCTCAGACTGTTTTGAACTCCCTGGATTAGCTTCACAAGC
CTCATCGTCTATGTTTGACTGTGCCAAAATATGAGGGAAAGAGCCCCTTACTACAACTGCTCGAG
AACTCATCTAAAATGATTCCTTCCCTAAGAATCCTCCCCCTCTTC



Found at i:1119407 original size:14 final size:14

Alignment explanation


    Indices: 1119388--1119415  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

    1119378 GACCGGCTCT

                          
    1119388 CTAGTTCTGTCATG
          1 CTAGTTCTGTCATG

                          
    1119402 CTAGTTCTGTCATG
          1 CTAGTTCTGTCATG

    1119416 GAAGGCGCTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43


Consensus pattern (14 bp):   
CTAGTTCTGTCATG

Left flanking sequence: Indices 1118888 -- 1119387
AGATTTGATCCCATAGGAACAGAACCTTCTACCCCCTTTGGTAATCAATTCACTAGCTTCGACCC
CTGTCTCTCCCGATTCCTATACTACTGGCGAAGAGGGGTAAAGTTGAACACTTCGTTCGAAGATT
GATTTCGTGATAAGATTGAGTGAGCGAGATGACCGATTGACAATGAGAACTTTCATTCATCTTAG
GGATCCAGCTGCACTCGAGAGATTGGCATGCTTTGCTCGAGTCTCGGGTCTGGTATAGAGTCCTG
TCTTCATTGCTTGTTCCCTTCTGAGAAAGCGTCAATGACTTCTCGTCTCTAGCGGACATGGTATA
AAGGGGGGCTCACTTCTTCTCTCATGCTTCTGATGGATCTAGCAAAGACGCATCCACCTCTTATA
GACATCTGGTCACTCATTCGTATTGAGATTCATCCAAGTCTACCGTAACGGCTGCTAATCCCTAC
CTATTTCACTTTGACTCTTTTCAGGGCGGGAAAAAGACCGGCTCT


Right flanking sequence: Indices 1119416 -- 1119915
GAAGGCGCTGACCGATGTCGATTAGGAAGCTGCTCCTGTTGTAAAAGAAGTGAGGCAGCGAAGAA
GAAGCATTTTAGCATAAACCTGTCCGTCCTTCTTTATGGAATGCTCAAGCCTAGTGAGAACTCAA
GTCGATTTGAATGACTTCGGTACCTTGCAGAACGACCCCTAAACATAAAAATGACGACTTCTGTC
TGAAAAGCGTTCGAGAAGTCAGTGGACGGTCTAAATTAATGGGCGAATATTATAGGTTTTTACGC
AGCTGTACTCTAACTCTAAGCGCCCGCCTTTGAGAACAAAAAGTAGGATGAATTTCTTGCTTACT
TCCGTTTCGACGTCATCCGATCTTGTTTAGCAATTTGAAAAACTGAAGGACGGGTCAAGGCTCGT
TGAGACCTAGCCTACGATCGATTTCCTACCTTCGACGTAATCTTTACCCCGCTAAGCATACTACT
CCCGGGCAAGGTCATAAGAACCTTTGTGAATCCATCCCACGAAAA



Found at i:1120189 original size:19 final size:19

Alignment explanation


    Indices: 1120167--1120206  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

    1120157 TCCCTCGCCG

                               
    1120167 ATAACTTAATTGGCTTATC
          1 ATAACTTAATTGGCTTATC

                               
    1120186 ATAACTTAATTGGCTTATC
          1 ATAACTTAATTGGCTTATC

              
    1120205 AT
          1 AT

    1120207 CCGTAGTCAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42


Consensus pattern (19 bp):   
ATAACTTAATTGGCTTATC

Left flanking sequence: Indices 1119667 -- 1120166
TTTTTACGCAGCTGTACTCTAACTCTAAGCGCCCGCCTTTGAGAACAAAAAGTAGGATGAATTTC
TTGCTTACTTCCGTTTCGACGTCATCCGATCTTGTTTAGCAATTTGAAAAACTGAAGGACGGGTC
AAGGCTCGTTGAGACCTAGCCTACGATCGATTTCCTACCTTCGACGTAATCTTTACCCCGCTAAG
CATACTACTCCCGGGCAAGGTCATAAGAACCTTTGTGAATCCATCCCACGAAAAATACGCCTCTA
TGATCCACGCCAAACACACGAGTTGAATGCTCTCTTTTATTTATTTAACCATGCCGCATATCCTT
ATAAGCTCAGCTTGGCCCCGGTCCCCCTTTCCAAGGCTCTCCCGTTTAATTAGTGCCGCTACCTC
CTCCGAGCGATCATCTCTCGTCGTCCTTTCGGCTCGCATCTTTTCTTCTTTCATCGCGAGTGGTA
GTACTCCTTCAGGAGTTGGCCTTGGCTGCACTTGTTCCCTCGCCG


Right flanking sequence: Indices 1120207 -- 1120706
CCGTAGTCAAGCTCGGTTTGAACGATCAAATAGGGTCTTTTCCTCGATAGGCTTCCTTAGCATCC
AACAATTTCAGCCTACGGAGTGGTGAATTATACTAAAAAAGAGGAGAAGACTTTCCCCTAATAAT
AGGCAGAGCGAACCAAGAAAGCGAACAGGGGCCTACAAAAATGTTGTTCCGACTACAGGAAAGAA
GGAGCAGGAATGGGAGTGAGATAGCTATCCGATAGAAATGCTAGACTTAGAGTGAGAGGGGGGGG
TTGCAGTACTGAGTTCATGGTTGAACAGACTGACTGCCAGGCTCGCATTCCCCTGGCTATCAACT
TAACCTTGACCGAGTCCGCCATACCATACTATCCATACAGGGCAGGTCGTATTTCACTTTTTTTA
TATATATATAAAGGAAAAGGCAAAAAATTAAACTATATGGCCCTTTTCCATACTAGGCCCATGGC
ATCAGCGGTGAGTGCTGAGGTGATCCCCGTAGTCGGATTGTTGAA



Found at i:1122263 original size:32 final size:32

Alignment explanation


    Indices: 1122227--1122290  Score: 128
    Period size: 32  Copynumber: 2.0  Consensus size: 32

    1122217 CTGGAGTGCC

                                            
    1122227 AGTGAGCCGGATTTCATCGGCAATCTCTTTCA
          1 AGTGAGCCGGATTTCATCGGCAATCTCTTTCA

                                            
    1122259 AGTGAGCCGGATTTCATCGGCAATCTCTTTCA
          1 AGTGAGCCGGATTTCATCGGCAATCTCTTTCA

    1122291 TCTGCTGCAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31


Consensus pattern (32 bp):   
AGTGAGCCGGATTTCATCGGCAATCTCTTTCA

Left flanking sequence: Indices 1121727 -- 1122226
GCGTAATCCCCTTGGCTCCACTCGCGCTAGAGAGAATGGCACACGAACGGGAATAGGCAGTGGAA
GGGTGTCGTGTAGAAAGATCTAGGAGTATTCCAATTAGGTTTTTCTTGTTGAGTCAATAGCTTCA
GAGGAAATTGATTCATAGTCGGCCTAATAGTAAGTCGAAGAAGCGAACGTTCAGAAAGAGCAGAC
ACAATCGGGTTTCACAGATCGAGATTCCTATTTAAATTCTTGAATTTCATTTCCTCAATCACGAA
CTCGCGAGAAAGCAGAGTTAGTCGAAACACGTCTATTGAAATTAACAGTGGGAATGCTTACATCC
ATAGGAAATCTTTCCTGCTTGAGATACAGTTCATGCGCCGTAGAGTAAATCATTCAGTTGCTCAA
AGGAAACTTGGGGTCTCCCTCACACGAATGGCAGCAACTATCTCGCGGAACTCAGATCCAACACC
TTTGAGGACATGGAGCACAAGATCATCATCATCTACTGGAGTGCC


Right flanking sequence: Indices 1122291 -- 1122790
TCTGCTGCATAAACTCGCCAACAGGTTTATTATACTGCCGCGTAGAGGACAATTTCTCTTTAAGA
GCTATCACTCTAGACCGATTGTGATTGGCGGCTTTCAAACTAGCCATTGTACCTGAGATTGCTTT
CAGTCCTCTTCTCTACCCAAATGCACATGTTAAAAATACCCCAAAGACAAGGTCTGACCATTTCC
CTCTTCTACTTGATCTTCAGGGTTAATCCCCACCTCGATCGTCTACTATGGAATGAGAAGGCCAT
GCTCTTGTTCACTGAGTCGCAAGTTCTGAACCTACCTCGCATCTGCTCCGACCACCATACTATCG
CCTTCAACTCCGACTTAACGACTCCGCCTTGTCGTGATTCTCGTCCTTTCCCTTTCGAAGCAGCC
TGGTTAACTCACCTGGATTTTCCTACAGTTTTCAAGAATGCTTGGGAGCAAGAAGAGGAAGTTCC
CTTGGCAGGCGAAGTGGCTGACATTGTAGAATGCTTTCCGCTGAA



Found at i:1123843 original size:24 final size:24

Alignment explanation


    Indices: 1123811--1123857  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1123801 GAGAAAAGAA

                                    
    1123811 CTTCTAGTTCGCCTATTTGTGAAT
          1 CTTCTAGTTCGCCTATTTGTGAAT

                                   
    1123835 CTTCTAGTTCGCCTATTTGTGAA
          1 CTTCTAGTTCGCCTATTTGTGAA

    1123858 CCTGAATTCG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45


Consensus pattern (24 bp):   
CTTCTAGTTCGCCTATTTGTGAAT

Left flanking sequence: Indices 1123311 -- 1123810
ATGATTCCCAATTCTTTTTAAACCTATGGGACTAGTTGATAATCTCCTCATTTGCTAACCATTCA
GAAGAAGATAAGATAGACCCAAAAGCAAAAGAGTAAGCAGGCTCTGCAATACCTTATCGATATGC
CTCATGGGTATACATATCTTCCACAATCCCAAAAGAAATAGGCAGACTCAAAGCCTTACGTTAAG
CGGAAATAATCACCTATTCCCCTCTTCACCTCCAATCATTGGTTATAGAACATGGAAATGTGTGA
CTTCTGACTCGGATTCATGCCCTGACTAAGTAATTTCCCATAAGATTTACGCCGGGGAATAAGGG
CAGCTAGTGAGCTGTGGTAATAAGGATTGTTGTCGGAATCAAGGCAGTGCTTTCTTTCGAGATAA
TCTTCTCTTTTCTTCTATTCTTTGTAGTGCGGTAAACTCTAAAGGTAAGTTCAAGATTGCTTTTC
GTCTGAATATGAAGCTTCCCAGCTCTTGAAAAGAAGAGAAAAGAA


Right flanking sequence: Indices 1123858 -- 1124357
CCTGAATTCGCCTAACGGATTTTGTGTTTTAAATCCTGTTCGCCCTACGTTGCCCCTTCCATTTT
GCTTTTAAGTTCAGCTACATTTGGGCAAGAAACCCGTCGGCTCAACTCGTCATCCTCCTCGCTTA
TCTCCTTCGTCTACTTCGACTAAAGGCTCCGTTCTAAATCGCCTGTTCGCGACTATTGAAGACCT
ACTTCTTAGCTACGCGGTCTAAAAAGAGTTCACTTGACAGTTCGACCCAAGGCTACTCAAAGAGA
GCAAGCACACAACATCGCGGTTAACTCACCAGCAGTCCCTACTTAAATCGTTTAAGAAAGGCAGA
GTACTTTTTTAGATGTCGAAGAGCCGAAAGAGGGGATCAGTGTCATTTAGAAAGCCAAAATACAA
AACTCAATCCATTCGCTTTTTTTAAGATAATGGTGCACCCAATCAGCCAGCCAGGCATCTCACTA
CGGTACCCATTCCCCGTACGTGCTCTTTTCTGTCGTCTGTGGTGA



Found at i:1123870 original size:22 final size:23

Alignment explanation


    Indices: 1123813--1123871  Score: 68
    Period size: 24  Copynumber: 2.6  Consensus size: 23

    1123803 GAAAAGAACT

                *                  
    1123813 TCTAGTTCGCCTATTTGTGAATC
          1 TCTAATTCGCCTATTTGTGAATC

                 *                  
    1123836 TTCTAGTTCGCCTATTTGTGAA-C
          1 -TCTAATTCGCCTATTTGTGAATC

                          
    1123859 -CTGAATTCGCCTA
          1 TCT-AATTCGCCTA

    1123872 ACGGATTTTG


Statistics
Matches: 33,  Mismatches: 1, Indels: 4
        0.87            0.03        0.11

Matches are distributed among these distances:
  21    2  0.06
  22    9  0.27
  23    1  0.03
  24   21  0.64

ACGTcount: A:0.19, C:0.24, G:0.17, T:0.41


Consensus pattern (23 bp):   
TCTAATTCGCCTATTTGTGAATC

Left flanking sequence: Indices 1123313 -- 1123812
GATTCCCAATTCTTTTTAAACCTATGGGACTAGTTGATAATCTCCTCATTTGCTAACCATTCAGA
AGAAGATAAGATAGACCCAAAAGCAAAAGAGTAAGCAGGCTCTGCAATACCTTATCGATATGCCT
CATGGGTATACATATCTTCCACAATCCCAAAAGAAATAGGCAGACTCAAAGCCTTACGTTAAGCG
GAAATAATCACCTATTCCCCTCTTCACCTCCAATCATTGGTTATAGAACATGGAAATGTGTGACT
TCTGACTCGGATTCATGCCCTGACTAAGTAATTTCCCATAAGATTTACGCCGGGGAATAAGGGCA
GCTAGTGAGCTGTGGTAATAAGGATTGTTGTCGGAATCAAGGCAGTGCTTTCTTTCGAGATAATC
TTCTCTTTTCTTCTATTCTTTGTAGTGCGGTAAACTCTAAAGGTAAGTTCAAGATTGCTTTTCGT
CTGAATATGAAGCTTCCCAGCTCTTGAAAAGAAGAGAAAAGAACT


Right flanking sequence: Indices 1123872 -- 1124371
ACGGATTTTGTGTTTTAAATCCTGTTCGCCCTACGTTGCCCCTTCCATTTTGCTTTTAAGTTCAG
CTACATTTGGGCAAGAAACCCGTCGGCTCAACTCGTCATCCTCCTCGCTTATCTCCTTCGTCTAC
TTCGACTAAAGGCTCCGTTCTAAATCGCCTGTTCGCGACTATTGAAGACCTACTTCTTAGCTACG
CGGTCTAAAAAGAGTTCACTTGACAGTTCGACCCAAGGCTACTCAAAGAGAGCAAGCACACAACA
TCGCGGTTAACTCACCAGCAGTCCCTACTTAAATCGTTTAAGAAAGGCAGAGTACTTTTTTAGAT
GTCGAAGAGCCGAAAGAGGGGATCAGTGTCATTTAGAAAGCCAAAATACAAAACTCAATCCATTC
GCTTTTTTTAAGATAATGGTGCACCCAATCAGCCAGCCAGGCATCTCACTACGGTACCCATTCCC
CGTACGTGCTCTTTTCTGTCGTCTGTGGTGATAGATCATTCGCCC



Found at i:1125338 original size:32 final size:32

Alignment explanation


    Indices: 1125302--1125366  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

    1125292 TATAAACCCA

                                            
    1125302 GCTAAGATGAAAAGGTTTAGTTAACCGCTTAT
          1 GCTAAGATGAAAAGGTTTAGTTAACCGCTTAT

                                            
    1125334 GCTAAGATGAAAAGGTTTAGTTAACCGCTTAT
          1 GCTAAGATGAAAAGGTTTAGTTAACCGCTTAT

             
    1125366 G
          1 G

    1125367 TGGGGGCTTC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31


Consensus pattern (32 bp):   
GCTAAGATGAAAAGGTTTAGTTAACCGCTTAT

Left flanking sequence: Indices 1124802 -- 1125301
CTTTTTCTACGTTCTGGGTTCGACTATCCATAATTTCTCTTATCTTTCTTTTTCTTCTATATTAC
AGAGGAAAGCCCGTCTTCTTTATATCTGATCTTTCCTGGGATTCTAATTCCAGTAGCAAGCTAGA
CACCGGAAACCAAGCTTGCCTGTCCAGTGAAGAAGGATTTTCTATAGTAAAAAGGCTATCTAGTT
CGACATCTCTTGTCTTAAACCTACTGCTTTCAATTACTCTACCTTCTTTCGACTCGGGAGTTCCC
CTCTCTTAGCGCCAATAAAAAAGGTATAGTTGCAGTCAAACTCAAGTGCTGCTCACCGGGAATGG
AAGATAATCAGCCTTGGATGGAGAACCTGACAGCCTAACAGCTCCCCTCCCTATTTATTCCTCTT
TTGGTGGTTGGATCGGGAGAGATGCGATCAACCGTACGTACTGGCCTCCTTCATCGCCTGAGACT
TTCTTTCTGGCTAGGGGGCAGAGTGGGAGTACTTTTATAAACCCA


Right flanking sequence: Indices 1125367 -- 1125866
TGGGGGCTTCTCGTTCGCATATGAGCTAAAGGTCGGTAGGGGCGAAGATGCTAACATTCACACTA
AAATGTTAAGAGTCGCACTTGAAAGCGATTCTTGATGTTACGGCTGAACTGAAGCCAAATACGAA
TACAGAGCTAGGAAAGCAAGACTCCTCAGAGGTTTTTTTTTCAATGAAGGGGAAGAATATATGAC
AGTTGATGCTGCTAAAGACTTCGGCCGTGCCTTTCCTTTTCTTGTTATCCTTTCCGACCTCATCC
CTTCCACGGATAAGGGGCACTCCCAGTCTAGCAAGCGCTAAGGTAGAGAGGTAGGGTTAAGCCAC
TAGTGTCTGAGATTAAGTCAATTAAGTGAAGTCCGCTGTAATTCTTTCTTAGATAAGATATAGAT
TGTTGGGACTTTCATCCACGACTGGAACTCCGCCATATTTGATTAGTAAAATCGCTTTTAGGCCT
TTTCTTGCACGCAAAGAATTAGATTCAGTCTGGTCCCTCGGTCAA



Found at i:1131071 original size:17 final size:17

Alignment explanation


    Indices: 1131049--1131082  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

    1131039 TCATCACACT

                             
    1131049 ATGGTGTAAAAGTAAAA
          1 ATGGTGTAAAAGTAAAA

                             
    1131066 ATGGTGTAAAAGTAAAA
          1 ATGGTGTAAAAGTAAAA

    1131083 GGCTACGTCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.53, C:0.00, G:0.24, T:0.24


Consensus pattern (17 bp):   
ATGGTGTAAAAGTAAAA

Left flanking sequence: Indices 1130549 -- 1131048
CGCTTTTTAAGCCAGTTCGCCGCTACGCAAGAGAACTCTTTAAAGCTTTTCGATACACCTTCTAC
TTTCATATATAACATCCAAAACCGGGAATGAGACTTCCAGTGGCCATCCTTCTCCTCCGTGCTGT
TCGACCGCTTTCTTCTTCATCTAGTATCTCATCACTTATCAGATGGCTTTAACAGGCTTTCTACT
AAAGAAACTACGATTCATCAGGGCATTCAAATCTGAGATTCATTAAAATTTCGTATAAAACGGCC
CGAAGGGACGGGAAATCATAATTACGTCTAAAGCGTGTAGAGATCTCTAACCGTGCAATCGTGTC
ATGAGCTTATTATCATATAGAAGCATTGAAATCTTTCGATGTAAGAGAGGAGTTACATCGTACGC
CGCTTCGAATAGTTATGCAATGAGCTTTTAGTCCCGCCTTAGAATGTAAACCAGACCCTCCTATG
ATAACATAGATAGAAGAGAGAAGTCGTTTTTTCATTCATCACACT


Right flanking sequence: Indices 1131083 -- 1131582
GGCTACGTCTTCCTTCTCCTTTCTGTTGACGTTGGCTCACGTTGCCACACAATTTAACGACAGCG
AAACTATCTCCTGGCGGTTTACTATAGCTCCAATCCCGCCTGGAATGACTTGCTTAGCTAGTTTC
CTTTTCCGCAAGATGTCTTGTATTCGAACTATCTCTCTGTCCGGACGATAAGTCTAATTAGCCAC
CCACAAAAATGCATCGGGCTGGCCAGAGGCATAGCAGAGGCTCCTAAAATCACACGAAAGAGCAC
CCGAAACTGGGGAACGCGGCACGAACTACTCTTACTTATTCTAATCTCATTGTCTTTCGGGACTA
GGGGAAATAGGTAATCGACTCCTTTTCATACAAAAATAACCGGGCTTACTCTAACGCTATACGGA
ATATAAGACAAAAAGGCAAAGCCAATTTACACGAAAGCTTGTAAAGCAGGAAAGCATTCCACCTT
ACAACAATACTCGCCCAGGAAAGAAAGCAAACACACGAAAGAAAG



Found at i:1134909 original size:20 final size:20

Alignment explanation


    Indices: 1134884--1134923  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

    1134874 CACTGACCAT

                                
    1134884 AGTAAACTCTCCCAACAATC
          1 AGTAAACTCTCCCAACAATC

                                
    1134904 AGTAAACTCTCCCAACAATC
          1 AGTAAACTCTCCCAACAATC

    1134924 GGAAATAGTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.35, G:0.05, T:0.20


Consensus pattern (20 bp):   
AGTAAACTCTCCCAACAATC

Left flanking sequence: Indices 1134384 -- 1134883
GACAGCCGACTTTGGTTTGTGCCCGCTACTCGTCAAGGGAGAAATGATGGGCTCTTAGTGACCCC
TGAGGTTCGATGCGCTGGAATCTCCGAAGCGAGCGAAGAGCCGATTGGCGAGGGTCCGTGGGTCT
TTATACGTCCCCGTGACAGGGAACGAAAAGAGGAGAACAAGCTGATTAAAACTCCCTTTCCATTA
TTATTCCCTCAACAAAGTCAAACGACTCAAATAGATACTCCCACCGTCTTACCGCGGCTGCTGGC
ACGGAGTTAGCCGGTCGAAGTAGGGGACGATGGGTCCAAGACCCGTCTTATAAAAGAGAAAAGGG
GAACTCCTTCCAAGACCAGTATGTGCGAGCATTCCATAAGCACCTCCTCTCAAAGGTTTTCATAA
AAAAGGCAAGCCTGACGACAGAGGGAAATTGCTACTTCCATGCTTTCGCCTGGCAACCACGAGCA
TATCTGATACAGTTTTTTTTCTTTATAACAAATCCCACTGACCAT


Right flanking sequence: Indices 1134924 -- 1135423
GGAAATAGTATCAGCGTCGAAACCCTAGGAGTATCAGCGTTCAAGCAAACTCCGGCTCGATTCGC
ACGATCACCAGAGTCAATATTCATATTCAAATCAACCATTTGCCTTTCAGGCACCACCGTAAATG
ATTGAGTGTTGGGGGGGTCACGAGTCCTTTGATCAGAAGACAATGAGGAAAATGTTTGCTGGTTA
ACAGCTTTCATTACCCCCACCGCCTCAGCCTCTTTTAATGAATCCCCATCGATGACCATCAAATT
ACTATCCGTATCCACCACTGTCAAAGACTTCTCTCTCGTAACCTACTTATTCTTTTCACTAGTTT
TGTTCAAATATGCTGGAATAGCACTCACCTCATTATGACCAGAATCTTTAGGCGCACTAACTCTA
CTATTGTTACGCTCTTGTTGGGGCCTTCCCATACTGCCATGCACTTTAAACCTAGAAGCACTCCC
ACTAAATAAAGGTCTAGATTCTTTAGCAAGATCAAGATTTGGCGT



Found at i:1140341 original size:26 final size:22

Alignment explanation


    Indices: 1140315--1140358  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1140305 GGGCTACTAA

                                  
    1140315 ATAAATAGGGTAAGGGTCCTCT
          1 ATAAATAGGGTAAGGGTCCTCT

                                  
    1140337 ATAAATAGGGTAAGGGTCCTCT
          1 ATAAATAGGGTAAGGGTCCTCT

    1140359 TCAAGACGGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27


Consensus pattern (22 bp):   
ATAAATAGGGTAAGGGTCCTCT

Left flanking sequence: Indices 1139815 -- 1140314
ATTCACGCGATATGCGCTTTGTCCTCTTTATCTGCGCACTTCTTGGCATTGTTATCTGGTGGCAT
ATAGCGCCTACGCAATTGTTTCAACATCCCGCTTCATTATGCTCACCCTACTTATCTACTCTTGT
CAGGATTTGCAAGGATACCTTCGTTGCGCATGTATGCAGTATTCATCCCGATGTCGCTAGCCCTT
TCTCCTGTGGTGAGCCACTAAATGTTGTGGCTAGACAACTTATTCCCGATAGTGCATCTAGTCCC
GTTAGTGAGCCTAGTTTTGATCCCCTCTCCATAAGGAGCAGGACTAAGTCGGCTTGCCTAATTAT
AGGTTTTCTAGTGGTAACGGTTATGCTTTCCGAGTCGGTTTCGCCACACGGGTTTTATGTGGGTG
GATTGCTCATTCGGCTGTGGCGCACGGCGCGTAGGTTTCACCTTTGTCTTCCTGCTCGTGACATG
CATTGATGTCCTTTCGTCGCTACGCTTAGAAGTGAGGGCTACTAA


Right flanking sequence: Indices 1140359 -- 1140858
TCAAGACGGATAGGAAGAATAGAATAAATTACATAAAGAAATCATCTATTATCGTTTCACCTGCC
CTGCATTCTAGCTTTTCAGCTCGGTTAGGTTCTTCTAAACTTCGCTACCTAAAATCCCGGTTCAA
CCAATCAATCTCTGATCTTGCTGCTTTCGTTTTTGAGAGGGGCTTGAGAGAAGGTTAGGAAGTTA
GTTCTTAGCTGCTGGACTTTATTAGTTAACCGGTTATGCATGAAACCAACGAACGGAAATAAAGT
AAAGCCCTTATTTCTGAAAGAACCCCTTCGCTTTCTAAAGGATATGAAAGAGATGAGTAACCCTA
TGATGAATAGCTCCCCTTTTCTAATATTTTACCATGATGATCTTATTCAATTTATTATAGGTTTG
GGATGGGGCAATGTATCATACTTAAAAATGGTTTCAAAGCATTTTCATTGTTAAGGGCCACCATA
AGCCTGATGTCATGATCTCTCGTCAAACCAGCAATGGGGTCAAAT



Found at i:1146655 original size:11 final size:11

Alignment explanation


    Indices: 1146639--1146674  Score: 72
    Period size: 11  Copynumber: 3.3  Consensus size: 11

    1146629 CAGGGGAAGG

                       
    1146639 ACTGACGAACT
          1 ACTGACGAACT

                       
    1146650 ACTGACGAACT
          1 ACTGACGAACT

                       
    1146661 ACTGACGAACT
          1 ACTGACGAACT

               
    1146672 ACT
          1 ACT

    1146675 TACTTGTGCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   25  1.00

ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19


Consensus pattern (11 bp):   
ACTGACGAACT

Left flanking sequence: Indices 1146139 -- 1146638
ATGTCTACTGGAAATGGGTATTCTCCAACTGAAACCTTGGGAATGTCCCTCTCATCTGCATCCCT
TGCTTGCCCGGAATGAAGAAGGTGGACCGCCTCGTATGGATCACCGGATAGAGCGTACTAAGGGG
CTAGCCCCGTTAACTGCCCTTTCTTTTGCTCGATCGTGTTATAACTCTCTCATGCAAGTTGGGAG
AATATATCCCATAGGAAAGCCCCTTACTAAGAGCAATTTCAGACCATCGTAAGAGCACTGTGAGC
GGAAGTTACTTTGTGATCACGGCTTCGGACACTGCATTCATCAAGACAAGTCCATTGGCTTTTCG
AGGGATTTCTCGTTGCCCTTATCGAGAAGGTAAGCTACTCTATTACTTGATATGGATTATTAGAA
AGCATATATCGATTCTCAATCCTACTCCTTCTCGTTCAAGAGCCATATATACCCATCCCTCTCTT
CACTCTCGCGCTCTTGCTAACTCCTGCCTCCGGGTCAGGGGAAGG


Right flanking sequence: Indices 1146675 -- 1147174
TACTTGTGCTTGGTTAATTACTTTTCTGACTTGGGGTTCTTTCTCGTAAGTGGTACACCTACACC
CTGAACGCACACTCACTATATCTATATACGTATACGTTGATAGCCTTTCGAAAAAAGCCCCTCTC
TCTCTCTACTAAATACAGTTTTTTCAGGCCGCCCGGATCCAGCTGAAAAACGGAATGGAATACTC
TAAGATGCTTCATAGCTTCAACAAGTCCCAAACTTATTATTAGTAAGATAGGGTTCCAAACCTGC
GCTCCCGCGAAGAAAACTACAGGGCGGTTGTAAGATGGAAAAAGATTAGGTAAGAATCAAAACCA
GCATCAGCCGAACTAACATATAAAGTTTCTCCCGAAACAACGGATTCCTCACCCTCATGAGCCCG
AAGTAACTCATCCTCATCATAAAAAGAGTCAAAAATCCGAAATGCCTATCTCCAGCCGAATTCGT
TTCATAAGACTTATTGGAAGAAGCAATTGGATAAGAATTATAGGC



Found at i:1155991 original size:24 final size:24

Alignment explanation


    Indices: 1155959--1156008  Score: 91
    Period size: 24  Copynumber: 2.1  Consensus size: 24

    1155949 AGACAAAGCA

                        *           
    1155959 CCCACACCGAAGGGATTCTATCTT
          1 CCCACACCGAAGAGATTCTATCTT

                                    
    1155983 CCCACACCGAAGAGATTCTATCTT
          1 CCCACACCGAAGAGATTCTATCTT

              
    1156007 CC
          1 CC

    1156009 AGTACCTCCG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.26, C:0.36, G:0.14, T:0.24


Consensus pattern (24 bp):   
CCCACACCGAAGAGATTCTATCTT

Left flanking sequence: Indices 1155459 -- 1155958
AAAAGGGACCTCTAACCCAATCTTGACTTAATAAGAGAGGTCAGTTGACGTATTTTTTCAATCAG
CTGGTGGAACGCAAGACCGGGTTTCAATCTTACAAGAGAGAGAATAGCGAATGCTCACTTATGGT
ATTCAAAACCACTAAGGATACCCGGAGATGCTACGAAAGGGAAAAAGATCTGACAGACAGAAGCC
TTTTATTGGGATTCTTTTCATTGCACCTACTCCGTACCCTGCAATTGGCTATTTCCTTGATTCGA
GTCCTTATCTCAGGGTTTCAGCAGACAGCTTAGTCCGAGTATTCGTACCTGAGATCGTCCTTTCT
GGGGCTATCACCATCCCTATCTAAGTAGACTGATCTGGGAGTAAAGGTAACCCCATCAAATAAAG
AAAGAGCGCTGTCTGCTTTCCTTGGATGAGGAATGTCCACTTTGCTATCTCTCGAGAATGTGTTC
TGTGCGTGTATGTTCTAAATAGCACGCGAGAGAAAAGACAAAGCA


Right flanking sequence: Indices 1156009 -- 1156508
AGTACCTCCGCCAAAGCATCTCCACTTTCATGAACCAGCTCGGGAGTTGTTATTGATTTGCTTAC
TGCTTCAGATTCCGAATTAGCCTTTTCTAGCTAGCCAGTTGCATAAGCATTTTAAGTTTCACTCT
CTGGTTTAGCAAGGAGATTTCCCAGAGCAGCTGATTGGCTTTCATCCCCTTCTCTTACGTCTTTC
TAAAGGATTTAGCTTGAGAATCAATCAGTGAGGAAAACTTAAAGAAGCCCTATTGCAGCCCCAGA
TTTCCTACACTCAGGAAAAGAAGATCAGATTCAGCTGGGCGAGATCTCTATGTGCCCTATTGTAT
TGGTAAGACGGGGCAGTCTCCTCACTAATAAATGGAATAAAAAATCTAATAAGTTGCATCTCTAA
TAGCGGTTCAACCTTATTCACCTTCCGTTCTCAGGTAAACCTCTGAATCTTCATTTACTTATTTC
ATTCCCGAGTTAGCTTAGGAGGTTGGGATTAAGCACCATCCCCAA



Found at i:1158608 original size:9 final size:9

Alignment explanation


    Indices: 1158590--1158624  Score: 61
    Period size: 9  Copynumber: 3.9  Consensus size: 9

    1158580 GGGGACTTTC

                 *   
    1158590 CCATAGTCA
          1 CCATAATCA

                     
    1158599 CCATAATCA
          1 CCATAATCA

                     
    1158608 CCATAATCA
          1 CCATAATCA

                    
    1158617 CCATAATC
          1 CCATAATC

    1158625 GGTATGAATG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.40, C:0.34, G:0.03, T:0.23


Consensus pattern (9 bp):   
CCATAATCA

Left flanking sequence: Indices 1158090 -- 1158589
AATGGAACAGTGCGAGAAGGGCCATCAGAAGCCACTTCCTCTTGCAAAACCTCATCACTCCCATC
CTACATAACACGCTCTGGACTCGCCTCCGACCGTCTCTTCTTATATTTCTTCTTATATCGACGGA
GAGCTTCATCACTGAGATCGGTGACCGAAGGATTCCTCAGCGGACAATTCTCCATCTCATCAACG
ATTAATTGGATTTGAATCTCGTTCCATCTCTTATGGCATGTCAATGACACATCAGGGATATTAAA
TAAAATGAATGGAATTGGGAATAGGATCTAGGAAGAAACCTGACAAATCTACTTTTCGGATAATC
TGGAAAAAAGTAATCCACGTCGTTTGACTAAATAAAAGTTGGCACTGAATTCTTAAGAAGAGAGT
CGGAAGAAGATCTTCTCATAGATGGATTTTCAAAATGTCTTCATTGTGCATGCATGGCTTCCCAA
TTCTTCATCGATCTCGTACTAAACGAAACTAACGAGGGGACTTTC


Right flanking sequence: Indices 1158625 -- 1159124
GGTATGAATGCCTTTCCAAGGAATAAAGAGGAAAACCGCTACGACGCGAAGAAGGCCTCTGACTT
TGATCCTAACGTCCCCTTGGCCCTTTTGCCTGTGAAATGAACAAAGCAAGCTTTCCCTCACTCCT
TCTCCTTGAACAAGAGTTAACGGCTGACGGGTTTTTCTTTCAATGTCCACTCAGCTCGGGCATGA
AGCCTGCTAAATTCCTTGGCAAACAACTCTGCCAACTGAGCTGCTGTGAAAGAACCAGGTAGTGC
TAAGAAGTGCCCGTACTTAGACAAACGATTAACAATGACCATATGGTGGATTTCCCATGAGAGTT
TGGCAAGTGGGTAAGTCCATCGAGATATCTTGCCAGATGTTTTCAGGGATTGGAAGAGGTTCCAA
TAACCCGCCTGGCTTAGTAGTTGCTTTTTTAGCTTGCTGACAGACAATGCAAGCATTCACGAAGT
AAGTTACTGAGTCTCGCATCTTGGTCCAATAGAAGTTAGCTGCTA



Found at i:1160299 original size:19 final size:19

Alignment explanation


    Indices: 1160275--1160312  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

    1160265 CACGCTTTGA

                               
    1160275 CTTGCTTTAATGATTGGTC
          1 CTTGCTTTAATGATTGGTC

                               
    1160294 CTTGCTTTAATGATTGGTC
          1 CTTGCTTTAATGATTGGTC

    1160313 TCCGTAGAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.16, C:0.16, G:0.21, T:0.47


Consensus pattern (19 bp):   
CTTGCTTTAATGATTGGTC

Left flanking sequence: Indices 1159775 -- 1160274
TGACGCTTAGATGACAGGATATTACCTACAATTGAAATAGTAGCTGACCTTATCGTGGCAACGGA
TTCATCTTCTTACGCTCTTCCTAAATAAATTTCTGAGCTTGTAAGGTCCAGTGATGATGGGACTC
GTTGATGACTGATCTCATTTATCAGTGACTAAAGAACTGAAAGCCTAGTGACGCAACCACTTACG
AGCCTACCTATCCCGGATAAAAGGAGCTTAATCAAAGCAAGCTGGTGATTCAAGCGCAGAGCGCC
ATGCCTCCACTCGTGAACCTCTCCCCTCTATCGCTACCTATCTAAGTTAAGGCTTGAACCCGAGT
TGCAGAGAATCAAGATCTTCTATCTTTCTTTTGGCATCAATGTCATTACTTATTTCAGACTGGCC
TGAGAGTTTGGTCCCTGGTACTGTGCCTATTCACTCTCTTCCTAAGTCAGGCTATCGAGAAGGGA
TTGATTCTATTCACAGACAGCTTTCCCCCCTTATCCACGCTTTGA


Right flanking sequence: Indices 1160313 -- 1160812
TCCGTAGAACAGGTATTGCTTCAATGCCCTTGCTATCTGAAAAGGTAGAATAAGGTTAAGTAAGA
GCAATGCTTACCTTACTATACAATAGTATAGATTGGTCCATCGGACACTCGTTCCTTTACAAGCG
GCCTGATTCCGTTCATATAGTCTAAGCTCGTTCCCTCTTTTTCCAAGAATTCATGCACACTTTGC
AAAGTAGGTCCGCAATAGGGGCCTGTCCGTCAAATGACCCCGCCTACCCTCTCAAAATCTTATTC
ATTGCTATGCTACTCTGCTCTCCAACCAGTTCCTTCTGTTCTTGTGGAAAGTCAATCTTCCTTCT
GTCGGGGTGGTTTAGTATGAATGATATATAAGTATTGAATTCTTTATTATAGGAATTTACATCGT
TGGTTAAGCCATAAACCAAAGTCTGGGGCTTGACAAGGTCAACTTAAGGGCATGAAGATCTTATC
GAAGCGTAGCGCTGCGACGAAGTGTTAAAGCTGACATTGTAGAAT



Found at i:1163352 original size:22 final size:22

Alignment explanation


    Indices: 1163324--1163369  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

    1163314 TTACCACCCC

                                  
    1163324 ATAAGAAGCGGTTATTCATACT
          1 ATAAGAAGCGGTTATTCATACT

                                  
    1163346 ATAAGAAGCGGTTATTCATACT
          1 ATAAGAAGCGGTTATTCATACT

              
    1163368 AT
          1 AT

    1163370 CTATAGCATT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33


Consensus pattern (22 bp):   
ATAAGAAGCGGTTATTCATACT

Left flanking sequence: Indices 1162824 -- 1163323
TTCAAAGCCAGCTCCACTGGCAAGTCTAGAAAAATCTTTTCCATGTTCCATCCACTCTCCGTAGT
TACATAATTCCTCACCAATGTGCCAGAATTCTCTACAGCTAAGTAGGGATCCAAGGACTGAATTA
AGGGATCATCCAGAAGCCATGGGTCCTCCCAGAACTGTACATTCAAACCATTCCCAACCCGCCAT
TTAAGACCTGTAGATAGTAAGGAAAGAGCCCTAACCAAACCTTTCCATGTGTAAGACCAGGCTGT
AGAGCCATTCGGCCTATCCGCAATGTACATAAAAACATCATCACTGACTCTATACTTCGCCTTCA
ATAAACGGACCCATAGACTATCAGTCTCCGAAATGAATCTCCATGCTGTTTTTTTGAAGTAAAGC
CCGATTATGCAGCTCCATCCGACGCAGGCTCAAACCCCCCATAGACTTAGGAATACATACATCTT
TCCAAGCCACTAAATGGACTCCCCGTTTGTGTTCATTACCACCCC


Right flanking sequence: Indices 1163370 -- 1163869
CTATAGCATTTGTGACATTCTTTGGCATCAGCATTGTCATCATATGATAAGTAGGAATCGAGCTT
GTGACAGAGCCGACCAAAGTAGCTCTTCCGGCCAAAGTTAAAAGCTTCGACTTCCAGCTTGATAA
ACGTCCCTGCACTTTCTCAACAATCTCTTTGAAAGTAGCTTTCGTCACACGTTCATGTATGAGAG
GCACACCAAGGTACTTACCCAAATCATTAGTGCTAGGCATTTCTAACAAATAACTCATACGGCTA
GCACCACCATGAGCTTTGGTAGAAAGAAAAATCTTGGATTTATCAAAGCTTATTTTCGCCCCATA
GGCAGCACAAAATTCATCAAGCACCTCTCTAATTTTGTTTTCTTGTGCCTCACCCACACGGCTAA
ATAAGAAAAGATCATCAGCGAAAAAGAGATGATAAATACCAGGGCAGTTACGACCAGCTTTGATA
GGCTTTCACGCCCCACACCGGACCTCTCTATCAATTAAATGACAC



Found at i:1167188 original size:30 final size:29

Alignment explanation


    Indices: 1167152--1167210  Score: 100
    Period size: 30  Copynumber: 2.0  Consensus size: 29

    1167142 GACTTGTCTT

                                 *       
    1167152 CTGGCGGTGGGGAATGCAGCGTCGAGCTA
          1 CTGGCGGTGGGGAATGCAGCGGCGAGCTA

                                          
    1167181 NCTGGCGGTGGGGAATGCAGCGGCGAGCTA
          1 -CTGGCGGTGGGGAATGCAGCGGCGAGCTA

    1167211 TGCCAAAGAG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.17, C:0.20, G:0.46, T:0.15


Consensus pattern (29 bp):   
CTGGCGGTGGGGAATGCAGCGGCGAGCTA

Left flanking sequence: Indices 1166652 -- 1167151
CTAGCACCGATAGAGAATCTCAACTCATCATTCATCAAAGAGGAAGGCTTCGGCCTTAAAATCTT
ACTCTGCCCCTTCGACGCTTCTTCTTCCTGGATACGATAATGGGGAAGTCTTTACTTCGGTTACT
CAACCAGATTAATCGGACTCTTTCTTAAGAAGGGAAGGAAATGCGTATGGTGAGATCGAGTGGTG
AGCCTTCGGTGCATGGATAAAAGGTAAAGCAGCATTCTATTGTCTAGAATTTGAGTGATGCATCT
ATCTATACAAGAACGTAAAGCAAGTCGAATCAATAGGTCGAAATACAGCTTCTTATAAAGAGGAA
GTTAGGTTGATGAGTAGCCACTACTTACTACGTCCCCAAAGCCCTAGCCCATACCTGAACAGCGG
ATTCAGATCACTCATCTGACGAAAGCACTTTTACGAGAGAAAAAACTATTGCCACTCCCTCCTTC
GGTAGGCTTTCATTCGCTTTCAATCTGCAGATCATGACTTGTCTT


Right flanking sequence: Indices 1167211 -- 1167710
TGCCAAAGAGAAAACTCCAAAGTTCAGAGGGAAAGAGCCCAGATCGTATGAAAGATAAACTATTT
ATATCGTATGAAAGATAAGCTATTTATAACTAGCCCCAATAAGGCTCTGCAACAAGACCTATCCA
CCAATCATCTCTATCTTTTTTGCCTTGAGTGTCTGGTTAGGGGTGGTGCTTTCAAGCCAAGGAAG
TGAGATTTTAGTAAGGGGGAACGTGCTACCTCTACATAAAGGTACTTTTTCTTTCTTGGTGAATT
TTATATTGAATCAAGACGATTTCGAGGAAAGCCCCATAGGTAAGCCCATCCACCATAAAGGGCGG
ACTAAACTGCAAGACCTGCTGGCCTACATTGCGTGTAGTGGGAATTTACTTTAACTAGCTGTTCC
AAAGCGGCTATTGCTTAACTACCAAAATCTACAACAGCTCTAACAACAGAATCAATGTATCCTCC
TAGAGTAAGCACTTAATTCGTGATGTCCCTCGTAGCTAACATAGT



Found at i:1167287 original size:25 final size:25

Alignment explanation


    Indices: 1167253--1167303  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1167243 AAGAGCCCAG

                                     
    1167253 ATCGTATGAAAGATAAACTATTTAT
          1 ATCGTATGAAAGATAAACTATTTAT

                            *        
    1167278 ATCGTATGAAAGATAAGCTATTTAT
          1 ATCGTATGAAAGATAAACTATTTAT

             
    1167303 A
          1 A

    1167304 ACTAGCCCCA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35


Consensus pattern (25 bp):   
ATCGTATGAAAGATAAACTATTTAT

Left flanking sequence: Indices 1166753 -- 1167252
ATAATGGGGAAGTCTTTACTTCGGTTACTCAACCAGATTAATCGGACTCTTTCTTAAGAAGGGAA
GGAAATGCGTATGGTGAGATCGAGTGGTGAGCCTTCGGTGCATGGATAAAAGGTAAAGCAGCATT
CTATTGTCTAGAATTTGAGTGATGCATCTATCTATACAAGAACGTAAAGCAAGTCGAATCAATAG
GTCGAAATACAGCTTCTTATAAAGAGGAAGTTAGGTTGATGAGTAGCCACTACTTACTACGTCCC
CAAAGCCCTAGCCCATACCTGAACAGCGGATTCAGATCACTCATCTGACGAAAGCACTTTTACGA
GAGAAAAAACTATTGCCACTCCCTCCTTCGGTAGGCTTTCATTCGCTTTCAATCTGCAGATCATG
ACTTGTCTTCTGGCGGTGGGGAATGCAGCGTCGAGCTANCTGGCGGTGGGGAATGCAGCGGCGAG
CTATGCCAAAGAGAAAACTCCAAAGTTCAGAGGGAAAGAGCCCAG


Right flanking sequence: Indices 1167304 -- 1167803
ACTAGCCCCAATAAGGCTCTGCAACAAGACCTATCCACCAATCATCTCTATCTTTTTTGCCTTGA
GTGTCTGGTTAGGGGTGGTGCTTTCAAGCCAAGGAAGTGAGATTTTAGTAAGGGGGAACGTGCTA
CCTCTACATAAAGGTACTTTTTCTTTCTTGGTGAATTTTATATTGAATCAAGACGATTTCGAGGA
AAGCCCCATAGGTAAGCCCATCCACCATAAAGGGCGGACTAAACTGCAAGACCTGCTGGCCTACA
TTGCGTGTAGTGGGAATTTACTTTAACTAGCTGTTCCAAAGCGGCTATTGCTTAACTACCAAAAT
CTACAACAGCTCTAACAACAGAATCAATGTATCCTCCTAGAGTAAGCACTTAATTCGTGATGTCC
CTCGTAGCTAACATAGTATTCTCTTTTACTTGCAGAAGCAAGAGAAGACTGAATCCCTTAATCTG
CTTTCTACCTGTGGGGTTACTATCTTATATTGAAGGTCGAAGCTC



Found at i:1171288 original size:28 final size:28

Alignment explanation


    Indices: 1171255--1171310  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

    1171245 CCTACACAAT

                                        
    1171255 ATCTCTTAGTTAATAAGGAAGCCTTGAG
          1 ATCTCTTAGTTAATAAGGAAGCCTTGAG

                                        
    1171283 ATCTCTTAGTTAATAAGGAAGCCTTGAG
          1 ATCTCTTAGTTAATAAGGAAGCCTTGAG

    1171311 CAGGGCCTGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32


Consensus pattern (28 bp):   
ATCTCTTAGTTAATAAGGAAGCCTTGAG

Left flanking sequence: Indices 1170755 -- 1171254
TTACCCAGGGAAAACCAATTACAGCATTCCGGGATTAAGGGGTGTAAAGGCAGTTCGGGCATTCC
CCAAAGAATACAAAAAGTAACTCGCAATCAATACCCTTTGCTGGCTAGCTGGCATAGATAGCAGA
TGAAAAAGACAAAAGCCCTTCTTTACTATTGGGGAAAACTTAAGAGCACCTGCGATTAGGTAGAC
CATAAACTACGCATTACATTAAACCCCTTCTGCTTCTTCAGCTGCCCGGAAAGATAAGATAATAC
GCCCTTTTGATGCGAGATTCCGAGAATCGCCTCTGCCTTTTGTTGGTCTTGATGCTGGGGAATAC
CCCCATAGGCTTTAAGAAGAGGTTGCGGATTAGGGTTTCAGGGAAGAGATTGCTTTGAAGTCCGT
ATAGCATGACCAGCCTAGCCTTACATCTCATATTCAGATAGAGATTATCTAGTTTTATAGGCAAA
AGGCTAATCAGTTGCTTCTCGTGCTGGAATAAAAGCCTACACAAT


Right flanking sequence: Indices 1171311 -- 1171810
CAGGGCCTGCCTTCCAAAAAGGAATTAGGGTACCTCTAAACCTCAGGTCAGATGAGATCATGGGA
ATGAAGAGTGGAGCACAACTTCAAATAATGAGTCAATCATCCGTAGGTTGTTACAACTAGTCGCC
GACAGGCTTAGGGCGATAAGGTAAGGCTTTGAAGCTGCTAATGAGCTATGAGCTAATTCCCCTTT
TCTTTCTTTCTATACGATATTTATTGAAACTCATAAGAAATTCAAAAGAGAAATAGCTTAACGAT
AGGCTTTCGGTTCCGGTCTGAAAACAATCTCATCCTGCCTTTCTTGTAAAACCTGGGTAATCACC
CAACTCTGCAGATGAAAATATGCTTTAGACAAGGCTTTCCACCACCGACAATACAATAGGGGACA
CTGGTAAGAAAGCACCTTAGACGAATCAAAGTCAGTCGAAGTTCCCCGTTGCAGATGACGAAAAT
ATGCTTGCTTCTAGATAGATAGCTCCTTAAACCGTCGGAATAAAG



Found at i:1174251 original size:13 final size:13

Alignment explanation


    Indices: 1174233--1174260  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

    1174223 GTTCGAATCC

                         
    1174233 TGTCACCTTGATG
          1 TGTCACCTTGATG

                         
    1174246 TGTCACCTTGATG
          1 TGTCACCTTGATG

              
    1174259 TG
          1 TG

    1174261 ATGGGGCTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.14, C:0.21, G:0.25, T:0.39


Consensus pattern (13 bp):   
TGTCACCTTGATG

Left flanking sequence: Indices 1173733 -- 1174232
AAGCCTGTAACTATGTTTGTTTAGGATTCTAAACTATTGAATTGGTTATGACTTTTCGCAGTTTT
AGAAATTTCATAAGAGAAGAAAGCCCTAACATAATTGGGTTTTTTCCCTTACTAGTTAAGTGGTA
AGGTAGGGCGCTATTCGATGAAGAAAACATACTTTAGGAAAGTGGTTCAGGTAGCTCAGCTGGTT
AGAGCAAAGGACTGAAAATCCTTGTGTCAGTGGTTCGAATCCACTTCTAAGCGGGCGAAGGGTCC
AAAGGACACGTAGCCGAGAGCGAGCCAGATTTTGAAATGAAAAAGTGAAAGAAGGCAGATTTTAG
AAAAAAAAGCGGTTGATTACTCGGATTGGTTCTCGCACCCCAACAAAGGATGGGCGAGTTCGCTT
TGAGTCTTCATCGATCGGGCGGATCTATATGCTTCGGAGGGTGAGACGAGGTGTAGCGCAGTCTG
GTCAGCGCATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCC


Right flanking sequence: Indices 1174261 -- 1174760
ATGGGGCTAAAGTGCACAGCTCCACGAAGCCTATGAAGGTAGGCGAACAAAAAAAAGCACTCACA
TATCATATCATCATGGAAAAAAACAAAAAACGACTGTCTAGTTATTTGGTAAAAATCAGCTTTGT
GGTCTTATTAATTCTTCCTTTACTCTTCTGCTATTGTTATGTCCTAGGCCTAGATGACCATATCC
TTTTTTTAAAAATAAAAGGGATGCTGCTGGGTAAATCTTTCCGATTCCTCGTTAGTCGGCTCGGT
TGGTGTGCCGGTGGTTTCTGTATCGCAATCACCGGTGCTTTCTGTATCGAAATCATTTATGGTCT
TTGTGATCCTATGGACATGATCGCAAAGCAAATGAACCCTTCGGGATCTTCGTATCGACCGCCTT
TGGATCTAAATATGCCTGCTCCTGAGTCGGAGGAGCCGGCCCCGGCATTGACCGATGCGCCGGAG
ACAGAACCGGCCTCAACCTCGAATCCGTCGCAGGAGGAGATGGAG



Found at i:1174562 original size:24 final size:24

Alignment explanation


    Indices: 1174528--1174575  Score: 78
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1174518 GGTTGGTGTG

                  *           *     
    1174528 CCGGTGGTTTCTGTATCGCAATCA
          1 CCGGTGCTTTCTGTATCGAAATCA

                                    
    1174552 CCGGTGCTTTCTGTATCGAAATCA
          1 CCGGTGCTTTCTGTATCGAAATCA

    1174576 TTTATGGTCT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33


Consensus pattern (24 bp):   
CCGGTGCTTTCTGTATCGAAATCA

Left flanking sequence: Indices 1174028 -- 1174527
AATGAAAAAGTGAAAGAAGGCAGATTTTAGAAAAAAAAGCGGTTGATTACTCGGATTGGTTCTCG
CACCCCAACAAAGGATGGGCGAGTTCGCTTTGAGTCTTCATCGATCGGGCGGATCTATATGCTTC
GGAGGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACAGAGGGCCATAG
GTTCGAATCCTGTCACCTTGATGTGTCACCTTGATGTGATGGGGCTAAAGTGCACAGCTCCACGA
AGCCTATGAAGGTAGGCGAACAAAAAAAAGCACTCACATATCATATCATCATGGAAAAAAACAAA
AAACGACTGTCTAGTTATTTGGTAAAAATCAGCTTTGTGGTCTTATTAATTCTTCCTTTACTCTT
CTGCTATTGTTATGTCCTAGGCCTAGATGACCATATCCTTTTTTTAAAAATAAAAGGGATGCTGC
TGGGTAAATCTTTCCGATTCCTCGTTAGTCGGCTCGGTTGGTGTG


Right flanking sequence: Indices 1174576 -- 1175075
TTTATGGTCTTTGTGATCCTATGGACATGATCGCAAAGCAAATGAACCCTTCGGGATCTTCGTAT
CGACCGCCTTTGGATCTAAATATGCCTGCTCCTGAGTCGGAGGAGCCGGCCCCGGCATTGACCGA
TGCGCCGGAGACAGAACCGGCCTCAACCTCGAATCCGTCGCAGGAGGAGATGGAGCTACAGCGTC
AGATGGAAGAACATGTTCATCGACGCTTAATGGCGACGTCTCCCCAGGGTAGCAATCCGGGCCTG
CTTCTACAGCAGGCACGGGAGACCGCGCGATTGAAACGAACGATTGCGGACCGGATGTCGAGATT
AGATCGGGATGCACCCGACTTTTGGCGGGACCATCGGTATGGGTTCGTTACCGAGGGTTTTCTAA
CCCAGAATAATCAGGTGGATCATTCTCCTGTATATCTCGAAAGGCTGCTAAACGAATTGGGTGGT
CAATCCGCCGATGCGACAGCAGGGTTAAATAGGATGCTCAAAATT



Found at i:1187062 original size:22 final size:22

Alignment explanation


    Indices: 1187037--1187080  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1187027 AGAAAGCAAA

                                  
    1187037 CTCAAAAGAAAAAGAATCTTTT
          1 CTCAAAAGAAAAAGAATCTTTT

                                  
    1187059 CTCAAAAGAAAAAGAATCTTTT
          1 CTCAAAAGAAAAAGAATCTTTT

    1187081 GTCTCGGGCG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27


Consensus pattern (22 bp):   
CTCAAAAGAAAAAGAATCTTTT

Left flanking sequence: Indices 1186537 -- 1187036
TTAACTCTAAACCCTTAAACAACTTTGGCTGTTGAATTGTCGTAGCCAATTTTCTAGTTGTTTTC
TTTCTTTGGATTAACCCGAGCCTATATGTAAGTAAGAGGCGTCGAAGATAGATCGCTATTGCTGA
CACGCGGGGCATATCAACATAAGAAGAAGACTAGGAATCGAAATCCAATACCTCATGCGGTGGAT
GACGGATATATGCTGTTTTTTCTCTTGCCTCAGAAGCAGTAGTTAGTGAGTTGCCTACCCTATCA
GGGTCAGGTTCCGGTTCAGGTATACCAACTTCGGAATGACCGTAGCCCAAACCAATAAATAATCC
CGCGCTCTTGAATCTCCTTGAGGTACCGGACAAAAAGGAATCGATTCTATCAACTTGCATTCCAT
AACCCTTGATTTAGCTCCATGGGCTGATAGAAAGATAAGGAATGGAATAAGATAGGATTTCTCAC
TCTTCCCCTTAAGGAAGGGAAGCTCTCTCAAACATAGAAAGCAAA


Right flanking sequence: Indices 1187081 -- 1187580
GTCTCGGGCGGGTACGGTAGGGAGTGTGCGATAGGTATTATTGATTGGACGGGATATCCCTAAGA
CGTTAAGGAGGCTTTTCGAGTGCAGCTAGAGCTAGGAAAGTTTCATTCACATGCCCTGCTTCCTT
AATGTTCTACAACTCGGAAACTAATTAGTTGCTTGAGAAGATGGGTTAACAAAGGGGAAATGGCC
CAGTAACAGTAACTGGATACTCGCACTGAGTAAATCCACTCATTCCCGAAGCAAGAGAAGACTCA
ATCGCTTAACCCGCTCTATAGCTCGAAAAGGAAAACCTAATCCCCATAACCAGATCCAGGCAGAT
CCCTTGACCTTTCTAGCACTCGAGATTCCATCTCTGAAAAACTGTCTTTCTTGTCTTTCCCTAGG
GATAAAAGAAGGTCTTAACGAGCCTTTTCCAATGTGTTGATTTGATATAGGAAAGCCTTATTCTG
ATTAGTCTGCTTATAAAGACTAGCTATGCTCTTTACAGTAGCGCC



Found at i:1187804 original size:24 final size:24

Alignment explanation


    Indices: 1187777--1187826  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

    1187767 TGGAAGCCTT

                                    
    1187777 TTCTTAATTGGTACCTTTCTTCAC
          1 TTCTTAATTGGTACCTTTCTTCAC

                                    
    1187801 TTCTTAATTGGTACCTTTCTTCAC
          1 TTCTTAATTGGTACCTTTCTTCAC

              
    1187825 TT
          1 TT

    1187827 TAGGATCTAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.16, C:0.24, G:0.08, T:0.52


Consensus pattern (24 bp):   
TTCTTAATTGGTACCTTTCTTCAC

Left flanking sequence: Indices 1187277 -- 1187776
AGTAACAGTAACTGGATACTCGCACTGAGTAAATCCACTCATTCCCGAAGCAAGAGAAGACTCAA
TCGCTTAACCCGCTCTATAGCTCGAAAAGGAAAACCTAATCCCCATAACCAGATCCAGGCAGATC
CCTTGACCTTTCTAGCACTCGAGATTCCATCTCTGAAAAACTGTCTTTCTTGTCTTTCCCTAGGG
ATAAAAGAAGGTCTTAACGAGCCTTTTCCAATGTGTTGATTTGATATAGGAAAGCCTTATTCTGA
TTAGTCTGCTTATAAAGACTAGCTATGCTCTTTACAGTAGCGCCTATATTTAGGTAGCAACTCTC
GAAAGGTTGCATAGTATGGCTGATTGAGTGCGCATTGATGGCTTAGCTGAAGTACCTTTATCTCT
CCGCTCATTTCCTGGCTAGCTGGTTCGGAACGTGGTGCATCGGATCATATTCGTGCAGTTCGCCT
GTAGCATCGGATTCTTTTCTTCTATTTCATTCATATGGAAGCCTT


Right flanking sequence: Indices 1187827 -- 1188326
TAGGATCTATTGTGTCTGGAGGTCCCGCTACTGATATGGGGTGGATTGTTAGAGTCTTTCGTCTA
AAGAGCCCGGAAAGGTGTGTGATTGGACATATCTCTTTTCTTCATTGATTTGGGAGCTTTAAAGC
CTATTCACGGCTTATAAAACCGCATAGACTCTCCATTACCTCAAATAAGACCAGAAAGGGCCACC
CATCTGTGGCTGAGCTGAGGTCAAACGAGAAGCATATGGCTGATCCCCGCAACCTATTTAAAGGC
GCGGTCTGATTAAAAGTACCGTCTATAGGTATTCTTAGGAGAACTTCCGCTAACCAATCATGGAT
AGTTCTTTTAAGTCTTTGATTTTCGTAGTTACCATAGCAAATATTCTTCTCTTGCCTGCACCTGC
CATAGAACAACCTAGTCTACCCGTCGCGGGTGGTACTCCTAGATCCTGGCGAGTTGGTAAAAGAG
GCTCTTTGGGTGGATCTTGTTAAGAAGAAATATCTGAGGAACTTG



Found at i:1188716 original size:13 final size:13

Alignment explanation


    Indices: 1188698--1188724  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

    1188688 CCACTCTTGG

                         
    1188698 AAATGGTTAAGAA
          1 AAATGGTTAAGAA

                         
    1188711 AAATGGTTAAGAA
          1 AAATGGTTAAGAA

             
    1188724 A
          1 A

    1188725 GAGTAGTGGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22


Consensus pattern (13 bp):   
AAATGGTTAAGAA

Left flanking sequence: Indices 1188198 -- 1188697
TTCTCTTGCCTGCACCTGCCATAGAACAACCTAGTCTACCCGTCGCGGGTGGTACTCCTAGATCC
TGGCGAGTTGGTAAAAGAGGCTCTTTGGGTGGATCTTGTTAAGAAGAAATATCTGAGGAACTTGG
ATTTCTTCTCTGTCACTGTTCGATCTTCAGATTCCTACACTTGGCGGAGTATTCTGAAAAGCAGA
GGTGTACTAGAGAATGGTATTGCAGTTGATATCGGGAATGAAAGTCAGCTCCTTTTCAGCTCTAA
CGGGGCATTCTTCGTTGATCCCAGGTTTTCCATTGTCGGTCCCGGATCTTCACAAGTTGGAAGAT
TAGATTCTGCCTCTTCGATCCCGCTATTGGTTCCAGCTTTTCTCGAATTCGGTAAACCTTGCCTT
GTCTCGTCACGAGAATGGCCGGAGTCGCTGCAATCGCATGCTCATTGCTTCGGTCCCATCCCGCT
GGGCTACAAGCCTTGGCTTTCTCCATGTTCCCCCTCCACTCTTGG


Right flanking sequence: Indices 1188725 -- 1189224
GAGTAGTGGGTCGGGTATGATATTAAGGGTCTTAACTCCAGTTCCAGTAGTGTGATCGCTGTGGA
AGCGAGTGTCCTTCTTAGATTGCGAAGAATGTCTGCTCTTGGAATCACCCATTCCCTTTTAGCCA
GGTTTCAATTCGCTAGCATTACATAAATGGCATCAGATGAATTACCCTCGCTAAACCCCGAGGAA
TACGAAGCAGATAGATATCCATCTCCGGGACGAAAGCTTTCTCTCGAAAATGAGTCGCTCTCGGG
TTGCGATTTGAAATAGACCCAGAGCAAACAACAAGAAAAGCTATCTTTTAACCGCCTAAGGGGGG
CAAAGAGGGTGAGCCGATAGTAGGCTAATGCCAGGTTGGTTGGATCTCTCTCCTCTGATTCTCCT
CTAGTCGAATAAGGATGCGAAGATGCTAAGGAGCGTAAGTAGCCCAATCCATCATAGAGCGAGTG
CCATTTCGTTAAAGAAAGACTGATTCTTTTGCCTTTCTTCCTATG



Found at i:1192263 original size:23 final size:23

Alignment explanation


    Indices: 1192233--1192279  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1192223 GGTATCAAGA

                                   
    1192233 ACTGAGTCGTTTTCTTCTTGACT
          1 ACTGAGTCGTTTTCTTCTTGACT

                                   
    1192256 ACTGAGTCGTTTTCTTCTTGACT
          1 ACTGAGTCGTTTTCTTCTTGACT

             
    1192279 A
          1 A

    1192280 TGGTTTTGTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47


Consensus pattern (23 bp):   
ACTGAGTCGTTTTCTTCTTGACT

Left flanking sequence: Indices 1191733 -- 1192232
TCTGTTGGCAAGACTGAGCTTAGCCCATGGGAAATAAAAAAGGAAGAGCCGTATCTTGCACCAGA
CCTTTAATCTGCTTTCGGTATCGTACTTGGGGTTTAAGGACTCCGACTAACTATTCCTCCTCATA
CATCTCAGAATGTTGTTGGAAACAAGTGGGTCTTTCGTATCAAACGGAAATCGTATGGCTCCATT
GATCGGTTTAAAGCTCGGCTAGTTGCCAAGGGTTTTCATCAGCGCCCTGGTTTGGACTTCAAGGA
AACTTTTAGTCTTGTGATTAAACCGGCTACCATTCGGGCCGTTCTCTCTATTGCTCTCTCTCGCA
ACTGGCCTCTCAAGCAATTGGATGTCAATAATGCTTTTATTCAGGGCTCATTGCAAGATGAAGTC
TACATGGCGCAACCCACTGGTTTTGTTGACAAGGATAATCCTTTTCATGTTTGTAAACTTCGGAA
AGCTATCTATGGTTTTAAACAGGCTCCTCGGGCATGGTATCAAGA


Right flanking sequence: Indices 1192280 -- 1192779
TGGTTTTGTGAATTGTACCTCCGATGCTTCTCTTTTTGTTTATCACCGAGATTCTGTTATCATCT
ATTTTCTGGTCTATGTTGATGATCTAATTGTTACTGGCAGCTCCTACTCCGCATTAGCCGCCTTT
CTTGCTGCCATCTCACATAGGTTCTCCTTTCAGGACCTTGGCGATCTTCACTACTTCCTTGGTGT
TGAAGTCGTTCCCACTGCTTCTGGTCTCTTTCTGTCCCAACATAAATATGTTTGTGACTTGCTCG
AGAAATTTAGCATGACTGCTCCCAAGCCTACCTACACACCCATGTCCTCATCCATCCAACTGCGT
CTCAAAGATGGTTCTCAACCGGCTGATGCAACTCTCTATCGAGAGCTTGTCGACTCTCTCTTTCC
TTCTTCTTAAACGAAAGAAAAGTCCTCCACTATAGTTAACGGAGGTGAAGGAGACTCCTACCCAC
GTAGTAATAGCTAGACTGGTCAACCGGGGGTCTTGTAGAGCCTTT



Found at i:1196361 original size:17 final size:17

Alignment explanation


    Indices: 1196328--1196362  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

    1196318 GTCAATTCAT

                      * *    
    1196328 ATATATAAAAGATGGAA
          1 ATATATAAAAAAGGGAA

                             
    1196345 ATATATAAAAAAGGGAA
          1 ATATATAAAAAAGGGAA

             
    1196362 A
          1 A

    1196363 CGAGAAAATT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20


Consensus pattern (17 bp):   
ATATATAAAAAAGGGAA

Left flanking sequence: Indices 1195828 -- 1196327
TGCTTTAAAAAAACTTCATTCCTGGAATGAGAAATGCAGCTGTCTTGGATCTCTTACTCCCCAAG
CTAGGGTAACTAATATGGAAAGTTAACTCGCTTTCCTGTCTTTGATGGAAAGGAACTCTCACTTG
GAATGCCAAGAAAGCTTTGATAGCCGAATTGGCTTGGCTATCTTCTTTTAACGGTAAGTGCTTTG
AGGAAAGCAAGCAGGCAATTAACTGGTCAGTAAAGAAGGCATCTCTATCAGCTTTTTTCGTGAAA
TGAGTGCCTCAGAAAAGACAGAAAGAAGTCTAGACTAGACTTAGTGACTCTACCCGCTACAAAGT
ATATAACAGCTTCAATCGTTCCACTTGCATCCAACCCCGTGATTTTGAGTATCAAGCCAATTTCA
CTAATAGATTGGCGGTTAAACCTGAAAAAAATACGTTTTTTGCCAGCTATACAAAGTGTCAAAGT
TCTCATTTTCGATGTCCCTTTAGGCACGGGAAAACGTCAATTCAT


Right flanking sequence: Indices 1196363 -- 1196862
CGAGAAAATTCTCACATCGGGAAACAAGACAGACTATCTGACTCTACCATGGTCAAGTTCGGGAA
CAAGTTGAATGATGTACTCCGTGAGTGGGGTTAAGGAAAAGAAATGAACTGACCTACTGACATCC
CCTACCTCTACTTTACTTCCATACTTGACAACAATTAAAGAAAGGTAGAAAAGGGTGGAAATGTC
TTCCGGTAGCCTTGTAGGGTTCATTTCCGAGTCAGAAAAAAAAAGAGGTGAAGCCGCTGTATCGA
CGAGAGGTGATGGAGCTACCCATATCCTATCCGCATTCATTAGCAAAAACATTATAGGCATCTTC
CACTAAGCAAGCAAAACTTAAGAGAATTTCGTTGTCAGTCTTCGACCTGTCTTATCATCTATCTT
CACTTAAGATCAAAAAGAACAAAGCCCTTAATAGGGAAATTATAAGACTGAACATGGCATGTAGA
ACAGAACTTGGACTTTGGGACAGAGAAGGGCTTGCTCACGAGCTA



Found at i:1197291 original size:31 final size:31

Alignment explanation


    Indices: 1197256--1197317  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

    1197246 GAAAGAAAGA

                                           
    1197256 TGAGTAGGTTTTTTCTTCTTCATTTGATGCG
          1 TGAGTAGGTTTTTTCTTCTTCATTTGATGCG

                                           
    1197287 TGAGTAGGTTTTTTCTTCTTCATTTGATGCG
          1 TGAGTAGGTTTTTTCTTCTTCATTTGATGCG

    1197318 CCTGAAAGTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.13, C:0.13, G:0.23, T:0.52


Consensus pattern (31 bp):   
TGAGTAGGTTTTTTCTTCTTCATTTGATGCG

Left flanking sequence: Indices 1196756 -- 1197255
TTAAGATCAAAAAGAACAAAGCCCTTAATAGGGAAATTATAAGACTGAACATGGCATGTAGAACA
GAACTTGGACTTTGGGACAGAGAAGGGCTTGCTCACGAGCTAAAAAGGAGTTCATTCCAGTTTGA
TTTGAGCTCAGTGAAGGCCTCATGAAAGAATTTCCCTGGACTTAGGTGACAATTGAGGATTTGAG
CGAGAATGGTAGCCAAGAAAGTCTTTTTACAGAACGGGAGATCTCTTCTGAAAGGCTGAGTCTGA
GGTCTGATTTCGATCATTTTAACCGAAAACCTATATGGCAGAAAGCAGAAGCGCCGGGAAAGAAA
GCTGGCTTAATAGTCACAGCGGATCAGCGACAACCTATCTATATTCTAATACTTACAGCTTTTAT
GCTACACAAAGCTTCAAGAGTAAATAGCTTCATCTGCATACAGCGACAGAGGATCAAGGACTAAG
ACTATTTTGGTATGAAACCTACCTTTCCGGAGAATGAAAGAAAGA


Right flanking sequence: Indices 1197318 -- 1197817
CCTGAAAGTCGGTGTCGTTAGGTTTTCTAGTCACCTGGGTTGGGATCAAAATATCCTAATTAACT
CAATGGATATGTCCGGATCGTTTCGCCTGCACACCCTTTTGAACTGCCTTTTATAAGCGCTTTTG
ATAGCGTGTCTAAGGCATTGTGATAGCTAAGTTAACTCGCTTTCCTTCCATTATGTAAGCTTGTG
GTTACAGTCCTCTACTGAATTAAGTCAATCCCAAAAAGTAACTCTAAATTGGACCTTGGGGTTGA
GCTTGGAAGCAATCTGCATTACTGACTAACGGCGTTTGTGACCTGGTGTGGCAGCGTATCACACT
AATCGATGTTTTTTAAGTCCTGATCAAGAGAGGCTTTGGTCCAGCCATAATGGTTGTGGTATGGT
ATACTGAGGCGATGGTTTTCCTTGCTTTTTGAAAGAAGAAGTTATGACAAAAATACGGGGTCTTT
ACATTGTTCGAGAATCCCATTCAGTAGGCAAGGATCTCTTGTCTT



Found at i:1198864 original size:26 final size:26

Alignment explanation


    Indices: 1198828--1198879  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1198818 AGACCCCAAG

                                      
    1198828 ACCGAAATCCCTTTGTTAATCGCTTT
          1 ACCGAAATCCCTTTGTTAATCGCTTT

                                      
    1198854 ACCGAAATCCCTTTGTTAATCGCTTT
          1 ACCGAAATCCCTTTGTTAATCGCTTT

    1198880 GCTTAAGTTG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38


Consensus pattern (26 bp):   
ACCGAAATCCCTTTGTTAATCGCTTT

Left flanking sequence: Indices 1198328 -- 1198827
CTATGCGCAGGAAGCATTTTTCTTAATCCAATCCAAGACATATCGGAAAAAAAAGAAAAGTATAT
TTCGCGTGAGACCTATATCCGGGGGACAGAAGTGTTCTTGCCTCCGCATTTGAAAGCCCCTCTTG
AAAGCTCTCGATCACTGGCGAGAAAAGGGAATTCAATCGCTTGCTGAGCTGCTTGTTTATAAGCT
ATAGCCGAATGACCCTAGCTTCCATCACATCAACTATAAGAAGAAGAGTTTCGGAAGAATATGCT
TACCTATTTGATAGCCTTAGCTGGCCGTGTCCCCGAGAAGATCTTGTCCAGTTTCTTTCGTAGTA
GATCGAGCCGTATAAATAGTTCTAAAGACTTAAGTCTATTCCGCTTTGGAAAGAATTGTATTCAA
AAGGGCTACCTTAGCCCGACGGAACCGCGCCTTCTTTTCTTTCATTTCATTACTTACAAACCTGC
TTACCCCATTTACTCTTGGTCGAGCGTATGAGCCAAGACCCCAAG


Right flanking sequence: Indices 1198880 -- 1199379
GCTTAAGTTGTCTTGAGATCAGGAAAAAGAAGTCATCAATAGGCGCCTTATCACGGTGCTCCACT
AGAGTGGTTTCCAAACCAATGGCTGAATCTTCTTCTTCTTCTAAGTATGGGTAGTCGAAGACTTC
TGGGTCTTTGAAAGGAGGTAAATTCAAGGGCACATGACCCAAGGGGAAAAGAAAGTGTACAAGTG
AAGTTCTTCTCTTAAGAGATTTCACTTTCAGTGGTTAGAAGGTCGGATATAGGTATAGCCATTTA
GGTCTGGGGGGATGCCTTATCACGTAGGAAGTTCAAATAAAGCAGGCCATCTCTATCGAAAGCTT
AAAGTACCTGAGGTGCTTGACCTTGATTGGAAAGTTCTTCCTTATAGCGATGAGCCTTAACGACC
ATACCTGATCCAAGGGGGCCTAAAGTAACTTCCTCAGCCTGGACTGGCTCGCTAGCAAGATGAAG
ATGCTCATACTAGCTCCAAGAGCTCAAGCAACTCTATCAGTGGAC



Found at i:1199500 original size:24 final size:24

Alignment explanation


    Indices: 1199473--1199520  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

    1199463 ATCCTCAACG

                                    
    1199473 CAAGGGGAATTGTTTCCTTTTTAA
          1 CAAGGGGAATTGTTTCCTTTTTAA

                                    
    1199497 CAAGGGGAATTGTTTCCTTTTTAA
          1 CAAGGGGAATTGTTTCCTTTTTAA

    1199521 TCGGAATGAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42


Consensus pattern (24 bp):   
CAAGGGGAATTGTTTCCTTTTTAA

Left flanking sequence: Indices 1198973 -- 1199472
CTTCTTCTTCTTCTAAGTATGGGTAGTCGAAGACTTCTGGGTCTTTGAAAGGAGGTAAATTCAAG
GGCACATGACCCAAGGGGAAAAGAAAGTGTACAAGTGAAGTTCTTCTCTTAAGAGATTTCACTTT
CAGTGGTTAGAAGGTCGGATATAGGTATAGCCATTTAGGTCTGGGGGGATGCCTTATCACGTAGG
AAGTTCAAATAAAGCAGGCCATCTCTATCGAAAGCTTAAAGTACCTGAGGTGCTTGACCTTGATT
GGAAAGTTCTTCCTTATAGCGATGAGCCTTAACGACCATACCTGATCCAAGGGGGCCTAAAGTAA
CTTCCTCAGCCTGGACTGGCTCGCTAGCAAGATGAAGATGCTCATACTAGCTCCAAGAGCTCAAG
CAACTCTATCAGTGGACGGTGCCCTACATCTCCCTGTCCTACTTATCCCGCTTCTCCTATTAGCA
AGTAGGTCTACGAAAGCAAGCGTAAGAGCAGATCTATCCTCAACG


Right flanking sequence: Indices 1199521 -- 1200020
TCGGAATGAAGAAGGTGAATTCGGCGATCTCTCTATAGAACCTTTCTCACTTCGACTTAGGAAAA
GAGGCCAGGTTCGGTATATGCCCTCCAAGTCTATTCGCTTGAAAGCCTGAGGAGCCTCAAAAAAA
AGCCTTGACGAAAGAAGGCTTGTGGCTGTGGTTGTCATAACTTCTGTCTATCTGCTGTTAAATGA
CTTTATAGAGTCCTAAGGGTAGTCTCAAAGATAAGGGATTCAAGCCGTATTAGTTTTTTTTTAGC
TGTCCCAGGGAAAGGAGTAAGTATTGGCTGTTGGCATGTCCGAGCTAAGATCGGTTGAGGCGGAT
AAAGACGGTTGCCTAGCTTACTTGGTAAAGGACTCCTTTTGTTTAGTGGTCATGGATCGATTCTA
GGTGGTTAACTATTCTCAGAGTTCACGTTCTGATTTAGAAAATCGACTTTTCAGATGAGTTCCAT
AGTTTTGGACAGGACAGGTGGAGGTCAAGCTTCTCTTAAAGCAAT



Found at i:1200900 original size:11 final size:10

Alignment explanation


    Indices: 1200865--1200914  Score: 50
    Period size: 11  Copynumber: 5.0  Consensus size: 10

    1200855 GATTCATTTC

                      
    1200865 TTTCTATTC-
          1 TTTCTATTCA

                    * 
    1200874 TTTCTATTGA
          1 TTTCTATTCA

                       
    1200884 -TTCTATATCA
          1 TTTCTAT-TCA

                       
    1200894 TTTCTATTCTA
          1 TTTCTATTC-A

                 *    
    1200905 TTTCTGTTCA
          1 TTTCTATTCA

    1200915 CCTATGGGTT


Statistics
Matches: 34,  Mismatches: 3, Indels: 7
        0.77            0.07        0.16

Matches are distributed among these distances:
   9   14  0.41
  10    5  0.15
  11   15  0.44

ACGTcount: A:0.18, C:0.18, G:0.04, T:0.60


Consensus pattern (10 bp):   
TTTCTATTCA

Left flanking sequence: Indices 1200365 -- 1200864
AGTCATCTAATCTTAGGCTTCGCTACCTGACTTATCAGCCTGCAAGTAAACTACCCTAACCCCCA
ACAATATCAGTAAGGAGTTGGCAGCCTTTCGAGCTAGGAGTTGAACCAAGGTCGATATTTCGGAT
TTAGATATAGTAGTTCCCAAGTATGATATAGGAAGGAATAGAGTCAAGGCCATTGTAGAGTAAAC
GTCCCTTTTAAGGGTCTATGGCTTCATGGAGGATTCCTCATATTTGCTGATGCCATTGGGCTTTC
CTACCCCATTCTGTTCTGTTGTTTTATGTCGGAAGCTTGCCTTGCTTTCATACAGGTGCTGCATG
GCTGTCGTTGACTTTAGGACTTGACCCACCAACCGCGGTCCACACGTAGTACCCATACCCCATAC
TATCCTCCCTAAGATCCACACGAGGCGATCCCGGGAATATCATTATATAAGTATAGAATGAATGT
AAATAGGAATCCCTTTTGAGTTGACTATGAGTTTCGATTCATTTC


Right flanking sequence: Indices 1200915 -- 1201414
CCTATGGGTTGGTTCAACCTGTTCTACGCTTCCATGGGTCTAAAGCTTTTAACATACTCAGGGGT
ACTAACCTTCTGAAATCAAGACCAGAAGAGTCTCATTCAAACCTGAAGGGAATTCACCATGCGAA
AAGGCATCTCTCACCAACTGTACCAAGTCTTGCTTCGTAGATTCCCAGAACTTTTGATAGAACCC
TGCTTGGAAACCATACACACCAGGAGCCTGCTAAGGCTAAAAATTAGAATGATGAGGACAGCCGA
GCTGGTCTCTCCCTCAGCGAAAGTCAATTTCTCGTCAATTCGGCTAAAGCTCTTTCAGGCCTTAC
TGTGTCCTTCTTGTCTAACTCCTTTCTGCCGGTTTTAGCTACTTCTTACATCATGAGCAGAAAAA
GACGAAAGAAGCAAGACCACTAGAAAAACTGAATCAAGTAGAACCAGAAGCTCAATCCTTTATCC
CGGACTTGGGTTAATAAGGACTACTGTTCTCTCCCCTTTTCTTGG



Found at i:1202536 original size:26 final size:26

Alignment explanation


    Indices: 1202500--1202551  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1202490 TTCTGCCCAC

                                      
    1202500 TGAAGACAATTTGATTAGGATTCATT
          1 TGAAGACAATTTGATTAGGATTCATT

                                      
    1202526 TGAAGACAATTTGATTAGGATTCATT
          1 TGAAGACAATTTGATTAGGATTCATT

    1202552 CCGTATCTCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38


Consensus pattern (26 bp):   
TGAAGACAATTTGATTAGGATTCATT

Left flanking sequence: Indices 1202000 -- 1202499
ACTTAGAATAAGGAATTAATCCGCTGATCCAATAGAATAGGCAGGCTTTGAAGCTGACTAAGGCT
CTTGAGTCGACGAGCTGGAGAGGAGTGTTCACTAAGATAGAAAGCTCTTTTCGATCTACTATCTA
ATGTATGGGAGAGCGAAAGAAAACTGGTACTTTAATTGCAGTGGATTCTTTTATGACTCCAACTT
CTTACTCACTGTCTAGATGATCTATGGCTCAACCTGTTCTATTTGAAAAACCGGAAGTGCGAATT
AGAATTTCGTATTGTGATAACGTTTTCCGGGGATCATGCAAGGGAATTGGTGTGCCGGGCGATGG
CGAAGAAGATCCCTTAGATCGTTCAGAACTACATAATATTAGAGAGTCACATTCCCGCAACCTAT
AATACTAGAATCGATAGTTCCCCTATGAACAACTTCTACTCCACTGCTTAGTTAATCGAACCGAA
CTCTAACTCAAGGAATAGTATAAAGTCTAGAGCTCTTCTGCCCAC


Right flanking sequence: Indices 1202552 -- 1203051
CCGTATCTCTAATAGCGGCTGTAAAGGTTGAGGGAGATTCTTTATATCTTATTCGTTTATTCCCC
AGTCCAACCAATAAATTCAACAACTAGGTTTGACAAACCTTCGAAAAAAACAAATGAATAATAGG
AAGTCAACCGGAAATGCATTCTTACAAGGTGCGCGTTTAGCCCTTACTTTTAGTCATATAGATTA
TCCCCCTTCTATACTACATACACTGGTACGAGCAAAAAAGGAATCTGCCTTGCTTTCTTGAGCTA
GTCTGGTAGCGGAACTTGCAGAGCGATAGCGAACCCTGCTAAAAGAAGAAGGTAAAAGCGCTAAG
AGAAGAGTGACCGCATTCATCTAGGGTCACTCGAACGCTCATACTGCCTTTCCTTCTAGACCTTC
TTCCTTTTTCTTTCCTCACTGATTGAATAGCGACCTTTTCCCTCTTCGATTCTCATGTCGGTTCA
TTCTAAGGGACTACCTATGCCCTAACTGAACACTTAGCCGCTTTC



Found at i:1212963 original size:21 final size:21

Alignment explanation


    Indices: 1212939--1212983  Score: 90
    Period size: 21  Copynumber: 2.1  Consensus size: 21

    1212929 TCCACCGCCT

                                 
    1212939 AGGACGAAGTAGGTTATGTAA
          1 AGGACGAAGTAGGTTATGTAA

                                 
    1212960 AGGACGAAGTAGGTTATGTAA
          1 AGGACGAAGTAGGTTATGTAA

               
    1212981 AGG
          1 AGG

    1212984 CTCAGAAGGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.38, C:0.04, G:0.36, T:0.22


Consensus pattern (21 bp):   
AGGACGAAGTAGGTTATGTAA

Left flanking sequence: Indices 1212439 -- 1212938
TGGGCTAGGCTACTATAAGGGACAGATCCGACAGTCAGCTCAAGCTCTGGGTCAGCATTTCTTTT
AACAGCTGCAAGCAAAGAGAGCTGAGAACGAACAAGCAGTCGAACAATAGGTTTGGGGACCGTAA
AGTCAGTCAAGGCAGTCGGCGGAGAGCCTTAATGGATAGGGAATTTTCTAGTTTATGAAGAGGTT
AGTTAATGGCTGGATTCAATTTCAAGCTTACTTAATACGATGATACTGTGCTAACGCGGTTCAAC
CAAAGCCTTCTGTACACTTTCGCCATAGATATCATGTTATCTGAGAAGCCTATTTTCGTAATAGA
GCGGTATTCGTCTGTACACTCAGAGCAACAACTCTGAAAGCTTGGCTTGCTAATTGATTATACAG
ATCGATTGAGCACAGAAAAAGAATCAAACTAACGGGGCAGATTGCTTGCAAGATGATGTGGTGGG
TCTACCTATTCCTAGCGAAGCCGAAATGTATCGAATCCACCGCCT


Right flanking sequence: Indices 1212984 -- 1213483
CTCAGAAGGTTTTCCGATGTTGTGCCCCTTTTAGTAAGTAGGTGCAGTAAGTAGGGGAAAGCCAA
GTCATCTTGTATCAGGCGGGTAAGAAGGTAGGCAGGCATAAAGAAGGGTATGGGTCGAGGGAAGA
TGTTAGCAACGATGAGTTTGAGAATCAATGATATAGAAGACGAGTCTAACTCGCTGGACCATAAA
AAAAGCAATCCTTACGTCTAATCACCGAGCTTCGCTTGTACCGTCTTGAAACTACGAGAGGCGAA
AAGGCGTTCTCGAAATGCGAAAAAGCGTCTACAGACACAACTAAGAAATCGAAGCGGCAGGAACA
ACTGAATCAATACTAGCAGGTTAGGACATGTCTGATTATTATGCAACGAAGGTTTTTGTTTTAGT
CTAGATTGCGTCTGGATTGTTAGAGATTGATCATTAGCTATATCGGCTTGTATCAGGCATCTACT
CTAGTGTATCGGTCCTACATTCCTATCTTTCTAGAAAGGCATAGA



Found at i:1217962 original size:22 final size:22

Alignment explanation


    Indices: 1217934--1217977  Score: 70
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1217924 ACAATACTGT

                                  
    1217934 ACACTTGACCTGTCAACGGGTA
          1 ACACTTGACCTGTCAACGGGTA

                       *   *      
    1217956 ACACTTGACCTTTCATCGGGTA
          1 ACACTTGACCTGTCAACGGGTA

    1217978 TTATTAAAGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27


Consensus pattern (22 bp):   
ACACTTGACCTGTCAACGGGTA

Left flanking sequence: Indices 1217434 -- 1217933
AGATAAGGAAAGGTGGTGGACCTCGGATGGAATGAGAAAGCTTATCCCCTTCTTACTCGACAAGA
AATGCGATCTGCAGTGCATCAGGGTCTGTCTCATGTTGAATCCCGATTACAGACTTGACTAAAAT
GCGTCAATACCCCAGCGAGCAAATGAGATACGAGCTAATGAGCGGAGAACGCTATGCCCGCAGCT
ACTCCTAACAGAGCAGAGCCTCTTCTTTACTAATCTGCTTTTATGGTTTAGGACGTGGGAGAGTG
AACGCCTTGTCTTTTTCCATTGGTGAGCCGCGAAGGGGCTGATGCCACTATCAGTATTTCACTCG
GCTCGGGGAGATTATTCAAAATATGAAAACTTTTTATAAACCCCGTGAAAATAGGGCATGATGGT
CTTTCAGAGCCTAAATTGAATTCAAAATCTGCAACAAAATGATAAGACGAAGGAAGTCCGAGGTT
CTATTATTACGTTACGATATAACGTTCCCAGCTTAACAATACTGT


Right flanking sequence: Indices 1217978 -- 1218477
TTATTAAAGATCTATTTCTCGCAAAAAGTTCATGGTCAGAACAAGCAAGCCGACAACGAGCAGTA
CTCGGGTCGGACGCAAATGCAGAGGATGAAGTAGTGCTGAGTCGACAGACTCAGGTAGACATAAA
CTATGGGGTGCACGCCGAGGATCCATCCCTACCGAAGAAAAAACCTTTGCACGCCGCCCTTTCTA
GTAATCTATCTTGCATTGTTTTTCCCATGACTGATCAAAGTAGCTAGGCATCTGATTTGAATACT
TCATTTTCTATCTCTATGCAACTCGATCGTACACCCGCGGTGACCGGCTTTCACGAGATCATTTC
GATCTACGCATGGTGAAAGCGCTACTGGTCGCAAGCTTCTAAATCGTAGATGAAAAAGAGAAGAT
CATTCATATTCAATTGACTTATTATATACGAAATTTCTCGAGAATGAATCCCCTTACCTTAGAGC
TGAAATGTAGGTGCTACCGGGACCAACCCATGAAACGATAGGAAG



Found at i:1221840 original size:17 final size:17

Alignment explanation


    Indices: 1221818--1221851  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

    1221808 TCTAATCTAG

                             
    1221818 TCTTATCTCGTACTAAA
          1 TCTTATCTCGTACTAAA

                       *     
    1221835 TCTTATCTCGTGCTAAA
          1 TCTTATCTCGTACTAAA

    1221852 GGTCTCCTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41


Consensus pattern (17 bp):   
TCTTATCTCGTACTAAA

Left flanking sequence: Indices 1221318 -- 1221817
GCATACTAGTCAACAACAAAAGAAACTGCAAAGGAGGATTCTGAGATTGGGGGAGGGATAGCTGC
TAAGCCTTTGATCCCTAAAGAAGTAAAAGAAGAGAAAGATGAATCCAACTCGATAGCAAGCAGTT
GAACGGAGAGCTGCTAATTCCCCTTTTTTTCATGAATGCTCTACTTAACTCGCAGCTGTTGAGTA
AGAACCTATGGGGGTTTCATACTAGGAATCAAAATCAACTACTTACGAACTAAACCCTTGCTCTC
ACGCCAATAGGTATTTAGACAGAAGCTCCATCTATTTTCTTTTACTTGAGCTTAGCCGAACAACT
TAGCTTTCTAGAAAGATAAGTAATATCACCATCAGCTAAAGCGCTAATGGCACACGAACGTTTAT
AAGGTCCAGCTGCTGTCTAGTATCTCCCAATATGCTCTTTTACAGGCCTGCGGTTTATTAGATAA
AGCTCTTTCACTAGGAGTTGGTATCTAAAGTAGTATCTAATCTAG


Right flanking sequence: Indices 1221852 -- 1222351
GGTCTCCTCACAGGAAATCAACAAACAATCCACTACTTCCCTAACCTCCGACTCTCGCACTCTTT
TCTCAAGTAAGTAAGTAGGTAGAGCGAAAGAAAAGGGATTTATAAGCTATTCAAAATCCCGGGAA
CAAGAACTGGACTGATTTCTTACTTTACGAGGAAGGGAAGGCAGGGGAATTAGCTCGACGCTCTT
TGCTTGGAGTCCCAAAAGGTGTTATAAGCTGTAAGCTACTTACTCGTTTATGAGTAGTTGTTCCT
ATTGGTCCAGAACTCGCGGTATCGGCTTTCGCAACAATGGCTTAAGCTTTCGAGTTCATAGAATT
CCACCCCTAACCTTCTATCAAACCTTTCCACGACTTTCGCTTCGGACGCGGAAGAAGGCCTCCCT
CCGTGAGGGCCCGAGCCATCAGTGAGTCATGCTCTGATTTCTGATGAAGCTGCATTCGGAATTCG
AAAGTACTGTAATTTATCATCTGACGGTTCCAATGATGAGTGCGT



Found at i:1223271 original size:25 final size:25

Alignment explanation


    Indices: 1223239--1223288  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1223229 CTAGATAAGT

                                     
    1223239 GTTAAATCCTGTTTGTTAATGTGAA
          1 GTTAAATCCTGTTTGTTAATGTGAA

                                     
    1223264 GTTAAATCCTGTTTGTTAATGTGAA
          1 GTTAAATCCTGTTTGTTAATGTGAA

    1223289 AGGTTTTTGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44


Consensus pattern (25 bp):   
GTTAAATCCTGTTTGTTAATGTGAA

Left flanking sequence: Indices 1222739 -- 1223238
TAATGGCTAACGGATTCAGAGTCTGGTTTTTCAGGTAAACAAAGTCTTTTCCCAAAATCCTATTT
TCTCCCATATATGCTACATATCATCATTGCATTTTTTAGTGGATGAACATGGAACATGAACAGCC
GAAAAGCAGCCTAAAAGTGAACCCAAAACTTTCCCGGACTGACAATTAGAATTTTTATCACAATT
CACATAGGAAAAATTCACCCTTTTATTAAGGCTTTGACATCTAAAATTGCATTGTTTGTAAACCT
TGCTTATCTTCATTGGATGTAATGCAGCGGTGATACAGTATGGAAGGGTACCTCTTACTTCAACC
AAGTACTCCATTAACAAGATGAAGCTTCCTATTAAAACTCAGTGGCATTCTTGCTACCTTGATGC
AGAGGTAAGTTTTCTTTCAATTCCAATCTTCTCTTTGCCATATATCAGCTCTGGTTCCTGTCAAA
TCATAAGTCGAATACTCATATATATAGTAAAACTACTAGATAAGT


Right flanking sequence: Indices 1223289 -- 1223788
AGGTTTTTGGACTCTTGAAACCACTAATCCGTAGAGCATTTTTCAAAGTCACAAACCGTGGGTAA
AGTGGATTGACAGATTTGCCTTTCAAATGGTAATATTTTTGTATGGCAGGTTGGTGGTTCTACTC
AGGTGTACAAGGGAGATTTGACATTTGCAACCGTAAGAGGGGCGGGGCACCAAGTGCCAAGCTAC
CAACCCTCAAGCCAATAAAGAGCGGATTCGTACCATCCTGTTAAAGAGTCGAGTTGAATCCAGCT
AATTCGTGTGATCCGATCATCTCTTCAAGAACCGATTCCAAGAAAGCCCATCATTAACAAATAAA
CTTCTGGTCTTGACTGGGCTTCTCGATGGTTACTTGTCTTCTGGGGGAAGAAAAGGAAGGCAAGT
TAAGTTCAAGCTAACTAGCATAGAAAGTACTTACGCCGGGTTTGATAGCTATGTATTTATTGACG
AGAGGGAATTATCTTCTGAAACAACCCCTTCGCTTTATAAAGGGG



Found at i:1224656 original size:15 final size:15

Alignment explanation


    Indices: 1224608--1224657  Score: 55
    Period size: 15  Copynumber: 3.3  Consensus size: 15

    1224598 CACCCCTTCT

                           
    1224608 CCTTACGTCTCATCC
          1 CCTTACGTCTCATCC

                 * * * *  *
    1224623 CCTTAGGCCACTTCT
          1 CCTTACGTCTCATCC

                           
    1224638 CCTTACGTCTCATCC
          1 CCTTACGTCTCATCC

                 
    1224653 CCTTA
          1 CCTTA

    1224658 TACCCCTTAT


Statistics
Matches: 25,  Mismatches: 10, Indels: 0
        0.71            0.29        0.00

Matches are distributed among these distances:
  15   25  1.00

ACGTcount: A:0.14, C:0.44, G:0.08, T:0.34


Consensus pattern (15 bp):   
CCTTACGTCTCATCC

Left flanking sequence: Indices 1224108 -- 1224607
CCATTAAACAACTTAAGCCTTGCAATTGCTTATGCAGCAGGAGCAGTACCTCTTACCTATCATTC
GGGTGCAGATTCTAATAGCTTAGATAGAAGTCGAAGTCGTATCATCGGAAATTGATTCACTTCCT
AAGAATAAGAAGGCATTCTCTTGCTAACAAGCCATTCTTCCCTTACGTGGTAATTCGCTTTCTTT
TAGGTTCTATCTTCCAAATTCACAAGAATCGGGAAATGGTCGGGATGTAGTAAGTTGCATTTTCC
CGTTTAACGTTTTACAGGGATTTCTCATAGGCAGCCAGTCAGGCTAAAGGGCGAGTAAAGGTCAC
CAGTCCTTAATAAACAATAAACACAAACCCCGGGACTAGAAAAAGGCCTAGCTGAAGTACCTATC
AGACGTGGAATAAAGGCATAGAAGGAAGGTCGCTCTTATGCTGTCTTACCCAAAAGACAGAAGAG
ATAGAGATAAAGAGTGCGGGAAAGAAAAGAAGATTCACCCCTTCT


Right flanking sequence: Indices 1224658 -- 1225157
TACCCCTTATTCTTACTCAACGGAGAGAAAAAAGAGAGGAATACGCACTTACTTAAAGGATTAAC
TTCGGGTTTCGAGCGAGTTCCTGATTGATGCAAGTTTCTAGAATCGATTCCTTTTACTTTTAGTC
CGGTACCGAAACCAGATGCAAAGGGATTGAGTGTTAGGGAAGTTGTTGATTCTCCTTACGGACCC
CTCGGTTCTTACTTACTCAAGGTAATACTAGAACTTTGGAAATCAATTCCATGTGTCAGCTAGAT
TGTTTGCTCTCTTGATGCGAGATTCCCGATAATCGGATTTGTCATTCAATAAGGGTCATACTTTC
AAAGCGAGTTCAGAGACGGAAGCTACCCCAAAGCCATCAATTCCGCCATCAGGACCCGGGGCTTT
CAGTGCCCACATTTGATTGAAAGACAGCTTCAGTCACTTCTTCATCAGCGAAAGAAATCATCTCT
GCTTCTCACACAACTAACTTCTCTGGTGAGATAGATCCTTAACTA



Found at i:1224673 original size:30 final size:30

Alignment explanation


    Indices: 1224599--1224665  Score: 107
    Period size: 30  Copynumber: 2.2  Consensus size: 30

    1224589 AAGAAGATTC

                                          
    1224599 ACCCCTTCTCCTTACGTCTCATCCCCTTAG
          1 ACCCCTTCTCCTTACGTCTCATCCCCTTAG

            *  *                         *
    1224629 GCCACTTCTCCTTACGTCTCATCCCCTTAT
          1 ACCCCTTCTCCTTACGTCTCATCCCCTTAG

                   
    1224659 ACCCCTT
          1 ACCCCTT

    1224666 ATTCTTACTC


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.13, C:0.46, G:0.06, T:0.34


Consensus pattern (30 bp):   
ACCCCTTCTCCTTACGTCTCATCCCCTTAG

Left flanking sequence: Indices 1224099 -- 1224598
GAAGAGATTCCATTAAACAACTTAAGCCTTGCAATTGCTTATGCAGCAGGAGCAGTACCTCTTAC
CTATCATTCGGGTGCAGATTCTAATAGCTTAGATAGAAGTCGAAGTCGTATCATCGGAAATTGAT
TCACTTCCTAAGAATAAGAAGGCATTCTCTTGCTAACAAGCCATTCTTCCCTTACGTGGTAATTC
GCTTTCTTTTAGGTTCTATCTTCCAAATTCACAAGAATCGGGAAATGGTCGGGATGTAGTAAGTT
GCATTTTCCCGTTTAACGTTTTACAGGGATTTCTCATAGGCAGCCAGTCAGGCTAAAGGGCGAGT
AAAGGTCACCAGTCCTTAATAAACAATAAACACAAACCCCGGGACTAGAAAAAGGCCTAGCTGAA
GTACCTATCAGACGTGGAATAAAGGCATAGAAGGAAGGTCGCTCTTATGCTGTCTTACCCAAAAG
ACAGAAGAGATAGAGATAAAGAGTGCGGGAAAGAAAAGAAGATTC


Right flanking sequence: Indices 1224666 -- 1225165
ATTCTTACTCAACGGAGAGAAAAAAGAGAGGAATACGCACTTACTTAAAGGATTAACTTCGGGTT
TCGAGCGAGTTCCTGATTGATGCAAGTTTCTAGAATCGATTCCTTTTACTTTTAGTCCGGTACCG
AAACCAGATGCAAAGGGATTGAGTGTTAGGGAAGTTGTTGATTCTCCTTACGGACCCCTCGGTTC
TTACTTACTCAAGGTAATACTAGAACTTTGGAAATCAATTCCATGTGTCAGCTAGATTGTTTGCT
CTCTTGATGCGAGATTCCCGATAATCGGATTTGTCATTCAATAAGGGTCATACTTTCAAAGCGAG
TTCAGAGACGGAAGCTACCCCAAAGCCATCAATTCCGCCATCAGGACCCGGGGCTTTCAGTGCCC
ACATTTGATTGAAAGACAGCTTCAGTCACTTCTTCATCAGCGAAAGAAATCATCTCTGCTTCTCA
CACAACTAACTTCTCTGGTGAGATAGATCCTTAACTAAAGACAAG



Found at i:1226783 original size:19 final size:19

Alignment explanation


    Indices: 1226759--1226802  Score: 88
    Period size: 19  Copynumber: 2.3  Consensus size: 19

    1226749 CAAGGTAGGT

                               
    1226759 AAAGATGAATTGGTTTAGC
          1 AAAGATGAATTGGTTTAGC

                               
    1226778 AAAGATGAATTGGTTTAGC
          1 AAAGATGAATTGGTTTAGC

                  
    1226797 AAAGAT
          1 AAAGAT

    1226803 ATACAGTTAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30


Consensus pattern (19 bp):   
AAAGATGAATTGGTTTAGC

Left flanking sequence: Indices 1226259 -- 1226758
GGGTAAGAGGCTGCAACTAGGGTTCAATTCCCTATCGCTCGTAGGCAACAACACTGTGACAATGT
TCTTAACTTTCTGCCTTTCTGCGAGGTAAGGTACAATTTCACGACTTGTCGTTTGGCTTCCGCCC
TAATAAGTCCTCGTAGCGAAATATCATATATAACTTTTCGTCACTCGGAATTCCCACTCTTCTCG
GAAAGAAAGAGCGAGCCACCTTCTCAAGGTGATTAAAGCGCTTACTCTGTCAAATAGACCCGGAA
AAGGCAAAGCTAATCCGAAGCCTTGAGTTTATATCTCTGTTTTGTTTTGTCTTCCTTATTAGCAG
GCTCAAGGTCATCAGCTGGGAGGTTAGTTGTTTGAGAAAAGGTCACGAGTCCCTAAACAAATCCA
AGGAAATAATTGAAAGGAGAGCACCTATGCTTCTTCATCGATTCTTCGAGGAGTAGAGGCAGCCT
TCGATAATTAGTCAACCGGACACCTTAACAAAAGCCAAGGTAGGT


Right flanking sequence: Indices 1226803 -- 1227302
ATACAGTTAAGGTAGAATCAAAAGCACTATCATTTTCGAGAACTAGAAAAGTCTAACTCGATTCT
AGATACTTGATTGAACTGAAACCTGGGGAGTTTGATAAAGATTATGACCCGGAGACTCTAAGCTT
CCCGTTCTTCTTGACTATGGTTCCGTACGGGATAGAAAGAAATCTCTTCTCTCAACGAGCCTGAG
AGAGTGGGCTCTTTATATAGCACATGAGCTTGAAGTTCTAGATTTCCCAGCCCTTGAGTGAAAGA
GTTGTTCTATTCTAGCCGCGAGTCTGTCTTTCTTTCCTTGGGGAAGCTAACCAATTTACAAGAAG
CTATTGACTCCCCCTTAATTAATGGTAAGAAGGTCCCGTTAAAGCTGTTTTCCCATGGAGTAAGA
ACCTATGGGCTTTGAGAATCTATGCGAATAATCATCTCTATCTCTCTAGCTGCTAGCGGATTGGT
TGTCTCTCTCGTTGTCTGCTTTTCCTCGAGTTTCTTTGCTAGCGA



Found at i:1227685 original size:14 final size:14

Alignment explanation


    Indices: 1227666--1227694  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

    1227656 AATTTCGAAA

                          
    1227666 TATTCTTCTTTATG
          1 TATTCTTCTTTATG

                          
    1227680 TATTCTTCTTTATG
          1 TATTCTTCTTTATG

             
    1227694 T
          1 T

    1227695 TTTACCGTCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66


Consensus pattern (14 bp):   
TATTCTTCTTTATG

Left flanking sequence: Indices 1227166 -- 1227665
TTAAAGCTGTTTTCCCATGGAGTAAGAACCTATGGGCTTTGAGAATCTATGCGAATAATCATCTC
TATCTCTCTAGCTGCTAGCGGATTGGTTGTCTCTCTCGTTGTCTGCTTTTCCTCGAGTTTCTTTG
CTAGCGAGCGGATATATCCCTTCCTTTACAAAGAGCTAACTCTAACGCTATGCCCGCAGCTCTTC
CTTCTGCTTTCTTGCTTCTAGGGAAGTTGGATAAGGTGCTTTCTATATCCGAAATCAATACCGCA
CTCGCAATCAAGAGTAGTAATCGCACATGGAGAAGGCGTAATGATCTGCTGGAGCAGCTTCCTAG
CGATAACATTCGAACTGGCATACGAGCCCGATCCTTATTCAATTCCCTTTCCTGACCTTACATGC
GCGCGAGATAAAGTACATACGCATAGACATAGACACGATCGAGTTATGGCACTGCAACTAAGTAT
TCAAGAAAGTCTCAGGCGATTAAGTAGGTAGGTACAATTTCGAAA


Right flanking sequence: Indices 1227695 -- 1228194
TTTACCGTCTTTGAAGAATATGAAAAACTGAGGAACTGAGTACAGTCAAATTCCTAATACTCGCA
ACAAGTTCAGGGGAGAGATTCATAGATTCGGAGGATAAGAGGGTTTCAGACATGCAAGTTGAAAG
CGATTGTTGGGATGTAGTTTACTCTTATGTATGTTATTTACCTCCTTCCGAGAATAACTCTTTCG
ATTAGGGACTGGTCTCTACCTTGAACTTCTTTTCTTGTCTTTGTTGTCAGACTCGTGGGAAGACC
AGAAAGCCTTAGCCAATGCATCTGCTTTGGCTTCCTTTGAAGAAAGCTATGCTCGTCAGCTAGTC
TATTTTTTCTACTGGTCCTTCTTCTCTTTCCTTTTCTATGGCGTATGGGGAAAAGGGTTCAGTCG
ATTATTCCATCAAAGAAAACTAGCCCTTCGAAAGCCCCAGAACCGGACTCTAGCTATCGAATAGG
ATAAGGTGTTTTCCGGCTAGTTGATAATCTCCGAATTCCCTAACC



Found at i:1242095 original size:20 final size:20

Alignment explanation


    Indices: 1242070--1242110  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

    1242060 ATGATTCTGG

                                
    1242070 TAATAATAATAAGACTGTTT
          1 TAATAATAATAAGACTGTTT

                                
    1242090 TAATAATAATAAGACTGTTT
          1 TAATAATAATAAGACTGTTT

             
    1242110 T
          1 T

    1242111 TGGGGCTTCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41


Consensus pattern (20 bp):   
TAATAATAATAAGACTGTTT

Left flanking sequence: Indices 1241570 -- 1242069
ATTTTACTTGACTTGCTAGAGAGACGGTTAAGGCGATTCCTTACTTGCTCCGGTAGGGTAATTCG
CATTGATCAGAATACGGAAGATGTTCGTAGAGGGGGATTCACAAGGGTTTGTATTGATTTGGATT
TAATCAAAGCATTGTCTTCCTCTGTGAGTCTGGACAAGGTTTGTCTGCGTGTTGAATATGAGGGA
CTAGAGTTGATTTGTTTTCTATGTGGTAAGTTTGGTCATAGGAAGGATTCATGTCCCATGATCAC
TACTGCTGTTTCCGATACTGATAAAGTTCCTTCTTCTCCGACTCATCTTACGTCGGACATGCCTT
ATGGTACACCTTTACAGCCGCCGTAAACGTCTTTTGGCCCTTGGATGCTGGTGCAGCGCAAAACG
CGCAACCCGGTGAGAGTCCAAGCTTCAAATGGTAAGTCTAAGGTTGGGAGAGATTCTCGGCATGA
CATGGGGAGCAGAGCAACCTTGAATCACGTTGTAGATGATTCTGG


Right flanking sequence: Indices 1242111 -- 1242610
TGGGGCTTCTTTGAAGGATTATGTTTTTTCATAATAAAAGTGGTGTTACGACTGGGACGAAAAAA
GAATGTAGTCCGAGGAAAAAGGGGGGATTCAAATTCACCCGTCGAAAGAGGAGGTTCAACGTAAG
AAAGAAGGTGTCTATTTGACTGGTAAGTCTAAGGTTGTTGAGTTTGATACAACTACTATTTAATT
TATTCGCTTCTCCTGCTTCAGTGAAAGCAATTGGATTTGTTGGTTCATGAAAGTTTATAGGAAAG
ATAATGAGAAGGAAGAGACCAAACCTCAAGGCCGGACTAAAGAAGATAGGGGATTCTCCTATCTT
CATTTCAAGGAAGGGTTGGGATAGATAGGCTACAGGAAGACTGTAAGTTGGCGCTTTGGTTTGGG
AGTAGGGAATGGTAAAGCTGAATCCACTGCAACTCCAGGCTTAAAGTCTTGCTCGTTGCCGCCAC
CTTCTTCAATAAACAAGACTCAGCTCTATGGCCGACGATGCCACA



Found at i:1245396 original size:13 final size:13

Alignment explanation


    Indices: 1245378--1245402  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

    1245368 AATCCTGTTG

                         
    1245378 GCGCGTATCGTCT
          1 GCGCGTATCGTCT

                        
    1245391 GCGCGTATCGTC
          1 GCGCGTATCGTC

    1245403 CGCAGTTCAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28


Consensus pattern (13 bp):   
GCGCGTATCGTCT

Left flanking sequence: Indices 1244878 -- 1245377
AAGATGAAAGCTCCATCCGCCCTTGTTAGCTTTTCCTCATTCAACAAGAGACATTGCAGAAAAAA
CATTAGATGGTGTTAGAGCGATTCCTTCTTTTACGCCCTTGGGGACTCTACCACGAACGAACGTA
TAAAGAGGGGAAATGGCAGAGCGCTTTCGAACCTAGCGCTCATGCAGAACTTGCTTACTAGTCTT
TACGAGCGTAGTCTCGGTTAAACACTGGACCTAAGAACAAGCACAAGAACAAGGTAGGGCCTCAA
ACCTTTCCGTACTTTTAACTCGGAAAAGAGCAGCGGTAGCGGTGATAACGTTTGCGGAAAATAGA
ACCCCACAATCTGTCCCCTGTTGCAAGAGTGGGAAATAGTACCCTTTTCTCTACCGCAAGAGCTA
AGGTCGGGAAGCCAATCGCCCTACAGTACTTGAGTTTAGGCTTTCGGTTGGTCTTTCCTATGGGG
ATGAAAAGGTGTCGGGAATCGTATCTTTCCTCTCCAATCCTGTTG


Right flanking sequence: Indices 1245403 -- 1245902
CGCAGTTCAAGAATCAGCATCAGATGATGAATAGAAGGTACTTCAAGGGAATCCGTTAATTCAGA
AGGAAGGGAAGGCAACATGCCCGTAATGACCTATCTATCTTTCAAGTGACAAGATTCTAATTCTG
TGAGCTTGCTTATGTAAGCCTGCTTCTTAAAAGAAGCCTGCAAGCCCTCATGATCAACCCATCCG
CTCACCCAGTCATCAAGTTTTTTGGCCGGAGAAACGAGCGTATCATGCTCCTGATCGGGAGCCGG
ATTGGTATGAGATGCTGATCCCTGCTGCTGGAGTGGTGCCGAAGAGGAAGCTTCTGCCCCGCTCC
CCTCACCAAATGGGTTAAGTTGAGAAGAAGAGGCGTCCCACGGCTGTTGTTCCTGATTTCGAATC
GGGGCTGAATCAGGCGAGTAAGCTCTTTCCTACGCAGGGAAAACCATATTTACATAGGGCTTTTG
GCTTGGGTAGCGAGGAGAGCCTTAACAGCAAAAACAATAGACAAG



Found at i:1250817 original size:22 final size:22

Alignment explanation


    Indices: 1250792--1250836  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1250782 GCTATGCAAC

                                  
    1250792 TTTGCCTATAGGTTCAGCTCTT
          1 TTTGCCTATAGGTTCAGCTCTT

                                  
    1250814 TTTGCCTATAGGTTCAGCTCTT
          1 TTTGCCTATAGGTTCAGCTCTT

             
    1250836 T
          1 T

    1250837 CAGACAGTTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47


Consensus pattern (22 bp):   
TTTGCCTATAGGTTCAGCTCTT

Left flanking sequence: Indices 1250292 -- 1250791
TGAATATTTAACACCAATTGAGTATAGAATTGTAGGACTTTGAGCTTAGCTTAGAAGCCGGTTGA
CTCACTATTCTCTCATACTACTAAATGTTCAGTTCTTTCCCGTCTTGCAGTCAGAATCTAGAGGT
CTTGAAGAGCCTTTTTCATCTTTCATCTTGTGGACCATATATTAAATCAGCTGGTAGAAAGCGGT
GGTTAGCGCCTGTCGTAAAGGGATTTAAGTGGTTCTGAAAGAAGACCAGAATACCCAACCGATCT
CATCAATATCCGACTCAATAAATGGAATTAGTCATGATCGAAAAGAAAATACTTTTTCTAAATGA
ATCTCACCACAAACAGGGAAATAGCAGAAACTGAGTAGGTAGCTACTAGTAAACAAAACACATTG
GGACCTAGCTACATTTTCTAAGCTCGTTAGACTCTTTGTTCGCCTCGCCTATGGTATCAGCACCT
TCTGTTCTTTTAAGAATTCGTACTGTCTCTTCTAAGCTATGCAAC


Right flanking sequence: Indices 1250837 -- 1251336
CAGACAGTTCGCATAAAGCAATTGGTTATGAAAGAATGGAAACCCGTACTTAACTTTACGGAATA
GAAAGTCCTCATCTTCCATTTCGAGGAGTGAAACCGATTCAAAGGGAATCAAGTTCGTCGTTAGA
CAGTCTAGAAGAGATAAAGGTTAAGGCTAAGACATCAACCGAGAGAAAGTCCTCATACGAGATGA
GGGGAGGCAGACTGAACCTGAAAGCACCTTCATTATCGATTGATAGCTTTGGTAAATAGGTTCTT
CCCTCAGGGTTGAAGACAATTTAGTTGCTTGAGAAAAGTGATACGAATCGATAGCTCCTTAAATG
GAATCCCTATCCCTCTCTAAGACTGGCTAGGTTTCAAAGGCTTTAGCAGCAATCGCATAGCTTTA
CCTTTATCTGCTCGGGTCCGTACTAACGGAACATCGCTTTCACCCCCGAAATTCGAGGCTCGACA
ACAATCAAAATAGCTGGTCTAAGCAGCCGCATTAATTCCTTCATA



Found at i:1256580 original size:21 final size:21

Alignment explanation


    Indices: 1256554--1256595  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1256544 CCCATTCATT

                                 
    1256554 GGAGATAAAGGCTCTACAAGA
          1 GGAGATAAAGGCTCTACAAGA

                                 
    1256575 GGAGATAAAGGCTCTACAAGA
          1 GGAGATAAAGGCTCTACAAGA

    1256596 CCTCGTCCTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14


Consensus pattern (21 bp):   
GGAGATAAAGGCTCTACAAGA

Left flanking sequence: Indices 1256054 -- 1256553
GCTCTTTCATCCCCAAATTACTAAGACCTATTTCACGCCCAAAGCTATCAATCGAAAATGAAGTT
CAGGTTGTACATCCAAGGCTGATTATCTTACATTCCCGTAGCCCGACAGAAACCTTAGAGGCAAA
AGTCACTCCCCATCGCTCTAAACCTAGGCCGGGAGTCGAACACCGGGACTTTAAATACGAAATTG
ATTCTTTCTATTCACCCGGGTCAATGGGTTTCACTCTCCTTTGGCTTTCTTGAAGGCTGCCTCTG
GGGAATACCCCAACTGCCTTATCATACATGTCGGAATAGGCTCTTTCTTTGGGCGCTTTGATGGC
CAATAGGTGATCGGACTCTGGCGATTTAGCGAAGGTTATTCTGAAGTAAGAGGTATAAATCGATT
CTAGATCCCCAACTCAATCATCATCATTACTTTTTCGAATCCAAACGAGTAAGAAACTCAACTGG
AGAACAACAGATAAAAAGAACCCCACTCTATTCAACCCATTCATT


Right flanking sequence: Indices 1256596 -- 1257095
CCTCGTCCTTGTTCCAATACCCGAGAGAACTGCTAGAAAGGGTGACCTTACTAAACCTACCATGT
AATTAAGGGAGAGATTCCATTAAAGACCAACCACTAAAGCAATTGGTTACGCAAGTGATTGCTTT
TCAGACAGACCGGAAATATAGGGAAGAGATTGTTGCTTCCGAGGAATTGCTTCGAAAGAGCCCCT
ACGGATTAAGCCCCGGAGGAACCCTCCATAGATCATCTAATCGGACAGTTCACTATTCAATTCAC
TATTGAATAAGGAAACTCAAAAGCTTCCCAGTCCTATCCTACTACTGAAAAAATTGCTACTGTTG
AATGAGTTCCAGGGGCTATTCACAGAAAAAGAAGTAATGCTCAAGGAGCTGAGTCGTACAAATGA
GATATAGATTTCACGTAATCTGGGTAGGAAGAATCTTATGGAACTCTTCATTCAGCTCGTGACTC
AAGGCAAGCCTTACGTTTCGTTTCAGCATCATTCGTACTGAAAGT



Found at i:1257709 original size:20 final size:20

Alignment explanation


    Indices: 1257684--1257723  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

    1257674 ATCTGCCTTG

                                
    1257684 ACTTGATTCGGTAGTTTCGT
          1 ACTTGATTCGGTAGTTTCGT

                                
    1257704 ACTTGATTCGGTAGTTTCGT
          1 ACTTGATTCGGTAGTTTCGT

    1257724 TTAGTACGAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.15, C:0.15, G:0.25, T:0.45


Consensus pattern (20 bp):   
ACTTGATTCGGTAGTTTCGT

Left flanking sequence: Indices 1257184 -- 1257683
GGTATTATCAAGGCAATTTACGGTGGAAAAGGAAATGAAGCCTGATTTACTCAATCGCACAGCAA
GTGAGGGTAAAACAATGGAATAAGTCGACGACCATAGAACCCTGTTCAAAGATTTACCTCGCGTT
TACCATGTCTCCCGAGCAAGCTCCGTACATAGGAGAAGAATAGGCAGGCGAGTACGGGAGATTAA
GCTATTAAGCCCGAGCGTATAAAAGGTAGATCGCTGTATCTGCCTTGAGGTTTAATAAGGACTGG
GGTTTGAGTACTTCAGTTTAAGGATTAGGTGTTCGGGTCTTTTTCATATAATTTCACTAAATACG
GGTGAATTACCTTTCCTAAATAGAATAACCGCATTTGCATCCCATGGGAATTACCCTAACCACCT
GTTCCAAAGCGGTACAACAACCCATGACTTATTCTAAGAACCCGCGAGTAAGCAACTTTTGTAAA
GGCACCCGCACCCGTCTTTTTTGATTGATGTTCCGATCTGCCTTG


Right flanking sequence: Indices 1257724 -- 1258223
TTAGTACGAGATCGATGCTTTGGCCCTCTTTTTTGCAGATTCTTTCTTTTTCTTTGGCAGGGCTT
ATGACCAACAAGCAAGAATGATACGAGATACTTTGAACTGCTTTTGCTCGGCTTAAGGGTATGGT
TAATTTGCTACGGCTCTTGGGCCAAGGTCAACAGTCCTTATCTCAGGGTTTCAGCAGACAGCTTA
GTCCGAGTATTCGTACCTGAGATCGGGGCTATCACCATCACTATGAATCAAAGCTAAGTAGGCTG
ATCTGGAAGTAAAGGCACCAGTCGAATTTCGCCAACAACTAGCAATATAATCAGGTGCTTCAGCA
TGGGATAACCCCATGGCTTGAAACGGTTTTTTTGAAGCATCAACCATGGCAAATTAACAACCGAA
GCAAAATCCTACATTCCCATAACCGTAGCCAATCCCTAGCCCCGTTAACCGCCCTTTCTTTAGAG
CTAGAGGTTAGATACTTTTGATGGATGTTCTTCTTGTCGCAGGCA



Found at i:1260402 original size:30 final size:30

Alignment explanation


    Indices: 1260368--1260429  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

    1260358 CGCTTTCGCT

                                          
    1260368 CCTTCTCCTTACGGATCACCTATTTCATCC
          1 CCTTCTCCTTACGGATCACCTATTTCATCC

                                          
    1260398 CCTTCTCCTTACGGATCACCTATTTCATCC
          1 CCTTCTCCTTACGGATCACCTATTTCATCC

              
    1260428 CC
          1 CC

    1260430 ATAGTAAAGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.16, C:0.42, G:0.06, T:0.35


Consensus pattern (30 bp):   
CCTTCTCCTTACGGATCACCTATTTCATCC

Left flanking sequence: Indices 1259868 -- 1260367
GTCCACTCAAAGCATTCCTTTAATCCCTATTGGCCAGCAGCCTGCCTTGTAACTAGGAGCTGTAT
AAGATTCTTTACTCAACCTCGGGCTAAGAATAAAAGGTCTTACACTACTTTCTGGAATCTAGAAA
CCGAAAAGCAAGCACCATCAGAAGACGCTGAAAAACCTTATCCTATTCGATAGCTCGTTGAGGGC
ATCCCTCTTCCATCATACTCATGCTCGGAATCCTAATCCCCTAATGCCCTTACTCCAAGAAAGAG
ATAAATCGCTGGAATTGAGCAAGATTTTAAGCTTTGGCTCGGCTCTTGGATAAGGCTTTCATTTC
ACTTCCAGACCCATAAAAAACTAAACTCTCACGCTCAAGGTATTTTCCTGGATCCGGGTATCGAT
CTTGGGAATCTGTTTTCAACTCATATTCCGGTGCTCGAGTCTGAGATTCGGAGTACTACAAGTCA
ACTAGCGCCTTCTCATCAGCCTCTTCTACTAACAGCGCTTTCGCT


Right flanking sequence: Indices 1260430 -- 1260929
ATAGTAAAGACCAACCGAAATAACAACAAAAGGCTTTTTAGCAGTTCCTCTCGGGTACTACCCTA
CTTAAACCATAAACTAGAAAGTTGCCTATCCCCTTCGGCAACAGAAGCCCATCTTTCGGATGTCC
TACTTGCTAAAGCGGTTAGTGAATGAGGTATTGGATCATGAGTAAAGAAACCTATTGGATCATGA
GTAAAGAAACCTATGGTGGAGGTATCGCTGAAGAGTTCGATAACGCTTTCCCTGTAGAGTGCTAT
TCTAATCTATACCTATTCCCCACAAAAACAAATAAAGAGCCTATTCCGGCATTTAAAGGATGTTT
GGAGTTTTTCCATAAAATTCAGTTGATGGTTTAGATTTCAAGTCTGGGGAACCTTCGTCATTAGT
TTCATTCCCGGGAGAAAGTAATAGCTTTTCAATTCATTAAAAGAATTAGAAAGATTACCCACTCT
CCCTACTAGACTGAGATGGGAATAGCCGCAACGCTTCTCGATTAT



Found at i:1260620 original size:24 final size:24

Alignment explanation


    Indices: 1260588--1260638  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

    1260578 GTGAATGAGG

                                    
    1260588 TATTGGATCATGAGTAAAGAAACC
          1 TATTGGATCATGAGTAAAGAAACC

                                    
    1260612 TATTGGATCATGAGTAAAGAAACC
          1 TATTGGATCATGAGTAAAGAAACC

               
    1260636 TAT
          1 TAT

    1260639 GGTGGAGGTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27


Consensus pattern (24 bp):   
TATTGGATCATGAGTAAAGAAACC

Left flanking sequence: Indices 1260088 -- 1260587
CGGAATCCTAATCCCCTAATGCCCTTACTCCAAGAAAGAGATAAATCGCTGGAATTGAGCAAGAT
TTTAAGCTTTGGCTCGGCTCTTGGATAAGGCTTTCATTTCACTTCCAGACCCATAAAAAACTAAA
CTCTCACGCTCAAGGTATTTTCCTGGATCCGGGTATCGATCTTGGGAATCTGTTTTCAACTCATA
TTCCGGTGCTCGAGTCTGAGATTCGGAGTACTACAAGTCAACTAGCGCCTTCTCATCAGCCTCTT
CTACTAACAGCGCTTTCGCTCCTTCTCCTTACGGATCACCTATTTCATCCCCTTCTCCTTACGGA
TCACCTATTTCATCCCCATAGTAAAGACCAACCGAAATAACAACAAAAGGCTTTTTAGCAGTTCC
TCTCGGGTACTACCCTACTTAAACCATAAACTAGAAAGTTGCCTATCCCCTTCGGCAACAGAAGC
CCATCTTTCGGATGTCCTACTTGCTAAAGCGGTTAGTGAATGAGG


Right flanking sequence: Indices 1260639 -- 1261138
GGTGGAGGTATCGCTGAAGAGTTCGATAACGCTTTCCCTGTAGAGTGCTATTCTAATCTATACCT
ATTCCCCACAAAAACAAATAAAGAGCCTATTCCGGCATTTAAAGGATGTTTGGAGTTTTTCCATA
AAATTCAGTTGATGGTTTAGATTTCAAGTCTGGGGAACCTTCGTCATTAGTTTCATTCCCGGGAG
AAAGTAATAGCTTTTCAATTCATTAAAAGAATTAGAAAGATTACCCACTCTCCCTACTAGACTGA
GATGGGAATAGCCGCAACGCTTCTCGATTATTTAGGATTTCACTAGGAAAGGAAAAGGCGCTCAT
TAAAGGAGCTCTCCTACGCTTGCCCCCGTTTCGACAGCTAGAATTGCTTTACTTTTGAGCTGGTC
CTGCTGACTTCAATACCGCTGAGATGGTATACAAAAGAGGGATTTAAAACTTATTAAGGATCCAC
CAAGAGCTCAAGCTTGGTCACTCTTTTATATCTGCATTTCGTCCA



Found at i:1263176 original size:27 final size:27

Alignment explanation


    Indices: 1263138--1263191  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

    1263128 TTCTCTCGTT

                                       
    1263138 GTGAAGAAGTATGGTTCTTCCGTTGAC
          1 GTGAAGAAGTATGGTTCTTCCGTTGAC

                                       
    1263165 GTGAAGAAGTATGGTTCTTCCGTTGAC
          1 GTGAAGAAGTATGGTTCTTCCGTTGAC

    1263192 CGAGGTTTAG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33


Consensus pattern (27 bp):   
GTGAAGAAGTATGGTTCTTCCGTTGAC

Left flanking sequence: Indices 1262638 -- 1263137
TAGTCAACATGGTATAGGTATGGAATGCTCCTCTTGCTAGCCTTGCGTAAGATTTCTTCTCTTAT
TCTATTTCTAAAACAGCGCTACGTCATAACCAATGAAAGAGCTCTTCTTCAAAGGGGAATGGCTC
CTTTTTCTTTTCTTTTGGGAAGAGCGATCGTAAAGCACTACTCACTCATACATAAAATGTGGAAT
CTGCTCTTTTTAAGATCAGCTTTAGAGTTTCAAGAATAATCTAGTGCTTTTTCTTCGGCATATCG
CTTCGGAAGAGCTCACCTTCTCTATCTCTGGCTGGGGTTCTTCCCTTTGACCTCTAGTGCGCCTA
GCGTTCTCGTCTGTTGGAAGATATGCTGGCTAAGGAGTTGCGGTTGCTTACATTATATTATTCGT
ATCGATTCTTTGATTCGAAGAGCTCGCACCCGTACCTTTATTAGGGGCAAGAGTCTCCGGTTCAT
AAAGCAGATTAACAAAAAGGGATTCTCGCTAGGAGTTCTCTCGTT


Right flanking sequence: Indices 1263192 -- 1263691
CGAGGTTTAGGACCTGGGGATTTCTCATCTCCAGCCGTTGCCTTCATCTTTCCCATTATCTTACC
TCTGTCTGGTTGGTTAATGATGGGCTTTCGGGGCTTACTTGTTGTTCTTTCTATAAGATAGCAAA
AGAATCTATCCCAAACCGAAAGAGTTATTCTCTGAAGTAGCTAAGGCTAACCTAGTCCAATAATT
TATACCCGAGATAACTGCTAGTTCATTTACCGCTCTTAACCTTATACGCTGGTGTGCTATAGATA
GACTCCCTTGTTTAGCTAGATAAATGGGTAGACGCACACTGAAGACAAGATGATGGGAAGGCAGA
GTTATTTCTGCCCAGGGAAGGAGTATTCAGAGTGGTTCTTTGATTGGGTGGAAGGCGAAGAAGGC
CTCCCTCCGGGGGGGCCCGAAGTGCTTTATGAACAGGATTTGACTTTCTTGTGTATGACGTGGGG
GTTAAAAGTGGAATCTCTTCTATGAACTTAACCCTAATTGTAAGG



Found at i:1264260 original size:28 final size:28

Alignment explanation


    Indices: 1264220--1264275  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

    1264210 GGGAGGACAA

                                        
    1264220 AGCAAAGCAAGCAATGGAGCAATGGAGG
          1 AGCAAAGCAAGCAATGGAGCAATGGAGG

                                        
    1264248 AGCAAAGCAAGCAATGGAGCAATGGAGG
          1 AGCAAAGCAAGCAATGGAGCAATGGAGG

    1264276 CCCAAGCACT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.43, C:0.14, G:0.36, T:0.07


Consensus pattern (28 bp):   
AGCAAAGCAAGCAATGGAGCAATGGAGG

Left flanking sequence: Indices 1263720 -- 1264219
TTTATTTGATTGTTGTACTGTTTATTATCTCAGTGGCTTTTAAACCGCAGTTTTAGGGTTTTATT
TTTATTGTTTATTCTGTTAGTTCTATTATAACCCTAAGCCTAAGCAAGAAAGCAGAAGGGTTCGC
TTTTCTGAAGTGGAGTAAGGGTGTCATTGGCGAATAGAAGTAGGAAGGGAAATCCTTATGTAACT
CCAATCCTGGCTCGAGAGCGGGTTAACGGATTGAATCGGACTCTTTCTTTCGAGTGAGTGAATGA
TTTATGAAAGTTCATAGAATCTGATATAAAGTCTTCCCATGGAAAAGCCACTGATGAGAGGATGG
AATAGAACTCCCAATGTATGTAAAGTAAGTAGGCCTGAAAGCAATCTCAGGTAGAATGGCTAGTT
TGAAAGCCTTTAAAGACAATCGATTATCGGATTTCACCAACCCAACCAATCAAAGCAGAAGTTCT
AATTAGTGCCGCTGCCAATATGCCATTTCAGCCCTGGGAGGACAA


Right flanking sequence: Indices 1264276 -- 1264775
CCCAAGCACTAGAGGCCCCCCTAGAACAATCCCAGGGTCATGCAAATGCCTGGGTCTCACAATCT
TTTAAAAAGGAACCATTGTAGTGCGAAAAAAACGAGCGTTTGGGCGGTCTTACGATGAAATCTTA
CCCATGATGCCTCGAATCATGATATTTTTAAATAGAATCTGGGTAGTTGGTGAAATCCTCGCTTC
AAAATGCTTGTTTTGAGACTACTTTAAACAAAACGGTCATTGTTCTCATTCCTAAAGTTGAGGGA
CCTGAGCGAATCAGTCAATTTCGACCGATTAACTTATGTAAAGTTCCTATGAAACTCATCACCAA
GGTCCCTGTGAATCCACTTCGTACTTTCTTAGGTAAACTGGTGGGGAAATCAAAATCAAGCTTCA
TTCCTGGACCCAATACTACTGACAATATTATTGTGGTACAAGAGGCTATTCATACTATGGGAACA
ATGAAAAGAACTAGAGGGGCTCTTGCGATTAAAATCGACTAAGGC



Found at i:1267795 original size:28 final size:28

Alignment explanation


    Indices: 1267763--1267817  Score: 101
    Period size: 28  Copynumber: 2.0  Consensus size: 28

    1267753 CTTAACCGTG

                                        
    1267763 CCCTCCTATCGTACCTATTTCCCCTTTT
          1 CCCTCCTATCGTACCTATTTCCCCTTTT

                     *                 
    1267791 CCCTCCTATGGTACCTATTTCCCCTTT
          1 CCCTCCTATCGTACCTATTTCCCCTTT

    1267818 CCTTCAGTTA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.11, C:0.42, G:0.05, T:0.42


Consensus pattern (28 bp):   
CCCTCCTATCGTACCTATTTCCCCTTTT

Left flanking sequence: Indices 1267263 -- 1267762
CTTGTCTAAGTTCCTCGGCCATGGCTTCAACCTGATCTTCTGGCAGATCGGCCATGTCTGTAGGG
CCCTAGCAGGACCCTGAGCACCTCAGCCTGTGTCTGTCCTGTCTCGGCGTACTCCATCAGGTCTC
TGTCTAGCACTTCTTTTATTTCTTCAATTCTTTTTTCTCTAGCCTTCTTTCGCTGCAGTCGACGG
CGTATAGTCCTCTTGTTTTGTTTTTTGGGGAACTTTCTATGTCTGACGACCTCCCACTGTCTGGA
AGCAGGTCGATCCGGTTTCTTGACCATTCTGGACTAAGTTCGTTTAGAGTAGACACGCCCCGACT
AAATTGAACTTCTTTGCATGGAAGCTTATGAGGCATCTCAGTGGACGCTTTTATTCAGAAGATAG
GAATTCGGCTTGCTCACTTAGAATGAGGATCAATAATAATAATGAGCGTAAAGGCTTTACACAAG
ACCACAGAGCGAGAGAGAGAGCCTTCGCTTACCTGCTTAACCGTG


Right flanking sequence: Indices 1267818 -- 1268317
CCTTCAGTTACATTTTTTCTCAGTTCTGCTTCCAACTACCGATGTGAGAAGGCTTGGACGTATAG
CAAGATTAAATAAGAGGTATGGCATACGGGAATGGTATATGAAATGCAAAGTTCCCGATTTCTAA
TTCGTTTTTCTAGTTTTTCCAGAACCCCACGTCCGAAAGCATAAAAGCGGATACGATCACATTAG
AGAAGTCTCACTGGCCTTTGCTAGTCTTATGCCATGCGTGCCTTACGAACCGACCCTTTCTCTTC
GACGAATAGCACTCGAAAATCCTAGAAATCTATACACATGTCAACTATCAACACACAGGCTTTAC
GCTTAAGCTATGTTATACCTTCCTTCTCTGCGAACAGAAAGAATGTAGCTTCCTTTACAAAGTAT
ACTGAAGCAGGCTTAGGGACGAATAAGGGTCCGTACTATGTCCGAGGCACCTCAAGGCACATTGT
CCGCCCGGATAAATATCGTAAAGTGGGCTCGCTCTACAATGGCAA



Found at i:1272358 original size:31 final size:31

Alignment explanation


    Indices: 1272320--1272381  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

    1272310 CGAGAGAGTT

                                           
    1272320 CATGATTGATGCTCCCTCTAGAATCGCTTTC
          1 CATGATTGATGCTCCCTCTAGAATCGCTTTC

                                           
    1272351 CATGATTGATGCTCCCTCTAGAATCGCTTTC
          1 CATGATTGATGCTCCCTCTAGAATCGCTTTC

    1272382 AAAGCGGGGA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35


Consensus pattern (31 bp):   
CATGATTGATGCTCCCTCTAGAATCGCTTTC

Left flanking sequence: Indices 1271820 -- 1272319
AGACTCTCGGGCCTATAGGTAGACACCACCTTTCTTATTCGATGGATTCCCTTGCCTTTTTTCGA
GTACCTGATAAACTGAATCTGATAAGGGGGATCCACTACCAGAAGAAAAAGACTTGCACTCCCAA
CTACTTACCAAAGCGAGAAAGCAGAGGTTAAAGCCTTATCGAACTCTGAAACCGAAGCGTCATCC
TTTTTTCAAGCTTGAGTAAAAGTGAAGGCGTTTTGTCTCTTTACGAAGGGTACGCAGGAGATTCG
ATGTAAGGGAGGATGGATGTAGCTGCTATTGCTATGGCTGGGAAATAAATAACATACATAAATAT
CATTAACGATTGCTAGCGAAGTCTATCTGTCAGAGTGATCTTAGACCATTGAACTTCCTCCCCCA
CTGCTTACATTATACGGTCGTGAGTGAAAAGAAAACATATGTGGTTCTACACCCCCGTTCGAGAG
ACTGGTAAATGTGTTTCCGTTGCTAGCCTTTCTTTCGAGAGAGTT


Right flanking sequence: Indices 1272382 -- 1272881
AAAGCGGGGATTTATTAAGCTCAGAAGGGGGAGTTTGCTTTGGTTGTTTTTACGCCTAGACTCCT
GAACAGCTAGAAATCAGATTAAAGAAAGGGATTGATCTTACGTACGGGTCTTGCTTCAGGCTTCC
CCATCCTCGTAATCCAGAAAGCGAAAAGCAAACAACAAGAAAAGCTAGTTCCTTGAGAAAAGGGA
AGCGAAGATAGTCCTTGTAATACGGCATTAGAGTTGGTAGAAAGCCTTAACTTCCTCGGAAAGTA
ACCCATCGGTGAATCAGAGGGGAGAGATCCTTAACTGGAGACTAGACTGATGGAGAGTACCTATA
AAAGGCTTAGCTGACACAAGCCCTATACCAACAAAGAACCTATCGCTCGTGCACTGAAAGAAAGC
ACCTACGGAACCCCCGGAATATGTGCTTCCTTTCCACCCGCGTATAAGTTCTTATCCTTTTCTTT
GAGCTCTACTCTAGGGATAGCAGTTATATTCAAAAGGGATAAAGA



Found at i:1287347 original size:19 final size:19

Alignment explanation


    Indices: 1287323--1287360  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

    1287313 CACCGGCTAC

                               
    1287323 ATAAAGAAGACGCTATTCT
          1 ATAAAGAAGACGCTATTCT

                               
    1287342 ATAAAGAAGACGCTATTCT
          1 ATAAAGAAGACGCTATTCT

    1287361 GTCTGTCATG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26


Consensus pattern (19 bp):   
ATAAAGAAGACGCTATTCT

Left flanking sequence: Indices 1286823 -- 1287322
TTGGTCAATTCATGAGAATCTTTTTCTCTCAATGGAAGTCTTATATTATACAAGCCTGTCACCAC
TTCTCTCAAAAACTACTAACAGGCCCATTCTTCTACTATAGATAGAGAAGTAAGTGAAAACGAAA
TCAGAAAGAGAAGAAGGTAAAACGGGGATAGCAGGGTTAGTGGTATCGGACTTTCAATCTCAATA
AATAGGAGGGTTAGCCTTTCTGAATCGGCTTAAGCATTTGAATTTGAACTCGCAATTGAAGAAAT
CCCTTCCTTGTCAAGACCAGGGATCGATGCAACTAGCCTAGCCTTCGTGCCAGGGTCTTTCTTTA
GAGTTTCACCTTTAGGCGAAGCGAACATGCAAACGATGCCCAAGAGCAAAGAACCGGGAGATCAA
GATGAATCAGAATAGGCGAACAGAGAAGGACCGATAGATGGACTTTCTTTACGACTTACTGGTGA
AATAAATAGCCTTTCTTCCTTAATAGGCACCGATGCACCGGCTAC


Right flanking sequence: Indices 1287361 -- 1287860
GTCTGTCATGTCATGGTCTAAACCAATACAGGAACTGCAGTGTCGAGCTAGGCCTTTGCTCTTGT
CTTTTCTTACTTTCGAGTGAGTGAGTCGTACGCAACTCTGTATACGAAGGAAAGCTCTTCTCGGC
TCAGCTAAAGCCTCTTTGCCTTGCCCTAAGGGAGTGGAGGGCTGAAGTGTAGATGCCGGACGTTG
ATTCCGACGATGAGGTTCATCTATTGAAGCCGTTACTTTCGAAAGTTTGCATTGGATACGATGTC
TTTCGAGTGGAATATGAAGCCCTTCATACTGTGTCTTTTCAATGTGGGGTGCTTGGACATAGGTC
TGAATTTTGTCCCATCAGACAGGAGGTTGGTACGGGGACTCCTACGGCTGCTAATCCGGCACAGC
CTAGTCCGCCTGTGATCAATGGGGAGGCCTTGGCGATGGTTACGTCGGCTGCAGCTTCTTCTCTT
GATGGTGGCTCTAAAAATGACTCCTCCTTCGGACCGTGGTTATTA



Found at i:1289515 original size:22 final size:22

Alignment explanation


    Indices: 1289487--1289531  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

    1289477 AACTTCCCAC

                                  
    1289487 ATTGAAAGCATATTAGATGAAT
          1 ATTGAAAGCATATTAGATGAAT

                           *      
    1289509 ATTGAAAGCATATTATATGAAT
          1 ATTGAAAGCATATTAGATGAAT

             
    1289531 A
          1 A

    1289532 CCTTCATACT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.47, C:0.04, G:0.16, T:0.33


Consensus pattern (22 bp):   
ATTGAAAGCATATTAGATGAAT

Left flanking sequence: Indices 1288987 -- 1289486
TCAAGAATTCAGTCGACTACCAAAGAAGGGTACCCTATCAAATGCATATCCCTGCCCTGTTGTAG
TTGGAAGGGGAACATCCAGCCAGCACTAAAGAAAGTCCTGCTTTACCAAACGAAGGAGCCAAGAG
AGACCAAGAGCCTGGTGGAGTTACGACTATCGCTAGCGGTGATGCCAAGCCCTTCAACAGCGGCG
AAAGCGAAAGGGATGTAGCTCTTTCTTGAGAACGGAATAAATAGGGTATGGTATATCTCTGAGTC
TAATTAATAGTAGTAGTGGTCTTACCAACCTATTCACATTCTTCAAAGACGGGAAAACGCCAAGC
AATCTAAGAAGCACAAGGCTCGGAAAGAGCTTCTCCTTCAAGTAAGGAATGAAAATCCATGGACC
AAAGGAATCCCCGTCAACTTATTGAGCATTTCCATCTTTGTTCCCAACCTGAGGTTCTTGTGGCG
TCACCAACGAAGGGCAAGTATCTTTTCTATGCCCAAACTTCCCAC


Right flanking sequence: Indices 1289532 -- 1290031
CCTTCATACTCCACAACTTGTATGTAATCATCAAGGGCTCCTCTAGCAGCTATAGGTTTTGTGAG
ATCTAATTCTACACATACTCTTGCGAAACTCGCTCTACCCTCAACTGCCGTTGTTTTGTCAACAC
GAATCACTCTACCAACTTTACCTGCCATTGGTATAAGAACTCTACTCTCATAGAATTCCAATGGT
AGACATGTAAATCTAAGCCAAGCAATGATCTTGTTGATGGAGTCTGATGACAGAAGAAAGAAAGC
CCCTGATATCGAGATGAATGAATCGGAAGTTGATGAGACCCAGTTCCCGTACAAGGGGAATATTA
TTGTTCTAAAGTAGACCGAAAGCTAAGCATTTTAATTTGAGCTCTCCTTTGAGTAAGAAGTAATC
GGGCTTACCGAAGTTGTTTAAAGGAATCTATTCTAGAAAGACAAATCACCCGCCTCGTCCGGTCA
AGCTGCTCCTCTCTCTGCCCTTCACTTGGATGAAGGACCTAATTA



Found at i:1291575 original size:25 final size:25

Alignment explanation


    Indices: 1291542--1291592  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

    1291532 TAATATACAT

                                 *   
    1291542 AAAAAAGATGTTCTTTCTTTTGTCA
          1 AAAAAAGATGTTCTTTCTTTTCTCA

                                     
    1291567 AAAAAAGATGTTCTTTCTTTTCTCA
          1 AAAAAAGATGTTCTTTCTTTTCTCA

             
    1291592 A
          1 A

    1291593 CTGTTTTAAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43


Consensus pattern (25 bp):   
AAAAAAGATGTTCTTTCTTTTCTCA

Left flanking sequence: Indices 1291042 -- 1291541
CTATCGGTCCTCTGAGCCTTATACTCCGGATCCTTCAGCGCCTAGCGGAGAATATATATACTATT
TGCATTGAGCTGTCAAAGCAACCATTTGAAACGATTTATTAGATAGAGTTGCCTATAAGAAATCC
CGAGAAAAAAACGTATAATGCAGATGAGAAAAATGCCGAGTCTAACTCGGTCAAGTCCCTATTTA
TGAATAATTTTTCGTGATAGAAGGTTCCATTCCAATCAGCTACTATTCATAATGCCCCTTACTTA
GTCCCCTTTCTCATTGAGAAAAGAGAGAACATAAGACTTTGTCCTCACTAAATGCCTTCAACCTA
CTTCGTCCACGTTACTTCGATTCACACTTTAAGCGCCTACCTTATTTAATCACCTCACTGAGTAC
ATTATTATAGGTTCAGATTCCGCTTCACCTCAAGGCGAACAGTACAGAGGATGAGCAAGGACCCG
ACCGAGCATCGTATGTTGACGCAGGAGTGATCCTATAATATACAT


Right flanking sequence: Indices 1291593 -- 1292092
CTGTTTTAAATAGAGTCAGGCATTTACCTAATTCGACGATGGAGAGAATCTCGTCGTCTGTTCAC
GAATCGGCTACAATTAGCTGTCGTAAGGCCTCTCTCTTATCAATGCTTGTAATAACTCTTTCTAA
AAGCTTGCCAGTAGTATGCTTTATGTCTAAATGAGCCTTCTTAGTTCTTGTTTGCAAGAAAAGTA
GTCTGACTCAAGAAAGGTAGTCTGACTCATTGTGGGAATTCTGTTGTTTTCGGGGTTGAAGGCGT
ATGAACTGGACCGTGCGGACAGAGCGTAGGTTAGAAGCCGTAGGATCACGGGTGGATCACAGCTC
TGTGAAAAGCCGAAGGGTGCTGGCAAGATACCTCTCTTCGACAGCAATAGATTCTGAAGCGGTCA
CAAAGAGAAAGGCTTGAATGGAACTCTATGAGACTGAGCTTAGTAGCCACAATGTAAAGAGAGGC
CATGTAAACGTGGAATATTGATTTCCCAGATGAACTGACCAGATT



Found at i:1291801 original size:19 final size:19

Alignment explanation


    Indices: 1291777--1291816  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

    1291767 TTCTTGTTTG

                               
    1291777 CAAGAAAAGTAGTCTGACT
          1 CAAGAAAAGTAGTCTGACT

                   *           
    1291796 CAAGAAAGGTAGTCTGACT
          1 CAAGAAAAGTAGTCTGACT

              
    1291815 CA
          1 CA

    1291817 TTGTGGGAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20


Consensus pattern (19 bp):   
CAAGAAAAGTAGTCTGACT

Left flanking sequence: Indices 1291277 -- 1291776
TACTATTCATAATGCCCCTTACTTAGTCCCCTTTCTCATTGAGAAAAGAGAGAACATAAGACTTT
GTCCTCACTAAATGCCTTCAACCTACTTCGTCCACGTTACTTCGATTCACACTTTAAGCGCCTAC
CTTATTTAATCACCTCACTGAGTACATTATTATAGGTTCAGATTCCGCTTCACCTCAAGGCGAAC
AGTACAGAGGATGAGCAAGGACCCGACCGAGCATCGTATGTTGACGCAGGAGTGATCCTATAATA
TACATAAAAAAGATGTTCTTTCTTTTGTCAAAAAAAGATGTTCTTTCTTTTCTCAACTGTTTTAA
ATAGAGTCAGGCATTTACCTAATTCGACGATGGAGAGAATCTCGTCGTCTGTTCACGAATCGGCT
ACAATTAGCTGTCGTAAGGCCTCTCTCTTATCAATGCTTGTAATAACTCTTTCTAAAAGCTTGCC
AGTAGTATGCTTTATGTCTAAATGAGCCTTCTTAGTTCTTGTTTG


Right flanking sequence: Indices 1291817 -- 1292316
TTGTGGGAATTCTGTTGTTTTCGGGGTTGAAGGCGTATGAACTGGACCGTGCGGACAGAGCGTAG
GTTAGAAGCCGTAGGATCACGGGTGGATCACAGCTCTGTGAAAAGCCGAAGGGTGCTGGCAAGAT
ACCTCTCTTCGACAGCAATAGATTCTGAAGCGGTCACAAAGAGAAAGGCTTGAATGGAACTCTAT
GAGACTGAGCTTAGTAGCCACAATGTAAAGAGAGGCCATGTAAACGTGGAATATTGATTTCCCAG
ATGAACTGACCAGATTCACTGAAATCCTAAATCGAGCAGCGGATTCTATAGCAGTCACAGCGTAT
CATTTCTTGGCCCCTTACCTTGTGCCTATTCCATGTCCATGTGCTTTCCCCCCTTGCCCCTTTGT
AAAGGCACCCAAGAGAAAGTCCTATTATTCATTCTATGGGATGCAAGCAGGTAATTCTTCATATT
AGATTCCGGAGTTTGGGATTAAATCCAATTCAAATAATATAAGAG



Found at i:1302262 original size:23 final size:22

Alignment explanation


    Indices: 1302232--1302277  Score: 74
    Period size: 23  Copynumber: 2.0  Consensus size: 22

    1302222 AAGGTTTCAG

                         *        
    1302232 TTTTATTCTTAAATTATCTTTT
          1 TTTTATTCTTAAACTATCTTTT

                                   
    1302254 TTTTCATTCTTAAACTATCTTTT
          1 TTTT-ATTCTTAAACTATCTTTT

             
    1302277 T
          1 T

    1302278 GAAGCAGATA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  22    4  0.18
  23   18  0.82

ACGTcount: A:0.22, C:0.13, G:0.00, T:0.65


Consensus pattern (22 bp):   
TTTTATTCTTAAACTATCTTTT

Left flanking sequence: Indices 1301732 -- 1302231
CCTCGCTTTAAGTCGCTTTTATAGATAGGGGAAGAATGTGGCAACAAATCCCATCCTCTGGATAG
GGTCCTCCTTAGTTGCCCTTGAAAGGAATAGCCGTTGTAGCGAAGCAGCTTTGAGGACAGGTAAG
AAGTCGGTGAGCCGCGTATCAGCGAAGGTAACGGGGAGATAGGCGAAGAAGTTAATCAGATGGCC
GCCCAAATCGCCTCAGTCTTCACTGCTTACTACCATCTGTTAAGAATCAGCCCGGTATCGTTCAG
TACCATCCTTAATAGGATGTTTTCCTAAAGGGATGCATAAGGATCCCGTTGATCATATAATCCTC
GATCCTATAGTATGAGAGTAACTCTAGCTAAAACCCACAGTTGGCACCCTAAAAAGTGAATATAC
ATCTCCTTGCATTCACCTCTAGCTGGGGATTGTGTCAAACTCTCTAATGCACATCGAAGGCATCT
TCTTTGCATATTTCTTCCCTCCCGACCGAAGAAAGAAGGTTTCAG


Right flanking sequence: Indices 1302278 -- 1302777
GAAGCAGATAGTTCACAGTTCTTTTAGTTATTCTATCTAGAGATTGTCAAAGCAAACTCATGTTT
ATATTCCATTTTCATTACGATGATGTATCACGTCAAGATCCGTTGCTCAAACCGAATCACGCCAA
CGTTATGGAAGTTACTGGATTATGTGAAATAAGAGTAGTCAAAAAGGAACCTTATAAATTAATAA
TAAAAAATGGGAAATTGGCTATGGAAATTCCGTTCGGTCAGAAATTCATACAGACAGAAAAGGGT
TCTACAGGAAAGTCCTTTCAATCCAATCCATTTGAGGGTAAAGAAAAAGCATATGTTAGTGACCT
GGCACGACAAAGCACGCTCCGAGGGCATGGAATATCTAATTCTTTGGTAAAAATATTAACCATAA
TGTCTCTAGTAATGTCTCTATTAGATTCTACCTTCGAAATACGGGAAAACTCCATTCAATTATCT
ATAGAAACGGAGTTTTGCGAATTATCCCCAGAACTGGTAGAACAT



Found at i:1304157 original size:19 final size:19

Alignment explanation


    Indices: 1304135--1304191  Score: 105
    Period size: 19  Copynumber: 3.0  Consensus size: 19

    1304125 TAAAATCCTT

                               
    1304135 GCCTTGAACTTTTACTGAA
          1 GCCTTGAACTTTTACTGAA

                               
    1304154 GCCTTGAACTTTTACTGAA
          1 GCCTTGAACTTTTACTGAA

                         *     
    1304173 GCCTTGAACTTTTTCTGAA
          1 GCCTTGAACTTTTACTGAA

    1304192 CCAGAACGGG


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  19   37  1.00

ACGTcount: A:0.25, C:0.21, G:0.16, T:0.39


Consensus pattern (19 bp):   
GCCTTGAACTTTTACTGAA

Left flanking sequence: Indices 1303635 -- 1304134
ACGGGGGGGTACCGCATTGGGCAGAAGACGATCCAAAAAGCGAAGGCTCGCCCAGCTCAAGGAAG
GAGCTTTGGAAGCTCACCTTATTATTAGAGAAAGAGGAAAAGGGGGTGAGATAGGCGACAGGGAG
AGATCTTACAAGCCGGCCAGGCCGCGAGGAATCAAGAGATCTTTTCCGGTGCTGACTTGGATCTC
GGGTGACGGAATAAGGCGGATAGAAGCGACGAGCAGTCGCGGTCGAAGCTTGGCTATAGCCCATA
GACTAGCAGTAAGCTTGACTACAGCGAAGCGCTTACCAAGCGCGAAGAAAAGAAAAGGGAATTCG
CCACTTGAGCCGCATGCGGGGGAACTCGCACGTGCGGTTCTTAGGGGGGCTAGTAGGAGCCGTCC
TATCCCAATCCCAATAGCGTATATTTGGAGCTCAATATGAAATTCTATTTTCTTGCAAGACCCGT
TCGGATAAGGAAAAACTCCAGAGATTGCTTTGAGATAAAATCCTT


Right flanking sequence: Indices 1304192 -- 1304691
CCAGAACGGGGGGTTAGAGGAAAAGGGGATCAAGACGGCCCATACATAAAGTGAGGGATTTACGG
ACCTTACCCCATCACTCCCCCTTTTTCACTAAAGAAGCCCCGACCACCTAAGGGCCCCTCTCTGA
TAAAGAAAGGAAGGAATCAGAATCCTCAATCTTATGACAAATCCGGTCCGATGGCTGTTCTCCAC
TAACCACAAGGATATAGGCACTCTCTATTTTATCTTCGGTGCCATTGCTGGAGTGATGGGTACAT
GCTTCTCAGTATTGATTCGTATGGAATTAGCACGACCCGGCGATCAAATTCTTGGTGGAAATCAT
CAACTTTATAATGTTTTAATAACGGCTCACGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGC
GATGATAGGTGGATCTGGTAATTGGTTTGTTCCCATTCTCATAGGGGCACCTGACATGGCATTTC
CGAGATTAAATAATATTTCATTCTGGTTGTTGCCACCAAGTCTAT




Done.