123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: KT894205
Parameters: 2 7 7 80 10 50 500
Length:  1829341

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 502 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434114--434168	27	2.0	27	100	0	110	7	25	12	54	1.63
442907--442936	16	1.9	15	93	6	51	36	36	20	6	1.79
444079--444123	21	2.1	21	100	0	90	31	6	26	35	1.82
444924--444965	22	1.9	22	100	0	84	19	26	4	50	1.67
454944--454980	18	2.1	18	100	0	74	13	27	5	54	1.61
455859--455895	18	2.1	18	100	0	74	37	0	21	40	1.54
464545--464588	22	2.0	22	100	0	88	40	9	31	18	1.81
465284--465354	31	2.3	31	97	0	133	30	14	33	21	1.92
465666--465715	25	2.0	25	96	0	91	22	24	6	48	1.73
466204--466241	19	2.0	19	100	0	76	26	21	0	52	1.47
466209--466253	19	2.4	19	84	0	54	26	22	6	44	1.77
470327--470377	17	3.0	17	100	0	102	29	11	23	35	1.90
472848--472883	18	2.0	18	100	0	72	27	22	16	33	1.95
511403--511447	22	2.0	22	100	0	90	24	35	8	31	1.86
511453--511478	13	2.0	13	100	0	52	15	30	23	30	1.95
512945--512988	21	2.1	21	100	0	88	34	18	13	34	1.90
517223--517255	16	2.1	16	100	0	66	18	30	0	51	1.46
519598--519642	22	2.0	22	100	0	90	37	26	8	26	1.86
519601--519649	22	2.4	20	90	10	73	40	24	8	26	1.83
520105--520144	20	2.0	20	95	0	71	27	25	7	40	1.82
520765--520825	20	3.0	20	95	0	113	21	16	18	44	1.87
527151--527193	21	2.0	21	100	0	86	27	23	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529493--529527	17	2.1	17	100	0	70	48	17	5	28	1.69
530972--531011	20	2.0	20	95	0	71	30	22	32	15	1.94
534845--534888	22	2.0	22	100	0	88	36	9	36	18	1.82
538289--538326	19	2.0	19	100	0	76	47	21	15	15	1.82
538810--538861	26	2.0	26	96	0	95	44	17	11	26	1.83
550914--550981	34	2.0	34	97	0	127	20	22	14	42	1.88
550915--550995	34	2.4	33	87	8	101	20	19	18	40	1.91
560554--560596	21	2.0	21	95	0	77	30	13	11	44	1.80
562912--562947	18	2.0	18	100	0	72	11	22	22	44	1.84
564389--564436	24	2.0	24	100	0	96	37	4	29	29	1.76
571034--571077	21	2.1	21	91	0	70	31	25	0	43	1.55
571858--571892	18	1.9	18	94	0	61	11	14	20	54	1.70
573870--573905	18	2.0	18	89	10	56	25	25	16	33	1.96
575065--575118	27	2.0	27	100	0	108	18	33	3	44	1.67
575988--576034	23	2.0	23	95	0	85	25	14	10	48	1.76
576337--576378	21	2.0	21	100	0	84	38	9	23	28	1.86
581179--581207	12	2.3	13	94	5	51	48	13	3	34	1.60
582477--582522	22	2.1	22	100	0	92	30	0	13	56	1.37
585051--585150	20	5.0	20	100	0	200	15	25	5	55	1.60
586201--586232	16	2.0	16	100	0	64	31	18	6	43	1.75
586372--586396	13	1.9	13	100	0	50	72	8	4	16	1.24
586420--586454	17	2.1	17	94	0	61	57	11	8	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587113--587166	15	3.7	15	82	7	58	27	1	3	66	1.19
587140--587169	14	2.1	14	100	0	60	30	0	6	63	1.20
587144--587178	14	2.5	14	90	0	52	34	0	5	60	1.21
587719--587959	121	2.0	120	100	0	473	33	20	19	25	1.97
589970--590026	19	3.4	19	64	31	56	52	7	5	35	1.51
589969--590030	31	2.0	31	100	0	124	51	6	6	35	1.53
591411--591500	21	4.3	21	100	0	180	45	4	8	41	1.55
591411--591518	42	2.6	42	92	2	155	46	4	7	41	1.52
591539--591585	19	2.4	20	96	3	87	57	0	0	42	0.98
591563--591601	12	3.3	12	85	3	53	64	0	0	35	0.94
592234--592264	14	2.2	14	100	0	62	41	22	6	29	1.78
592284--592308	12	2.1	12	100	0	50	40	20	16	24	1.91
592686--592714	12	2.3	13	94	5	51	48	13	3	34	1.60
593227--593264	19	2.0	19	100	0	76	42	21	15	21	1.89
598145--598189	22	2.0	22	100	0	90	26	17	28	26	1.98
603649--603699	25	2.0	25	100	0	102	35	23	17	23	1.95
604256--604297	21	2.0	21	100	0	84	33	19	19	28	1.96
606170--606203	17	2.0	17	100	0	68	52	17	11	17	1.73
609173--609214	19	2.2	19	100	0	84	50	4	30	14	1.63
612914--612971	30	1.9	30	100	0	116	32	12	6	48	1.67
613470--613509	20	2.0	20	100	0	80	30	15	30	25	1.95
613647--613709	31	2.0	31	100	0	126	25	20	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619284--619440	71	2.2	73	78	11	180	40	15	17	27	1.89
620907--620942	18	2.0	18	100	0	72	27	5	22	44	1.75
625300--625343	22	2.0	22	100	0	88	18	31	13	36	1.90
627952--628007	19	2.9	19	100	0	112	25	37	10	26	1.88
638836--638861	12	2.2	12	100	0	52	23	0	42	34	1.54
643515--643569	27	2.0	27	100	0	110	36	25	10	27	1.89
644345--644384	20	2.0	20	100	0	80	40	15	15	30	1.87
651818--651875	29	2.2	26	87	12	82	27	25	10	36	1.89
661779--661810	16	2.0	16	100	0	64	56	0	18	25	1.42
664434--664495	31	2.0	31	100	0	124	29	16	19	35	1.93
666004--666057	27	2.0	27	100	0	108	18	33	14	33	1.92
668508--668557	25	2.0	25	100	0	100	32	8	16	44	1.76
669947--669995	23	2.1	23	100	0	98	38	12	8	40	1.72
673817--673897	27	3.0	27	100	0	162	29	18	18	33	1.95
674622--674663	21	2.0	21	100	0	84	19	23	28	28	1.98
675617--675646	16	1.9	15	93	6	51	46	3	6	43	1.46
677459--677486	14	2.0	14	100	0	56	35	14	7	42	1.73
681219--681253	17	2.1	17	100	0	70	54	11	5	28	1.59
681520--681561	20	2.1	20	100	0	84	26	19	30	23	1.98
682238--682291	26	2.1	26	100	0	108	31	14	18	35	1.91
684470--684522	26	2.0	26	100	0	106	7	13	18	60	1.56
684478--684533	26	2.2	26	87	6	78	10	8	19	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689449--689497	25	2.0	25	100	0	98	40	22	16	20	1.91
689953--690003	25	2.0	25	96	0	93	23	11	25	39	1.89
690162--690197	16	2.2	16	100	0	72	16	5	19	58	1.58
702357--702381	13	1.9	13	100	0	50	64	16	12	8	1.49
702810--702861	25	2.1	25	100	0	104	23	50	7	19	1.73
711226--711261	18	2.0	18	100	0	72	38	27	11	22	1.88
716526--716572	22	2.1	22	100	0	94	53	17	25	4	1.62
727553--727584	16	2.0	16	100	0	64	37	0	12	50	1.41
729006--729059	25	2.2	25	100	0	108	35	7	16	40	1.77
729628--729675	24	2.0	24	100	0	96	37	8	33	20	1.83
730900--730942	21	2.0	21	100	0	86	44	9	23	23	1.82
734195--734244	25	2.0	25	100	0	100	20	20	16	44	1.87
741044--741093	26	1.9	26	100	0	100	46	20	16	18	1.85
743873--743915	21	2.0	21	100	0	86	13	9	9	67	1.42
743869--743916	21	2.5	18	81	18	53	14	10	8	66	1.43
745798--745823	11	2.4	11	100	0	52	15	23	0	61	1.33
752239--752284	22	2.1	22	100	0	92	39	4	30	26	1.75
753968--754015	25	1.9	25	100	0	96	35	12	14	37	1.84
757445--757495	25	2.0	25	100	0	102	11	31	7	49	1.68
757591--757617	12	2.2	12	100	0	54	25	22	11	40	1.87
763524--763573	25	2.0	25	100	0	100	24	32	8	36	1.84
771909--771948	20	2.0	20	100	0	80	45	10	15	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772830--772877	24	2.0	24	100	0	96	45	12	29	12	1.78
781219--781270	26	2.0	26	100	0	104	19	23	23	34	1.96
787851--787894	22	2.0	22	100	0	88	54	18	4	22	1.61
791043--791079	17	2.2	17	100	0	74	37	0	16	45	1.47
795656--795715	30	2.0	30	100	0	120	30	13	30	26	1.94
796967--797010	22	2.0	22	100	0	88	31	22	4	40	1.74
812587--812628	20	2.1	20	100	0	84	42	9	19	28	1.82
817946--817974	14	2.1	14	100	0	58	37	13	13	34	1.85
826595--826644	25	2.0	25	100	0	100	24	24	20	32	1.98
828600--828635	18	2.0	18	100	0	72	55	11	11	22	1.66

Tables:   1   2   3   4   5