123.fas.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: KT894205
Parameters: 2 7 7 80 10 50 500
Length:  1829341

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 502 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
839010--839035	13	2.0	13	100	0	52	38	7	30	23	1.83
841707--841741	17	2.1	17	100	0	70	54	17	17	11	1.71
849617--849656	20	2.0	20	100	0	80	40	15	10	35	1.80
853311--853370	30	2.0	30	100	0	120	30	16	23	30	1.96
854194--854250	19	3.0	19	100	0	114	42	15	21	21	1.89
855634--855672	19	2.1	19	100	0	78	53	5	20	20	1.64
867479--867522	17	2.6	17	100	0	88	6	11	25	56	1.58
872159--872200	21	2.0	21	100	0	84	23	28	9	38	1.86
878046--878078	16	2.1	16	100	0	66	42	6	6	45	1.53
878289--878318	15	2.0	15	100	0	60	26	20	26	26	1.99
878614--878659	23	2.0	23	100	0	92	39	21	0	39	1.54
879177--879238	31	2.0	31	96	0	115	35	33	9	20	1.86
888618--888656	19	2.1	19	100	0	78	25	33	30	10	1.89
889306--889341	16	2.2	16	90	0	54	55	2	8	33	1.44
893194--893239	23	2.0	23	100	0	92	21	17	21	39	1.93
896093--896134	21	2.0	21	100	0	84	57	9	19	14	1.64
907848--907897	25	2.0	25	100	0	100	24	12	28	36	1.91
908739--908778	20	2.0	20	100	0	80	50	5	15	30	1.65
914234--914291	25	2.3	25	100	0	116	43	20	10	25	1.84
916570--916623	27	2.0	27	100	0	108	22	22	7	48	1.75
917440--917486	23	2.0	23	100	0	94	17	21	34	27	1.95
925723--925772	25	2.0	25	100	0	100	36	8	28	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927686--927734	24	2.0	24	100	0	98	44	8	34	12	1.71
933935--933978	24	1.9	22	100	0	70	36	9	15	38	1.80
936490--936541	26	2.0	26	100	0	104	26	19	19	34	1.95
937183--937219	16	2.2	17	90	4	58	32	21	24	21	1.98
937426--937491	10	5.8	10	75	25	60	31	4	60	3	1.32
937414--937491	38	2.1	38	100	0	156	30	7	56	5	1.49
941808--941855	24	2.0	24	100	0	96	25	20	8	45	1.79
945711--945753	21	2.0	21	100	0	86	30	18	13	37	1.90
948198--948235	20	1.9	20	100	0	76	21	23	18	36	1.95
958384--958420	18	2.1	18	94	0	65	37	18	13	29	1.90
961965--962004	20	2.0	20	100	0	80	55	10	20	15	1.68
971747--971788	21	2.0	21	100	0	84	57	9	9	23	1.60
972698--972757	30	2.0	30	100	0	120	33	20	16	30	1.94
983634--983673	20	2.0	20	100	0	80	20	10	25	45	1.81
988369--988415	23	2.0	23	100	0	94	21	12	8	57	1.62
1001074--1001123	24	2.1	24	100	0	100	24	36	16	24	1.94
1027536--1027580	22	2.0	22	100	0	90	35	8	13	42	1.75
1028524--1028577	27	2.0	27	100	0	108	29	18	29	22	1.97
1032893--1032926	17	2.0	17	100	0	68	23	23	17	35	1.95
1044713--1044770	29	2.0	29	100	0	116	24	10	27	37	1.88
1044776--1044845	35	2.0	35	100	0	140	40	11	17	31	1.85
1048837--1048893	28	2.0	28	100	0	114	35	14	26	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057629--1057674	23	2.0	23	100	0	92	21	26	13	39	1.90
1058557--1058594	19	2.0	19	100	0	76	36	10	21	31	1.87
1064078--1064119	21	2.0	21	100	0	84	38	4	28	28	1.77
1066095--1066147	27	2.0	27	100	0	106	22	18	7	50	1.72
1070331--1070377	23	2.0	23	100	0	94	46	21	10	21	1.81
1071707--1071738	16	2.0	16	100	0	64	25	12	18	43	1.85
1075884--1075938	27	2.0	27	100	0	110	14	29	9	47	1.75
1079976--1080027	26	2.0	26	100	0	104	15	30	34	19	1.93
1084606--1084635	15	2.0	15	100	0	60	6	33	20	40	1.78
1086039--1086086	23	2.1	23	100	0	96	22	14	25	37	1.92
1090522--1090571	25	2.0	25	100	0	100	36	16	20	28	1.93
1093370--1093426	19	3.0	19	100	0	114	42	5	21	31	1.75
1096695--1096734	19	2.1	19	95	0	71	32	22	25	20	1.98
1098377--1098401	13	1.9	13	100	0	50	48	4	16	32	1.64
1099585--1099637	26	2.0	26	100	0	106	18	30	24	26	1.98
1103275--1103320	23	2.0	23	100	0	92	30	21	17	30	1.96
1104282--1104329	24	2.0	24	100	0	96	50	8	16	25	1.73
1106903--1106949	22	2.1	22	100	0	94	29	23	12	34	1.92
1109030--1109079	25	2.0	25	100	0	100	48	16	16	20	1.82
1111624--1111664	20	2.0	20	100	0	82	41	9	9	39	1.71
1111776--1111823	24	2.0	24	100	0	96	37	25	16	20	1.93
1115812--1115858	22	2.1	22	100	0	94	17	27	4	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119388--1119415	14	2.0	14	100	0	56	14	21	21	42	1.88
1120167--1120206	19	2.1	19	100	0	80	32	15	10	42	1.79
1122227--1122290	32	2.0	32	100	0	128	21	25	21	31	1.98
1123811--1123857	24	2.0	24	100	0	94	17	21	17	44	1.86
1123813--1123871	24	2.6	23	86	10	68	18	23	16	40	1.91
1125302--1125366	32	2.0	32	100	0	130	33	12	23	30	1.91
1131049--1131082	17	2.0	17	100	0	68	52	0	23	23	1.47
1134884--1134923	20	2.0	20	100	0	80	40	35	5	20	1.74
1140315--1140358	22	2.0	22	100	0	88	31	13	27	27	1.94
1146639--1146674	11	3.3	11	100	0	72	36	27	16	19	1.93
1155959--1156008	24	2.1	24	96	0	91	26	36	14	24	1.93
1158590--1158624	9	3.9	9	96	0	61	40	34	2	22	1.69
1160275--1160312	19	2.0	19	100	0	76	15	15	21	47	1.82
1163324--1163369	22	2.1	22	100	0	92	36	13	17	32	1.88
1167152--1167210	30	2.0	29	96	0	100	16	20	45	15	1.83
1167253--1167303	25	2.0	25	96	0	93	43	7	13	35	1.73
1171255--1171310	28	2.0	28	100	0	112	32	14	21	32	1.93
1174233--1174260	13	2.2	13	100	0	56	14	21	25	39	1.91
1174528--1174575	24	2.0	24	91	0	78	18	25	22	33	1.97
1187037--1187080	22	2.0	22	100	0	88	50	13	9	27	1.72
1187777--1187826	24	2.1	24	100	0	100	16	24	8	52	1.70
1188698--1188724	13	2.1	13	100	0	54	55	0	22	22	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1192233--1192279	23	2.0	23	100	0	94	14	21	17	46	1.83
1196328--1196362	17	2.1	17	88	0	52	62	0	17	20	1.32
1197256--1197317	31	2.0	31	100	0	124	12	12	22	51	1.74
1198828--1198879	26	2.0	26	100	0	104	23	26	11	38	1.89
1199473--1199520	24	2.0	24	100	0	96	25	12	20	41	1.87
1200865--1200914	11	5.0	10	77	15	50	18	18	4	60	1.52
1202500--1202551	26	2.0	26	100	0	104	34	7	19	38	1.80
1212939--1212983	21	2.1	21	100	0	90	37	4	35	22	1.74
1217934--1217977	22	2.0	22	90	0	70	25	27	20	27	1.99
1221818--1221851	17	2.0	17	94	0	59	26	23	8	41	1.83
1223239--1223288	25	2.0	25	100	0	100	28	8	20	44	1.79
1224608--1224657	15	3.3	15	71	0	55	14	44	8	34	1.74
1224599--1224665	30	2.2	30	86	0	107	13	46	5	34	1.68
1226759--1226802	19	2.3	19	100	0	88	40	4	25	29	1.75
1227666--1227694	14	2.1	14	100	0	58	13	13	6	65	1.45
1242070--1242110	20	2.0	20	100	0	82	43	4	9	41	1.59
1245378--1245402	13	1.9	13	100	0	50	8	32	32	28	1.86
1250792--1250836	22	2.0	22	100	0	90	13	22	17	46	1.83
1256554--1256595	21	2.0	21	100	0	84	42	14	28	14	1.84
1257684--1257723	20	2.0	20	100	0	80	15	15	25	45	1.84
1260368--1260429	30	2.1	30	100	0	124	16	41	6	35	1.74
1260588--1260638	24	2.1	24	100	0	102	41	11	19	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1263138--1263191	27	2.0	27	100	0	108	22	14	29	33	1.94
1264220--1264275	28	2.0	28	100	0	112	42	14	35	7	1.73
1267763--1267817	28	2.0	28	96	0	101	10	41	5	41	1.63
1272320--1272381	31	2.0	31	100	0	124	19	29	16	35	1.93
1287323--1287360	19	2.0	19	100	0	76	42	15	15	26	1.87
1289487--1289531	22	2.0	22	95	0	81	46	4	15	33	1.66
1291542--1291592	25	2.0	25	96	0	93	33	13	9	43	1.77
1291777--1291816	19	2.1	19	95	0	71	40	17	22	20	1.92
1302232--1302277	23	2.0	22	91	4	74	21	13	0	65	1.26
1304135--1304191	19	3.0	19	97	0	105	24	21	15	38	1.92

Tables:   1   2   3   4   5