123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: KT894205
Parameters: 2 7 7 80 10 50 500
Length:  1829341

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 502 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660--716	29	2.0	29	100	0	114	43	3	17	35	1.66
6985--7031	23	2.0	23	100	0	94	44	17	17	21	1.86
15387--15430	20	2.2	20	100	0	88	47	18	15	18	1.83
19013--19055	19	2.3	19	96	4	79	34	16	13	34	1.88
20340--20389	25	2.0	25	100	0	100	36	16	16	32	1.90
23383--23424	21	2.0	21	95	0	75	33	16	30	19	1.94
23974--24025	26	2.0	26	100	0	104	34	15	19	30	1.93
24100--24139	20	2.0	20	100	0	80	40	10	30	20	1.85
24787--24829	22	2.0	22	100	0	86	27	23	20	27	1.99
28636--28671	15	2.4	15	90	0	54	19	30	13	36	1.91
29281--29321	20	2.0	20	100	0	82	19	19	9	51	1.74
29671--29732	31	2.0	31	100	0	124	32	32	6	29	1.83
31517--31571	23	2.5	23	94	5	96	40	27	18	14	1.89
36353--36409	19	3.0	19	100	0	114	26	15	15	42	1.87
37603--37656	18	3.0	18	100	0	108	5	22	0	72	1.05
38021--38071	17	3.0	17	100	0	102	52	5	23	17	1.66
40759--40824	33	2.0	33	100	0	132	15	39	6	39	1.72
41105--41162	29	2.0	29	96	0	107	36	10	15	37	1.82
41458--41516	29	2.0	29	100	0	118	27	13	20	38	1.90
41905--41962	30	1.9	30	100	0	116	36	15	24	24	1.94
43293--43342	24	2.1	24	100	0	100	24	30	14	32	1.94
46409--46460	26	2.0	26	100	0	104	23	19	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49329--49358	15	2.0	15	100	0	60	46	13	0	40	1.43
59731--59781	25	2.0	25	100	0	102	35	7	31	25	1.85
69343--69394	26	2.0	26	96	0	95	50	11	28	9	1.70
71347--71407	20	3.0	20	95	0	113	36	9	22	31	1.87
71529--71580	26	2.0	26	96	0	95	42	7	21	28	1.80
72209--72249	20	2.0	20	100	0	82	31	19	19	29	1.96
72406--72467	31	2.0	31	100	0	124	19	19	19	41	1.90
78343--78384	21	2.0	21	100	0	84	38	19	14	28	1.90
79255--79292	16	2.4	16	95	0	67	23	15	42	18	1.89
81410--81443	17	2.0	17	100	0	68	41	17	17	23	1.90
83516--83567	26	2.0	26	100	0	104	30	11	19	38	1.87
92615--92684	17	4.1	17	100	0	140	41	12	28	17	1.86
104456--104511	28	2.0	28	100	0	112	42	25	7	25	1.80
105607--105655	24	2.0	24	100	0	98	36	12	26	24	1.91
120100--120164	32	2.0	32	100	0	130	24	21	18	35	1.96
129888--129951	29	2.2	29	97	0	119	35	9	28	26	1.87
131303--131337	17	2.1	17	100	0	70	31	5	28	34	1.81
140401--140430	15	2.0	15	93	0	51	20	20	23	36	1.95
140548--140597	25	2.0	25	96	0	91	30	16	26	28	1.96
147243--147293	15	3.5	15	74	15	61	50	13	13	21	1.76
147234--147292	29	2.0	29	100	0	118	52	13	10	23	1.71
154763--154804	21	2.0	21	100	0	84	42	9	23	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161339--161383	22	2.0	22	100	0	90	37	26	8	26	1.86
162168--162202	16	2.2	16	100	0	70	45	8	17	28	1.77
164177--164220	21	2.1	21	100	0	88	27	34	9	29	1.87
166175--166220	23	2.0	23	100	0	92	13	13	21	52	1.73
166420--166462	23	1.9	22	100	0	77	39	9	25	25	1.85
169486--169532	22	2.1	22	100	0	94	59	4	25	10	1.49
172078--172105	13	2.2	13	100	0	56	7	21	14	57	1.61
179022--179074	26	2.0	26	100	0	106	43	11	11	33	1.76
180560--180598	18	2.2	18	100	0	78	15	20	10	53	1.70
181142--181182	20	2.0	20	100	0	82	68	0	9	21	1.18
187137--187194	29	2.0	29	96	0	107	32	20	12	34	1.90
189840--189882	20	2.2	20	100	0	86	53	6	18	20	1.67
197494--197522	15	1.9	15	100	0	58	44	27	20	6	1.77
205265--205309	15	3.0	15	100	0	90	40	6	26	26	1.81
213961--214149	95	2.0	94	100	0	369	29	27	22	20	1.98
214766--214820	28	2.0	28	100	0	110	32	14	14	38	1.87
216861--216918	29	2.0	29	100	0	116	51	13	3	31	1.58
237450--237500	25	2.0	25	100	0	102	39	11	11	37	1.79
237851--237901	23	2.2	23	96	0	93	29	15	15	39	1.89
238699--238750	17	3.1	17	100	0	104	23	11	23	42	1.86
241767--241840	37	2.0	37	100	0	148	16	35	16	32	1.91
254813--254854	21	2.0	21	95	0	75	35	30	19	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255451--255502	25	2.1	25	100	0	104	19	19	9	51	1.73
258908--258956	24	2.0	24	100	0	98	20	16	12	51	1.76
263452--263514	27	2.3	27	97	0	117	12	34	17	34	1.88
269662--269733	36	2.0	36	100	0	144	41	25	27	5	1.77
280748--280794	13	3.1	16	76	20	55	48	10	14	25	1.76
280745--280794	17	3.2	17	75	21	54	50	10	14	26	1.73
284069--284109	20	2.0	20	100	0	82	34	14	36	14	1.87
287948--287982	17	2.0	18	88	5	54	31	8	11	48	1.69
291699--291729	15	2.1	15	100	0	62	48	19	19	12	1.81
294104--294133	15	2.0	15	100	0	60	26	13	26	33	1.93
295994--296049	28	2.0	28	100	0	112	39	14	17	28	1.89
298885--298940	17	3.3	17	97	0	103	37	10	23	28	1.88
301823--301859	18	2.1	18	89	0	56	10	13	13	62	1.55
302828--302862	18	2.0	17	88	5	52	17	20	14	48	1.81
306404--306446	21	2.0	21	100	0	86	51	23	0	25	1.49
306991--307019	14	2.1	14	100	0	58	13	13	20	51	1.75
307551--307600	25	2.0	25	100	0	100	28	16	32	24	1.96
311020--311048	14	2.1	14	93	6	51	27	24	6	41	1.80
314023--314063	19	2.2	19	100	0	82	19	19	19	41	1.91
316606--316647	21	2.0	21	100	0	84	33	19	19	28	1.96
322379--322408	15	2.0	15	100	0	60	33	20	20	26	1.97
324456--324501	23	2.0	23	100	0	92	13	26	21	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328634--328677	22	2.0	22	100	0	88	27	9	22	40	1.84
334229--334263	17	2.1	17	100	0	70	71	5	17	5	1.25
336195--336254	30	2.0	30	100	0	120	33	6	33	26	1.83
341002--341036	14	2.3	16	85	14	56	65	2	5	25	1.28
344107--344146	20	2.0	20	100	0	80	40	10	20	30	1.85
345865--345892	14	2.0	14	100	0	56	35	21	7	35	1.81
346519--346563	22	2.0	22	100	0	90	42	13	31	13	1.82
346988--347044	19	3.0	19	100	0	114	15	21	10	52	1.72
348203--348246	22	2.0	22	100	0	88	18	36	9	36	1.82
348441--348513	30	2.4	30	95	0	128	41	15	28	15	1.87
348881--348924	22	2.0	22	100	0	88	27	18	31	22	1.97
351819--351876	29	2.0	29	93	0	98	27	10	32	29	1.90
352782--352824	21	2.0	21	95	0	77	41	25	11	20	1.86
359301--359339	19	2.1	19	100	0	78	30	15	5	48	1.66
359984--360031	24	2.0	24	100	0	96	41	16	25	16	1.89
362786--362828	21	2.0	21	100	0	86	46	13	20	18	1.83
364317--364352	18	2.0	18	100	0	72	44	0	27	27	1.55
366545--366609	30	2.2	30	88	0	94	35	12	46	6	1.66
366602--366645	22	2.0	22	100	0	88	27	9	31	31	1.88
367621--367658	18	2.1	18	100	0	76	39	0	10	50	1.37
372261--372296	18	2.0	18	100	0	72	61	16	5	16	1.53
386777--386820	22	2.0	22	100	0	88	22	13	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386945--386988	21	2.1	21	100	0	88	38	27	11	22	1.88
391382--391427	23	2.0	23	100	0	92	17	13	17	52	1.75
395158--395201	22	2.0	22	100	0	88	40	18	4	36	1.71
402623--402680	27	2.1	27	100	0	116	29	6	34	29	1.83
413357--413414	29	2.0	29	100	0	116	20	24	24	31	1.98
414144--414174	15	2.1	15	93	0	53	41	0	35	22	1.54
424791--424848	29	2.0	29	100	0	116	27	13	17	41	1.87
425586--425637	25	2.1	25	100	0	104	30	23	15	30	1.95
430540--430575	18	2.0	18	100	0	72	33	22	11	33	1.89
431982--432010	15	1.9	15	100	0	58	20	0	31	48	1.50

Tables:   1   2   3   4   5