Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KT894205
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1829341
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Warning! 14 characters in sequence are not A, C, G, or T
File 5 of 5
Found at i:1733082 original size:20 final size:20
Alignment explanation
Indices: 1733036--1733075 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1733026 TATTGACAAA
1733036 AAAGAAAAGAGATAACCTAC
1 AAAGAAAAGAGATAACCTAC
1733056 AAAGAAAAGAGATAACCTAC
1 AAAGAAAAGAGATAACCTAC
1733076 TTAGAAAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.15, G:0.15, T:0.10
Consensus pattern (20 bp):
AAAGAAAAGAGATAACCTAC
Left flanking sequence: Indices 1732536 -- 1733035
CGAGGCTACGACCACTCCCTCAAAGAGCCCAAGATTACGTAGAATAAAAGACTGATGCAGGCGGA
GTTGAAAGTCCTTTGACCGGCTCTGCCTTTAGCCCCAACGGGCGATAGCTTCCGGTTCTAGAATT
GATAGAGGCCCTAATTCCCGGACTGACTTCAGGAAAGAAAGTTATGACCTACCAAAGGCTCTGAC
AAGACCTTCTCTACAGCACCAAACCTACCCTTAATTTGCCTTTCCCTTTCACCAGAGCTAAAAGG
TAAACTTCCTCGATCTTTAGAAGATCCTTCCCAATCTCTTTAGACTGAGACTGTACTCGTGGGAG
GAAAGGAACTGACATATCAGATCTTGCCCTCTTTGCTGCTAGTGAAAGAAGCTGTGATCGATTAC
TTGAGTTGGTTTGAATACCCGCTGACTAAACTAAGGATAGGGTACTGAGGCAGTGAAAGAACTGA
CACTACCCACTGTAAAGAGAAGCTCTCTATTGCTCTATTGACAAA
Right flanking sequence: Indices 1733076 -- 1733575
TTAGAAAGCCTTGCCCTCTCCCGCGAGCATTCCATTCATGAAAGCCTTACCCGAGAAAGAGACAA
GTAGTTCTACTAAGCGAAAGGAAAGGGAAGAAGTATGAAATGCAGAGATGAACCTGGAGGAGATG
GATGATAGATTTTTCCGTTGAGGAGATGGATGATAGATTTTTCCGTTGGTGTCAGCCGTTGGAGC
GGTGGCGGCTGCGAATGTAGTTAGTTGAGTTGGTGGGGTTAGTTATGATACTATAGGAGCTGATA
CATCGTTCATGGGATTACCAGAGCAGAAAGGCGTAGTCAATGGATGTGTTAATAAATAATAAAAG
TATAAGTGATTGTGTAGATGAGTATGAAATGGTTACCTGATCTTCTCTGTCTGCCATACGATGTT
AGTTAATGCTTGCCTGTTATCGTGGTGACCTGTTGTGGGTCTTTGATGTGGGGATATTAGGCTGT
GGTATGTGTAGCTATGTGACCTTTGAGTGTTCACTCAGGTGGTGT
Found at i:1733229 original size:28 final size:28
Alignment explanation
Indices: 1733197--1733253 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
1733187 GATGAACCTG
1733197 GAGGAGATGGATGATAGATTTTTCCGTT
1 GAGGAGATGGATGATAGATTTTTCCGTT
1733225 GAGGAGATGGATGATAGATTTTTCCGTT
1 GAGGAGATGGATGATAGATTTTTCCGTT
1733253 G
1 G
1733254 GTGTCAGCCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.07, G:0.33, T:0.35
Consensus pattern (28 bp):
GAGGAGATGGATGATAGATTTTTCCGTT
Left flanking sequence: Indices 1732697 -- 1733196
GGAAAGAAAGTTATGACCTACCAAAGGCTCTGACAAGACCTTCTCTACAGCACCAAACCTACCCT
TAATTTGCCTTTCCCTTTCACCAGAGCTAAAAGGTAAACTTCCTCGATCTTTAGAAGATCCTTCC
CAATCTCTTTAGACTGAGACTGTACTCGTGGGAGGAAAGGAACTGACATATCAGATCTTGCCCTC
TTTGCTGCTAGTGAAAGAAGCTGTGATCGATTACTTGAGTTGGTTTGAATACCCGCTGACTAAAC
TAAGGATAGGGTACTGAGGCAGTGAAAGAACTGACACTACCCACTGTAAAGAGAAGCTCTCTATT
GCTCTATTGACAAAAAAGAAAAGAGATAACCTACAAAGAAAAGAGATAACCTACTTAGAAAGCCT
TGCCCTCTCCCGCGAGCATTCCATTCATGAAAGCCTTACCCGAGAAAGAGACAAGTAGTTCTACT
AAGCGAAAGGAAAGGGAAGAAGTATGAAATGCAGAGATGAACCTG
Right flanking sequence: Indices 1733254 -- 1733753
GTGTCAGCCGTTGGAGCGGTGGCGGCTGCGAATGTAGTTAGTTGAGTTGGTGGGGTTAGTTATGA
TACTATAGGAGCTGATACATCGTTCATGGGATTACCAGAGCAGAAAGGCGTAGTCAATGGATGTG
TTAATAAATAATAAAAGTATAAGTGATTGTGTAGATGAGTATGAAATGGTTACCTGATCTTCTCT
GTCTGCCATACGATGTTAGTTAATGCTTGCCTGTTATCGTGGTGACCTGTTGTGGGTCTTTGATG
TGGGGATATTAGGCTGTGGTATGTGTAGCTATGTGACCTTTGAGTGTTCACTCAGGTGGTGTAGT
TATATAGCTAACTTATTTTGGTTGTGTGTGGCTAAGTGGGTTTTCTAATGGGTTGTACAGGGGAA
TATTTCTGGTAAAGTCATGATGCAGCTTTGTAGGGTGTCCATGGTCTAGCAATCGGTGGGACTCA
GTATTTGAAATAGTGGGTGATGAATGAGGCCGGTTTTAGCAGGAA
Found at i:1739283 original size:23 final size:23
Alignment explanation
Indices: 1739257--1739302 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1739247 GTCATAGTGT
1739257 GAACTGAACTCCTTCAATATCGG
1 GAACTGAACTCCTTCAATATCGG
1739280 GAACTGAACTCCTTCAATATCGG
1 GAACTGAACTCCTTCAATATCGG
1739303 ACTAAGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (23 bp):
GAACTGAACTCCTTCAATATCGG
Left flanking sequence: Indices 1738757 -- 1739256
CAAAGAAATCAGTCAAGATTGCGGAAAAACAAAAAAGAAAGAGTTTTCATCTGATACCATGACAG
AAAGGAAGAATTGAAGAAAGAGAAAGCTAAAATTCTTATTACTGTAATCAATTGATTTATATACA
AGAGGGGATAGAGTTAACCTTTCAAGGTTAGTTAACTCTTAAACTAACAGCTAACTACTTACTTA
ATTAATATCTAACTAACATAATATATAACTATATATTAACAGTATTATTAACAAAGAGGCTGACT
ACATTTCCCGAGAGGCGAATCAGAAAGATTATTCTAAAAAATGACCCGCGCTAGGCATCTGATCT
TTTTAAGAATTTCCAGTGTTAAACATATGTATGCAGTTGCCATTTCTTCGTTGGGCCTTCAAGGT
GCACAGACACCATACCTGATTGCTTTGATCGAAGCTTAAACAGGGCCAGTGCTATCAGAGTGCTT
TACTTCAGGTCGAGCGGTTCCACTCCTACCTCCCAGTCATAGTGT
Right flanking sequence: Indices 1739303 -- 1739802
ACTAAGAGCCATCGTCTCGTAGAGATCTTCAGTTAGGTACGACTGTAAATAAACCCCTTTAATGA
GGCCTACTCGTCTAATCTTTTGATTCTATATCATCTGCTGGACTAGCTGAAGTAACAATTACTAT
AAAGAAGGGATTCGCTTAACCAACCAATAGCTCTCTTGCTGGGCTTTTTAGATAGTTCACTCTGC
TTCGGGAAGTTCTTGATTTTGAGTTTCAAGAAGAACATGCTTAAACCCCTTCGACTAGACAGGGG
AGCTCTTATGATTCAGGCAAAATGAGGAGTTTTCTCAAAGTTCACGATTTGGAATTCTATTTGTT
AGCGGAAATGTCATAATGTCCAAAAATCCCAGTAAAATGCAACTTACATTCCGACCTCATCCCTT
AACGGATTATAGGTATAGTTCGGTTCGATTAACTAAGCAGTGGAGTGGAAGGGGTAAATTCATAG
TCTCGAATCAGAAGCAATAAATAGGCAGACTCAATCTCATCATCT
Found at i:1739929 original size:29 final size:29
Alignment explanation
Indices: 1739887--1739945 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
1739877 ACTTAGTCTC
1739887 AACGAGCCTAATCTCTTATACATGATTTA
1 AACGAGCCTAATCTCTTATACATGATTTA
1739916 AACGAGCCTAATCTCTTATACATGATTTA
1 AACGAGCCTAATCTCTTATACATGATTTA
1739945 A
1 A
1739946 TTGCGAAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (29 bp):
AACGAGCCTAATCTCTTATACATGATTTA
Left flanking sequence: Indices 1739387 -- 1739886
TTGATTCTATATCATCTGCTGGACTAGCTGAAGTAACAATTACTATAAAGAAGGGATTCGCTTAA
CCAACCAATAGCTCTCTTGCTGGGCTTTTTAGATAGTTCACTCTGCTTCGGGAAGTTCTTGATTT
TGAGTTTCAAGAAGAACATGCTTAAACCCCTTCGACTAGACAGGGGAGCTCTTATGATTCAGGCA
AAATGAGGAGTTTTCTCAAAGTTCACGATTTGGAATTCTATTTGTTAGCGGAAATGTCATAATGT
CCAAAAATCCCAGTAAAATGCAACTTACATTCCGACCTCATCCCTTAACGGATTATAGGTATAGT
TCGGTTCGATTAACTAAGCAGTGGAGTGGAAGGGGTAAATTCATAGTCTCGAATCAGAAGCAATA
AATAGGCAGACTCAATCTCATCATCTTCATTTGCAGTTTCTTTTCTTGTCTTACTCGGGGGAATA
CCAGAACTAATCCTTGAATCTACTTTGGGTACCGGACTTAGTCTC
Right flanking sequence: Indices 1739946 -- 1740445
TTGCGAAATCTAATTAATTATGAACGAGACTATTACTTGGGAAATCCTATTCCTTGCGTAGCCGG
AAACTACTTTATTCAGAATTCAGATGTGACAGCGCTAAATATGGCGAATAAGAGTCGCTATGCCA
CGAACAGTTTTAGAATCCATTCTATAGAAGAAGAAGAAAAGAAAGAAGATATAGCGAATAAGAAA
CTCTTAAGATCTTCCTATGAACTTTGAATTCACTTCCATCTTTATCTCCTTACTCCTGCAAAACC
AATGGGCTCAGCAATATAGAATTTATCAAACTGCAGTTTCTTAATTCTGCTCAAAGCCATACAAC
CAGAAATCCGAGGCTCAACAACTGCCATAATTGAAGGTACCCAACAAATCTCTTGCATGTTGCAG
AAACCCCTTTTAACCAGCTCCCCTACTGTTCCATAGGATTATATCCATTAAAATTAGAGGGGTTT
GGGGTCTCTAGATTCACAAACTCTCTAGAGTGAGATCAATCCAAG
Found at i:1742789 original size:23 final size:23
Alignment explanation
Indices: 1742763--1742810 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
1742753 CATTCAACAG
1742763 GAGCAGCTCAAACCATTACATTA
1 GAGCAGCTCAAACCATTACATTA
1742786 GAGCAGCTCAAACCATTACATTA
1 GAGCAGCTCAAACCATTACATTA
1742809 GA
1 GA
1742811 TTCGGGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.25, G:0.15, T:0.21
Consensus pattern (23 bp):
GAGCAGCTCAAACCATTACATTA
Left flanking sequence: Indices 1742263 -- 1742762
TCGAGCACTGATTGATTGTTGTAAGTTAGAGTTTTGGGTCTTAGGCTCTAAGGTCAGGGAAGGCA
GCTAGTACCTTTTTAATTGCGGTCTATCCCGGTATTCATCCCGAATCATTGAACTAGCTTTTATG
GCGTGACTGCTTTCGCTTGAGAACAGGGAATGAACCCTTTTCTTTTCCCCATACGTTCGTGAGCA
AATTAGATCCGTACCCCCAGCTCCGCCTAGAAACCCTGCCAATGGAGGGGTGAATCCTACTTTTT
AAAATAATCTTCATGTAGTGACCTATATTTCGTATCTGAATACATTATTTTACTCACTCTTAGAT
TCCGAGTTAGCTGCGGAGTCACTAGCTAGAGAGTTGGAATGGAAAGCTTTACTTTGATTGACTCT
TTCTTCGCCTGTGCTATAAGAAGGAGACGAGTACCCTTCATACGGTTATGCCGCATCTCTATCTC
TAGGGGAAGGAGCTATATCGATTCCTAAACCCTGACATTCAACAG
Right flanking sequence: Indices 1742811 -- 1743310
TTCGGGTTCTTATCGCTCTTGGGAAGTAGATTTTGTACGGGGTTTTGATGATCTAATGAGTAAGC
CTTTATCCTTTCCTCATTGGATTACAAGTTAGTTCAGAAACAGAAGTTATCCCAAGGAAGAACCA
ACCAAACGGACACGCTCTGACTAGTTGTTGCAGTTCTCAAGTCAGTTGACAAAGAAAGTCATCAA
TGTATATGCCACCCAGGGGCGGATATCACCATTTAATTAATTGTTGTTAGTATTACGACCCGGGA
TGAACTACTCTCTCGCAAAGAGCCTTACTTCGCTTCGGGCATTTCCCTCTCGCCCTTTCGCCTTC
TCTTTAGCGTTGTTCTTCCGTCTCTTTCTTGGGGGGATCTCGTAGTGAATCAGCAACTATTAAAC
ATCCATTGGATTTTGAGCACAAGTAACGAGTCTACTCTCATTCCAAATAAATCTTCTAAGTTGAT
GAGTTAGCCTTTAATAGAAGCACTCATCCCAAGCAAATAAGAACC
Found at i:1743383 original size:26 final size:26
Alignment explanation
Indices: 1743347--1743398 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1743337 GCTTGCCCTA
1743347 AGTGGTGAATCCTCTTTTGACACTCC
1 AGTGGTGAATCCTCTTTTGACACTCC
1743373 AGTGGTGAATCCTCTTTTGACACTCC
1 AGTGGTGAATCCTCTTTTGACACTCC
1743399 TTTCTACATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (26 bp):
AGTGGTGAATCCTCTTTTGACACTCC
Left flanking sequence: Indices 1742847 -- 1743346
ACGGGGTTTTGATGATCTAATGAGTAAGCCTTTATCCTTTCCTCATTGGATTACAAGTTAGTTCA
GAAACAGAAGTTATCCCAAGGAAGAACCAACCAAACGGACACGCTCTGACTAGTTGTTGCAGTTC
TCAAGTCAGTTGACAAAGAAAGTCATCAATGTATATGCCACCCAGGGGCGGATATCACCATTTAA
TTAATTGTTGTTAGTATTACGACCCGGGATGAACTACTCTCTCGCAAAGAGCCTTACTTCGCTTC
GGGCATTTCCCTCTCGCCCTTTCGCCTTCTCTTTAGCGTTGTTCTTCCGTCTCTTTCTTGGGGGG
ATCTCGTAGTGAATCAGCAACTATTAAACATCCATTGGATTTTGAGCACAAGTAACGAGTCTACT
CTCATTCCAAATAAATCTTCTAAGTTGATGAGTTAGCCTTTAATAGAAGCACTCATCCCAAGCAA
ATAAGAACCAATAGTACTAAAAAGTGGGCGTGCTTGCTTGCCCTA
Right flanking sequence: Indices 1743399 -- 1743898
TTTCTACATCATTTCGAGGTCTTACCCTTCATAGCTCTCCTAGTCGGCGATAGGCTCACTGCACG
ATAAGGCGCCGTAAGGCATGAGTTTACCAGTTGGGGAAGAATCGAATCCTTAAGGATACTCCAAT
CCAACACTTATTAATCGACTATTTCCCTCCCTCTCCTGCACTCAATGCTATTGTCTTTTACGAGA
TTTATTACTTACTCAAATCCGAATCATCGGAATCATATGAATAATTCGTTAAGAGAAGATAAAAA
GGGATTTCCAGTGAGATACCAAAAAGAAAATGAAATTCAAGAATAGAATTCATGTTATAAAGGCC
TAGCTTAAACGAGCTTCCTTACCTCCCTTGATCTCTCAAGCTGATCTTAGGGACAGAAGAAGAAA
GCCTTAGCCTGTCTTTCCTGTCCAACCATATGAAAAATATCCAACGAGCAGGTATGTCTAGCTTC
CACAGCCAACGAAAATCACAGGGGCTTACCTGACATTCATTTTTA
Found at i:1745250 original size:14 final size:17
Alignment explanation
Indices: 1745216--1745250 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1745206 CTCCTTACGT
1745216 TAGTTCTAAATAAATAG
1 TAGTTCTAAATAAATAG
1745233 TAGTTCTAAATAAATAG
1 TAGTTCTAAATAAATAG
1745250 T
1 T
1745251 GATAGCGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (17 bp):
TAGTTCTAAATAAATAG
Left flanking sequence: Indices 1744716 -- 1745215
TCTCCACGAGGTCAGCATATTTGAACTTGTTGAAAGGGGAAGAGATCGACTTGGATGGAAATTGG
CTTTGGCTTTGGAAATTTCAAATTCCAGCTAGGTAGATTTATTTTCTTTGGCTTGTAATGCGGGG
GAAATTGGTTACCAAAAACCTTCGATTTTCTTTCAATCAATAAATCTCGTAAGAGAAGATGGGAT
AGCCTCTAAGTCCACCGATATTGACGTGATGACTAAAAGCAGGTGGGATACCTTTCCTAAATGGG
CTATCTCTTGACGTAGTTTATGGTTCAAAAGAAAGGGACGAAGGCGCTGCCTAGGATTAGGATTG
GGTAGGTTTTCTTGCTTAGTCACCAAGAGAAAAGTGAACAGCGGTACCTCAGTGTTCCGAACCCT
GTATTTGAACGATCAGTGGCTGCGAAACTTGACTTGTGTCCGATCGATATAAAAAAAATCGGTAC
AGTTAGTTACCCGGAAGCTAGCTACTCCTGCTCCGCTCCTTACGT
Right flanking sequence: Indices 1745251 -- 1745750
GATAGCGACCAGTCCCGGAAGGACTTTATTAACCTTTAAGATAAGACAGCGTAATTCCATTCCCT
TTTCCTGCTCGTTAGTGTAGGAGTTTTGTTTGATTGCTGTGCTGGTATGAAATCACTCGTTATCA
CGAGATGGCCTCAAGCAAAGACAAAATCAAATCTAATTTTCCCACCTTCCCTTGGTACAGACTGA
AACTCAACTAAAGGAAAGGCTGACCTTACTGCGTATTCCGCTTCTGCAGCTTACTCTTATTCGGA
TTCAGGAACAAATTACAAAACTGAAACTGATTCAAATTCCAAGCCTACTTCAGATTACGATTACG
ATTCGGAGCCTCCTCGGTCTTCATCGTTAAGCTCTACGGAGTAGAGTTCTGTTCTATTTTAGGGC
ATAACGTTGTTCCCTCTTTTCTTCCAGAGGGGACTCATATCGATTCCGCTACTGATGCTGATGCT
TCTTATTCTGATTACGCTGTAGATGGCCCTATCAAGAGCAGAGCA
Found at i:1760433 original size:28 final size:28
Alignment explanation
Indices: 1760393--1760450 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
1760383 TACCTCATCC
1760393 ATAAGCACTTTGAGTTCTTATTGATTTG
1 ATAAGCACTTTGAGTTCTTATTGATTTG
*
1760421 ATAAGCACTTTGAGTTGTTATTGATTTG
1 ATAAGCACTTTGAGTTCTTATTGATTTG
1760449 AT
1 AT
1760451 TGGGCAAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.47
Consensus pattern (28 bp):
ATAAGCACTTTGAGTTCTTATTGATTTG
Left flanking sequence: Indices 1759893 -- 1760392
ATAGGTAATGGGGCACCCCCGGTCTATAGCACACGGGCGTAGGTAAATGGGTTGTGTACGATACA
GGAATATCAAAGGCTTAGCTCTAAAATGAAAATGCTTAACCCCGAGTTTCTAAAGGATTGAGCTT
CTGACTCAACGGCTAGAAAAATAGCTAATTGCGTGGAGTGCGAGACACCATTTGTAAGGGCGCTT
GACGGCTCATCGTATTGTTTTCTCCTGAACGGGGGTCCTTCGCTGTTGAAGTTTCTTATGAGTTT
CAATTCTTCTTCATCTTTAGAAGTAGTTGATTCGTATTCATAGTTCTGTCTTGTCTGAGTATCAT
GAAGAGTTATCCTTTTCTAGCTCTCGAGTTGAATAGGTTCGCGGTCCAAGAGCCCATGAGTTACT
ATCTCGGGCGACATTCCTTATCTTGCTTGAAAGCCAAGGAAGTGAGATTTTAGTAAGGGGGAACG
TGCTACCTCCACATAAAGAAAGGTATCTGAAATAGTACCTCATCC
Right flanking sequence: Indices 1760451 -- 1760950
TGGGCAAAGGATTTAACTCTTCCCTTTCACAATTAAAGTTCTCGCTCATGAAAGAAAGAACCATA
GGAAGGGAAAATTACCCACGCTTTCTAAAGGATATGAAAGACCTGTAGCAAGGTTTGGCAAGCCT
ACCACTTTCTGAACCCAATATAAGGCAGGCTAATTCCTCGCCATCTACCCTTCCTTTTCTGTTCG
CCTATTCTGATTCATCTTTATCTTCCCGGTCTTCTTAAGTAAGCTGGGATAGGCAAGATGAGTAG
TTAAGCTGCGATTCACTAGCTTCAGAGGTCGATAAGGATTCACTCCCTGTTCGCGATAGATAGAC
TCTCCCCAGTCCAAACAATAAACAGATGATTTCCGCTATCGTCTTGATTCGATTATCGGCTGTCT
ACATTGAATCGTCTGCATGTCGATGTCGGTTGTCTGCATTCATTCCATAACCGGTTGAGGAAGTA
GATTGAACCCTAGTTCGCCCTTTACCCCGCCACCAATCGACGAAT
Found at i:1765522 original size:22 final size:22
Alignment explanation
Indices: 1765497--1765540 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1765487 AATATAATAT
1765497 CATATAGAAGAATTCATGTGAA
1 CATATAGAAGAATTCATGTGAA
1765519 CATATAGAAGAATTCATGTGAA
1 CATATAGAAGAATTCATGTGAA
1765541 TTGGATTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (22 bp):
CATATAGAAGAATTCATGTGAA
Left flanking sequence: Indices 1764997 -- 1765496
GTCAAACCTTCTTTGAGATTGCCTTCCTCCTCCTCTGCCACGTCCTCTTGTTGTAGTTGATTGCC
AATGTTCATCTCTATTTTGAGATGCATTTTCAGTGCCTCTTCCTCTCCTACCTCGACCACGATAC
TGTCCACGGCCTCGACTTCTGTAGCTTGGGCTCCCCTTTTCCTCCTTGTCTTTCAAAGTGAGCTT
TGATTGTAACACTTGCTCCACGGCTGCTTCCTTTTTTCTCCTATTAAGCTTCTCTTCATGAGCTT
CCAATGATCCAGTCAACTCTTCAATGGACATCTCTTCCAAGTCCTTTGATTCTTCGATGGCTCTT
ACTACATGATCAAATTTTTCATGGACTGATCTAAGGACTTTTTCAATCACTCTTAGATCAGAAAC
ATCTTCAACAAGCCTTTTCATTTGATTCGCGATCGCCGTAACTCTTGAAACATAATATGAAACCT
TCTCGGACTCCTTCATCGATTTCTTTGATTCTATGAATATAATAT
Right flanking sequence: Indices 1765541 -- 1766040
TTGGATTCTCGTAAGAGTTCTTTATTTGGTAGTTGCCAACAATGTATCGATCTCTTAAGACTTTT
TTAAGGAGCCGTAAGTACTCGACCGAAGGCGAAGTTTTTTCTTTGTCAAAGGAATCAACAACAGC
AGTAGGCGCTCGATTTGATAGCCCTCTGCTAGGGTCCTACATGTCTTCATGATAGGGCTCAATTC
TGTGGTTAATAATATTTGTAAATCGGTGGAATACAACAAATCAAGAAGAGATAAGATATATACCA
CAGATATCTTTTTAACCAGAGCTTTACGTATTGGGGATTATCCCGCGCTAAATCAGCATGACGTT
GTGCTTACGGCTCTATACCCCAACCCAATTTCTACCGGGAGAAAAGGTTCTTATTACAAGTTTTT
GATGCTTAAAAAAGGACTGCAAGAGGGACGAATGGAAGTTCATCGCCAAGACAAGGGACGAAGGT
AGGCGAACGGTTAATGTAAATGGGTAGGATTCTTTCTTCTTTCTC
Found at i:1768502 original size:37 final size:37
Alignment explanation
Indices: 1768452--1768525 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
1768442 CAAGCAAGCT
1768452 GAAATAGAAGACAAGGCATTCCCCTCGATTACCGTAC
1 GAAATAGAAGACAAGGCATTCCCCTCGATTACCGTAC
1768489 GAAATAGAAGACAAGGCATTCCCCTCGATTACCGTAC
1 GAAATAGAAGACAAGGCATTCCCCTCGATTACCGTAC
1768526 TTGGATAGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (37 bp):
GAAATAGAAGACAAGGCATTCCCCTCGATTACCGTAC
Left flanking sequence: Indices 1767952 -- 1768451
CCTAGAAAGGTTTGTGGATGACAACCCGAAGAGGTGGGCGGAACTGCTCCCTGAGGCGCTATGGG
CCTATAGAATGTCTCAAAGGAGTAGTACTGAAGTAAGCCCATTCACGCTAACTTATGGTCATGAT
GCCATGATACCTGCTGAAATCTTAGCCAAGTACATCTGAAACCTACCCTAAATTCTGACTAGGGA
TAGCTACGGGTACTGATCACCTCCTTTGATACTGATTCTAATGATGGAATTCGGAAATAGAGGTT
TGTCTAAGTCGATTTCGACACTGACCCTCTATGCGAGGGTAGCTTTCCAAAACGACCTGACTTGG
GAAGAATACTATGAAGCAATGACCATGGAGGTAGAAGATCTAGACAGCGAGAGATTGGCCGCCCT
TGAGAAAAGCTGAAAACCAAGAGCAGCAGGGAATTCTCCTTCTTGCATAACCATAAGCGGATCCA
GTAAGAGCAAGCGCAAGCGTTAAAAGCCGACTTGGCAAGCAAGCT
Right flanking sequence: Indices 1768526 -- 1769025
TTGGATAGTCTGCCTACGCTACGGGAACGAATTCCTATGCCTGGCCTGCTTTGAAAGCTATTCCA
TTTCACTCAAGCCTTCAAAGATCGGATGCGTACTGTTAAAGAGTCGAGTTGAAGCCAGAGAGAGG
GTATGTACTTTAATCTCCAATGGCAGAAGATGAGGACGAATATTGATTCATCGAGGAAAGTCAAA
CCACTTACACGTTCCCGGATCCATCTCCTACAACCGGGGAATATAAGAAAAGCTCTAGAAGTAAT
CGATCTTCCATAAGCGGAAGCCACAAGACAAGCTCCTAATAGGGCAAACTTCCTAAGGCGAAACC
GCTTCTCTGGTCCGATAATACATCAAAGCAATAAATAATCCCGCGCTCTTCCTACGCGCATTCCC
TGTCTGTCTAACCTCTCGGGTTCACTCTGAGAACTGGTTTCCCAGTCGCAGCTAAGCCAGCTAAA
GAGCGGAGAGATAGAGGTATTCTAGAGACCTTCCTTTCCTTGTAA
Found at i:1776376 original size:23 final size:23
Alignment explanation
Indices: 1776346--1776391 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1776336 TACTGCCCGA
1776346 AGCAAAAAATAGTAAGTTTAAAG
1 AGCAAAAAATAGTAAGTTTAAAG
1776369 AGCAAAAAATAGTAAGTTTAAAG
1 AGCAAAAAATAGTAAGTTTAAAG
1776392 CTTTAACTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.04, G:0.17, T:0.22
Consensus pattern (23 bp):
AGCAAAAAATAGTAAGTTTAAAG
Left flanking sequence: Indices 1775846 -- 1776345
ATCATGTAGAGCAGTAGAATACAGGTCTATGTAATATTGGCGTACCAATTCCTTACTCTCATCTG
TATAGCATATTTATGGGATTAAGTGCGTGTCAGGTTCGCTTTACATTCTGTCTGTGCTAGCTAGG
CTCAGCTCAGAACCGAGTTATGGATCTTTGAGGAAAAGAAAATGAATGCTCGAATGCTAAGTTAG
CAAGTTAAACAACTCTTGGATAGGTTTGATATGATACGAATCAGTTTGTACTCATTGACTAAATA
CGGGTGCCTTTACGTAGCTACTTCTTCGCCTGGCATGAGTTTACCAGTTGGGTAAGAATCCTTAA
CTAAAATCCAAGACTTATTAGTCGAGTAGTAACCACCCTCTCATGCACCTGAAACTCGAGCTGAG
AAAGACGAGGAAAGGTTTGATAGAGGGGAAGGAAAGATGGACGCATTCGCCGAAGTAGAGCTGCT
TGTCGTTCTCGTGCTGGAATAAAAACCTCCTAATTTACTGCCCGA
Right flanking sequence: Indices 1776392 -- 1776891
CTTTAACTGATGAGCCAGGAAAGGACCAACCTTACCCATTAAACGACCAAAAGGAAAAGGCTTTC
GTTTATGGTTTCCGACGTAGGGCTGCTTGCCGAAGCGGAGAAAGAGGAGCCCAGAGAAAAAGAAA
AAGAAAAAGAGACGAGGAAAACTCACGCACATACGGAGAACGGCTTTATACTATTTCGCACAAGT
GATCTTATAGGAGTTGGATTTGATACACTCGAAGAAAGCTGTATCCTCGGTGAATTCGAGATTGA
GTTGAGAACTTTTTAAAAACACCGTAAAAATCGGTATCGAGTCATTTCCTTTCCTAAATTGAATT
CCAAATACGATAAGTTGTTAAACCCCGGGAAAAATGCTTACTTTGCCTTTTCCCTTCCTAACGGG
TCATTCTAAATCGACTAAATTGTTAAACCCCCGTATTTTTGCTTACTTTGACTTTTCAGGGAAGA
AAGCTCATTCTAAATCGTGAACTTTGATTAAACCCCGGGAAAAAT
Found at i:1788896 original size:24 final size:24
Alignment explanation
Indices: 1788864--1788913 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
1788854 CGATAAAATT
1788864 AGACTCAGAGGATAGGTTTACTCC
1 AGACTCAGAGGATAGGTTTACTCC
1788888 AGACTCAGAGGATAGGTTTACTCC
1 AGACTCAGAGGATAGGTTTACTCC
1788912 AG
1 AG
1788914 GAAATGCTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (24 bp):
AGACTCAGAGGATAGGTTTACTCC
Left flanking sequence: Indices 1788364 -- 1788863
ACCGAGCATGGTTAGAGGGGGAGCCCTAGGCCTTTTGGGGAGTAGTCTTTACATGAGTAGAAGCA
ACCGGTTCAAATTGTGTCTCTTCCACAAATTGTGGTGAAACTGGGTCAACTTGGTTCTTTCCCTT
TCGTGCCCTCTCTTTAATTTCTCTAAATGAAAGATTTTCCCCATCACTGCGTAATCCCTTATCCC
ACGCCTTAATTACATCTTCATGAACCGCAATTTCCTCCTCCCTGTTTTCAATCTTTTCCAAGGCA
CCAAATCTCTTACTTAATTAATGATCCCGATTATCCTACATATAGTGGGGATTCTGATGTCTATA
CGGAAGTGTAAGGTTTCTCTTGTGCTTGCTTAGAGGGACAAAGCCCAACCTTTTTTGTAGTACGG
TAAGCCCCTTCGGAATACCCAGGAAAGAACCCGGAAACATACAAGCAAAACAAAATAGAAAAATT
CGGGTGATGTGTCGCATATTCCACAAACAGGCTTCCGATAAAATT
Right flanking sequence: Indices 1788914 -- 1789413
GAAATGCTCGAGAGGTATCTGAATCTTCGATGAGTCAAGAAGAAGAAACTATTGAACATCCATCA
AAGGCATCAAGTGAAGAACCTTATTCCTCTTCTACTTACGTCGAATCTCCCTACCTATTCTCCTT
ACTAACGGCTACTTCGTCCACTTCTTCTTACCCAAGTCCGGACAAAAGGATTGATCTGCGGGTTA
CTTTATCTCTTCGGTTGGGTTTTTCTACAACTTCGAAATATTCTTCTTTACGTTTTCCCGTCTGG
TAGCTTTGAAATTGTAGCGGTACCAAATCTCGCAGCAATGCGGCTAACAAGCTGAGTCCCATATT
TCAGGAAAGTTCCATGGCAAGGCGACGAAGAAGAAAGGGCTTATTAGTATGGGCCCTAGAAAACC
TTTCAAGTGCAGCTAGCTACAGTAGCTATTCTATTACTTTTGAAGAATTAAAGCATCGATCGGGG
TTGATTGCTTTCCCTACCGTCCTTGGGTACTCGAAGGATGAGATC
Found at i:1790733 original size:20 final size:20
Alignment explanation
Indices: 1790708--1790748 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
1790698 ATAAGTCAAC
1790708 TGGCAACCAATAGATTAAGT
1 TGGCAACCAATAGATTAAGT
1790728 TGGCAACCAATAGATTAAGT
1 TGGCAACCAATAGATTAAGT
1790748 T
1 T
1790749 TCCCGAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (20 bp):
TGGCAACCAATAGATTAAGT
Left flanking sequence: Indices 1790208 -- 1790707
GGGTTACGATTGACGGACAAAGTAGACCCCTACCCAGTCTGCCCAATAAAGAGCGTAAGCAACTT
TGAGGATTGGTTTAGAGGCTCCCATGACAGATAAGAAATGCCGAGCCACTTCATCCAAGTTCATG
GAATCGGATTCCTTTTAGTCCGGTACCCGAGGGAGAGCAGCTATTGAATTTCCTGACATGGACTC
CTCTTCTACTTGGAGTTCGGGAGCTAACCTGACGGTTTCATCCCAGAAAAACGTCAAGAAAAGAG
AAGAACCACTCACTCGGAAAGAAAGACCCTCATTAACTATCGATCTTCGAGGTGGTTCCTTTATC
TCTTGCTTGCAACCTTTAATCAAGAGGAGCAGGACCTACCGTTTACTAGATCCCCTTCAACAGCT
AGAAGAACTGTTAAAGAAGAGTTCTGTTCACCGATAATGGCGAAGTCGCTTTCTCTTACGAGTGC
TATTCAAAATCTATACCCGACAAGATTAAGAAATAATAAGTCAAC
Right flanking sequence: Indices 1790749 -- 1791248
TCCCGAGAATCAGCAAGCAAATTAGCTACGAGCTAGGGCACTGCAGTTAGAGCTAAGTCTTCTCC
TTCTAAGCCACCTTCCTCTTCTCTTGATTCCCTTTCTACGTCCAATTCTTGTTCACCTCATTACA
GGACTATCTCTTTACCCTCCTAGAGAACCAGGTGTTAACCATAACGCTAGTGACGTAACAAAGGC
GAGGCGCAGCTAGGCCTAGATCTGACCTTTCGAATGAGATCATAAGAGCTCTGTCTTAGTTGACT
TTCTAGTTTGACTGCTTAGCTGCCGGGAGGTTAGGCACTCGGAACAGACGTAATCCCAGCTCCCC
GCTCAATTAACAGCTGCTTTTCTGAACACTGTCTATTGTCGTAGCTTATTGAATCACCCAAGCTG
GTCGAGTGATAGTGATCTTATATCTTATAGACCACCCAGCCTTTAGGACGTAGACCTAAGATAAG
CCTATCTCTTAAGGCGGAGTCTTTCCCTTTCGAGCGCTATACACC
Found at i:1791291 original size:23 final size:23
Alignment explanation
Indices: 1791263--1791309 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
1791253 AAAGGAGATG
1791263 GCTATAGTTGTTCAATTCCGTTA
1 GCTATAGTTGTTCAATTCCGTTA
1791286 GCTATAGTTGTTCAATTCCGTTA
1 GCTATAGTTGTTCAATTCCGTTA
1791309 G
1 G
1791310 TAGGGTAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (23 bp):
GCTATAGTTGTTCAATTCCGTTA
Left flanking sequence: Indices 1790763 -- 1791262
AAGCAAATTAGCTACGAGCTAGGGCACTGCAGTTAGAGCTAAGTCTTCTCCTTCTAAGCCACCTT
CCTCTTCTCTTGATTCCCTTTCTACGTCCAATTCTTGTTCACCTCATTACAGGACTATCTCTTTA
CCCTCCTAGAGAACCAGGTGTTAACCATAACGCTAGTGACGTAACAAAGGCGAGGCGCAGCTAGG
CCTAGATCTGACCTTTCGAATGAGATCATAAGAGCTCTGTCTTAGTTGACTTTCTAGTTTGACTG
CTTAGCTGCCGGGAGGTTAGGCACTCGGAACAGACGTAATCCCAGCTCCCCGCTCAATTAACAGC
TGCTTTTCTGAACACTGTCTATTGTCGTAGCTTATTGAATCACCCAAGCTGGTCGAGTGATAGTG
ATCTTATATCTTATAGACCACCCAGCCTTTAGGACGTAGACCTAAGATAAGCCTATCTCTTAAGG
CGGAGTCTTTCCCTTTCGAGCGCTATACACCGCGCAAAGGAGATG
Right flanking sequence: Indices 1791310 -- 1791809
TAGGGTAAGGGGTTGCGTGGCATGAGCTACTCGAGCGAAAACAAGAGGGAATATGTAATATTCAT
TTTCCTCGCTTAGAAAAGCGTTCCTTCTCTCAAGAGATTCCCATTGAGTGGATAACTCTTGGCGA
TGTTGCATATCCAATCGGGCTTGGTGCTTTTGTTTTCAAAAGCCCTGTAAATGCTCTTCCTGGGT
CGTTTTTACTTCGCAATAGAACGGGGATTCGTGCCCCTCGTTACATAAGCTTTGCAAGACCTGGC
ATAGAGCGGGGTGATTGAATTCGAAGGGTTCAAGGTGTACCCTCAGTATGGAATCCAGGTCCAGC
GTAAGACTAAGTAAGGTACGGTATAAAGTGCAATCAATCTCCTACAACAGACAACAGAGGGCTCT
GACCTGACCACAGTCAATCAGTCTATTGTTATGGTTCTATGAGGAAATCGACCCTGGTCATCATT
CCTGGCCGGCTGGTGCTTTTTTGTGTGTTAGCCAGGTGAAAGTTG
Found at i:1798466 original size:13 final size:12
Alignment explanation
Indices: 1798439--1798471 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
1798429 TCCCTACCGA
1798439 TATTTGTT-TTT
1 TATTTGTTCTTT
1798450 TATTTGTTCTATT
1 TATTTGTTCT-TT
1798463 TATTTGTTC
1 TATTTGTTC
1798472 CCGTAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 1 0.05
13 11 0.55
ACGTcount: A:0.12, C:0.06, G:0.09, T:0.73
Consensus pattern (12 bp):
TATTTGTTCTTT
Left flanking sequence: Indices 1797939 -- 1798438
GGTCAAGCTTTCAAAGAGCTGAGTCGTACCCACTAGCTTTAGACTAGGCAAAATAGTACGTAACT
GAAGAGAGAGCGAAAAGCTAAGATCACATCGCTTTCAACCCCTAGGGCACTTACTTTATTAGAGT
AGGTAACCCGCGGAGGAGAGGGACGACCTAGCCCAACCTACTCGCCTTATCGAAAGAAAGAGATA
GCAAGCCGGAAGGACGACGGGAGATGATCGTTCGGACAGGAGATGTGGACGAGTTTTAGCCTAGC
TCCCACAATAAGAAGGTACCGGGACCTCATTGAGCACAAGATTTGAGCGGTTAATGGGTACGGAC
TGTAAATTCGTTGGGAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCGAATC
CGCCATAACATAAAATGATATAACCCGTTTTTTGTATTTTGCCAGAAAAGCCAAACAAAAAAAGG
GAAGAATAAAAAAGTCTAATTTTCTGATCTATCCATCCCTACCGA
Right flanking sequence: Indices 1798472 -- 1798971
CCGTAAATTCTGAACTTGATAACGATAACGATTCATATCAGGATCATTATCATTAAGTAAAAAGT
TTAATGAAAAGAAAGAGTAAAGTAAAGAAAAAAGATCCCTTTTTTTTCATTTTCAAATTGATTAT
CGATTGATTTGGCAATAATGAAAGTATTACTACTAACTAGTAATTCGCATCGCTCTCACTAGGGT
GCATACCCGTACGGATATCAATATATCACTCGCGCCTTTGTTTGTTACAACACGGCGATTCGAAT
CTAAAAGATAAATAGAAATGGTTTATTTAAATGAAATCATAAGAGTATCTATGCTATGCTATACA
CTTTTCTTTATTTCCCTGGGATTGTAGTTCAATTGGAAAGAGCACCGCCCTGTCAAGGCGGAAGC
TGCGGGTTCGAGCCTCGTCAGTCCCGACGGATACAAGAAAAAAATACATAAATTCATCCCCCCAT
TTTCTGTGAAAGGAGACACTAATGACAGAATTTTTCGTTCCCAAC
Found at i:1805098 original size:14 final size:14
Alignment explanation
Indices: 1805079--1805106 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1805069 AAAGTGTCAA
1805079 CCAAATTATCTTTT
1 CCAAATTATCTTTT
1805093 CCAAATTATCTTTT
1 CCAAATTATCTTTT
1805107 AAGGAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (14 bp):
CCAAATTATCTTTT
Left flanking sequence: Indices 1804579 -- 1805078
GCCCCCGGGACTCATTCCTTTGCTCGAACAAGATGCTAATCGTCTTGCTCTTCGAAGAGCTTAGT
TGATTTATCAGCATCTTTTGTACCCAAAACAAGGAATGGCCTTCCATGAAAGGGAAGAGAAGAGG
CAAAGAGAGACCCAACCTGTAAGGGTAAGTTCAGAGAAAAAACCAGCAGGGAGGTTGTGCAAAGA
ATTACAAACAGCAGAAGCAATTGGACAGTCTCTCAGGATATGAAGAATAGATTCCTCACAGTCAG
GGCAAATATCACAACATAAATCATGGCCAATCTTTCTATGATAGAGCATGGATTTACAAGGTATT
TTATCATGAGCAAGAGTGCAGAAAAGATATTTGACACGATTATGACAAGGAATTTTCCAAAACTT
AGACCAAAAGGGGTCAGCAGGAGTCAAAAAATCAACATTATTTGCTAAATCATAAGCACTTTTAA
GAGAAAAATCAACATTACAGGAATGGAGCCAGCAGAAAGTGTCAA
Right flanking sequence: Indices 1805107 -- 1805606
AAGGAAAGAGGAACAGAGAGAATAAGATCAGTGATAGTATCAGGAAAGACAAAGGAGATGGTGAT
CCAAGTACCATCCACCAGAAGGAGATAGACAATTCTTAACAAGCATACCTTCTTCATCTTTGTTA
AAAGGGCCCTCAATAAGTGACCTCAAGGAAGAGTTAGAAGCCCATACATCATTCCAGAAGTTGGT
AAAGGCCCCTGAGGTAACAACTTTCTTAACCCCCTTCTGAAAAAGACCAAGGGAAGGGGCAAGAG
CTTTAGCCACATCAAAGCCATTGGGGTTAGAAGGGGTAGTCAGGTTGTATTTGGAACAGAGGGCT
TTAGCCCACAGATTATAAGGGTCTTTTCTAATCCTACAATGCAGTTTAGAAAGGAGAGAAATGTT
TCTGAGCTTAGCTTTCCTAAGATTCAGACCCCCNGGTAGTCAGGTTGTATTTGGAACAGAGGGCT
TTAGCCCACAGATTATAAGGGTCTTTTCTAATCCTACAATGCAGT
Found at i:1805634 original size:130 final size:129
Alignment explanation
Indices: 1805401--1805659 Score: 509
Period size: 130 Copynumber: 2.0 Consensus size: 129
1805391 GGTTAGAAGG
1805401 GGTAGTCAGGTTGTATTTGGAACAGAGGGCTTTAGCCCACAGATTATAAGGGTCTTTTCTAATCC
1 GGTAGTCAGGTTGTATTTGGAACAGAGGGCTTTAGCCCACAGATTATAAGGGTCTTTTCTAATCC
1805466 TACAATGCAGTTTAGAAAGGAGAGAAATGTTTCTGAGCTTAGCTTTCCTAAGATTCAGACCCCC
66 TACAATGCAGTTTAGAAAGGAGAGAAATGTTTCTGAGCTTAGCTTTCCTAAGATTCAGACCCCC
1805530 NGGTAGTCAGGTTGTATTTGGAACAGAGGGCTTTAGCCCACAGATTATAAGGGTCTTTTCTAATC
1 -GGTAGTCAGGTTGTATTTGGAACAGAGGGCTTTAGCCCACAGATTATAAGGGTCTTTTCTAATC
1805595 CTACAATGCAGTTTAGAAAGGAGAGAAATGTTTCTGAGCTTAGCTTTCCTAAGATTCAGACCCCC
65 CTACAATGCAGTTTAGAAAGGAGAGAAATGTTTCTGAGCTTAGCTTTCCTAAGATTCAGACCCCC
1805660 TTGTTTCCTA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (129 bp):
GGTAGTCAGGTTGTATTTGGAACAGAGGGCTTTAGCCCACAGATTATAAGGGTCTTTTCTAATCC
TACAATGCAGTTTAGAAAGGAGAGAAATGTTTCTGAGCTTAGCTTTCCTAAGATTCAGACCCCC
Left flanking sequence: Indices 1804901 -- 1805400
ATTTTATCATGAGCAAGAGTGCAGAAAAGATATTTGACACGATTATGACAAGGAATTTTCCAAAA
CTTAGACCAAAAGGGGTCAGCAGGAGTCAAAAAATCAACATTATTTGCTAAATCATAAGCACTTT
TAAGAGAAAAATCAACATTACAGGAATGGAGCCAGCAGAAAGTGTCAACCAAATTATCTTTTCCA
AATTATCTTTTAAGGAAAGAGGAACAGAGAGAATAAGATCAGTGATAGTATCAGGAAAGACAAAG
GAGATGGTGATCCAAGTACCATCCACCAGAAGGAGATAGACAATTCTTAACAAGCATACCTTCTT
CATCTTTGTTAAAAGGGCCCTCAATAAGTGACCTCAAGGAAGAGTTAGAAGCCCATACATCATTC
CAGAAGTTGGTAAAGGCCCCTGAGGTAACAACTTTCTTAACCCCCTTCTGAAAAAGACCAAGGGA
AGGGGCAAGAGCTTTAGCCACATCAAAGCCATTGGGGTTAGAAGG
Right flanking sequence: Indices 1805660 -- 1806159
TTGTTTCCTAGGTCGAGCGACAGAATTCCAACCAACAAGATAGATTTTTTTTGTCTCATGAGTGT
CACCTCAAAGGAAGTTCTTATGGATTTTGTCAATCTCAGAATGGATGGAAGCGGGCAAGAGGGTG
ACCTAAATAAATCCCAAGATTCTGCACTTTTTTAAGCTTAAGGATGCTATTGAGATGAAAAGCTC
TATCATCAGTCACCATAGGTGAGAACCACACCTTCGATTTTTCATAATTGACTTTCTGGCCCGAA
TGAAAGCAAAAGTCATCTAAGGTGTCAAGGATAGTGGAACAGTTCTTCTCATTAGCCTTAGCAAC
AAGAATAATATCATCCGCAAAAAACAGGTGAGAAATCTTTGGTTCATTCCTAGCAATCCTAATAG
GGTCCCAATTCCTAGCAAAACATTCATTGTCAATGGAGAGGGAGAGGTATTCCATGCAGAGAATG
AAAAGGTATGGTGATATAGGATCACCCTGGCTAATACCTCTAGAA
Found at i:1807218 original size:23 final size:23
Alignment explanation
Indices: 1807188--1807233 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
1807178 AAAAAACATT
*
1807188 ACCAAAATGATCTCTGTTCCAAA
1 ACCAAAATGATCTCTCTTCCAAA
1807211 ACCAAAATGATCTCTCTTCCAAA
1 ACCAAAATGATCTCTCTTCCAAA
1807234 TTTTGACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.28, G:0.07, T:0.26
Consensus pattern (23 bp):
ACCAAAATGATCTCTCTTCCAAA
Left flanking sequence: Indices 1806688 -- 1807187
TGGAGTCCATCAGGGCCAGGATCCTTAAAAGGTTTCATATCCCAGAGGGCCTTTTTGATCTCTTC
AACATCAGGAATGGAAATAAGAGACTCATGGGCAGAGGCATCAAAGAGGGGATTAATGAAGACGG
GTTTGGGGGGATTAAGGTCACAGAATATAAGGTCAGAAGAGTAGAGCCCCGCAAAAAACCAATTG
ATATGGGTGATAGAGTCCTCCCCTTGAATCTCATTATCAAAATCATCCTTCAACTTAACAATCTT
GTTCCTTTTCCTTTTAACAAGGGCTACGGTATGAAAGAAAGAAGTATTGCCATCTCCCTCAGTGA
GCCAGGAGATTCTAGATTTCATGGCCCAAAGGCTTTCTTCTTGTTTGAGCACCTCTTGAAGCTCT
TTACGGAGAAAATCATCCAAGTTAATGAGGAATTGAGAAGGGTTTTCAGAAAGAGATTTTTGAGT
CCCAAGGATACGAGCAAGCAATTTTTGTTTTTTATAAAAAACATT
Right flanking sequence: Indices 1807234 -- 1807733
TTTTGACATTCTTAACGAAAAGATCAACAGAATCAAAATAAGAAAGATTGGGGACAGCCCAGGAG
TTGTGAACAACATCAAAAAAAGATAAATCAGAGAGCCACATGGGCTGAAAACGAAAAGGTTTTTC
TCCTAAACAAGGAGTGCAAACAGAAGTAGAAAACAAAAGGGGACAGTGGTCAGATTGCATCCTAG
GAAGATGGAAAACAGTAGAGTCAGGGAAAGCAAGCAACCAATCATTCTTAATCCATGCCCTATCA
ATTCTTTCAAGAACAAGAGAGTTAATAGAATGAGAATTAGTCCAAGTGTGCTTGGGACCAACAAA
ACCAACATCAATCATGCCACAGTGATCAATACTATCAGCAAGAAAAGAAGAAGCAGAGAAACTAA
CAGCCCTACCCACTTTCTTGTCCTCAGAATTTAAAACTTCATTAAAGTCACCAATCCAGAGCCAA
GGCAGTTTAATAGTTGAATGTAAATACTTAAGATACTGCCACAAA
Found at i:1812344 original size:20 final size:20
Alignment explanation
Indices: 1812319--1812378 Score: 120
Period size: 20 Copynumber: 3.0 Consensus size: 20
1812309 ATTGGCATAT
1812319 TTCAATCAACTCTATGCTTG
1 TTCAATCAACTCTATGCTTG
1812339 TTCAATCAACTCTATGCTTG
1 TTCAATCAACTCTATGCTTG
1812359 TTCAATCAACTCTATGCTTG
1 TTCAATCAACTCTATGCTTG
1812379 AGCATAGGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (20 bp):
TTCAATCAACTCTATGCTTG
Left flanking sequence: Indices 1811819 -- 1812318
ATCTAGTATCAATGAAAAGTTTGTGGGTTCGGTGCCTTCTTTATCAAGGTGCTTACGATTTAGCA
ATATGATGGATGTTTGTGCTATGGTGGACTTGGCTTTTGAAGGTCCGGCTTATACCTGGACGAAC
ATGAGGAAGAGTTTGGCTCTAAAGACTTGTAATCGTGAGGTTTTTGGGAATGTGAAAGAGAACAA
AAAGAAACTTCGGGCACGCATCCTTGGCGAGATAAAGGCGTTAGCACGTAGTAATTCTCAAGAAT
TACAGGATCTGGAAGTTGATTTGATAGCTATGTATAATATGGTTCTTGAACAGGAGGAAATGTTG
CGGTTTCAAAAGTCTCGGGCGCAGTGCCGATTGGAAGGTGAGAGGAATACGAGAATCTTCTATTT
ATCAACGATTTGTCGTAGAAAGAGGAATAAAATTACTATCTTACGTAATGGTAGGTAGTGGGGAG
TAGGTAGTTGAGCCGAATGATTTGCGCAATTTGGTATTGGCATAT
Right flanking sequence: Indices 1812379 -- 1812878
AGCATAGGCAGCCATTCTTGGTGGGGTGCCCGAGTATTAATGAGGTTCATGTGGCTCCTCTAAAT
GCCTCGATTACTATGCATGAAGTCAGAGATGCTCTCTTTCAGATGAAACCTAATAAGGCTCCGGG
TGTGGATGCTTTGATGGCAGGATTTTATCAACAGCTTTGGTATACTATTAAATTTTAACTCACTT
CTTTGGTGCAAGGGGCCTTTGAGAATGCTTATTTTCCTGTTGCATTAACTGAAAGTTTGGTCGTT
CTAGTCCCAAAAGTACATGTGCCGGAATATGTTAAACAATTTCGGTCTATCAGTTTATGCTGTGT
AGCTTTCAAGTTAGTCACAAAAGTGCTTGTGAATAGACTGCGTCCCCTTATGAGTTGCTATCACC
TACTCAGGCTAGTTTCATTCCTGGTAGACAGGCTAAGGATAATATGATGGTTGCGCAGGAACTGA
TACATTGTATTAGGCGATCTACTAGCAAGAATGCTTTAATGGCTG
Found at i:1816165 original size:29 final size:29
Alignment explanation
Indices: 1816133--1816190 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
1816123 GCAGTAGACG
1816133 AAGATAAGGGAAGTAGAAAGCATATGTAT
1 AAGATAAGGGAAGTAGAAAGCATATGTAT
1816162 AAGATAAGGGAAGTAGAAAGCATATGTAT
1 AAGATAAGGGAAGTAGAAAGCATATGTAT
1816191 TTGGATAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.28, T:0.21
Consensus pattern (29 bp):
AAGATAAGGGAAGTAGAAAGCATATGTAT
Left flanking sequence: Indices 1815633 -- 1816132
AGCTCGCCAAGAAGTAGACCAGAATGCCGATGTTGAATTCCGTTGAGAAGCACTTTCGAAGTTCA
GTTCAGTCCGGCCTGGTTGTTTAAGTAGCTATCTCTTCTGTTTCCGTGGGTAGAGGTTCCCCTAG
GCTCATTGAGAACTTCCCAGTAAGTAGTCAGTCTTTTATGCACCAACGATATCTCTATAGTCCAC
TGATTGAGCCTCTCTCTTTGGCAGTGAGATTTCAGAAATAAATGATCATGATCCTCGAGAAAGTC
CCAAACGGATTCCCAGGCTTGAATGAAAACAAGGATATCACTCGAAACTCACGGTAGCTCAACCT
ATAAATAGCCTGATCGTTCCGTTCGCCTGCTATACTCAGTATACCCGCCCGACTACATGACCTTT
CTTCAAGGCGTAGGGGTTAGGCTTTTAAGGGAACAGGACGTAGTAGCTGAGGAAAGTTTCGTAGC
ATAGAAGAGTACGAAGTAGGTAATAAGATAGGCGAGCAGTAGACG
Right flanking sequence: Indices 1816191 -- 1816690
TTGGATAGCTGATAGCTCGGTGCTACTAATCTAACCAAGGTTGCGCGAAGTAGGATGCTGGTGCA
GGTGCACAGGAAGTAGATGCGTCTCCATCTCTATCCCCATTCCCTTTTACATCTCCTCTATATCC
TACAGTGAGAGACCGCCTAGGGGAACGAGGTAAGCAAATCATTATTGGGTATAGGACTTTACTGC
AGATATTGGGAAGAAGGATTCTATACTCTTCGATTGACAGCTCAGCCACCAACTCTCTCACTCAC
CAACTATTGAGACAGCAGCATTAGCAGCACAAAGAAGTCAAGGAAGATACTTGCGATCGAAAAGC
TCTTAGATAGGGGTCCTACCTCATGGAGTACAAGCCATTCTATAACATTCTAAGTTTCAATCCTC
TTTACTCCGGATCCATCTAACGAAAAAGGATCTTGACCACCTAAGTCAACCTTTTTTCACCTTTA
GACATGACATATACCTTCCTCTCTTTGATTTCGATTAGCGTTCTG
Found at i:1822038 original size:32 final size:32
Alignment explanation
Indices: 1822002--1822069 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
1821992 TTCATTTTCC
1822002 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
1 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
1822034 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
1 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
1822066 CTTA
1 CTTA
1822070 TTGTTCTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (32 bp):
CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
Left flanking sequence: Indices 1821502 -- 1822001
TCCGTGAGACCGCTAATTTAAATGATATCCAAGGAAGGATGGACCAAAGAAGAGGACTCTCGTAA
ATGGAAAAGCTCTTGCTCCTATAGTGCGTGCAATCAGTCGCCTATCTAGAAATACCCCTTGTCTC
CTAGTGAATCAGTCCTACTTTTGCTTCGTCCTCTCTGCCCACGTACAAGAGCACAACGTTCGATT
TCTCCTTTTCTTTCCGGTCGATAGGATTCCTTTCGAATAGTAAGCTTTTTAACTCCTGACCGATT
CTCTGGCCCTGCTCAACTTTCTACACGGCCGGGGAAACTGGGACAACAAATAAACGGGCAAACCC
GGAAAAGGAAAGACCAAAATCAATCTTCCTAATACTACGCAGGCCTTAAAGGATTACAACACTCT
AATGCTAACATGACCTTTTGAACTGGGGTTTACAGAAAATACCGGTCGCCTATAGAGCCTTCCCC
GTACCTTTCTCCATGCCCCTGTCGGCTTCCAAGGTTTCATTTTCC
Right flanking sequence: Indices 1822070 -- 1822569
TTGTTCTAAAATCTCATTGTATTGCTTAACAAGTAGCTCCTACAAACACTCCAGCTGGTGGGGTC
TATGCTCATCTAGGTCCTTTTGAAGCCCTAAAATACGTCTTTGTAGTTTCCTCTTTTTAACAAAG
AGATTTCCAAAAGTATATAGATTCCAGCTTCTCAAAACAGTAGTCAAAGCCGCACATTTAGCAAC
AACCGAGCCCTCTGTAGTCCCCCAACAATTCTGTACCAGACCTTTACAATCCTCATGAGCCATCC
ACATAGCTTGAAAACGGAATGGTCTCCTGCTCTTATCCGACACTAACTTCTCCTCACACTGAAGA
AGAATTGGGCAATGGTCGGAGTGTAACCGGGGGAGGTGCTTCACCGTAGCTTCCGTAAAAAGCGC
TCGCCAAGCAGCATTCGCAAGCACTCTATCCAAACGGACCTGGATTCTAGGAAGCCCTTGCCTTT
TTTTACACAAAGTAAAGGTAGGCCCTTGGTAACCCAAATCACTTA
Found at i:1824621 original size:19 final size:19
Alignment explanation
Indices: 1824597--1824637 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
1824587 AACTCACCTC
1824597 ATATAGTATGAATGAAGAT
1 ATATAGTATGAATGAAGAT
1824616 ATATAGTATGAATGAAGAT
1 ATATAGTATGAATGAAGAT
1824635 ATA
1 ATA
1824638 ATCATACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.32
Consensus pattern (19 bp):
ATATAGTATGAATGAAGAT
Left flanking sequence: Indices 1824097 -- 1824596
ACGATCACGAAGGGTGGGGGGATTATCACTGTTGGATTGGGTTAAGTGCAACAGCTTGTATAATG
GAAGGGATGCTCTTGATGATAGTTGGGGTATCCTCTTTGTTACTGCTCTATGGGGTTTGTTTAAG
GAATGGTGTTTTCTCACCCAACTAACTCTTTCTCATGATCCCTACAAAATAATAGGAAACAACCA
GAAGGAGGATAAGCTAAAAACTTTATTCCAGACTTGTGGTTTAAGGTACTCTCTCTTCGAACGCC
GCCTGGCTGGAGCCATCCCATTTTTTCTCGTGGTTGCAGATGAATGAGAGGTGTCCGTTGAGAAG
AACCGGGATTGGGATGATGTGTAAGCATTTGTTGGAAAGGGATGTCTGAGAGTCGATTTTGACAC
ATTTCCATGTGAAAAGTTGATAAGGTCGGTATGCTGCTCACTTTACTTTACGTTTGAACGATAAG
ACCTCGGCTTTTCTTCTATATGATTTTTCATAGAGAACTCACCTC
Right flanking sequence: Indices 1824638 -- 1825137
ATCATACTAAGGAACAGTTCGGTTCGGCTGTGTTGATCCTCATTCGTAAACTCCGGTCAAATCAG
AGATCTTTGCCTTTTTCCGAGTTTCCGAGTTTGACCGTTGTATGAGACTCACAAAATGACATTTT
ACATGATCTCGTATAGTGAAATTTGCTTTGGTTGGTTTTGCTCCCTTCCTTATTGGACTGGACTC
CAAGTTCACGATTTTTCATTAAATTTATTAGTGAGAAAGTAAGGTTTCACCGTAAGGTAAGGAGT
CTGTCTAACCCGGCTGCTGAGCTAGATGTTGAGCTACCTCCTTCTTGCCCAAGTAAGACAGAAGG
ATTGGAAGTCGAAGTCGTATCAGATGAAATTAATTCTTTCGCTTTTTCATTTGCTTTTCTGCTGA
ATCTGATTGAGTTGAATCCGTCCTTTCTTCTTTATGAAGTGAGGCGAAAGCGCTCTTAGTAAGGG
AAGAGGCTTGACTTTAGTACCTTCCGTCTCTTCTAGTCTGGTAAT
Done.