123.fas.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: KT894205
Parameters: 2 7 7 80 10 50 500
Length:  1829341

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 502 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1307923--1307954	16	2.0	16	100	0	64	31	25	18	25	1.98
1312175--1312224	25	2.0	25	100	0	100	32	20	16	32	1.94
1317778--1317828	26	2.0	25	92	3	84	33	27	17	21	1.96
1317989--1318036	24	2.0	24	100	0	96	41	16	16	25	1.89
1320327--1320361	17	2.1	17	100	0	70	25	17	0	57	1.40
1320662--1320696	17	2.0	18	88	5	54	54	8	20	17	1.68
1323007--1323045	19	2.1	19	100	0	78	38	20	5	35	1.75
1325586--1325650	31	2.1	31	100	0	130	12	23	18	46	1.82
1330488--1330544	29	2.0	29	100	0	114	15	28	10	45	1.79
1332593--1332638	23	2.0	23	100	0	92	13	26	8	52	1.69
1333476--1333517	21	2.0	21	100	0	84	42	14	33	9	1.78
1334316--1334353	18	2.1	18	100	0	76	31	21	21	26	1.98
1336934--1336976	21	2.0	21	100	0	86	23	18	13	44	1.86
1343711--1343763	26	2.0	26	100	0	106	39	15	18	26	1.90
1348424--1348473	23	2.2	23	96	3	93	30	22	18	30	1.97
1349225--1349274	25	2.0	25	100	0	100	12	36	16	36	1.85
1349823--1349863	20	2.0	20	100	0	82	51	9	24	14	1.72
1353855--1353901	23	2.0	24	95	4	87	51	6	25	17	1.69
1353978--1354023	22	2.1	22	100	0	92	13	17	21	47	1.81
1355132--1355180	24	2.0	24	100	0	98	30	20	8	40	1.81
1365424--1365471	24	2.0	24	100	0	96	33	8	16	41	1.78
1371081--1371125	22	2.0	22	100	0	90	26	22	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1373142--1373170	14	2.1	14	100	0	58	20	20	13	44	1.85
1393455--1393507	26	2.0	26	100	0	106	32	22	7	37	1.82
1395447--1395491	22	2.0	22	100	0	90	24	22	8	44	1.81
1410350--1410392	21	2.0	21	100	0	86	27	32	18	20	1.96
1410582--1410625	22	2.0	22	100	0	88	40	18	13	27	1.88
1410947--1410996	24	2.1	24	100	0	100	46	12	16	26	1.81
1411307--1411335	14	2.1	14	100	0	58	37	13	6	41	1.72
1414006--1414040	17	2.1	17	100	0	70	34	14	22	28	1.93
1416916--1416941	6	4.3	6	100	0	52	50	0	34	15	1.45
1422980--1423028	24	2.0	24	100	0	98	20	20	20	38	1.93
1423817--1423890	30	2.5	30	93	0	121	5	45	12	36	1.64
1423821--1423873	18	3.3	18	65	29	55	3	47	13	35	1.61
1423938--1423962	13	1.9	13	100	0	50	48	12	8	32	1.69
1425376--1425418	21	2.0	21	100	0	86	39	0	23	37	1.55
1425802--1425863	31	2.0	31	100	0	124	19	29	9	41	1.83
1430468--1430503	18	2.0	18	100	0	72	16	11	16	55	1.68
1430830--1430871	20	2.1	20	86	0	57	40	21	28	9	1.84
1433963--1433991	14	2.1	14	93	6	51	27	24	6	41	1.80
1436469--1436516	24	2.0	24	100	0	96	20	37	12	29	1.90
1436543--1436622	37	2.2	37	97	0	151	26	25	27	21	1.99
1436990--1437039	25	2.0	25	100	0	100	44	12	24	20	1.85
1439134--1439166	16	2.1	16	100	0	66	21	36	6	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439216--1439258	21	2.0	21	100	0	86	18	16	18	46	1.84
1441356--1441405	25	2.0	25	100	0	100	36	20	24	20	1.95
1449306--1449365	30	2.0	30	100	0	120	26	6	30	36	1.82
1458106--1458728	309	2.0	308	99	0	1228	30	27	18	24	1.98
1461560--1461611	25	2.1	25	100	0	104	30	11	19	38	1.87
1470208--1470253	22	2.1	22	100	0	92	26	19	13	41	1.88
1471577--1471620	22	2.0	22	100	0	88	18	27	9	45	1.79
1481179--1481211	15	2.2	15	94	0	57	39	21	15	24	1.91
1484973--1485013	19	2.2	19	100	0	82	39	19	9	31	1.84
1489448--1489493	15	3.1	15	100	0	92	54	6	13	26	1.62
1498452--1498482	14	2.2	14	100	0	62	41	0	12	45	1.42
1501354--1501401	22	2.2	22	100	0	96	14	31	8	45	1.74
1505814--1505847	17	2.0	17	100	0	68	41	5	11	41	1.66
1506042--1506091	25	2.0	25	100	0	100	16	20	8	56	1.65
1506737--1506791	27	2.0	27	100	0	110	32	29	16	21	1.95
1507620--1507677	29	2.0	29	100	0	116	27	13	10	48	1.75
1508516--1508556	20	2.0	20	100	0	82	39	14	29	17	1.89
1508906--1508942	18	2.1	18	100	0	74	40	32	5	21	1.76
1509296--1509370	25	3.0	25	92	0	114	20	22	20	37	1.94
1513749--1513784	18	2.0	18	100	0	72	38	22	11	27	1.88
1517405--1517465	21	2.9	21	95	0	113	11	29	11	47	1.75
1522501--1522550	25	2.0	25	96	0	91	8	28	22	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1526014--1526055	14	3.0	14	100	0	84	42	21	21	14	1.88
1532103--1532143	19	2.2	19	100	0	82	29	19	21	29	1.98
1535089--1535152	32	2.0	32	93	6	112	39	25	10	25	1.88
1536945--1536980	18	2.0	18	100	0	72	33	11	11	44	1.75
1545798--1545825	14	2.0	14	100	0	56	21	42	14	21	1.88
1546565--1546602	19	2.0	19	100	0	76	21	26	0	52	1.47
1548918--1548963	23	2.0	23	100	0	92	47	13	17	21	1.81
1553463--1553499	18	2.1	18	100	0	74	24	10	21	43	1.84
1555356--1555410	25	2.2	26	96	3	103	50	20	12	16	1.77
1557729--1557778	25	2.0	25	100	0	100	32	24	24	20	1.98
1558303--1558355	28	1.9	27	96	3	97	26	16	26	30	1.97
1559366--1559408	21	2.0	21	100	0	86	18	20	13	46	1.83
1560038--1560084	24	2.0	24	100	0	94	42	27	25	4	1.73
1560852--1560881	15	2.0	15	100	0	60	46	6	6	40	1.56
1565360--1565419	30	2.0	30	100	0	120	23	16	20	40	1.91
1569322--1569351	15	2.0	15	100	0	60	40	13	6	40	1.71
1571182--1571226	22	2.0	22	100	0	90	31	24	17	26	1.97
1571186--1571232	22	2.3	20	86	13	62	34	19	21	25	1.96
1571355--1571400	19	2.4	19	96	3	83	41	15	0	43	1.46
1575196--1575253	29	2.0	29	100	0	116	27	10	27	34	1.89
1579147--1579181	17	2.1	17	100	0	70	20	11	11	57	1.64
1580132--1580179	24	2.0	24	100	0	96	29	0	20	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1595471--1595505	17	2.1	17	100	0	70	34	31	17	17	1.93
1595474--1595509	17	2.2	16	90	9	56	33	30	16	19	1.94
1608662--1608705	22	2.0	22	100	0	88	13	13	27	45	1.81
1612111--1612171	20	3.0	20	97	0	113	14	16	21	47	1.82
1617489--1617524	17	2.1	17	100	0	72	41	33	5	19	1.75
1618247--1618288	20	2.1	20	100	0	84	61	4	9	23	1.45
1622175--1622216	21	2.0	21	100	0	84	28	19	19	33	1.96
1626156--1626181	13	2.0	13	100	0	52	38	30	23	7	1.83
1633353--1633386	17	2.0	17	100	0	68	35	5	29	29	1.81
1638871--1638909	19	2.1	19	100	0	78	10	20	15	53	1.70
1649628--1649681	18	3.0	18	100	0	108	22	22	11	44	1.84
1669014--1669051	19	2.0	19	100	0	76	26	10	21	42	1.85
1670025--1670080	29	1.9	29	100	0	112	32	10	21	35	1.88
1673659--1673716	29	2.0	29	100	0	116	41	13	13	31	1.84
1676107--1676142	18	2.0	18	100	0	72	27	22	11	38	1.88
1676599--1676633	17	2.1	17	100	0	70	37	5	17	40	1.73
1680817--1680847	15	2.1	15	100	0	62	35	12	0	51	1.40
1685377--1685415	19	2.1	19	100	0	78	48	15	20	15	1.81
1686656--1686701	23	2.0	23	100	0	92	39	21	17	21	1.93
1689992--1690030	15	2.6	15	100	0	78	28	20	0	51	1.48
1690590--1690643	27	2.0	27	100	0	108	22	11	33	33	1.89
1693447--1693506	29	2.1	29	100	0	120	40	16	20	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700157--1700204	24	2.0	24	100	0	96	33	12	16	37	1.86
1702174--1702209	18	2.0	18	100	0	72	44	11	11	33	1.75
1707263--1707311	24	2.0	24	100	0	98	34	20	20	24	1.96
1709136--1709177	21	2.0	21	95	0	75	30	11	19	38	1.88
1715005--1715047	21	2.0	21	100	0	86	23	18	18	39	1.92
1717988--1718047	30	2.0	30	100	0	120	33	30	16	20	1.94
1721268--1721318	25	2.0	25	100	0	102	19	31	13	35	1.91
1721420--1721483	32	2.0	32	100	0	128	18	40	9	31	1.83
1730993--1731039	23	2.0	23	100	0	94	21	17	8	53	1.70
1731435--1731476	21	2.0	21	100	0	84	28	19	19	33	1.96

Tables:   1   2   3   4   5