Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KT894204
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1999602
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Warning! 7 characters in sequence are not A, C, G, or T
Found at i:6102 original size:20 final size:20
Alignment explanation
Indices: 6077--6117 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
6067 GTCAAGCAGC
6077 ATTCTATTGTCTAGAATTTG
1 ATTCTATTGTCTAGAATTTG
6097 ATTCTATTGTCTAGAATTTG
1 ATTCTATTGTCTAGAATTTG
6117 A
1 A
6118 GTGATGCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.49
Consensus pattern (20 bp):
ATTCTATTGTCTAGAATTTG
Left flanking sequence: Indices 5577 -- 6076
ATTCTGATATTAAGATTCGATATAGATGAAATCGTGGAAGCGGACCTTTGATTTCCTTGGACCAC
ATAAGAATTCGTCGTCCGATTGAATCTTCTTGTTCTTGGATGCTCCATAGGTCTTGAAGAGCGTA
AAGCACTAATGCGGAAGAGCAGACGTAAAGCACTAATCCTTTCACCCACCTTCCACCAACAGTGG
ATTTGAAAGCGCGGTCTCTCAATGCCTCGTACGTGTAATAGGGAAATCATCCAATTCGCCAGGCC
TTTACTTGAGCTTCTAGCACCGATATCTCATCTCAACTCATCATTCATCAAAGAGGAAGGCAAAG
GCCTTAAAATCTTACTCTGCCCCGCTTGTTCTTCCTGGATACGATAATGGGGAAGGGAAGTCTTT
ACTTCGGTTACTCAACCAGATTAATCGGACTCTTTCTTAAGAAGGGAAGGAAATGCGTATGGTGA
GATCGAGTGGTGAGCTTTCGGTGCATGGCTAAAAGGTCAAGCAGC
Right flanking sequence: Indices 6118 -- 6617
GTGATGCATCTATCTATACAAGAGCGTAAAGCAAGTCGAAGATCAATACCGGGCCATGATGCTCT
ATCTTCCGACCCCGTTAGTCTATGCCTTGGCTGTTATGAGTGAGAGCACCCAACTAAGTAAAGAG
AGAAAGCAATACTCATTCCAAACAGATAGATTCCCAGTTCAATTCAATGAACTACTTCTATTATG
ATATTTCTAGTTTGATCGAGAAAGAAACCGTAGAACTCTCAGACTATGGCACCGTAAAAGGAAGC
AGTAATAGCTCTATCCTTTTGAAACCTTGAGTAAGAGGCGTAGGGGTTTAAGTAAGGTACTATCT
CTTCTGTTTCCTTTGCTATGGGGTATTCCGACTTGTACCCCTTTTATGGATATGCCTGAGAAGTT
GGAGTTTCAGTTACGTCCTTCTTACATGAGAGAGGGGGCTACTTAATATAGCACACGAGCGTTTA
AAGAGGAGCAATTGGAGCTTCCTCGATTCTATCTTCGCCAGAGAG
Found at i:18008 original size:13 final size:13
Alignment explanation
Indices: 17990--18015 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17980 ATAATCCTAT
17990 CCAGAAATGCGCA
1 CCAGAAATGCGCA
18003 CCAGAAATGCGCA
1 CCAGAAATGCGCA
18016 TTCAATTCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.23, T:0.08
Consensus pattern (13 bp):
CCAGAAATGCGCA
Left flanking sequence: Indices 17490 -- 17989
TGGGGATTTAGAGTTGCATAAGGATTGGAGGTTTCACCTGCTCGGATCTGGGTTTGTCGACCCGA
AACAGATACTAATCCTTTTCTCCTGAGCTTTCGAAAACAGTAGTTTCGGCAAACGTACTATGCTC
TGAACCGTCTACTTGGCCCCTAACCCCTAAGCGGTGGCCTTCATAGAAATCTACTTGCTCTGGCC
TTACTACTCGAGACAGACCGAAGTCAAGTCAAGAGCACAGGCAAGGAAGCGAAACCGATCGTACT
AGAAAAGCCCTATTGACGTTTCTATGATCATCTATGGAAATTGAAACTAGGGTTTTTAGTGCTTT
TATTGCTTCTTTTTGAAAACAGCTAGAGGACTGATAGTTAAAGCGCTTCTTCCCTGGCCCTTACC
TGAGAATAGCAAGACTGAACACTGACCCAATCAGCAGCTCTGTTAGCTGTTCGATGAACCAATGG
TGTGTGGAACTCTCCAATGCTCCATCTATCGGTCGATAATCCTAT
Right flanking sequence: Indices 18016 -- 18515
TTCAATTCGCCATTCTATACAAAAAATACTAGGTGTTACCGGTATGTATGTTTACAGTGTCGAGT
ATAACATGGCAGTTTCCTAATGGGTTGGGGATGTCTTCTTGTTTTATTGATGAGGAGGAATAGTT
ATTGGAGTCCTCAAACCCCAGTCTCAAACTAAACCGATGAAATTCATTTTCTTGGTGGTAAGCTT
TTGAGTAGGATTTTTGTTACGAAGCCTATCATTCCTTGTCTTCTGGTTGTGCTTCATCCCCCAGT
CTTGTTAATTGCTGGTATAAGGAAGGGGCATAAGCTAAGCCCCGAGATCTTTGCTATTTGTGCGG
GTAACTAAGGCTCTCCCCTTATCTGCCTAGAACCATCTCACAACTCGTGAGCTTCCCCTTGAACA
GCTAGAAAGCTCAAGGAAAGGAATGCCTGCTCGAACGCTAGAGAAGAGCAACGATTTATTCCTCT
GCTTGAGCTGGACTAGTACTCGGAAGAAAGACAAAACCTAGAACA
Found at i:41214 original size:16 final size:16
Alignment explanation
Indices: 41177--41206 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41167 TGGCTTTGAT
41177 TGTC-TGCTAGCGGTG
1 TGTCTTGCTAGCGGTG
41192 TGTCTTGCTAGCGGT
1 TGTCTTGCTAGCGGT
41207 ATTGCTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.20, G:0.37, T:0.37
Consensus pattern (16 bp):
TGTCTTGCTAGCGGTG
Left flanking sequence: Indices 40677 -- 41176
CAGAGGGGGAAAAGTAACTCGGGGGTAGAGATACAAGCACTAGGAAGAAGGGAAAGCTTTTCATA
AGCGATACCCGATGACAGCTCAAGGGAGGGATAGAAAATAGCTCCCGTTTGGGCCGGATCTCTTA
TTCGTTATGCAAATATTGATGCTTTAGATAATGCAAATTGCCTTTACTCAAGAACGAGAAATAGA
ATCAATCCTAGTTTAAGGAATGAAATCGAAACAGTAGAAGCGAATGTATGCTCACGAGCGTATAA
TTAGGGTTTTTGCTTTCGTAACGGGTTAAGTAGGGAGCGAGCCAACTACAACTCTAAAGCGCTTT
CTTAAAGCCTGGGTTTAGATGCTTTTATTGAAGAGATACCTTTCCGAAGCTTATAGCGGAAGGGG
AATGAATAAGGCTGGTCTTTGTGTTTTCACTTGATGCCTTGCTAGTTTTATAGACAGATGGAATA
AACATCATTTAATTATGAGCTAGGCCTTTACTGATTGGCTTTGAT
Right flanking sequence: Indices 41207 -- 41706
ATTGCTTGTGACTGACTGCAACTTCCTCCTCCGCCGCCTCCAATGGGGCGAATCTGGACCCTCCT
TTAGCTTGCTCCGATCTGACTGATGTATCCACTTTTTTCCCCTGCTTTCTTCTTCCTTTCCGATA
TGAGTTGATCGCCTCGACCCATCTCTCAAGACGAGCGAACCAGTCTTTGGAGATATCACGAGAGG
AGACAGCCTAGAAAAAAAGGCATCTTTCGGACTTTCGGGGAATGCTTTAGTAAAGCTGTATCCAC
TCTAGTAGAATCTAAAAAAAAGCGCTAACTTCTTGAATGTGCTTCGCTTTGAGTTCAGAGATTGA
CTGACCAGACTGCGCTACACCTCGTCAGGTACCTTTGAGCGCTACGTGTTGAGAATAAATATCAT
ACCGGGTCGGGGGCATCCCGTACTACTAATAAGGTTGGTTGGGCTTTCCCCATTCCATGAACGTA
ACGAAGCGCAGAAACTCTATCGCCCGAGGGAGTTAGTTTGAACAT
Found at i:62891 original size:71 final size:71
Alignment explanation
Indices: 62798--62944 Score: 181
Period size: 71 Copynumber: 2.1 Consensus size: 71
62788 ACAAAATCGA
* * ** * *
62798 ATTTTCAATTATCTCATAGAGTGAAATT-GCCTTGTTAAGGTTT-TGCCCCTAGGTGAGATAGAA
1 ATTTTCAATGATCTCATAGAGTGAAATTCGCATAATGAA-CTTTCT-CCCCTAGGTGAGATAGAA
62861 AGTTTAAG
64 AGTTTAAG
* * *
62869 ATTTTGAATGATCTCGTAGAGTGAAATTCGCATAATGAACTTTCTCCGCTAGGTGAGATAGAAAG
1 ATTTTCAATGATCTCATAGAGTGAAATTCGCATAATGAACTTTCTCCCCTAGGTGAGATAGAAAG
62934 TTTAAG
66 TTTAAG
62940 ATTTT
1 ATTTT
62945 ACATGCCCCG
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
71 58 0.89
72 7 0.11
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (71 bp):
ATTTTCAATGATCTCATAGAGTGAAATTCGCATAATGAACTTTCTCCCCTAGGTGAGATAGAAAG
TTTAAG
Left flanking sequence: Indices 62298 -- 62797
CTAACCTTCCTGTGGAATACTACAATCAGATTGCATTGGAAAAATTGGGTGCAAAGGTTGGTAGG
GTGATTAGAATCGATAAGCACACTGTTGATGGAGGTAGAGGGAAATTCGCTCGGCTTTGTGTCGA
GATTGACCTGTCAAAGCCATTGAAGGCTAAGGTTCTTCGGGAGAATCACAGGCAGGTTGTCGAGT
ATGAAGGCCTACATATGATATGTTTTCATTGTAGACGTTCGGGTCACAAGGATTGTCCTTTTGTT
GGAAAGGACGTTGTTTAAGGAGGAGATAATGGAGCTGCCATTGTGAAAGACAAAGGAGAGAGGGA
GAGGGCATTTATGGATGAGCCGTAAGGCGAATTGTCTTTAGAGGTGAGCCGATAGGAATCGTTCA
CTTTTTAAAAACCCCGTATTTTTCGATTAAAAGTAAATTCCGCTAATAAAAAGAATTCCAAATCG
TTAAAAATGAAGACTTTTGCCGCTATATGAGTTACACAAAATCGA
Right flanking sequence: Indices 62945 -- 63444
ACATGCCCCGTTATAGTGGAATTGACTCTTAGACGGGTTTTCTTCTTTTTTGGCAACTGAGAATT
CGATTTTCTAGCTACAATTGACTCGCGTTCTAAACCCCAGTTTGTCCAAGAAACAACTGATGAGA
TTAAACAACTACAGTCGAGTTGAACAAGAGAAAAAGGAATGAATCTCAACCATCCGCATCAACCT
GCTCGGGATTTCCTATTGAGAAAAGCCATAGGTATCAATTTAACAAGCAATTGACTTTGAACGCC
TCTGAGCCTTTCGATAAGTCTCAAAAAAGAAAGAATGAAAGCGGTTCAGAACTCCATACTTCCCC
TAAACCCGCTTAAGACCCGGAAGAGAAGCCTTTCTCAACAACCGAGTAGTTTAACTGACTTCCAG
CAGTTTATTCTGGGCATGCTAAGATCAGGAGGGACACATCTAACAGCTACTCACGAGTTGTCAGA
CGGTAATAGGCTTGTGTACGAGCTAGTGTCAAAGGTTGAGACTAA
Found at i:63619 original size:30 final size:30
Alignment explanation
Indices: 63585--63714 Score: 260
Period size: 30 Copynumber: 4.3 Consensus size: 30
63575 GCTCTCCTTT
63585 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
1 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
63615 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
1 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
63645 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
1 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
63675 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
1 GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
63705 GGCGAAGGGG
1 GGCGAAGGGG
63715 TTGTTGGTAC
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 100 1.00
ACGTcount: A:0.32, C:0.13, G:0.52, T:0.03
Consensus pattern (30 bp):
GGCGAAGGGGGCGAAGAAGGTGAGCCGAAA
Left flanking sequence: Indices 63085 -- 63584
ACAGTCGAGTTGAACAAGAGAAAAAGGAATGAATCTCAACCATCCGCATCAACCTGCTCGGGATT
TCCTATTGAGAAAAGCCATAGGTATCAATTTAACAAGCAATTGACTTTGAACGCCTCTGAGCCTT
TCGATAAGTCTCAAAAAAGAAAGAATGAAAGCGGTTCAGAACTCCATACTTCCCCTAAACCCGCT
TAAGACCCGGAAGAGAAGCCTTTCTCAACAACCGAGTAGTTTAACTGACTTCCAGCAGTTTATTC
TGGGCATGCTAAGATCAGGAGGGACACATCTAACAGCTACTCACGAGTTGTCAGACGGTAATAGG
CTTGTGTACGAGCTAGTGTCAAAGGTTGAGACTAATCGATTCATTTCAAAGCAAGAGAAGGGGAA
TTCTTATGAGGGATTTTTGTATCTATCTGTTGTCATTGATTACGGATTTGGGATGAGCTACAGTT
ACTGCTCCCCTGTCCTCCACGCAACAAGCATTTGAGCTCTCCTTT
Right flanking sequence: Indices 63715 -- 64214
TTGTTGGTACTATCCCCTAGGGTGAAGCAACCAACCGTAAGAGAAAGATGAATCAGAATAGGGTA
TGTTGCCCGATCGATTAACTAAGTAGTGGAGGAGTTGGCTTTCCCCATCAAACTCGGGCTCGGGA
TTTGATGATAGGACTGTCATGGCAGCCTCAAAACCAATTCCTTGTAAGTTGTTTGCTTCTGGTGA
ATACCCGAACTTTTCATCGGCTATCAATAGTGCTTTAATTGATTGAACAGCACTTGACTTTCTTG
TTTCGGTTGGGGTTACCGTAGGTGCTAAAGCCCTTGCTAGCCTGTTTAACGATCTCTCGTACCCT
TCATGTTATAGGTATCGGTCGGTTAATGGCAAGAGGGGCATTCCTTTACCTCTGGCTTGATCCAG
CTCGTGAAAAGAGGCGGTAATGCTAATTCAATAAAGTCCTTAAACGAAAGGACTAGAAATCGAGT
TAATGGATTGAGTCTATCTCCTGAAACAGAAGAAAACCGTATTCC
Found at i:68568 original size:15 final size:15
Alignment explanation
Indices: 68548--68578 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68538 AAGAAACCGT
68548 AACCTTTGGTTTCAC
1 AACCTTTGGTTTCAC
68563 AACCTTTGGTTTCAC
1 AACCTTTGGTTTCAC
68578 A
1 A
68579 GGTCTTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.39
Consensus pattern (15 bp):
AACCTTTGGTTTCAC
Left flanking sequence: Indices 68048 -- 68547
AGGGCCAAGTTCCTGAAATTGAATTGAATAATCAAATCTTTGGTCAATGAAACTCTGGCACGTAT
ACGTAGGCTTTTCCTTTTCCTTACACAATTAATAGAACTCAGTTAATAGAACTAAGGCAGGCTAA
TCAAGATCATAGATTCTTACCACCCGTTCCAGGAAATAGACACTTCGGTATGGGATCAAACTGAT
GTGGCTTAATCAGGTGCTGTTGCTCAACCACCTGCAGTATCAGAGACCATTTCCATCACTGAGTC
AGAGGATGATGTGGCAAGATGTTTTGAAAAAGTTTTCTTCTCTTAGTACAGACTAAGTTCTGAAA
CCTTAGCACAAGTATGTACTAAGATCTTCAAACCTTTCTTTCATAGATAGATATCTCAGCTTTTG
GTCTTCGTAGATAGCACGGAGTGATTGACCGCAGAGAAGGGCGCAACTAGAAAAGGCCTGGAAGG
AGAAGCATAGAACTATCAATTAGAAGAGTAAACATAAGAAACCGT
Right flanking sequence: Indices 68579 -- 69078
GGTCTTTCATTTACATTTAGATCTTGACTTTCTAAGTAAGACTGCGCTCCTGCCGCAAAAGAAAG
AAAAGGCGGACCCCTTCTAAAAAGCTCTTGGCCTACCCTTCACTCTATTCACGGTTAGCCGGGAA
TGAGACTGGGAGTTCTATTTCTTTTATGACTTTCGCCTTGGACCTTACACTAAACAGAATCTCTT
GCACGCGCGTATAATAGAATAAGGAAGAATACCTAGCTGGTCATTGACCAAGGCCTTTTTCTTAT
CTTAATGTGGAATGCCTTCTTTTTCTTTTGATCGATGAAAAAGAAGGGAAAAGGATCCGTAAGAT
TGAGTTTAGGCTGCTACGTGTCGATCGGAAGACGCCATGCCGAGGCTCCGACCACTCCCTCAAAG
AGCCCAAAATTACGTAGAATAAAAGACTGATGCAGGCGGAGTTGAAAGTCCTTTGACCGGCTCTG
CCTTTAGCCCCAACGGGCGCTAGCTTCTGGTTCGAGAATTGATAG
Found at i:107647 original size:15 final size:15
Alignment explanation
Indices: 107627--107656 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
107617 GGAATACCTA
107627 AATAGGTATAGAAAG
1 AATAGGTATAGAAAG
*
107642 AATAGGTATTGAAAG
1 AATAGGTATAGAAAG
107657 CCATAACAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (15 bp):
AATAGGTATAGAAAG
Left flanking sequence: Indices 107127 -- 107626
TTATCGGCTCAGCGCTACTCCGTCTCCTTCGATGAAATATCAGTTCTAAGCGCCAAAGTGTGATG
TACATGCACTCATTTCAAGGGGGTGCTAGACTTCTCCGTTTGGGGAGCTACTTCCTTTGTAGAGA
GCGGAGTTGCTCAGAAAGAATGTTGTTTGATTGATATGGGAATACACCAATACTTTTTGACGTGC
GTGACGGATCAATCCCTATTTGTCAACAAGGGAATAGGGCGAGGGAATTGACGAGGGCCTGCACA
AGAGAAATGGGAGGTGCTCTTGCTCTTCCCACGGTAGGACCTGGAGTGCCAACAATGGCACGATT
GACGAGAGACTTTTTTACGGGGGTCGCCTGTGTCGCCGGGAATTCTTGCAGATGAAGAGATGTCA
AAGGGGCTTCATCCCGCTACGGGGAAGATCCATAAGTAAGCAAAGCGACGAAGTAGATGTATTGT
AGTAGTTATGCGACTCAGAGGACGTTGTTTGGAGCGGAATACCTA
Right flanking sequence: Indices 107657 -- 108156
CCATAACAAGCAAGGCTGAAAGGCGAGGTATGGAAACCATATTCAGGCGATCAATAGGAAGAAAG
ATAGCACAGCTACGAGTAGGACTTCGAATAGTTCACCTATTTGTGAAAACCTGCGCTGATGATAT
CCAGGAAGCAACATTCTGGCTGTTTGTCGCAACGCGTATAAAGTAGTCACCTACTATGCCCTCTT
CGCCTCCAGAGAGAGAAAGTAAGCAGATGGATGCATGCAAATGATGAGTATCTGAACGAGTAAGA
AGCATGTGCAATCAAGTTCACGGAATCAGCTTTTACCCTTCCAAAGAAGCAATTCATTGCCAGCA
GCAATGGACTTTGCAAGAGTCTCCCATGATCTAAGAGATCGACTGGCACTACCGAAGCCACCCAA
CTACCTAAACTCTGGTTCGCCAAGATAGATTGATCCGAAATCTGACGAGAATGTTCTGACAATGT
GACGTAGAGTGAGTGCGAAAAAGAAACTTTCATTTTAAGTATCCT
Found at i:122677 original size:14 final size:14
Alignment explanation
Indices: 122658--122685 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
122648 GTGTGCACAC
122658 CCAGTGCTATGAAA
1 CCAGTGCTATGAAA
122672 CCAGTGCTATGAAA
1 CCAGTGCTATGAAA
122686 GCTGTTCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (14 bp):
CCAGTGCTATGAAA
Left flanking sequence: Indices 122158 -- 122657
GCCCCTTTACTGTAGCTAGCTACTGCAGAGGATGAAAGTAGTTCTCCCCGTTAGTAGTATCGCTT
TCAGTGGGTCAAGAAGAGAATCGAGTTAATTATGTTGAGAGACACCGTCATCGCGACTTAGAGAA
TTGAATCCGCTATCGATAGGTAATTGGTACTTCAGCTATGCCCGCAGATGATCCACAGGTACATG
CTCGAAAGCCTTCTTACTCTGAGCTCTTCCCATTCATGAAGTGAAGTTGAAGATGAATTCTCGGA
TATGAAAGAAATGGGGTTCTGCAAAAACTAGAAAACTCATTCTAGTTTTTGCTGTCTTATTACTT
ATGGATTCTGGTTAAGAACCTAACCCTATCATAAATCTATAATCGATTCTTGAAACTCGATAGCT
AGTGACTCTGTCTGCAGCTAACTCATCATCTGCTATCTATTCTTATCTAAGATATTTTGCAGATA
ATATCAGAAATTGTTGAAGAAAGAACAAGTCTTTGGTGTGCACAC
Right flanking sequence: Indices 122686 -- 123185
GCTGTTCTGTAGAAATTCTCATTCGTTGCAGATCTTTGATCAGACGTTTTAATAATTGTTCTTCC
TTATTCAATCTTTCTTTTCATGGTATTTTCTCAGAATAGCATTCTTTATTGATCCTCAGACCAAC
AAGATTCAATTGATCTGATGCCTTTCTTTAGGCCGAATCCCGCTCATCTTTGTCTTTGATTGAGA
CTTTTAACAGGTCTAAGTTCTGATTTGAATCACATGTCAATGTTGTATAATTCTCACTGCATCAC
TGAACTTATCAAGCTCCTTCTCAACGGAGGACTTCCTCAAAGGCTTCATTCGTCCTAGTTCGCAG
CTTCGGTGCCCGGCTAGCCACCCTGACACCCTGGCGGGTCCCTATCCAAAACAAGATAAAGAGGC
AGAGGAGCATGGGTCACGCGCACCCTAAAAGTAAGAACGTAAGGGATTGACTAAGAGGACGTGTT
GGGAATCAAGGGTCGTGAGGAGTGTATCGGTCTTAAGAGTTATTT
Found at i:129915 original size:15 final size:15
Alignment explanation
Indices: 129891--129920 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
129881 AGAGTCAGAC
*
129891 TTAGCTGCAGTACCA
1 TTAGCAGCAGTACCA
129906 TTAGCAGCAGTACCA
1 TTAGCAGCAGTACCA
129921 ATCCCTATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (15 bp):
TTAGCAGCAGTACCA
Left flanking sequence: Indices 129391 -- 129890
CCTTTCAACCCCTTCTAAATCGGTATATTCCGGGTATTGCCCCGAGTCAGACAACAAAACTGCAA
ATGCAGATGGTCAGATGACGAAAGAAGAAGCAGTGAAATCATAAACAAGAAAGTCAAATCCTTTT
ATCGCTCTGGTTTCTTGGTTAGAGAATGATCAAAGTCATCAAATGATACACCAAGACTAGTTGAC
ATTGGGAAATACAATAGGAAAGAAAACTACCCCTTAACCGATAGGAGAAGTAGGAGGACGAATCA
AGCTTCACCTCTAAACAAGAGGGTTGCCTTTGACTTTGATTCAATTACGCAATTAGGATCAGAAC
CACCGGTCTTTTCAATAAAGGCTTCGGATTAGCTTTTACGAAGATTCCACCGCGCTCTACTATGA
TGGGTATGTACTTTTAGTTTGACCCGAGGGAAAGCTCTTCATTCATCTCAGAATCTTCTAAGTTG
GTGAGTTAACCATCTGCATTACCTTTCCGAGCTCGAGAGTCAGAC
Right flanking sequence: Indices 129921 -- 130420
ATCCCTATCTACCAATCATCTCTATCTAATTAATTATGATAAGGGGTTGTTGATGTATAACCCAG
ATCGTCACATACCCTCAGTTGAGTTGCCGATCCCGAGCCTGGCCATTTTTCTGGCAGCTGAAGAA
GCAGAAAGGGGAGCAAATAGAATTGCCTCCATTCCCGGGAACTAACAATCCCTAGCCCCGATCTC
GAACTCGAAGCAAGAAAAGCTAGTCCATCTAGTTGTCTCATTTAGTTCGTTGTTTTGTTCGTGGA
ACATACCCTAGCCTTTATAGCTAGAGGTACAGACAGATAATGTGCTTCTAGTCTTATAGGCTCTG
CAAGACCTAAACGATATGCCGTAGATAAAGCAATCTCCTCCATTGACTTGGCTGAATCACTCACT
CGCCTCTGGTTAATGCTGAGGTTGCAAAAGCACGAGATGCAAGGGATTTTACTGGATGTTAAACC
CTGAGGGATGTAGCTAACTAAGGCAGTCTGGATGCTAGCCAAGAG
Found at i:133170 original size:30 final size:30
Alignment explanation
Indices: 133108--133170 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
133098 CCCTGCCCCG
* * *
133108 AAAGCGAACATATGCTTTTTCTTCATTTTC
1 AAAGCGAACATATGCTATTTCTGCATTCTC
*
133138 AAAGCGAACATATGCTATTTCTGGATTCTC
1 AAAGCGAACATATGCTATTTCTGCATTCTC
133168 AAA
1 AAA
133171 TAGATTGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (30 bp):
AAAGCGAACATATGCTATTTCTGCATTCTC
Left flanking sequence: Indices 132608 -- 133107
TTCTGTTAAGGCAAAGCCTAAAATTGCATATCCGAATAATTGTTTTGCTAGGGATGGATTTCTTG
CCACGGAATGTATTAATGAACTGAAGACATTTCCGATTCCTACTGCTGCGCCCGCCAAAGCAATT
GTAGCTGCTCCTGCGCCAATTGATTTAGCTCCTTTTTCCCCATTCATTGTAAAAAGAAGGGAAAT
TTTCTTTTCTCTTCCTGTTGAAAAAAGCCTTTCCATAGGAGTTGAGTATCTTGTATTGTGTTGGA
ACTTTTTCCAACTTTCACAAAAAACTCTGTCCTATGTTCGAATATCTCGAAATGCTCTTCCAGTT
CAGGAGATAAGTCGGAAAACTCTTTTTCTATAGAGTATTGAGATGAGTTATTCCGTATGTCGAAC
GTAGAATCTAATAGAGACATTATAAGTGACCGAATTTTTAATATTCTAAGCAAACATCCATTTCC
TTTGAGCGCGGTTTGTTGGGATAGATAATTCACCCCCCTGCCCCG
Right flanking sequence: Indices 133171 -- 133670
TAGATTGGATGTACATGCATTTTGTGTCTCTATTAGATTCTGTACGAACGAAATTTGCATAGCCA
ATTGCCCATTATAGATTATAAAATCATGGGGTGTTCTTCTTAAAATGCAAATTTTTATTTCTTTA
TCCAGCATTTATAAAATTTTTTATAATTGAATTTCTCACGCTTTAAGATTTTCTTTTTTAATTTT
ATTTTCTTTTCTCTAAAAAAAACCAACCTCACAGATCCCACTCAATCTTTTACACCGATGTATCG
TACTCTCTCGACCAGGTCATCATAAGAAAATACTGCAAAATCCTTCCATTCCAAAGTGAGAGAAG
GAGGAAAGGCGTGCTACAACTAATATAAAATCCAGCTGAAAAACGCTAGCTAGCTAGGCTAGCGC
GCAATGGCTTTCTCTGATAGGGGCTCGCTTCTTCAAGCTCCGCCCAAACCTATACAAGCAAGGTG
CTGCTCGCTTTCTCTCAGCCACTAGTGGCTTATGTAGTGGTCGGC
Found at i:134506 original size:19 final size:19
Alignment explanation
Indices: 134482--134519 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
134472 GCAAGAAAAG
134482 CCCTAACTATTCTATTAGT
1 CCCTAACTATTCTATTAGT
134501 CCCTAACTATTCTATTAGT
1 CCCTAACTATTCTATTAGT
134520 AAAGCCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (19 bp):
CCCTAACTATTCTATTAGT
Left flanking sequence: Indices 133982 -- 134481
TTGGTTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCCTCTTCTAGGCTCCG
CTGGACGACACGGCATTCTCGTTCAAATATAGGCCGGTCGTACTTGTGATGGTTCCCAAGGATCC
AATATGACTACTTAGGTCTACGTTGCCGCGATATTGTTCTATGGAAGCGGGCGGGCTTGTTAGAG
GTTCGGCCCGGTTTTTTTTGGTGTCGTAGGGGAGGGATTGATCTTTCTAACGCATATTCAGTCGT
ACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCCAGCAGCGCAACCCGGTTCTACTTG
ACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTCTCTTTTTGATAACAAGGC
AGAAACCCCCGACATTCATTAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCGGCAAGCACCT
ACTCCTATCAAAATGAGATTGACTTTACTAAACAAGCAAGAAAAG
Right flanking sequence: Indices 134520 -- 135019
AAAGCCTAAACGCCCTTGTTGCTAAAGGTAAGGCCGGCTTTCGAGCTGTAGTTTTACCAACGATA
GGGGCCTTTATTATTATTAGTAAGATAGGTTGTTTGAGCGCATTTTTCCCCTTTCTATTAGTAAG
GTTGTCAAAAGGCTTTCCGATTGTTTGATTGCGGGGGCATCCATAGTATAGTAAGGGGCCTTTTC
AATAAGGCTCGCGCTAGGCCTTTTTTGGCTTTTCTAAAATCGAATATTTTTCAGTTGGTAAAGAC
CCACCCCTTGTTTCAGTCAGAATGAGTCCCCGGGAACCCCGGGACATTGGCTTCCGCCAACAGTG
GACTATTAGGATCACATCCCGCGCATATTCTACATTATAGCCTGCAACTAATTCAGCTTCCGCTT
CTGGGAGATCAAACGGAGCTCGATTAGTTTCTGCTAGACAAGAAATGAGGAACATAACCAATACA
GGAAACAAGGGAATACCAGACCATATTTGCTTTTGCGCCATGACA
Found at i:137408 original size:33 final size:33
Alignment explanation
Indices: 137371--137439 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
137361 TCGAACCCAC
137371 ATTTTGAAAGGTTCTGTTAGGTTCTTAGTAGCA
1 ATTTTGAAAGGTTCTGTTAGGTTCTTAGTAGCA
137404 ATTTTGAAAGGTTCTGTTAGGTTCTTAGTAGCA
1 ATTTTGAAAGGTTCTGTTAGGTTCTTAGTAGCA
137437 ATT
1 ATT
137440 AGCGGCCTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.43
Consensus pattern (33 bp):
ATTTTGAAAGGTTCTGTTAGGTTCTTAGTAGCA
Left flanking sequence: Indices 136871 -- 137370
TTCATTTCCGAATTCTCTTGCGACAAGTCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGC
AATCCAGCTTGATGACGAATTCCACGATAACAAGAAATAGAAATTAATCGTTCGATGTCTGCTCG
TTCTCCCCTCTTCAATTCCCAATGAACAACATGATCTTGACCTATTATTTGTTCAATTTGGTTGA
TCTGATACTTAGTTAACTCTTTTATCTTTATGTTTCCACTGATACCTAATCGATAACGAACCTGA
ATGGCTTTTTTAGGTCCAATTCCATAAATTTTTGTTGAGGCAATTCTTACTTGTTTATCGTCAAC
TAATCTAGCTCCTGAAATATATGACATTCTTGATTCTTCCCTTTACTAGTCTTCTCGGCTGGAAT
CATAAATGGATTGTCTCCTCTCTGATGATCTTTTCTATAGGTAGAACTATTGTGAGCGATCTAAA
CTTCGACTTCCCCCGACCCGATCTACACAAGGTTTTCGAACCCAC
Right flanking sequence: Indices 137440 -- 137939
AGCGGCCTTTTCTTATTTTTATTTCACATTGCTTTTTGTCTCCTTGATAGCTGGAAGTTCTCCAA
AAGTATGAAAAGCTGGAGGACTTTGTACCATCCATTCCAGTGTGGTTGAATTCTGTTCAACAGCC
CAAGGACTTGGAGCACATCTTTTGTTATTTCCACTGCTTGAAGTGATTGTTACGACCACGAAGAA
ACGACAAATCCCAACTACGGATATATAAGAGCCAAAACTGCTAAGGGCATTCCATCCAGCGTAAG
CATCTGGATAATCTGGAATGCGACGTGGCATACCCGAAAGCCCTAAGAAATGCATGGGAAAGAAG
GTCAGATTAACCCCGAAAAAAGTGATCCAAAAATGGATTTGACCCAAAGTTTCAGGGTATGTCCG
ACCAAAGATTTTACCTACCCAATAGTGAAATCCTGCAAATAAAGCAAAAACGGCTCCCATAGAAA
GTACATAATGGAAATGTGCAACCACATAATAAGTATCATGTAGAG
Found at i:144183 original size:11 final size:11
Alignment explanation
Indices: 144167--144193 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
144157 GTATATCCTG
144167 TGAATCAGTTA
1 TGAATCAGTTA
144178 TGAATCAGTTA
1 TGAATCAGTTA
144189 TGAAT
1 TGAAT
144194 ATGATTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (11 bp):
TGAATCAGTTA
Left flanking sequence: Indices 143667 -- 144166
TAGTTGCGTAGGGACTGATGGTAGGTTCTCCGATTACGCCTTGGGATGGTCTATCTATGCTAGCC
AGTTTCTAGAAGATAATCGAGAATCAATGAATCGAATTCTCAAAGTATTAGCCAACAACTCTTCC
GCATAGAGAAGGCTGGCTGGACTAGGGGGATTAGACAGAAGGAGATTCAACCCCGACTGCACTGT
TAAGCTTTTTTTCCTTAGTTGATTGGGGCTACAAGTTCTTAGCTACGCGCATAGCTACTTTGATA
TTACAAGCTACTTCGCATCACCTCTTCCTACTCGGCTCAGCTATCGTTTAGGTCATCAAATAAAT
AGGTTTGATTAGCTTCTAAATTTTAACACGACTAAAAGCTGTTAGCCTATCATATAGTTGTAGCG
GAATTCTCTCATGTCCTACTTTTTTTTACTTCGCAGTGATTGGGCTGTGCCGCCGTAGATCGATC
CCGCCCATCGTCGGACCACTACCCAGTGGCTGTAGGTATATCCTG
Right flanking sequence: Indices 144194 -- 144693
ATGATTCATTTCACCTAGGATTCTCTATTTCGCTCCGAAGTTGGAACAAGTCTTCCTTTCCAGTT
TCCGCATCCATTTCTTTTTATCGCGAGACAGCATGGTCGGGCACGAGCGGTCTGGTGTCCGAGCC
AATTGATCAGACGACGACTGCCAACAATTGGTTCTTTTACTGACACTTGACTCGAACCGCTTTCC
ATATCTAAACTAGCTACTGGCAAAGAGGGAATTGATTCAAGTACTTCACTTATTAGATTAGTCTG
AGCCGCCTATCCCGGAATGGAATGTAAATCAAACGTAGAGCAAGTTCCCTTAGGGATCTTTCCCC
AAGCGCTCCCCGACCCAGCCAAAACCCCCTGCTAATCCGGTTGCTTTCCCAAGGGCGGCTGGACG
AGGCGCTGCCGCAGGCGCCAGCTGGACGTTCCCAACCCCTACCCGCGGGTCGAACCGGTGACAAC
CGCCGCGAAGCCCCGAGCCACCCTTCCTTTCGGCTAGAAGAGCGA
Found at i:153776 original size:13 final size:13
Alignment explanation
Indices: 153758--153784 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
153748 ATACCCAATC
153758 AAATAAATAGCTT
1 AAATAAATAGCTT
153771 AAATAAATAGCTT
1 AAATAAATAGCTT
153784 A
1 A
153785 TGGATGAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
AAATAAATAGCTT
Left flanking sequence: Indices 153258 -- 153757
TCTCTCCCCTTCCGCTCAGCTCTTTGTTTGAAATGATAAACTAATACTATCAGGCCAGAGCCGCA
GCAATAGATGACTGAGAACTTCTGTGTTCGTTGGTCTTGCAGAGCCTCTTTATTGACGAAAGAAG
GCTAGGCTTCTTGAACGAGAGCTAATCCGATCAGGGAAGTTGGACTCACCGGGCCTATCAGACTA
GAGCTTTTCCTTGCTTAAGAAAGAAAGAACGAATGGAACTCTTCAAGTCCCAGATAAAAGAAAAA
AGCATATCCCTCTCTTTCTCCAGGTCCTATCGAACCAGTCACCGCTTGCAGCCCCTGGCAAAGAC
CCGAAAGAAAGAACAAAGGTTGAGCATTCCCTAGTGAGAGGACCTAACTACACAAAAATCCATTA
TCCTTTCTCGAAGCCTAAGTTGAAGCGAGAAAGGTGTAGAGGAATCTAAGCCCATTAAGAGAGGC
TTTCTGAGATCGAGATTAGGTAAGAGTGAAATCAAATACCCAATC
Right flanking sequence: Indices 153785 -- 154284
TGGATGAGGATAATTCTGAAAACTATAATCGCTTTCACTCCAACGCAACGAGCTAACTCTGGTAA
TTTAACCCTATCAAAACCGATAAACGATGGATTCCACTTTTGTCTTTCCTTTTCTGTCTCTTCTT
TCTAGTCTGGTAATAGAATAGGCGCACTTCTTTCTGGTCCAGTTGCCAGATAAGTGATCAACTTG
GAATGAGATTCTATTTTAGTGAAATCTCGCCTGCTACCTAAAATACAGGGTTTCCCCAACCTATA
AAATAGGAATGAGGAAAAGGAGAGCTCTTCTTCGCACTAGCCTAGGATTATCTTTCGTCTTTCTT
TCAAGGAGTTAGTTGTTAGAGCGCTCTTAGTTCAGTTCGGTAGAACGTGGGTCTCCAAAACCTGA
TGTCGTAGGTTCAAATCCTACAGAGCGTGATGTAGAATCAACAGACCTTCTTGCATTTCCTTTCT
CACTATTTCGAATTCGGATCAATTCATTAAAAAGATTTGGATCTT
Found at i:175001 original size:17 final size:17
Alignment explanation
Indices: 174979--175012 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
174969 TATCTATCCT
174979 AATAGGGTCACTTCTAA
1 AATAGGGTCACTTCTAA
174996 AATAGGGTCACTTCTAA
1 AATAGGGTCACTTCTAA
175013 GGAACCTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (17 bp):
AATAGGGTCACTTCTAA
Left flanking sequence: Indices 174479 -- 174978
GTGCTCTTTACAGGAAGGAATCCTTTCTTTCTTCTTTCCTTAATGGCATCTGATGAATTACCGGA
GCTAAACCCAAATTTCTAAACCTATTCTATCGCTAAGGTCTTTTCTATTGTCTCTTTCCCTTTAA
CCAATTTCTCGTGTATAGACACCACTCCAGCTAACCTTCATCTTCAAGCTTTACTTTTACTCTTG
ATAGCACAGGCTCATCAAGAAGAAGCAGTTTAAGCAATATGAGTATGATGGCAGACGGATGCGCT
CAATCGGGGATTGCTTGCGGTTAGGCCCCCTCCTTTTGACCCTTCCTTTTTCTTTGTCTCTCTAT
CCCGCTATCTATTTAGGGCTAGTTTTTGTTTAGCCAGAAGAATCTCCAGATATCACCAGCTCTTA
AGGCTAAGTAGTTCTTTCCCCATTCCCCCCTTGGGATTGTATTGCGTAAGGTTCTTCCTGTCCAA
AAAGTGAAGTCTTTCCGTTCTATTCCTTCTTTTTTTATCTATCCT
Right flanking sequence: Indices 175013 -- 175512
GGAACCTATGTCTATGTCCGAGTGAATGTGGATTGCTGTCTTTTTTCTTTCTTGTTGTCTAGATT
ATCAGTTGTTCGCTCAAAAGAGGGCTTCGCTTAAGTGAGTTTTTCCTATTAAAGGTTTTCTTTTA
GTATGCGTATATGTCAGAGGGGCTTTTAAGAAGAGAGGTCTTACAGAGCCTACTCTTGAATGAGT
TTCCAGGGGCAGGGCATTAGCGTCTGTAAGTCGCGATGAAGGTGTCCCTGTAGTGGATGATTCGA
AGTCAGAAGACAAGCATTATCAACATTCAGCCAGTAAGTAAGTGTTAGGTCAAGGCTTATTTGTT
TTATAAGTCCCTTAATATCATTCCTCTCTTGGATACGACAGTTGTCCATTCCGTCTGGTGTGAGT
TGTCCCCCCGTTAATAGGATTTCTTCTTCTTTGAAAAAGGTTCCCGCCTTCTCTACTCTAGAATT
AGCTCGTAGCTTTGCTATTGAATTCCGAAGAATAGAATTCTCTGA
Found at i:188672 original size:14 final size:14
Alignment explanation
Indices: 188653--188682 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
188643 TTCCATTAAA
*
188653 TTCGGCGTTTAAGC
1 TTCGGCGGTTAAGC
188667 TTCGGCGGTTAAGC
1 TTCGGCGGTTAAGC
188681 TT
1 TT
188683 TCGAGATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.30, T:0.37
Consensus pattern (14 bp):
TTCGGCGGTTAAGC
Left flanking sequence: Indices 188153 -- 188652
TCTAGTTTGATCGTGTTTTTAGCTTACTTCTCAATTGTAGTATAGAAAGGTAATTCTAAATCGTT
AAAAAAGAAAGCAAAAAGACGGTCTTTCTTCAATTGAGTAGATTGGGGTTTCCTTTCTTTCATTC
CCGGGATTTCAAATTTCGTATTATGATCGCATTCCCTAACAGAAAAACTAAATGTTCACCGCTAA
TGTCGAAGTCGCTTTCCTTTAGGGAAGCAACCAATCCACCAGCTGCCCTTGCCTTAGCTGCAGGA
ACTCTAGCTGCAACCTCGCTCGCTATTGATTTAGCTGCAGAGACAGAAGAGAAGGCAGGTAGCGC
ATTAGACAAAAAGGCTTTTCTTCCCTATTCCACTGCAAGGGTACGAAACTACGTAGAAGCAATGT
CCGTTAAAATCAGTCTTTCTCCTTCTCCTATATAGGGAGGGGATTGCCTTACAAAACTCAACCTC
AACCTACCATTAATTAAGGGAGAGACAATAAAGCATTCCATTAAA
Right flanking sequence: Indices 188683 -- 189182
TCGAGATCAACCTTAGAAGTAGAATTCTACCGGAGAATCACATCGATCGTTGTAGGTTGGCCTTT
CTTTAGAGTATGAGTCTCGATGGGTGGATCTTATCTTCTTCTGAGATTTGGAGTACAATAAAGTA
CCCATCAAGAGCCCTTTTCACAGGCTATGACCTTTTCCCTCACGCGTACGATTGGGGAGGACCAC
AAGTAGCCCAGGACAGGAACTAGCTGATTTAGCTTCCTTTCCACCCGCGCTAAGGTTCTTGCAGC
TAAGGCCTTTTAGCTACTCAACCTATTCGATAGCATCAATCCGGTTCCGGCTCAGTGTACGCCAT
TGGCTCTACTTTTTTGTATTAGTTTGCTAATGCAATCGATACTTTTCCATCCTTGGTAAGATGTT
AATCGGTGTATTCGGCTCTGCTCTTTCAGCTGCTTGGGTGGGCTCTTGGCTTGTAGCCAATATGT
TCCCATCGTCGAGAAGGTTACTCTTTGTTGGTTGGCACGGGACAA
Found at i:189521 original size:7 final size:7
Alignment explanation
Indices: 189506--189542 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
189496 TTCTGATTGA
189506 AGAGTGC
1 AGAGTGC
*
189513 AGAGAGC
1 AGAGTGC
189520 AGAGTGC
1 AGAGTGC
189527 AGAGTGC
1 AGAGTGC
189534 AGAGTGC
1 AGAGTGC
189541 AG
1 AG
189543 TGACTATGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.32, C:0.14, G:0.43, T:0.11
Consensus pattern (7 bp):
AGAGTGC
Left flanking sequence: Indices 189006 -- 189505
ATTGGCTCTACTTTTTTGTATTAGTTTGCTAATGCAATCGATACTTTTCCATCCTTGGTAAGATG
TTAATCGGTGTATTCGGCTCTGCTCTTTCAGCTGCTTGGGTGGGCTCTTGGCTTGTAGCCAATAT
GTTCCCATCGTCGAGAAGGTTACTCTTTGTTGGTTGGCACGGGACAAGCACTTGCTTTCTATAGT
TCCTGGACATTATTCATTCTAGCACACCACAAGACCGTGTGGTTGAGTAGGGAGTTAGTGGATCC
GGGTTTCCTGCTTATGCTATCTTGGGTTACGATCTTGTTATCGTAGATGCGTAGGTGGGAGCTAT
CAGAAGGTGGTGGGGATTTCCGACGATTCTTCTTTCAAAAGTTCGGACTTAAGTAAAGAAAGAGC
AACGATCTGCGCTTTCGAATGAAGGCTGGTCGTAGATCTCACCTCACTATCTGATCTTCTCTTCT
ATGGTGGGTACGCCGATTGGGGCAAGCATAGTTTCTTCTGATTGA
Right flanking sequence: Indices 189543 -- 190042
TGACTATGCAAAGGGTTCGATTACCTTTTTAACCATGAGATAGGTACATTTTTAACTGACATACA
TCTCGTGTTAGACTTCACGGCTATTTAAAACTAGCAGCTTTGCCACCGTTTAAATCCAACTGCCA
GCTCTCTCATGATGCTAAAAGAGAACCACCTAGCAAACTTGGAATCCAATTGGCAGTGGGCAAAG
GCGTAGCAGACGCGCTCATAAGCTCAGAGAGACAGGATTGACTGACACGAGAAATGTCATCCTAT
AGGTCTGGCAAACGGGAAGCTTCGAGATGATATGGATGTGTGTACTATCTAAGTTGCCTAAACTC
CGATGGAGTTGTTTGTGCTTCTCCTTCTGTTTAGACTAAGGAAGTATTTGGGCACACCGTTAATA
CATGGTCGAGTTACAAAGGTTACTTTTCTTGAACTTATTGTGAGAAGGTTAAATCTAAGTTATCC
GGGTGGAAAGCGAAGACATTGTCTTTGGCTGGTCGGTCGACTTTG
Found at i:194387 original size:21 final size:21
Alignment explanation
Indices: 194361--194405 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
194351 AGAGCACAAA
*
194361 ATTCCTGGGAT-TTCCTCTCAG
1 ATTCCTGAGATGTT-CTCTCAG
*
194382 ATTCCTGATATGTTCTCTCAG
1 ATTCCTGAGATGTTCTCTCAG
194403 ATT
1 ATT
194406 GAACAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (21 bp):
ATTCCTGAGATGTTCTCTCAG
Left flanking sequence: Indices 193861 -- 194360
CTATTATTTTTTTCATCAGGAGTTAAATAAAGACAAAAGATATTTCAGTGACCTGGCACGACAAA
ACACTCTCCGAGGGCATGGAATATCTAATTGTTTGATCAGAAGCCCTATGGTAATGTCGATGAGA
CTTTTCCACAGCGAAACAAATTTCGGGTCATCAAGACTCGAAAAACGACGACATTTCCTTCTACT
AACGATGAAAAAACCATCTTGCCCCTATGACCCCCCAACAATTTCGGAACTTCTGAGAAAAAATT
TTATCATTTCATTCATTATAATGAATAATAAGGATAATATACTTTACATTTTCTTTCAATTACAA
ATAGAAAAAAATTGTCCATTAATCAAAGTGAAGAGGAAAGTGAAGAATTTGTTTATACCACCACC
ACTCGGAATTTTTGCTAAGAAAGGAGTAGGTGAAACCTTCATTTTTTTTTCAAAATGCTTGTATT
CTTTATATCCTTCACTCTACGTTTTCTTTTCTGATAGAGCACAAA
Right flanking sequence: Indices 194406 -- 194905
GAACAATTTTTAAGCTCCTTTTGGGAGTTGTTGGGGAATAAACCCCCCGAAGAAGCCCCAACCGA
TCCCCCCGTATCTCCTTTAGTTTTCCTATTTATTTCTGCTGCTTTTGTTCTTTATTTTTTTTGGG
GAAATGGGGGGGCTAAATTCTCGTCGAGCCGAGGCCCCTGGGGTAAGAGGGCTTCTTCCCCCTCC
GGATGTAGTCCTCGTTAATCTTGTTTTTGTGGAGGGCGAACCGGGTAACCAAGTCACGATCAGCG
GGAAGGCTTAAATCCGAATCATGCATTTTTTTCTGGATAATGACGCTGGTTCGAATCCGGCTCGT
GACGAAGGACTGCCTTTGAGCTTTAACCTATTTCATTTATTTATTCTCTTACGATAATTTTTTTC
CGATCCTTTTTTCCTAAATCCGCGGAAAAAATCTAATAATATATAGGTTTCGGAGTTTTGTTTCG
TAATCCATCACTTGGCCTGAACCCGTGTCTTCTATTCCCTCCTCC
Found at i:202723 original size:19 final size:19
Alignment explanation
Indices: 202699--202740 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
202689 ACATCTCAGA
202699 GTAGGAAGCTAATCATTCT
1 GTAGGAAGCTAATCATTCT
202718 GTAGGAAGCTAATCATTCT
1 GTAGGAAGCTAATCATTCT
202737 GTAG
1 GTAG
202741 CTGAGTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (19 bp):
GTAGGAAGCTAATCATTCT
Left flanking sequence: Indices 202199 -- 202698
GATAAAGTAAGAGAAGTCCATACTTTGTCCGTCAATCGTAACCCCAAACGTCTTGTTCACCTGTG
TCGGTTTGGTATTGTCAAAGGTCTTAGAACACAAAGATGAACCAGCATTGGATGTATTTTGGCGA
GCAAAGAGGTTTGCAAAGGAAGTGATGCTAGCTATAGGAGTTGACAAACCAAAGGCTAGTGTGCC
ACGATGGCGACACGGGAATATGAGGAATAATCCGCATGATGGGACGATGTAGACGGAACCACTTC
AGTCTCTGGTGCCTTGATCGAATTCTGGCTTTCCAACGCTATCCCCGCCAAGTACCAGTCTCGCA
ACAGTACTGGCAAAAAGGATTGGTCCTTCACTTGCTGATCGCTTTATACCTACTTCTTGAAGATA
CGATACATCTTCTAAGTCGAAGGCATTGGCGTTAACGTTAATAATGGTCTTTCAACGATATTTAG
GTTGGTGGCTTCCATGTCGGGTTCTACTCGACGCGACATCTCAGA
Right flanking sequence: Indices 202741 -- 203240
CTGAGTACTTCTTTTATTTAAGTCAACGAAGATGCTTTATTATATATGATATTTGCAGTTTCAGG
TTCATCCTAAGGCTTTAAGAAGGATCTGAAAGACCTTCCTAAAAAGAAGGGCTTTACATGGAAGG
TGCAGATGCTACATCCGCAGCTATTGAAGATGGTCTTCTTGGCTTCTGCTTTCCTTTTCGCGTCT
CCTTGGCAACATTTCTTTCCTGCTGCTACAGAAGGGCTGGTGCTCTAATACTAATTAGTAATAGT
CTTGGCTTAAGAGCTCTTGTCCGCCTTTTAGGTTGTTGGGCCTTATCCGCCTCTTAGAGGTAATT
ACTGGAGTAGTAATGTGATCTTTTCCTTATCTCGATCTATCTCCGCTGTCTAAGCTCGTGCAAAG
CGTTAACTATCTGAAGTAAGGGTATGGATTTGATCCTAGCACCGAACTCTAAGCGCTAGTTTCAC
CTTCTTCGGTCTCTTTCAGCTGCGGGCTTTCTTTTTATTAGTATT
Found at i:207835 original size:21 final size:21
Alignment explanation
Indices: 207809--207850 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
207799 AGGTGGCTAG
207809 ACTCTTAATACCTAGTAAAGC
1 ACTCTTAATACCTAGTAAAGC
*
207830 ACTCTTAATACCTATTAAAGC
1 ACTCTTAATACCTAGTAAAGC
207851 TCTTAGCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (21 bp):
ACTCTTAATACCTAGTAAAGC
Left flanking sequence: Indices 207309 -- 207808
CTCCTCTCTTCGAATTCACTGACGACCGCTATCGCATAGTTGAAGCAATATTGGTGTTCGGTAGT
CCCTTAAGCTTTTCTTCAAACTATCATCTCATCGTGGATCGGGAAAGGGGCAGCGCTTTAATCCA
TTAGGGGTTCGATCCGTCTTCGCGCCGTGATTACCTCCCCTCCGATAGGGTTTCCGTGTAGGCTT
CGTCCTACCTCGTAATTAGCTACCGGCTTGAAATAGCAATTTCTCCAGACAGAACTGCTTTCGTA
AGCCCTTTTTTCTTATATCTTCCATAATATAAATAGAATTCAGTAGGTCTCGTGGTTGGAACTCG
ACCTCAAGAAGTGGAAAGGTAGAGCTCAGAGAACCCGAAGCCAAAGAATCATCTTAGGAATCAAT
ACCTTCACGGCAGCAAAGGTTTCAAGATGCGAGACTGAAAGGAGAGGAAGAGGCTCCTAAGCCAA
GAAAGAGTCAAGAGTGAATCCTCAACCAGCAGCTCAGGTGGCTAG
Right flanking sequence: Indices 207851 -- 208350
TCTTAGCCAATCCTCCTTCTCGGTCTGAGTAGGTAGTTCAATCCGAGGATATTTGCTATTGCTAA
TTATATAAACCAGAGACTCTTACGTCCTGTTCATGAGTGGCTTGCGTCTGTCTTAAGGCCTATCC
CTATGGATGGTACATTCGATCAAAGAGCACCTTTAGATAGGTTGCGTGGTGGCTCGAGAGTCTCT
TTCTCAAAGGCTAGCTGACCTCTTTACTGACAGGAAAGACCAAAAGCTCGACAGAACCGAGAACA
CCGAACCTGGCCGAAGAGAGGATGAGAGAAGTTGGCGATAAGCAGCGATCGAATCGACCATCGAA
GAGTGATGCTACCTTGATCCAGAACGAGTAAGGTCTAGCCGAGCGGCCAAGGAGACCCGCCCAGT
CTAGCTACGCCCCTTCGAAGATAAGGAGCGGATACGCCCAGCATAACCGAGCCAAAAAGGCTATT
CCCAATCAGAGATTACTTGTAAATGGCCTCTGCCTTGATCCAGCT
Found at i:215598 original size:13 final size:13
Alignment explanation
Indices: 215580--215605 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
215570 GTTTATCAAT
215580 TATTCATGAAGAA
1 TATTCATGAAGAA
215593 TATTCATGAAGAA
1 TATTCATGAAGAA
215606 CTTCTGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
TATTCATGAAGAA
Left flanking sequence: Indices 215080 -- 215579
TCAATACATTTTTCTCAGCCTACCAATAGGCCTAGTTCCTCTATTCTATTCGCTGCTTCGGCATC
TTTCTATTTACAAGTCCTCTTCTTTGCGAAAACAGAAAGCTAGTAGCTTCTATGATGATGACAGT
TTCAACAATTGAAATAGAAGTACAATCTACTAAAAGAGTTAATTGCTTACAACATAGTTGTCTGA
ATCTGACGGGTACCTGAGATCCCTTCAGCGGTTCAGCGGTTGGTCCTGTTCCGCGTCCGTCTTTG
TCTGCAGTTGCATTATCCCCGAAACAAGGGGAGAGAACAGAACGTAAAAATGACTTCCACGTATC
AGATGATTTGGCAAAGAGTCATCGCCCGAAAGCCCTTTCTATTTCCATTGGTCGAAATCACCTTC
CTATCCGAGTCCGTTAGCGAGATGGACCGCCCTTCGCAGCTATGCTGCTCCTTCTTTCCTAAGAT
CCGAGGGCTAGGATCAAGTATCGAGATCCTAGTGCGTTTATCAAT
Right flanking sequence: Indices 215606 -- 216105
CTTCTGAACTTTTGACCCTTCCATCCGGCTTTTAGGTCTACTTCTGTTTTTGATTCTAGCTGAGA
AATTGCAATTAAATATCTTTATTCTATAAAGCTGGAGCTTTCTTCTCGATCTCATTCACACGTGA
GACTTTCTAATTCCTTAGCACGTCGATGAGGTGAGGGTGGTTCGGATGGGGCCTCTTCGCCAGCA
ACCGACTCTGAGAAAGTCAACCCCTACTCCTACGTCGTCCCCTGAGCCCTTTCGTCTCATCCCGT
ATCGGCGCCTATCTATCTATTATACCTGCCTATCGGCAGAAGCCATCGCCTAGATATATCATTTA
CCGGTTCGGAGTTTAGACAGACTAAAACTCCTCCGGATCGACTCTTTAAAAAACAAATCGTTTCA
GTACTTTCCGTGGAGGTCTTTTTCTCGTCTTTGATTGTACTGGTATCCCCCCATCACTCCTTCTG
TCCGAAGGACTTCTAAATGAAATAATGGCTTTGGCCCTCAAAAAA
Found at i:264824 original size:22 final size:22
Alignment explanation
Indices: 264796--264839 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
264786 AGCTCAACTT
264796 CTCAACCGGCTTTAAGGGATGG
1 CTCAACCGGCTTTAAGGGATGG
264818 CTCAACCGGCTTTAAGGGATGG
1 CTCAACCGGCTTTAAGGGATGG
264840 GAGGAATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (22 bp):
CTCAACCGGCTTTAAGGGATGG
Left flanking sequence: Indices 264296 -- 264795
CTGACAGATATAGAAAAGAGAAAGTAAAGCCCAGCAGCGTAATCGGGCTTCCTTCAGTAGCTCCG
CGCAAGTTGAGTACTTTTCGCTCGTCGATTGCCGACGTGCTATATAACAATGGGGGCCCGTATTA
TACATTCTTTTCATACTTTACTTTAGTAGCGCATACTTCTCAAACTAGGCTCGATAGACCTTATT
GGTGGGAGCGGGATTCCTTGGCATCCGTTCACTCTGCTGTCGTTACTTTTAAGGCCTTCTCCCTT
TTCGATTATCGTTTCGATGTTCACATTTTAGTAATGGGGATCATACGTCTCGGGCAGAGATGGCT
GTTATGCCAAGATTCGAATAACAAAGAAAGGTGCGAACGAAGGCTTTGAGGAGTTTTCTTTCTTT
TAAAGAAATTCAAGTGAAGATCAAGCCAGCCATCTCATGTAAGATGTGGGTGAGTCGAAAGAGTT
AATCGCGAGCAGTAAATGAAGATTCGGAGATCAGTAGCTCAACTT
Right flanking sequence: Indices 264840 -- 265339
GAGGAATCTTTGGTCTAGCTTGAGAGTTTCAACTCCGATCCTCTCCTTAAGAGCTTTCTTTAATA
GCTCGTTTTCGGGGGTTTTAGAGTTAAGAGAAGTAGTTAGCCTTCCTAGACGCTTAGAATTATCA
GAAGTGACAGAAAGGCTAGGCTAGATTCTTAGCGCTGTTGAACTTGCGACTCTACGCACTTAGGC
TGTCTGGGCCTTGGTTTAGTAACGGTTTCAAAAGGAGAACCATCTACTATCAATTCGAAAATTGA
ATACTTAGCAGCAAGAACTCTCTTCCCGTCACTTGCATCGCTTACTATTATTAGATACCGAAGTC
TATCCAGATAAGCTGACTTTCTAGTTTCAGTATCAGACTGAGATTCCTTTGGCTCGGCTGTTGGA
GACGAAGTAGATGAGCCGCTAGGCGAAGGGGACGAAACTCTGGGCATTTTCAAACTCTCTGGTTT
AGCAAGGATAGATGGAAGAGAGAGTTCGATGCCATTACTTAGTCA
Found at i:288370 original size:13 final size:13
Alignment explanation
Indices: 288352--288377 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
288342 CTCAATCCCT
288352 TAACTCGATTGAG
1 TAACTCGATTGAG
288365 TAACTCGATTGAG
1 TAACTCGATTGAG
288378 AGATAGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TAACTCGATTGAG
Left flanking sequence: Indices 287852 -- 288351
AGGGCAGTCTATATTCCTGATGTTCGAGATAAAAATGATTCCAGCTTTTGGGGCTTGACTTCGAA
TGGTTCCTACTGTGGGTACAATTCTTCTACGCTTAGAACTTCCTGCATCAGCCTCAAAGCCTCTC
GGTTCACCAGAATCCTATCGACCGTATAAGCACTTTACTTTCGCTTAGCCAAACTACCAATTCCC
GTTAGCAACTGGACCCCTATCCGCCCATACACAACAACAACTACCTTTATTCCACACTCTTTTTG
TCTATCTAAGTTTCCTTGCCTATTCAAGAATAGGTAGGAGTTGTACCGGAAGAACCAATCTTATC
GAACTCGCTAGCCGTAACCGCTCTTCCAGAACCTTTGCTATCTTCATGAACGGGCTCGGCATTTC
TTATGTATTTTCTTGTCCAACTAATTAGTCTTCAACCGAAGAGGGATCCAAGAATGAATCCCAAT
CTAATACTGAATTTCCTGCCCGAAGCAAGAAATAGCTCAATCCCT
Right flanking sequence: Indices 288378 -- 288877
AGATAGAACTACTCTACTCACGAGAATCAGTCTTTCAGCCAGACAGGTTAGTTGCCTCATGAAAG
TAAGTTCGTTCAGGAAAGACTAAAACCTCAAACCTGACAGATGCAGATGAATTTTATTGGTAAGC
TTTAGAGTTGGCTTTTCATTTCATCCCCTCAAGTGCCACATCTATCAAAGGGAAGAGCTCCTTCG
AAAGCTGCTTCTCTCTCAACTCCATACCCGAAAGCGGATGAGAGGGATGCAGATTCTAATAGCGT
AGAAGAAAGAGGACGAATGGTTCGCTGATAAGCTTATGTTGGGCATATGGATTCGACTAGCATTC
ACGTAGGTAGCATTTGAATGAAATCTGTAAGTAAGTGTCCAAGAATCATCGATTTTGGGGTTACC
AGCTCAAGTAATGGGAATTTCTTTAAGTAAGAACGATCCCCAGTGTCATCCTCCAATTTAGCTAT
GTTCGGGAGAAAACTTGCTATTGACGAAGTTCTTATTGGACTCGC
Found at i:295560 original size:11 final size:11
Alignment explanation
Indices: 295544--295584 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
295534 ATGTCTTATA
295544 TATATTAAGAT
1 TATATTAAGAT
295555 TATATTAA-AT
1 TATATTAAGAT
295565 ATATATTAAGAT
1 -TATATTAAGAT
295577 TATATTAA
1 TATATTAA
295585 AAATGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.07
11 24 0.86
12 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (11 bp):
TATATTAAGAT
Left flanking sequence: Indices 295044 -- 295543
CAATCCCTAAAACGGACTATGTAATGTACTTTATCCGCTGGGTTACGGGGGGCATTTTACCAGAG
GTTTATATTGTATCAATCTACCCTTGTGTGCTTGTGTGTGTGATTCCTGTTGAAGCATATACTCG
GGGGTGGGTGCAGGGCGAACGATTTCAAAGCGGACTTCCTATTCATTAGATAGAGAAGATCACCA
AGATCTCGTGATCCGCTTCCGAACTTATTCCAATTTAACGAGCATTCTCAATATTATGCCTTGAA
GAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCA
CCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGTATGGAA
TATATGACAAAGGTGGAGTGTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGAGTCG
GACATCCAATTGCTTCGATTTGAAGTATCCGGAGGATGTCTTATA
Right flanking sequence: Indices 295585 -- 296084
AAATGAAAAAGATGGACAATCAAACCTATTTCTTTCTCGATTCAATAGAAGAAAAAAAGAAAAGA
GGTGAATAGGGTCCCAAATAACGAGAGATATGTAAAAAGAAGGCCCGATTACGCCCATTCCTAAT
CCTAAATGGAATGTAACGACGTAGGGATCCATATGTAAACATAGTATCTGTTTAGATACGCTCGA
ATGACCCCTTCTCATAATGAGAATGTATATAGCCCTATTCCGGTCTGGTCCGGTATGGAATGAAC
TTATAATCATGGAATCGACTCGATTCCATGATTATAAGTGAATAACCCTAGCCCATTCCCATTTT
GGGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAAGAGGGACCTTGAACTAAGAAATA
GATTCTAGAAGCTAACTATAAGCTAAACTAAAAAAGGGTATCCTGAGCAATTGCAATAATCGGGT
TCATTGATATTCCTGGTACAGTAGATGCTATCACACATACAATCA
Found at i:295569 original size:22 final size:22
Alignment explanation
Indices: 295541--295585 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
295531 AGGATGTCTT
295541 ATATATATTAAGATTATATTAA
1 ATATATATTAAGATTATATTAA
295563 ATATATATTAAGATTATATTAA
1 ATATATATTAAGATTATATTAA
295585 A
1 A
295586 AATGAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
ATATATATTAAGATTATATTAA
Left flanking sequence: Indices 295041 -- 295540
CGCCAATCCCTAAAACGGACTATGTAATGTACTTTATCCGCTGGGTTACGGGGGGCATTTTACCA
GAGGTTTATATTGTATCAATCTACCCTTGTGTGCTTGTGTGTGTGATTCCTGTTGAAGCATATAC
TCGGGGGTGGGTGCAGGGCGAACGATTTCAAAGCGGACTTCCTATTCATTAGATAGAGAAGATCA
CCAAGATCTCGTGATCCGCTTCCGAACTTATTCCAATTTAACGAGCATTCTCAATATTATGCCTT
GAAGAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCA
CCACCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGTATG
GAATATATGACAAAGGTGGAGTGTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGAG
TCGGACATCCAATTGCTTCGATTTGAAGTATCCGGAGGATGTCTT
Right flanking sequence: Indices 295586 -- 296085
AATGAAAAAGATGGACAATCAAACCTATTTCTTTCTCGATTCAATAGAAGAAAAAAAGAAAAGAG
GTGAATAGGGTCCCAAATAACGAGAGATATGTAAAAAGAAGGCCCGATTACGCCCATTCCTAATC
CTAAATGGAATGTAACGACGTAGGGATCCATATGTAAACATAGTATCTGTTTAGATACGCTCGAA
TGACCCCTTCTCATAATGAGAATGTATATAGCCCTATTCCGGTCTGGTCCGGTATGGAATGAACT
TATAATCATGGAATCGACTCGATTCCATGATTATAAGTGAATAACCCTAGCCCATTCCCATTTTG
GGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAAGAGGGACCTTGAACTAAGAAATAG
ATTCTAGAAGCTAACTATAAGCTAAACTAAAAAAGGGTATCCTGAGCAATTGCAATAATCGGGTT
CATTGATATTCCTGGTACAGTAGATGCTATCACACATACAATCAT
Found at i:332093 original size:22 final size:22
Alignment explanation
Indices: 332065--332109 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
332055 GAAAGGTCTT
332065 ATTAAACTACTTATAGATAGAA
1 ATTAAACTACTTATAGATAGAA
332087 ATTAAACTACTTATAGATAGAA
1 ATTAAACTACTTATAGATAGAA
332109 A
1 A
332110 AAGGGCTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (22 bp):
ATTAAACTACTTATAGATAGAA
Left flanking sequence: Indices 331565 -- 332064
ATCACAAGACCTAGTCCATATTCTCCAACACGTAGAATGGTCCTATCCCCTTATCCGTTTACCCC
TTCAAGCATCAGACGATTTTCCATATTGAAATCCTCTTGTTGTTAGGATTCTTTTTCCTTAGCCG
AAGGGAAGCACTAAGACAGAGTCTGCAGCTGGTAAAGGAGGTCTTGTATAGCTTTCAAAGAAAAG
AGCTTTTTTTCCTATTCTTACACTGCTGGCACTTCATTCATATGTATGTATGGTAACTGAGGCTA
CCTCGTCGTCTGATGTTAGTATCCCCTCATCGTCGTCGAGGTTATTCCGACAACAGCTTCTCTTT
CAACCGATCCAAGATGTCACTTAGATAAGAGATGTCCCTGAGACTCGTACAAAGAAGAAGACAGA
AGCGAAGTTCCATGGCACTTGCCTTCCCTTTGGAGTCCAATCGGTCTGAATTGAGTCATTAACTA
AAACTAAGGACTCGGGTTTTTAGAGATCAAGCAAAGAAAGGTCTT
Right flanking sequence: Indices 332110 -- 332609
AAGGGCTGAGAGCGAGGGCCCACATTGTCTCCATCAGCGGCTAGGATCAAGACTTTGGCCCCTCT
AGCGGTCTCAAAAGGTGGTTTTTGTATTACCAGTCAATGGGCTGATACCATGCGTGTTTACAATT
AAAGTGGCTTTCTGCCCTAGGGCTGCTACACTATGTATGTAGGCCCCCGGTCGGACTGCCTCGGG
CACATGCTCGGCTTCGTCAAATCCCTAATAATGAATATGAGGCTAGCTTTATTCACTCATATGAA
CTCCGGAAGTAAGCACTATCTTTGCTTATATACTATACGCAATTGAGATCTCTGGACCAATGCTT
GCTAGCGGTATGTGAGCTTACCTCTGCCCCCTCACCTCCTAGGGACCTACAGCTCCAAAAAAGGG
AGATTTTCGCATTTCGGGAAGGGAGTGCAAGACAAATTATTGAATAGCTCCTATTTGTTGAATGG
ACGAATAAAACCCTCAAAAAGAAGGCTAGCTAAAAGTAGTTAATG
Found at i:350821 original size:15 final size:15
Alignment explanation
Indices: 350801--350831 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
350791 GGGGCTGCCA
350801 ACTAATAAGTCTATT
1 ACTAATAAGTCTATT
350816 ACTAATAAGTCTATT
1 ACTAATAAGTCTATT
350831 A
1 A
350832 TCAGCAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (15 bp):
ACTAATAAGTCTATT
Left flanking sequence: Indices 350301 -- 350800
GGGGGTACGGATCTCTACATGCAATTAGCTCACGATCGATAGGCATAAATCGAGACTAAGAATGG
GAAGTACGGCTGAAGATCTCTTTTTCTTCGCCGAGAAGCGGTATATGAATATCGACAGGTGGCTA
GTATTCCAAGTAAATTGGACTCAAAGTCCTATAGCTCAATGAGTGAGCAAGGGTAGGAGGATTAC
ATGTCCGTAAGATAGTATGTCGGATGGTCGTAGGCTGTCTTTAGAAAGTTAGACTCACTTCCCGG
ACTATTCGCCTTACTCTTTTGCTTCTTCGCCTTATGGTGAAACCTCGTCAATAACTGTCTCAATC
TCAGTGCTTGAATCTCTGCAACATTGTTCGAAGAGAAAGCCAAACGAGCATGAAAGCCGATTAAC
CATTTTCAGTCAGAAGATCGAATGAGTCCACCAGCCCCTTAAATTCCAGGGTTCTCTTGTAAAGC
TCCATCAGTGTAGAGCCTAACTGACTTGCTCTCAGGGGGCTGCCA
Right flanking sequence: Indices 350832 -- 351331
TCAGCAATTGCAACCTTGGAAATGGAGTAAGCTTTCGCAACCTCCATAGCCGTTAACCTGATGTT
CCTTACAAAACTTGCCTCGTCCATAGCCTCCTCCTCTTCATTGAAGATAAGGCTGCACCTTCTTG
TCCATAATCGCCAGATTGTCACCCCGAAAACAACTTTCCAGTAGATGTCTTTTGATTCATGGGGG
TTGCTCTTCAACCAGTCCGTGAGAGGAAGATTAAAGAAGACGCTCCTTTGCAACACCTCTTTCCC
ATAGGAAGATAAGCAAGCGGGTGACTTAGCCGATAAACTGTATTTTATGCTATCTGGCCGTGTCA
ATTATGAATGCTAGCCATCCCAAGAAAGATGGACCGAAGATGCTTTTAGATAGGAAGCAGGGGAG
TCTGTGAAATCCCTCTCTCTGGTAGAAAGACCTGAAAACATGCAATCAGAGGAGATAGATCCAAC
CCCGACTACTAACAAAGAATCCCAATCCAATACTGATAAATCAGA
Found at i:488035 original size:14 final size:14
Alignment explanation
Indices: 488018--488046 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
488008 ATTCTGTTAG
488018 TTCTATTATAACCC
1 TTCTATTATAACCC
488032 TTCTATTATAACCC
1 TTCTATTATAACCC
488046 T
1 T
488047 AAGCCTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.45
Consensus pattern (14 bp):
TTCTATTATAACCC
Left flanking sequence: Indices 487518 -- 488017
TGCATAAGTTCTTGCCACAGGTACGGAAAATGAAAAGGCAGAGATAGCTCGTTAAGCAATAAAAG
CAGAAAGAATAAACATGAAAACAGCTAATAAACTCCAGTCGAACCAGGATTCGATGTTGGAACTT
TTGCCATTGAATTCATTTAGTATGAGTTGAGATGACTTGATTCACTATGAATAGAAGCATGATTG
ATGCGAGTTCAGGTCATTTAAAGGACTGACCTATTACCCTAACCCTCTTGTTTAGAGGTGAAGAA
GAAAGATAGTTTATTTCCAATTCAAATGCCCCTTCTGAATCTGTTTTTTCTCTGGGGGGTTCCGA
CTCGTACTCCGGCGTATGGGTTTAAAGAATAGGTCCCCTCTGGAACTTAACCCTAATTGTAAGGC
TATAGGTTTAAGGCTAATCGGTTGTTTATTTGATTGTTGTACTGTTTTATTATCTCAGTAGCTTT
TAAACCGCAGTTTTAGGGTTTTATTTTTATTGTTTATTCTGTTAG
Right flanking sequence: Indices 488047 -- 488546
AAGCCTAAGGAAGAACTAGGAAGTGCTATCTTTCTACCAGCATGATAGCGGAAGTCTCTTCAAGA
CCAAATCTCCTACTTCCCGAACCGAAGCAAAGACCAGAAGCTCTATCGGAAAGACTTATTCTAAT
ATGGAAGTCTGCCTCCGAACTTGCTTGAACTGAAGGGGTTTTAGAATCCTAATCCAATAATAAGG
AAGACCCAATAGTCTGCGCACCAATCCAACCAAAGATTGAACCTGTCTCAGCCACCAACTCAGAA
CCGGTATGAAACCCGAAAGTGACTTAATCCCTGATTCCCAAGTCTGAGGAGCAATCTCTTATATG
AACTTGCATGAGCTCGGTCGTGAGCCATTAAGTAGTACGTCTCATCTCCCTTCGCAGAGGGGTAG
CCGACCGAAGCAAGAGAAGATTTTTCTTCTAGAAAAAGGAGAGGTAGCTCTTCATACGACTTGAA
AAAAACAGGAAGTGAGGATTTCCCGAATTGCATATAATGCAGAAA
Found at i:495054 original size:21 final size:21
Alignment explanation
Indices: 495025--495069 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
495015 AGTTGGGTCG
*
495025 AGCCCGGCTAGATGAGCCCGA
1 AGCCCGGCTAGAAGAGCCCGA
*
495046 AGCCTGGCTAGAAGAGCCCGA
1 AGCCCGGCTAGAAGAGCCCGA
495067 AGC
1 AGC
495070 TTGTGAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.09
Consensus pattern (21 bp):
AGCCCGGCTAGAAGAGCCCGA
Left flanking sequence: Indices 494525 -- 495024
ACCTTTAGCTCGTAGCCCCTATTGGTCAGAAGGGTTATTCACTTGGAGTTGCTTGGTCAGCAAGC
TCGGTAACATGAGCAATAGCCTGGTGTGAATCCGATGAGGCAGTAGGTGCCGCAACTACATCCCC
TCCCATCGCAAAATCCTTATGGATGGATAAGAACTTCACCCTCGCCCATAACAAGGTCAGGCGGC
TTTGGAGCAGGTTGAGAAAGAAAATCAAGAAGAACTTGTTCGGGAGCTGCCAATCTGTTCTCTAA
CGCTACTTCCTCTCGAGGTATTTCAAAAATAGCAGAAGGTGCTTTAGGGTTCGGATTAGGCCCAA
ATGATACGGTATTCTTGGGCAGACAGGCTGCAATATCTTTAATAGGTTGGGTTTGGGCTTTAGAA
TCAATGGTTATCTTACGAAAAGACCCAGACTTTTATTGGGTAGGGTGAGAGTAGGGCTTAGCTCT
TTCAATTGGCTTATTCTTGACCCGAGACTTCGAAGAGTTGGGTCG
Right flanking sequence: Indices 495070 -- 495569
TTGTGAGGTTTTCTGTGCTGAAGCATTTAAAGCTGAATTGGAGACAAACTGTGTTTCAGGCACAA
ACTGCGGTGAATCTTCATCTTTGCTTTCTCCTTCCTCGCCTTTTCTTTAACTTCCTTGAAAGACA
ACCTTGCAAGGAAGATTGGTTATTGTCGGCTGTTACCATCTTCGACTTATCACCTTCTTCCTTCT
CAATGCTGCCTGAATTCTCGGTTTGTTCCGGCACCGGTGTACGGCTCGGGCATTTCTACATTCGG
TGGCCAACAATGCCACAATGAAAACAAACAGTATGCAGTGCTTCATATTCAATAACCTGGGAAAG
ACCCCACACTTGACCCCGAGACACCAATGGTTTGGACAAATCCATCTCCACGCAAATCCTTTGCA
TCATGGCTTTATAGAGTCCTACACCCCTTCTTGTAATAACAGACAGCGAAATACGCTCCTAGGAA
GACTCTTATTTCAACCTTGCCAATCTCTCTTAGCTCCCTAGCCTT
Found at i:543623 original size:15 final size:15
Alignment explanation
Indices: 543603--543632 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
543593 TTCCACACGT
543603 ACCGGAACCGGTTGA
1 ACCGGAACCGGTTGA
543618 ACCGGAACCGGTTGA
1 ACCGGAACCGGTTGA
543633 CATACCCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.33, T:0.13
Consensus pattern (15 bp):
ACCGGAACCGGTTGA
Left flanking sequence: Indices 543103 -- 543602
AGGGATTTGGATTCTAAGGGGCTTTGATTTGGGCTACGGGAATTGAAAATACCAAACTTGGATAA
AACCCCGGGAAAAGGCGAACAAAAGAGCACAAGGTAAGGGCTCACAGTTGTAGAAGTAGAATCAA
ATGTCGAGGAATCATCTGCTTTCGATTCAATAGGGGTTGTTTCAGGATCTATCCCATTTACCAGA
AGCCCTGAAGATGGAGAACTTGCATCAACCGGCTCGTCATTTATTATTTCATCTAGTTCGCCAAT
CTCCAACTGGAATGTAAGCGTACTCATATAACCCAAATTTATCAACTAAGGGGATTCCTATGAAC
TTTGAATTCAATTCCATTTCTATCTATCTCACATATGGGGTCTTTAGAGCTTCCCCTTTAGGCGA
AAGAGAATAAATGGCATCTGATGAATTAGCGGAGGGAGGAAACCCAGGGGAATAAAGCAATCAAT
CTCTTCTCTCAAGCTAGCTCGTGGAAAGAAACCTCTTCCACACGT
Right flanking sequence: Indices 543633 -- 544132
CATACCCATATTGGAGCCCCCACTGCTTTCAGATGAATACCGTAGTCATATTCTGTATATACGGT
ATGGCATTTTGAACTTCGGGGGGGATGATAGCCTCCAGCGCATGGTTTCAATTATAAATAGACAG
TTGGAAATTGAACGCGCTGTAGAAGCCGCTTTAGTAGCAGATGGCTTTCTACCCGACTCGATTTT
AGAGAGGTATGCCCAAATTAGGGGACTTATACATAGTCCGCGGGGCTCACTTTTAAGTGAGCAGA
CCTATCTTTCTTATCTAAATCAGATAAGGGAGCGCGGGACACGAGCAAGCGTTCCCTATCGCCGC
GTTCTGCAGAACTATGGCAACTTTAATCTGCTGTTAGAGCGTGAACGGCGATGATCTTATTCGTT
TTTTTGATCAATAGAACAGGAAGAGGAGGAAAAAAAAGCTTATGATGAGCATCTATTTGAGTCGA
TCATTTCCGAGATCTAATTCCAGTTTTTTCTTATTACGTGGAAAC
Found at i:579550 original size:21 final size:21
Alignment explanation
Indices: 579524--579586 Score: 126
Period size: 21 Copynumber: 3.0 Consensus size: 21
579514 GCTCTCCTCT
579524 TAGTAGGGTAGGGATTTTAAA
1 TAGTAGGGTAGGGATTTTAAA
579545 TAGTAGGGTAGGGATTTTAAA
1 TAGTAGGGTAGGGATTTTAAA
579566 TAGTAGGGTAGGGATTTTAAA
1 TAGTAGGGTAGGGATTTTAAA
579587 GGCTCTCGCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (21 bp):
TAGTAGGGTAGGGATTTTAAA
Left flanking sequence: Indices 579024 -- 579523
CGGTTTGGATGGCCGGTCTCCTCAAAGCCTGCCCGTGAGGGTAGGACCTAGTCGTGAGTCTAGGA
AGGAGTAGCGCATGCCAGTCGAAGAAGGTGGCTCCATACCATATAACTCTTGTCCATTACGAAAG
CCAAGGGGAAGAGCAGAGGGGAAAGCCTTTCTGTCTTTCCCTGCTTCTGAGAGATGGATAGATAG
GTATAAGATTCCGAGAGCAACTAGAGCGAAAAGGATTAGTCCGACCCTTGCTTTACTAGAAGTAC
GGAAGGAAAGAAGGAAAGGCAGAGCTCCGGTATCGCATCGGTACCGCGGTCAGTGCAGCAAGAAC
CTATAGGCTACTAGCACCTAACATTCTCTTAAGTGTCTGGTTGCTTTTTAGGTTAAGGCTAGCAA
ACGGATCGTATCGCGAGGCGGTGGGGCAGGTTACTAAGGCAGTAGAGCTCCTAACGCAGACTTTC
GTGTCTAGTTTTTAGGGTTCTTATCCTTAAGGAAGGCTCTCCTCT
Right flanking sequence: Indices 579587 -- 580086
GGCTCTCGCTCTTGCCCCTCTTGTTTTCGTCTTAGAATCTTATACCATATCCCATTACTCGTGTC
TCTTCTTTCTATACGAAATACCCGCACGCAGGAAGTCAAGATGGGCTAGGTGGCCTGGTCATCAG
CGCGGTTGCTCCCCGTATCTCATGGAGTGGGCCATGGATACTGGTCCGTGAATCCGCCGGTCGAA
ATGCAAGTGTGTGCAGGTCAAGCTCATTGAATTTGGTTTTCGTTTGGAAATAGCCATGTACACAT
TGGAGTCTACCTTCTATCCACAATGGAAAAAAGTAAGCCTCGCGAAGAAAACCCCATGACAGACC
AGAAGTTTATCTATCATAGGAGGATGGGTCGCCACAAAGCCTAGCCGTCAGAAACATACAACAAA
CTCAAGAAAACCAACTGCAAAAGGCGCTGGAAACAGGTCGAAATACGGGGCGGAGGGTGGCGGAT
TTGATCATCCTCTGCACGTAGGGATCCGGGGCACCACCCAGAAGC
Found at i:582573 original size:15 final size:15
Alignment explanation
Indices: 582553--582586 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
582543 AGCGTAGCGG
582553 ATATTTCATCTAGCT
1 ATATTTCATCTAGCT
582568 ATATTTCATCTAGCT
1 ATATTTCATCTAGCT
582583 ATAT
1 ATAT
582587 AAGGCCTCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (15 bp):
ATATTTCATCTAGCT
Left flanking sequence: Indices 582053 -- 582552
CTCTGGAGCGGAAGGCTTCTTTCGGTTATATTACAGTGATTGTCTTGCCTAGTGAAGCTGCCACT
AGGCTTTGTTTGGCATGATTAGTTATCGGCCTTACTTCGCATCTTCGCCTGTAGGCTCCTAACGT
TCCTTATGCGGCATTCATTCCGATGATACAGAAAGGTCTTTCAGAGCCAGAAGCACGAAGCAGAT
CAAGGGTAGGACTCTCCCGCGCATAGACTGATTCTCTCACCGGCATACTTGACTTCCTATCTTGG
CTTGATTGGCTTCGCCACCTTATCTTTCCGCTAATCTAATAAAGGGACCGGGCCAATGCTTGTAT
TCTAGCAGCAATCTCGCATACATAGATATGGTCTTCTGTTTTATGTAATCTCAACATAGGTCTCA
CCTGCCATTGCTGGATCAGCGATTTCGGCTTTGCTTGTGGTTCCAGTTGAAGTTTAAGAGTTGCA
TAGCCAGTTGTTGGTTAATTGACCGTCCTCTTCTTAGCGTAGCGG
Right flanking sequence: Indices 582587 -- 583086
AAGGCCTCAGCTGCCTTATGAGTATCGACGAAGTTCAGTCCGAGCTACGTACGAAGTACTCTTTC
GCTTAATTAGTATTTCACTCGGGGGGATCATGAAAAATAGCCAACTTTTAAGATTTGAGATCCTA
CTTTCAATCAAAAATCCCTGTCTTTCCTACAAGTTAACCGGATAGCATGTATCCGTATGGGAGCA
CCTCTACCGGATCACCTAAAAATTGCAAAAGCAACTGCTCCTCCAGAATGGCTGCTGAGCTCTTC
CGCTTGTATAGAGAAGGCTTCGGAACCATGAGTGGCTGGACCAATAATGTGCTTTCAATAGTACG
GAGAAAGAGAGTCTACGAGCCAGTGCTAAGTTAGGGGCCCGACAGCACAGCCGATGACTAGAAGA
AAACCTTACTTTAGTTCCGAGGGCTTTCTAACCTCCCTCACAACCAAGTCAGGGATCTCAGGTAC
ACATCTGGGAAGTTAGGTCGGGACTAGAAGGAATAGAGCTCCTAC
Found at i:631754 original size:13 final size:13
Alignment explanation
Indices: 631721--631755 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
631711 TGATCTGTCT
*
631721 CTGAGATACGTAC
1 CTGAGATCCGTAC
631734 CTGAGATCCGTAC
1 CTGAGATCCGTAC
631747 CTGAGATCC
1 CTGAGATCC
631756 CGCCATGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (13 bp):
CTGAGATCCGTAC
Left flanking sequence: Indices 631221 -- 631720
ACTGGCGGCTTAGAGCATAGGTTTTGAGTTAGGACTTATCCCGATAGTAGAAGAAAAGGGCTTAG
TCCGACCTGCTCCTTGGTTTACTGCTGGAACTGGAACTAGAGAAGCGAAAGGAAAGGTATGTCTC
ACGATCTAAGGGAAAGTCTTGGTATTTATCTTCAACTGTCTTCCTTGGGGTGATCTCTTAATACG
GGGTGGAGTCCGATACACCATCCCTACGAAACCTGACACATTGGAACAGGTCCTTGGAAGCGGGA
ATACCTATATTGAGGTGACCAATGGAATATGATATGCGAGGCTCTAACCGCTGAGTTACTTACGT
TGGGCAATAGAGAAGAAAGGGGCTAGGGCAATCGCCTGTTAGTGAATTTCTATTTGTAACGGTAG
AAAAAACAATCTGTCGCAGTAGCAGTAGCCTTCTCTGTATCACTCCTTTACTTAGTATGAAATGG
GCTCTCGACCCCGGCCTTGCTTACCTGTCTGTCTGTGATCTGTCT
Right flanking sequence: Indices 631756 -- 632255
CGCCATGGCTGTCTGGCTGGCTGGCGGTAGGAAGTTCGGTTCCTTTACTGGGTATAGGTCTTGCA
TACAATCCCTTGTTTCGCTTTCTTTGTCGGCCTATTTCAATCGAATCTCTTGCAAACCCGGAGAG
TCACATCCACCGAGCACCAAGCCAGAGAGGACCCATGCTCCAAGGCCTCATTCACAACTTTCAAC
AAATCAGCCTTATGATAGGTAGAGGAGCCGAGCATATGCTTTTGTCAAGTGCCTAGCAAACTAGG
CTAATTGTAGGAGGACTCCTTTGAAAGACTTTTAATGCGTGGCTGCTACTTTAGCAGTTGAATGG
GGAATTGATTTTGTTCTCAATACGGAAATGTCCTTAGAGCGGATTGAATACCGATTTTGGTTCCT
ACCATGTCGAATCCCAGAGATTTTGGAAAAAGCCCGCATGGAAACCATCAACACCGGGGACCTTC
AAGGGGACTTGGAATACTAGCCACCTGTCGATATTCATACAAGGT
Found at i:656040 original size:18 final size:19
Alignment explanation
Indices: 656017--656052 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
656007 CAAGCTAGCC
656017 AAGAGGGAGT-GTAAAAGA
1 AAGAGGGAGTCGTAAAAGA
*
656035 AAGAGGGATTCGTAAAAG
1 AAGAGGGAGTCGTAAAAG
656053 CAGCCTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.47, C:0.03, G:0.36, T:0.14
Consensus pattern (19 bp):
AAGAGGGAGTCGTAAAAGA
Left flanking sequence: Indices 655517 -- 656016
TCAGCCAAGTTACATGCACTAATCAAATTGAAAAACCTCAAGCACCGCTCCAAAGACACACTAGC
ACCACCGAACTTCTCGCTACTACTACAGACATCATTGAAATCGCCTACCATTAACCAAGGCAGAG
CGACTTCTGAAGCAAAACTTTCGAGCAGAAGTTATCTTTCTGACTTTACTTAGAATTAGAATCAG
TAAGAGTTACGATAGATTCAGATAAATATCCTTCGTACAGTTCGCTGCGTAGCGGTGAACCTCCA
TTCGTCCTGTTCGGCATCTTCCCGGCCAAACTTCTTACATATTTCCCTGGAAAATATCGTAGAGT
CGAAATGTAGCTGAACTCTCAAGGGGAGGAGTGATCAATTGAAAGAACGAAGAAAGTTCTCATCG
GTTGTAAAGCAATCCTATTCTGAATATGATTTATTGAATTCAAAGATGTTAGCGTAACATTAGCT
AGCTGAAAGAGTTTGAGTTCTCTTCATTTGTCCATCAAGCTAGCC
Right flanking sequence: Indices 656053 -- 656552
CAGCCTTCTTTCTATCAATTGAATAAGCCCAGTGAGTTGAAGAAAAAGAAAGGGATGGATGGCAG
GAGAAGAAAAGGAAGAAAAGAAGCACATATCCAAGTCGAATCTCCTGTCTTAGGAAGAGTGCTCA
TAGGCGCTGCAGGCGGGCATCGAACCGGGGCTGTGGTCAATATTTGAGTTGTCGGAGATCCTTCA
TCCCTTTCCCAACAACTAGTAAAGCTGCCTTTCTTTGAATTGTTGAGAGACGGGCGAAAACAATA
GATGTGATATACCGAAAATAAAAAGGTAGAGGAGGCAAAGCACCGTAATCGTAATGAAAGTTCAG
ATCAAGTGCCAGAAGAAATGGTCGACTCTAAATCCGGATTGGTTTTCATCGAGAATGAAAGATTT
TCTCTCCTCTCCCGGCGCCGAACTACTTTTTCCCGAGTCATTCGTTTCCTTAAGCCATGTCCATA
CTAAAAAGCTAAATCGTATGGTGACTAGATTCATTCCTCCGCACG
Found at i:660664 original size:57 final size:56
Alignment explanation
Indices: 660576--660688 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 56
660566 CTTGAACCTC
660576 TAGTCGAACTGTCTTTAGAGCTTACTTTCTATCCGCTACGCTTAGAACAGCCCGAA
1 TAGTCGAACTGTCTTTAGAGCTTACTTTCTATCCGCTACGCTTAGAACAGCCCGAA
660632 NTAGTCGAACTGTCTTTAGAGCTTACTTTCTATCCGCTACGCTTAGAACAGCCCGAA
1 -TAGTCGAACTGTCTTTAGAGCTTACTTTCTATCCGCTACGCTTAGAACAGCCCGAA
660689 ACTGGGATTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (56 bp):
TAGTCGAACTGTCTTTAGAGCTTACTTTCTATCCGCTACGCTTAGAACAGCCCGAA
Left flanking sequence: Indices 660076 -- 660575
GTTTTCTAAGAATGTTAGAGTCGAGTTATGGTCAAGGGGTAGCTCAATGGATCCATTAGAAGCAA
GTTTCCTTCCTTAGGAACGCTATTGTGATATTGAATGTCCATCTTCTTTTTGTAGATATCATGCC
GGTTACACGCCAAACCGCTGGACGGGGCCGCGGTGGACGGGGTCGTCATGACAGCAGAACTCGGC
AAACCACTCAAGCTCCCACCTCCGCCTCCGGTGGGGCCTGGGAGGCATCCAACTCTACATCCGGG
GAAAGGTTATCAAGAGGGGAAGCTGCAATTCCTCCTTAAGAATGGGGAGCATTACCTGTAAGACT
AGAAGGGTACGAGAGGTCGTAAAGAAGAAGAAACCCCTTCACTTCACTCAGGGACTAGAAAAAGG
AGAGACTACTTGCTTCCTGCTTCGGGCTTCGGGCTTGCTTGGAGATGTGCTTTCACATTTAAGCT
TTGGCTACTCAACAATGGCTTAAGCTTTTGTTCTTCTTGAACCTC
Right flanking sequence: Indices 660689 -- 661188
ACTGGGATTAAGTTACAGTTAGTATTCGATAGATAATTGAATCTCATCATTCCTCGCTCGGGGTT
TAGCGATCCTTGACGTGACTAATCTTATCAGCTACCCGAATCTCGCACTCTTGAATCTCCTTTCT
AGCTGTTCAAGGGTTACTCAACCATCAACTTGAGCAGGAATAGAACCTGATCCTCTTCGATACCA
ACCTGTCCCCCTACCTCGTGAGGTCAGAACAAGAGCATCAATACCTTTCATTCCTTAGAAAGCAA
ATGGGCTACCTTCCTTATTCGTCCTTGAGCTTTGACCTTCCCTAGCTCGCTGTTGATAAAAGGGT
TCCGCTAAAACTATAAAACGGAATCAGAGGGCATTTCAATATGCCCCAAATCCGTGTGTTAAATT
CTTTTTCTTTCAACCCCGGGAAAATCAATAAAATAAGAAATCCCGAGAGCATGACTCATTGATGT
CTCGGGCCCCCCCGGAGGGAGGCCTTCTTCGCCTTCCACCCAAGA
Found at i:734284 original size:16 final size:17
Alignment explanation
Indices: 734263--734294 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
734253 ATTAAGTAAA
734263 TATACC-ATATTTACAC
1 TATACCTATATTTACAC
734279 TATACCTATATTTACA
1 TATACCTATATTTACA
734295 ACAGCTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TATACCTATATTTACAC
Left flanking sequence: Indices 733763 -- 734262
TCATTCGTCATCTTCCTTCAACCAAGGCTTATAAGGGTTTCCGAGTGGGGGCTAGCATAGGCTAG
TCAAAGAGACTTACTTAGCCCACATAGGCTCTGCTATGAAAGCAGACTTTGCCGATTTCATAACT
TGGATAAAAGATCTCTTTCAGACCTCTCTTTTTCCAAGGGATGCATGCACATTTATCATTCTTCT
ACAATCTCAGTCTTCAGCCTATTACGGGGATTTCTCATAGCAAGCACTTTGATCCCTTTTTTCCT
GTTCGCCTTACTAGTTCATTATGACTTTCGATTCATTACTTCTATTCTCTAAATTAGGTTCACCG
ATAGGAGAACAAGCTTTAGCGCTGACTAGTACTAAGAGAGCACGATAGCTACTGTTGAATTGAAT
GGGAAAAGTTCATCTATTTTAGAGTTAGGAAAAGTACATATATATACACATAGGCTATTGACCTA
GGAATCCTAACGCTACCATAACTCTAACTCCTCTAATTAAGTAAA
Right flanking sequence: Indices 734295 -- 734794
ACAGCTACTAACCTGGCAAAACCACTATCACCCTCGAGTTGAGGAATGATCTAATTATGGTTTAT
TAGCTTTCCCACTGTTGACTTGAAATTTGACTCTATAAATTCATTCCTTTTCACTGGGATGGGAA
GAACTCCTGGCTTCAAAGCCAAAACTTAAAGTCTTGTTTGTGAAAGCACATCCCCAAGCCCGATT
TCGCGATAGACCTAGGGGCTTTCCGAAGGTGCTTCCCGTGCAGCTAAACCTTTAAGCTCTAGGTA
AGCGGATGGATTGGCCGTTGATGGCGGAATTGATGTTATACCTATTTTCACGGGATGTTATAAGC
GTATAATCACCTCGTCTGACTCTGAGCCCATAGGTGAATCAGAGGCTCGTTAAGACCTCATTTTC
TATTACTTCTCAAGTTGAGATAAAGATTCCCCAGAAAAACCGATAAACGACGGATCCGATCTTGT
CGACGAAATGTAAAATTCGCTTTGTCTCGCTTCTTCGTCTTCACC
Found at i:773701 original size:17 final size:17
Alignment explanation
Indices: 773679--773712 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
773669 CTGAGCCTTT
773679 CAGAAGGTCAAAATAGA
1 CAGAAGGTCAAAATAGA
773696 CAGAAGGTCAAAATAGA
1 CAGAAGGTCAAAATAGA
773713 AAAAAGACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.24, T:0.12
Consensus pattern (17 bp):
CAGAAGGTCAAAATAGA
Left flanking sequence: Indices 773179 -- 773678
GCAACCGGAAAAGCTTAAGTGAAGCCCGTTAAGTGATGCCCGAGCGCGTATTGTATTGAATCGGG
TATGAGGGTCTCAACTCCAGTAGTTCTATCTATCTATTTTGAATCTATTTTGGAGTTAAGTGAAT
ACTCTTTTTCAAGCTATCTCTTTTTCAATCCCGGGTTACTGGAATGCGCTGTTTATTAGTTCTTT
ACTGGACTAACTGGGGTATTATCTAAAGCTGTTGTTGGTGTTGAGGTTTCCTAACTACACTCAAT
CAAAACAATAAGCGCTAAAGCGGGAAGGTATAATTCCGGAGAGGAGCTCTATCTCTCGCCGGGAG
GAAGGAACTGATATTCAGCCTTTGGCCGTTGTCAAACAATCCTTGGATAGACGGTTTCACGTAGG
TACATCTTGATTTCGTCTAGAGCGAATATGCCGCTGATGCATAAAGCTGTGTGGAACCTGCTGAA
TCATATAGAGTTTGTAGCTAGGCGCACACAAATACCTGAGCCTTT
Right flanking sequence: Indices 773713 -- 774212
AAAAAGACGAGCTGCTAACAAAGTCTTCATCCTCTGTTGTCTTGAATGGAACAAGCCTCTCTGCT
TTCGAAAGCGGACTCTCGTATACAATAGAAGGGCTTGCTTTGGACTGAGATAGCTCTCCCTTGTT
GCGGCTGGTCGCCTTAGTTCAGTCAAATGACTTTTGAGAGGCTCTGAAAAGACCTGACATCTATA
CAGCCGCACTTCCAACAAGGATCTTCTGCTCGTAGACCACCCTACTGTCCGCACTTCGACTTCTC
CTCTATACCCTTCCCCAAAGCCTGGTCCGTCCATTCCACCCAATTAAGGTTGTTCCGATTGACTT
AGTGCTTGTCTATTTTGCACTAATTTCTCCTCCTTCTGAGAGCACTGACAGGGCTAGTAACAAAA
GTCAGAAGAAGCGCTAATGTAGTGAAGAAGAGCTTAGGACGAGAGCCATGTCCCAGTCTAGCAAC
GAATCTCAAGAACTCTGACGAGACCATTTATGTGTCGCTAACTGG
Found at i:785887 original size:21 final size:21
Alignment explanation
Indices: 785861--785902 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
785851 GGAATAAGAG
785861 GATTAAATCAATTTTAATTAA
1 GATTAAATCAATTTTAATTAA
785882 GATTAAATCAATTTTAATTAA
1 GATTAAATCAATTTTAATTAA
785903 ATTGTGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (21 bp):
GATTAAATCAATTTTAATTAA
Left flanking sequence: Indices 785361 -- 785860
TGCTTTTTAAATAGGATTTTCCCCGCTTAATGGATAAGCATTTGCTACCAATGGGGAATTCTTTC
TCATCTTAAATTCCAAGATTGGATTTGCGAAAATGGAAACCATAAATCTCATACACAATAGAAGG
ATATGGGAGATCTATCTTTTAGATAGTGAACGGGGGAACCCTAGTCTATTCACTGGTACTGATGG
TTGATACTGATAAAATTCTTTCTTTTTTATCAGCCCATGATCTGAACAAGTCGCACATACACCCT
AGTACATGTTCCTCGGCGCTGAGGACATCCCCGAAGAGCAGGGGATTTCGTGACATTTCAAATTG
GCTTTCTTGCATTTATAATAAGTTGTTTAATAGTTGGCATGCTGAATCATATACATAATAGACTG
GTTAAGATCGATCCTAACCAGATGATTATGAATTACTTCTTTTTCTATTTATTAATAGATTAATA
AAATATTAACCCCTTACCTTAAGTTAAGAAGGAAAGGAATAAGAG
Right flanking sequence: Indices 785903 -- 786402
ATTGTGGATTTGTGTTAAATCGTTGCCATTGCTATTTCTTATTTAACCGCTACAAGATCAACAAT
TCCATGAGCTTGGGCTTCTGTTGCTGACATAAAAACATCCCTTTCCATGTCTTCGGCATTAAGCT
GGTAGAAAGCTATCCCTTCCTCTTATCCTTCTTACCAATGGCTTTCACACCCGACTCATCAAGAA
GAGTCTTACCCGCGTGCCCACTAACCGGAGCATCAACCACTATTTTCGATACATTCTCCTCACCC
ACCTCCGTACTCAATGATGGAAAAGGATTATTACCCCTCTTCTCATTCAGAGAACTTCCTTGCCG
GCTACCCTATCGATAGATAAACTGGTATGAGAATTCTGCTCCTTAGTTCTCGAAATAGCTCTCAC
TCCTTTCTCTGCATTAACTGTGCTCTGCCCAGCACTAGGCCCTATGGAAAATCCATCTATTCCCA
CTCTACTTATGTAAACCCTAAAATAAAACCCAACAATAACCGATG
Found at i:788914 original size:14 final size:14
Alignment explanation
Indices: 788897--788927 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
788887 GATGGATATA
788897 TATCGTATAATTCT
1 TATCGTATAATTCT
788911 TATCGTATAATTCT
1 TATCGTATAATTCT
788925 TAT
1 TAT
788928 ATATTGTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (14 bp):
TATCGTATAATTCT
Left flanking sequence: Indices 788397 -- 788896
GGACAAGTGAACGATTTCTTTCTAATTTCATTTATGAGCTACAATTTCAAAGCTATGATAATGAG
AAATCCAGGTAAAACTCCAAGTTTGAAACTTTGAATGACCCCTTAGAGCGTGCTACCTATTTTCC
CGGTAAAACTAGACGTTTTCCAACTCGATATATTGGTTGTGGGTGTTCTGAGAGTGACGGGTATA
CCAAGTCTAAACTCGCTAGCTCTAAAAGGTGAGCTCTCTCTCGTCAGTTAGTTAGCAGGGTTCGC
TATCGCTCTGCCATTTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACCCGCTGCTCTAGCTAAT
TGTCCACCCCTTCCAAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGA
AGTAGATTCTTCTTTTTGATCAATCAAAACCCCTTCCCAAACTGTACAAGCTTCTTCCAAAGCAT
ACGGCTTTCTGGATGTAGATGATGATATCTATACAGATGGATATA
Right flanking sequence: Indices 788928 -- 789427
ATATTGTACAATGAAGTACCACATGAGTGGATATATAGGAATCCAAATCTGCCGAACCACTCATG
TTATGATCTTCTACATCCTAGGTCTTCCCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATT
CAGACCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTATGGGTAACGTAGGAGACAT
CTCTATTTTTCCCCGGGGGAATCTTTAGAATTACCACTGCTTAGCTTTCAATTCGCCTCTGACCA
TCAAATGAAATGTGAATAACCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTCTGGTTCTGTCGG
TGCTTGAAACAATTTTGTCTTCTCCATATTACTATATCTCTAAAGTCAATAATTTTATATGAGGA
ACTACTGAACTCAATCACTTGCTGCCGTTACTCTTCAGTTTTCTGTTGAAGTCTATCCTGTAGAG
GTACTCAAATTGGATCAGTGATCGATTTTTAGGTTTCGTCGTAAA
Found at i:822965 original size:18 final size:18
Alignment explanation
Indices: 822944--822980 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
822934 CAAAATCGAT
*
822944 ATCATCATCATCAGTAAG
1 ATCATCATCATCAATAAG
822962 ATCATCATCATCAATAAG
1 ATCATCATCATCAATAAG
822980 A
1 A
822981 AAATGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (18 bp):
ATCATCATCATCAATAAG
Left flanking sequence: Indices 822444 -- 822943
TGGAACCCACGGTTATGGACCCGAATCCATTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCC
CTAGTATATGAAAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAAT
ACATGTAACTTAATTTATTCGGGGCTATTAGAGTGGGATCCACTTTTTTGGGAATATGAGTCGAA
GCAATAACAAGAATATTTCTAGTGGAACATCTTTCACAATCCTTGGAGAGATAGTTCACTAATAG
ACCGAGGGAAAAGTACTTCGCCTCTTTCATATCCAGATCATGAATGTTTGGAATCCATATTATGC
AAGGAGACATTGCTTTTGCTAGTTCGAATTGAATGGTGACATAAAGTCGGTCTACTTCCAACACC
ATATCCCTAGTTAACGGATCCATCATAGTTAGAAGCTCCTGCTCCGTATCAAGGTCACGATCGAT
ATCGTCACTATCATAATAAACATCGTCACTCTCATCAAAATCGAT
Right flanking sequence: Indices 822981 -- 823480
AAATGTTTAAGGCTGCTATCCATGAACTTGTTCACAAATACTGTAATGAAAGGAACATAGGAGTT
TGTCGCTAGGTATTTGACCAAATAGGATCGTCCGGTTCCTATAGAACCTATCACTAAAATACCCC
TAGAGGGAGATAGGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGACGGAAAACGATTAGCCCCA
CACGAAGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCGCCTTTCTGCTAAACA
GGATGTATTGAACTCATAATTCATTAGATACTTGTTATGAATGTCAACTAAGTATCGTAAGTAAA
TTGGTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGATCACTATGAGTC
AGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGGTGGAGAACTGAACCAA
GAAGTCTCTTTCTTTATCATCAACCCAATCACTATTGTTCGCAAC
Found at i:823792 original size:110 final size:109
Alignment explanation
Indices: 823599--823817 Score: 429
Period size: 110 Copynumber: 2.0 Consensus size: 109
823589 AAAAATGATT
823599 CCCCAAATGGGATTCTGCAAAGGTTTAGCGCCTTAGCTAGTATAGCTAGACCGGCATAGCGACAG
1 CCCCAAATGGGATTCTGCAAAGGTTTAGCGCCTTAGCTAGTATAGCTAGACCGGCATAGCGACAG
823664 ACTACAAAAAAGAAAAAGGAAATGGCTAACTAGAGACAGAAGAG
66 ACTACAAAAAAGAAAAAGGAAATGGCTAACTAGAGACAGAAGAG
823708 NCCCCAAATGGGATTCTGCAAAGGTTTAGCGCCTTAGCTAGTATAGCTAGACCGGCATAGCGACA
1 -CCCCAAATGGGATTCTGCAAAGGTTTAGCGCCTTAGCTAGTATAGCTAGACCGGCATAGCGACA
823773 GACTACAAAAAAGAAAAAGGAAATGGCTAACTAGAGACAGAAGAG
65 GACTACAAAAAAGAAAAAGGAAATGGCTAACTAGAGACAGAAGAG
823818 AAGGCAGGTT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 109 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.16
Consensus pattern (109 bp):
CCCCAAATGGGATTCTGCAAAGGTTTAGCGCCTTAGCTAGTATAGCTAGACCGGCATAGCGACAG
ACTACAAAAAAGAAAAAGGAAATGGCTAACTAGAGACAGAAGAG
Left flanking sequence: Indices 823099 -- 823598
CTAAAATACCCCTAGAGGGAGATAGGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGACGGAAAA
CGATTAGCCCCACACGAAGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCGCCT
TTCTGCTAAACAGGATGTATTGAACTCATAATTCATTAGATACTTGTTATGAATGTCAACTAAGT
ATCGTAAGTAAATTGGTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGA
TCACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGGTGGA
GAACTGAACCAAGAAGTCTCTTTCTTTATCATCAACCCAATCACTATTGTTCGCAACCCAGGATT
CTATTTTATCATAAATCCAAACACCGCTCACGTTTTTTCTTTTTCTTATCAATGAATAGATCTCT
TTACTTGTATGACTTAGATGTCTCGTATTTCTCGAAAAAATGATT
Right flanking sequence: Indices 823818 -- 824317
AAGGCAGGTTTCTCATATGAAGGCTAGCGAAGCACCTATAAAAAACTATAGCGCGAAGAAAGAAC
TCCAAGCTTCAAGTATGACGACCTTTCCATCTTACCATAAATGGAATTCCTCTCAAAGACTGGGC
AAGACCCGCTTTCGCACCTTTAATCTGGTTGACTTGCTTTTATTCATCTGGGTGAGCTCTCGTTT
CTATTCGTAAAGTTAAGGACTGGTCTTTTCCCATTCCCAAGCCTGAAGAAGCAGGAGAAGCTAAA
TCTGAAGGGGTAATGGGCATTGCACCTGACACGCAACGGTGAGGGCCTAGAGCTTTCCTTGCGGG
ATAAATCCGCTGAGTAAAACCGATTCAAAGGAATGAAATCGAAATAAACAGTAGAAGCGAGAGAA
TGGGCAAAAGGATCTAGCACACGATCGATAGTTAATTGGTACTGCTGCTAAGTATGAAAGTCAAG
TGCTTGGGGAATCGATAGTAGATCTTTCCCCTTTTTACTGAAGAT
Found at i:833461 original size:18 final size:18
Alignment explanation
Indices: 833438--833473 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
833428 ACTATACAAT
833438 ACATTAGTAGAAGTAAGC
1 ACATTAGTAGAAGTAAGC
833456 ACATTAGTAGAAGTAAGC
1 ACATTAGTAGAAGTAAGC
833474 GGCTGAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (18 bp):
ACATTAGTAGAAGTAAGC
Left flanking sequence: Indices 832938 -- 833437
TGGTATGGTATTGTCAGATTCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTG
TTTATGGAATTATTATAGCAGGTCGGTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATA
CTAGGACCAATAGGTCAAAAATGGGTTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTG
TGGGCTTACAGGGCTAGGGCTCAAAAACCTTTTCTTTCATTCATCAATAGGGCCCTGGTCGGTCA
CTTTCCGGGTCGGGATCGATAAGTAGAAGTCATAAAAAAGAAATCTTTCTCTTCGCACCTCAGAT
CAAGAGCTTGTCAAGCTGGCCTATATATAATATAAATAAAAAGATTCGTTGTCTTTTTTTTAACC
GGCTGTTCTTCTTTGTCAACGCTACTAAGGACCTATGGGTTCGCCTACTTGACTTATGAAAGATA
ATGAGAATGGGTTATTCAAAAAGGATAAAGGCGCTACTATACAAT
Right flanking sequence: Indices 833474 -- 833973
GGCTGAGTTAGTCTAGCCCACTAATAGTAGGGTATAGTATAGTAGGCGAGCGAGTTAGCGAAGAC
GCTTAGGCTAATAGATAAGAGAGCGTCGGTGCGTAGCCTTCATTCTACTACGCTACGCAAAGGTT
ACGAAGTCACTTAGCTCGACGTTAGGAAAGTCAAGGGGAAAGGCCATACCTACATAGAAGAACCG
CTGTTCGCTGACTTTTTACTTTCGCTTCCCTACTGAAAAGGGGCAAAACCGCTTCGCACCACTGA
TAGACTACTTAAGATTCAATTCAAAAAGGCCCTACTTAGTTTCGAAAGCCTTTGTCATTGTCAGT
CAACTAAGTAGGTCGTTCCTCCCCCTGCGAATCCGTAAATCTGAGGAGCATGCCGCAACAAAAGG
ATGGTCCCCTATGCATTTCATTCTTTCTGAAAAGGAAAAAAAAGAAGTACTCCCCATCATGGTGA
ACCTCTCCTTGTGATCGGGATGAGGTAAATGCCTCCCAGCCGGGG
Found at i:850849 original size:24 final size:24
Alignment explanation
Indices: 850821--850895 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 24
850811 ACAAAAAAGA
850821 TTTGTCTAAGTCACTTCCTTTCTT
1 TTTGTCTAAGTCACTTCCTTTCTT
* *
850845 TTTGTCCAAGTTACTT-C--TCTT
1 TTTGTCTAAGTCACTTCCTTTCTT
* *
850866 TTTGTCTAAATCACTTCCTTTTTT
1 TTTGTCTAAGTCACTTCCTTTCTT
850890 CTTTGT
1 -TTTGT
850896 GAGTTTCGGG
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 17 0.41
22 1 0.02
23 1 0.02
24 17 0.41
25 5 0.12
ACGTcount: A:0.13, C:0.23, G:0.08, T:0.56
Consensus pattern (24 bp):
TTTGTCTAAGTCACTTCCTTTCTT
Left flanking sequence: Indices 850321 -- 850820
GATTTGGAAGATCTAAAACCAAAAAGAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAA
TCAAGATAGATTGATCCGAAATCTGATTCAAATCCAATATAGCACCTATGGGTACATAAGAAATG
TATTGAATCGATTCTTTTTAATGAATCGATCCGATCGCAACTTCAAATATGGGGATCAAATAGGA
AATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATCGAAATTGAA
AAAGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTGATTTCTCGGACCGAGAGATCCATGAATC
GGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAGCATTTTTAA
CATTTTGTTTCTGAGCATAAGAATCTTTTTAATCTTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 850896 -- 851395
GAGTTTCGGGAATATCCCCATTCATGGGTCTGAGATCCACGTCTATGAATTGAAAGGTCCGAATA
ACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCTT
TCTTATTGGATGATCATAATACTTCTCAAAAACCGAAATTCTTGATCAATGGAGGAACAATATCA
CCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAAGAATCGCAG
GAAATCTTTTGATAACGCGGATTCCTATTTCTCAATGATATCCCGCGATCAAGACAATTGGCTGA
ATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCTTCGATTCTTGAA
TAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTCCCTTTTTATGTGGAAAAGGCCCGTA
TCAATAATTATGATTTTACGTATGGACAATTCCTCAATATCTTGT
Found at i:917863 original size:17 final size:17
Alignment explanation
Indices: 917841--917875 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
917831 TATTGTCTTT
917841 ATTACCGGACTAGAGAA
1 ATTACCGGACTAGAGAA
917858 ATTACCGGACTAGAGAA
1 ATTACCGGACTAGAGAA
917875 A
1 A
917876 GGAAGGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (17 bp):
ATTACCGGACTAGAGAA
Left flanking sequence: Indices 917341 -- 917840
GGACTCTTCGCTGCATTGCGTCTATTTCGTCATGCCGGGAGAAATAAGAAAGACCTCGTGTAAGA
AGACCTATAATGATCTCCATTGGACCCCCGTTCGATATCGCTTGATACAATGTCCTCAGCCTTGA
TTTGGCGCATATTGATGTACTCTGAGACCCTTTTCTAGTTTTAGCATAACCGAATATGTTTCATA
TCCGAGAATTCATCTTCAACTCGAGGGACATCACGAATTAAGAGCTTCCGACTAGACGAGTTGGA
TAAGTTCTTTCCCCAGCACCGGAAGTGAGGATTTCCCGAATTGCATATAATACAGGTAGGCCTTT
CGATTGAGTAGCGGGTGCGAGACTCGGGTTCTCTTCCCCAAGTTGAGTTGATAGGCGCGTACTGA
ATCAACAGGCAGGCAAGGTAGGTAGCTCGGAATGGTAGGTCATCGGTACCGCGGTCATTGCAGTT
GGTCTTATAGGCTACTTGCAACTTGTTCTCCATTCTATTGTCTTT
Right flanking sequence: Indices 917876 -- 918375
GGAAGGAAAGGAAGGAGAGGCGCGCTAGTCCTTTACTCGATCATTAGCAGGGTTCGCTATCGCTC
ATGCCAGTTCCCCCTTCGAAAGCTCATTTGCTTTTCTTTAGTATATATCCAAAGTAGATAGACTT
AAGCGGGAATTTCCCCAACGAGTATCCTTTTTCTAGCGCGAAGTCTTTTTTTTGAGGTAAAAACA
GGTCTTTCATTACGATAAAGAAATAGAACAATCAGTTTGTAGAGGATCATGAAGCCAAGAAGGCA
TGTCCTCTATCCATACAAGTTCTGAATCTAATGATAAACCATAACGAGCAAGCTCATGAGCAACA
GAATTTCCATGTCTTCCTACATATTGAAAAAGAACATCTATTAAATAAATTCTAATACTTGGCAT
CCTGCACCGATTGGAGAAAAATCAGCATCTGAGCAGTTGATTTTCTGAATAATACTAACAGCATC
ACCTTCAAAGATAACATCATGAAAACCCATATCCTTTGCCCAGGA
Found at i:929571 original size:13 final size:13
Alignment explanation
Indices: 929553--929578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
929543 AGTTGTATCT
929553 CTCAATCGAGTTA
1 CTCAATCGAGTTA
929566 CTCAATCGAGTTA
1 CTCAATCGAGTTA
929579 AGGGGATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CTCAATCGAGTTA
Left flanking sequence: Indices 929053 -- 929552
TCTTTTTTGTTAGCTTGTCCCTATTCCATGCTTTAAAAGCGCCTTTAGGTGAACCAGAATCCTAT
CGACCGGAAGAGAACACAGTACTTACTAAAACCCCAAGGCAAAAGGATTCATCCGCGGGTTCATA
AAGAAATACGCATGGCGGGTACCTATACAAAGGCGCTTACTTAAGTAAGTGATTTAATAGAGACC
GGTAAGTCCCGGTAGTGCAGATCCTAATTGCGTAATTGAATCAAAGTAGGCAAAGCGAAGGGAAA
GAGAATAGAAAAACCCAACCGAAGAGATAACGCCAAGGTTTGTTTCCGTTTAACGCGCAGAAAAG
GAGTTATGCCCACTTCTTCATCCAAGTTCAGTGAAGAGATAGTACCTTAAACCGGCATTAAGCGA
ATGCGGTTCAGTTTGAGAATGAGATTTAATTAAGGAAATCGACTTGAGGCCTATTTTCACGGGAT
TTCTTAGAAGGAAGGGATAGGGCATTAACATTCATAGTTGTATCT
Right flanking sequence: Indices 929579 -- 930078
AGGGGATCTTGAGTAAGGTAAACAAAAGGGCTACGGACTGGAATAGGCTTGAAACCATAGACCGT
TAAATGAAGGATTGTGGAAAACGTCTAGTTAACCCGTCAAAATAGGTATCTACTCATATTCCGCT
AATTCATCTTATTTAATTTCAGTTGAAGACAAGCGAGTGTCATCCCGGCAAAGAAAGCATCCAAG
CCACACCACCCGAGCGAGAGAACTGCTAGCTCATAGGCTCAAAGGAAGGGATGGATCTAGGATAG
ACAAGAAGGCTAGCAACAGGAGAACCTATTACATGATATTCTTCTTTGAATGCCCGGTCCCAAGG
CGAAGAACGACTTAAAGCAAAGGTCTTGAGTTTGACTGCAACTCTAGCCATTCTTTTTAATGGAA
TGTCATTCTCAGGTGCTTAAAAACTGGATTTGCTTAGGTTGTTTATTAAGGTGGTGGGTCTTCTG
AGAGTTCAGAGGTTTCTTTCAGCAGATGAATTATCGTAAGTAGTA
Found at i:967040 original size:14 final size:14
Alignment explanation
Indices: 967021--967048 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
967011 ATAATAATGC
967021 CTTGAACTCCAATT
1 CTTGAACTCCAATT
967035 CTTGAACTCCAATT
1 CTTGAACTCCAATT
967049 ATAGTACGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (14 bp):
CTTGAACTCCAATT
Left flanking sequence: Indices 966521 -- 967020
CTATCTAACGAAGGAATGCATCCGATCGGGAGACAGACCCTTCAGCGGAATCTATTACCTATCTT
ATTCATTCAGCTTCTGCGCCTGGTGAAGCGAAAAAGCCTAGTCTATTTTTCTATTTCTCTTTGGA
GAAAGTATCCGATTTAGCATTGAGTGGCAAAACCCCTCGGGCGATCTTCTTATATTATAGGGACT
TTATGCCCTGTAAATGAAAGAATATTTGACTTCTCGGCAAAGACCTCTTCCATCCTCCTCTGATA
GGTTGAGTCTTCCCTTTCTGCTTTCTGGGTTTTACTCTTATCTAAACCGATCAGCCTCTACAAAA
AAAGAGTCGATAATAAGGCCTTCACCTCCAGGAATGAAAAAGCGGCTATCCCCCGCCCTTATCCC
TATCCCTGCAGCGAAAAGCCGAGTTCTCTATTTATCTTCGGAGACATCATCCGACTTAGCGGCAA
ACCTCTAGATCAAACTCTTTAAAATGAAAAGAAGGATAATAATGC
Right flanking sequence: Indices 967049 -- 967548
ATAGTACGTGGTATATATATTCTAGAACACTCTCAACTACTCACTATTTGAAGTACTATCTCTGA
ACCCAAGAGCTATCTACAGATAGAGTTCTATCGGCACCCTGAAAGCCAATACATGGAAGACTCAC
ATCCGATTCCGTGGCAGAAGTTGTCGACTTCACAGAGAGAAGAAGTACCAGTACTCCCCACTTGG
AAAGACAACGGATCCTCAACAATTCTCACCAAGTCATATAAAAATCGTAACACACCGTATTGAAA
GATCATTATATAGTTGCTTTCGAGAACAGTGTATACCCAAGGGTATGAGTAAAGACTCAAAGTCC
AGACTGTAATCGAACTGCACAGAACCTACACCGGCACACTCGCCGGAAAACCCGAAATTGCCATC
GAAAGAAGCACGAACGGGCACAGAAGCAATAGGCACAAGAAAAAGAAAGTACTCGCGAGCGTAGT
TGTAAGAGCGTAAAGCAACTCGAAGAAAGGGGGAGGAAGATCTGT
Found at i:972907 original size:20 final size:20
Alignment explanation
Indices: 972882--972921 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
972872 CGATTCTCGT
972882 CATCCATTAGCTTATTGCCA
1 CATCCATTAGCTTATTGCCA
972902 CATCCATTAGCTTATTGCCA
1 CATCCATTAGCTTATTGCCA
972922 GCAGCGGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.35
Consensus pattern (20 bp):
CATCCATTAGCTTATTGCCA
Left flanking sequence: Indices 972382 -- 972881
GCTCCTACTGATATACCAGAAAAGATGTCATCATAACCTATCACTTCCAGATATGCTATTAGATA
GGCCCAGAGAGAGATCTATGCGCTCAGATCTGAGTACTGCAATTGGTTCGGCTGAATGGATAGAA
TTTTTTGAGGCTGGTACGACATCGAAAGCTACTCCACCTCGATTAAGAAAACTAAAACTCCTAAT
GTCTGAAGGAGAACTTCCAATGGTTGGAAAAGACTCAACTCTAATAAGGAACTCGACTCTCGCTT
TCTACCTTCGAAATAGTCGTACCCTTTGGCTCGGAGTTACTACTTATACTTTTTCTTAGTATAGT
ACCACTTTCTGTATCAGGGATAGCTACTTAACTTATTATGAATAAAATATGCAAGGATGTAAGTT
GCTTTTCCGCCGGTACACTGATGTTGGTAGTAATCTTCTTCCTGTAGTAAGGAGCGAAGCGGTAG
ACTATGGGCAAGAAAGCCTAGCATAATTAGAGTGACGATTCTCGT
Right flanking sequence: Indices 972922 -- 973421
GCAGCGGGAATTTCTCTTATAGCTCATCTTCTGACTGTCCTTTTCAACCGGCCAACACAGGAAGG
GAAGATTAGGAACAGCTGGCCATGAATAGTAAGTGGTATGTAATCCCTCTATGTCTCCCCTTTTC
CCCTAAGAAAGAGGGCCTCTCCCTCAGGTCGAGTGGCTTTACGCAGCTTTTCTCCGCTTCCTTCT
CTTTCAGTCTATCGGGAAAGTCATCCTGTTCATTGAACACCTCTTATCCGGGTGGTCGAGCTACT
ATGCATGCTTCTCTGTTCTTCGAGAGTCTTCTATCATTTTCGGACACCTGCCTGCACTGAAAGGG
CTAGTGACTGAGTGAGATTCTGACAACGCGGAGATAGACTATCGGCTTACCGCTTACTCTATATA
GGCCTGCCCCCTTTCTCCTTTGGCTCTCCCCTTCTCGTCTCTTAAGAATAGGTTTGATCCTCTAT
AAGTCCCGGTCCCTGCTTCGCTTTCAACCTTCGCCCATTCATTGC
Found at i:989477 original size:12 final size:13
Alignment explanation
Indices: 989456--989484 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
989446 TTGTTAGGTA
989456 GAAGGTTAGGAAG
1 GAAGGTTAGGAAG
989469 GAAGG-TAGGAAG
1 GAAGGTTAGGAAG
989481 GAAG
1 GAAG
989485 AAAGGGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.48, T:0.10
Consensus pattern (13 bp):
GAAGGTTAGGAAG
Left flanking sequence: Indices 988956 -- 989455
GAAACGTAAGAAGAAGGTATGACGAGATCGATTCCTAAGACAAAGGGAGATCTATTTCATAAAGA
GATTAATTGATTGCCTTAGCCGCCCGCTCACTCCAATGCCTATTCCCGTTCGTGTGCCCCTAGCT
ACATTCGGGCACCCTTCACTTCTCAAGACAGGCTCTCCGCCCTTCATTACGGCAGTAAGGGTCTC
CCCTCCTTTTTGGTGTCGGATGAGACCCTATCGGCCTTCACTTGGGCTGGTGCGAGTGGAGCACA
GAACTATAGCTCTCCTTTAGAGCTTGTTATAGGGGACTTTCTCCACTTCTTCTGTCTAATCTAAA
AACAACCAACATCCTATCAGAAATTCATATCTATCATCCCCTATCAAGAACCTATCATCAATCAG
TATCAGTACAGGTTTAAGAATAGGTAAGGTATTGTTGCTTTAGTTCGGCTAGAGAGCTAATTAAA
GGTTAAGCTTCCTATTGCCTTACTTGTTGGCTTGCTTGTTAGGTA
Right flanking sequence: Indices 989485 -- 989984
AAAGGGATTAGCTCGGTAGGAAGGCTTAGCTGCGGTGCCCCTCTTGTTCTACTAGTTAGGCAAAG
TGGAAGAGGTAGGCTCTAACTGCCTTTAGAGATAGTAGGAGTAGAAAATAGGCATTATTTGTAAC
ATTTCCGAACCAACTGAAGGGAATAGGCAATAGTAAGGTTTCTACAATACAGAAGAAGTGGAAGA
ATGCTATTCCATAGCGATATGCCGAAGGTAACCAAATAGTCTGATTCCATTCTCTATCAGCGCAG
GAGAGGTAAAGGGGCTGTCCCGACACTAAACGGAGGGCAAAGACCCAACCTCAACTAAGCGGAGA
GAGTCTGTCTTTACTAAGAGAGGGTTCCAGGATGTACTTAATGGAACCCGAACGCTCCTACTTCC
TTTCCGTGCTGCTTGACCTACTAAACTCAGCGGTTAGAGTATCGCTTTCATACGGCGAGAGTCAT
TGGTTCAAATCCAATAGTAGGAAACTACCGGTCCTCCACATTCCC
Found at i:1015379 original size:24 final size:23
Alignment explanation
Indices: 1015348--1015392 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
1015338 GATTCTCCTA
*
1015348 TCTATCTTTCCTTTCCTATCTCT
1 TCTATCTTTCCTTCCCTATCTCT
1015371 TCTAGTCTTTCCTTCCCTATCT
1 TCTA-TCTTTCCTTCCCTATCT
1015393 AGAAAGTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.09, C:0.36, G:0.02, T:0.53
Consensus pattern (23 bp):
TCTATCTTTCCTTCCCTATCTCT
Left flanking sequence: Indices 1014848 -- 1015347
AATATTAAACTTTGTTACTCATATAGCGAGAAAAGTCTTCATTTTTAACGATTTTTAATTCAATT
TCAGCCCAGAAACTGACTCGAGACCAAAAATACGGTGTTTTTAAAAAGTTATCAACTTGGAATTC
TTTTTAGGAAAGGAAATTACTTTTATGCCATTTTTACGGTGTTTCATCAATTGAGTCGATTGAGA
ATTCTATTTACTACTTACGATATTTCTCAATGCAGATAATTGAATCCCGAGATTCCTATGAAAAG
TAATTCAATGCTGAGAAAATCAATTCATCTATAGGAATAAGAAACTCATATCTACTCAACGGAGA
TTCCCTTCTTTGGCTTCAACCAATCATGATGCTCTATCTTCCGAGCCCCTTTTTTGTATGCCGAT
GGGTTAGAAAGCTTGTTTTCACGGAATTACCATTGATGGTTATTTTCTGGTTTTTGATGATGGAA
GTTCCTATGCTCGTCAGCTAGTCTATTTTTCTACAGATTCTCCTA
Right flanking sequence: Indices 1015393 -- 1015892
AGAAAGTGAGAATTCTCTCAAGCGACAATCAATGAGACCTATACTCGTTCAGCCAGCAAGAGCAA
GAGAGAGAGTATCAGGTAGGGAGTGGGTCATTGGCTATGCGATCGTATGGGGAAAAGTAATATGA
TGTAGCTTTCACTGAAAGGCGAACTGTCTAACGACGAACTTGATTCCCTTAGAATCGAATCGGTT
GTCAAAGGCGGATTATCTTATCTTGACCGGGTGCTTGGAGATGTTTATGTTTTATCGGTCCTATA
TCGATGCTTTATCCTTTCCCCAAGTTGAAGTGGAATTCTTATGATTTATTTGTGTATCGATCTGG
GGAAGAAGGAGTTCAAAAATCCGCAACTATTGAACATCCATCTGATGAGGAAAGGCAGACTTCAA
TAGCTAGCGAGTTTGCTTTTTCACTAGTCCTCAGACTGGCAGGCAGTCCTATTATAACTCTCAGG
GAAAGAATCAGCAGTGATTTCAGCCAAGGCTTTAGGATTTGTTCC
Found at i:1015894 original size:20 final size:20
Alignment explanation
Indices: 1015871--1015910 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1015861 GTGATTTCAG
1015871 CCAAGGCTTTAGGATTTGTT
1 CCAAGGCTTTAGGATTTGTT
1015891 CCAAGGCTTTAGGATTTGTT
1 CCAAGGCTTTAGGATTTGTT
1015911 TTCGTTGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40
Consensus pattern (20 bp):
CCAAGGCTTTAGGATTTGTT
Left flanking sequence: Indices 1015371 -- 1015870
TCTAGTCTTTCCTTCCCTATCTAGAAAGTGAGAATTCTCTCAAGCGACAATCAATGAGACCTATA
CTCGTTCAGCCAGCAAGAGCAAGAGAGAGAGTATCAGGTAGGGAGTGGGTCATTGGCTATGCGAT
CGTATGGGGAAAAGTAATATGATGTAGCTTTCACTGAAAGGCGAACTGTCTAACGACGAACTTGA
TTCCCTTAGAATCGAATCGGTTGTCAAAGGCGGATTATCTTATCTTGACCGGGTGCTTGGAGATG
TTTATGTTTTATCGGTCCTATATCGATGCTTTATCCTTTCCCCAAGTTGAAGTGGAATTCTTATG
ATTTATTTGTGTATCGATCTGGGGAAGAAGGAGTTCAAAAATCCGCAACTATTGAACATCCATCT
GATGAGGAAAGGCAGACTTCAATAGCTAGCGAGTTTGCTTTTTCACTAGTCCTCAGACTGGCAGG
CAGTCCTATTATAACTCTCAGGGAAAGAATCAGCAGTGATTTCAG
Right flanking sequence: Indices 1015911 -- 1016410
TTCGTTGACTCCGTTCCCCTACTCTGCACCTTACGGACCCTATCGTACTTTTCCTTGTTCGCATT
ACACCTTCATCGAGGATCCTTCGGGACTCCCGGTCAGACAATGAGACGGGCAATCCCAACACAAG
GTATTAGTGCTCTTCACCTAGAGGCATAAATAAATCACCTAATAGATGGTCAGCTTAGCTATGAA
TTTAACATGACATGCTCCGAGGAGTACGATCTTTGGTAAGACCCCTCGACTTAAGTCCTCATATT
CCACATATACTTATGCTCAGCGCTATACTTGGTTTACTAAGTAAAGAAAGCTCAAAGCTTATCAG
CTCGTATCGACACTTCGACTTACTAATCGCTTAACAATTCTTACTGTAAGCCTGTACAGGAGGAT
GACGAGGTGACTTAGACACGCAGCCAACAAGGTTGCAAACAAGCTGAGAACCCGCGAATCGGTAT
TTTCCCTGCTTACGATGAGCCGAGTTAATCAGGCAAGGGGAATCC
Found at i:1033244 original size:22 final size:21
Alignment explanation
Indices: 1033219--1033270 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
1033209 TAAATACTCT
*
1033219 ATACTCTAATACTATAATTTAA
1 ATACTATAA-ACTATAATTTAA
*
1033241 ATACTATAACCTATAATTTAA
1 ATACTATAAACTATAATTTAA
1033262 ATACTATAA
1 ATACTATAA
1033271 CTGTCTCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.38
Consensus pattern (21 bp):
ATACTATAAACTATAATTTAA
Left flanking sequence: Indices 1032719 -- 1033218
TAATGCAGTCTTACTCCAGAAAACGGCATGGCGATTCCTCACCGAGCCGGATAGTCGTAGGGTCA
GAACTTTGAAAGAAAAATACAAGATTGTTGGTGATGTGCCATTTCTAAGGCAACGGACTTGCAAA
CAACAACTAAACTGGTACTGGTAATGGTCGATACGGTCCTTTCCTATTCCTTCTATGTCGTAGGG
TTAAAACCAAAAAAGATTTGTTGCTTTCCCGATGTTTCCTTACGTTATCGATAAAACCTTCTCGT
AAAAGGATTTTAACAATGTTTTCAGTGATGTTAGTAGATGCTATTCGAACCGTTCCTTTTCTATT
TATGTCAGCATTTCGTATAGAGGTTATTATGTCAGCAATAGTGTCTTTACCCATGGTAAACTAAA
ATTATTGTTGCTCGCGAATTTTGATATAATCAACATGTTCTTTTTTTTACTTAGTAAAGAAAGGT
ATATACGTGAAACACAATCTACTAATTAATCTATGTAAATACTCT
Right flanking sequence: Indices 1033271 -- 1033770
CTGTCTCAATTCCCGGGCGATCGCACCAAAAATCCGAGTTCCTTTTGGATTTCCTTCTTGATCAA
TGACAACTGCAGCATTGTCATCATATCGTATTATCATACCGTTGTCGCGTTTGAGTTCTTTACAA
GTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGTGTATTTGGTACTGCTTCCTT
GATCACAGCAACAATAACGTCACCAATATGAGCATATCGGCGATTACTAGCTCCTATGACTCGAA
TACACATCAATTCTCGGGCCCCGCTATTATCTGCTACAAAAAAATGGGTCTGAGGTTGAATCATT
TTTTTAATCTCTTCTTTCAATGCAACAAAGGACGGAGAAAAAAAAGAAATATTGTTTGTCAAAAA
AAAGGAAACCCGCAATTGTTTTTTTTATTCCCAAGACTTCTTTCCTTTGGTTCTATATTCCTATC
CTGAAATAATGAATTGAGTTTTTATAGGCATTTTTGACGCCGCTA
Found at i:1033255 original size:21 final size:21
Alignment explanation
Indices: 1033230--1033271 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1033220 TACTCTAATA
1033230 CTATAATTTAAATACTATAAC
1 CTATAATTTAAATACTATAAC
1033251 CTATAATTTAAATACTATAAC
1 CTATAATTTAAATACTATAAC
1033272 TGTCTCAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (21 bp):
CTATAATTTAAATACTATAAC
Left flanking sequence: Indices 1032730 -- 1033229
TACTCCAGAAAACGGCATGGCGATTCCTCACCGAGCCGGATAGTCGTAGGGTCAGAACTTTGAAA
GAAAAATACAAGATTGTTGGTGATGTGCCATTTCTAAGGCAACGGACTTGCAAACAACAACTAAA
CTGGTACTGGTAATGGTCGATACGGTCCTTTCCTATTCCTTCTATGTCGTAGGGTTAAAACCAAA
AAAGATTTGTTGCTTTCCCGATGTTTCCTTACGTTATCGATAAAACCTTCTCGTAAAAGGATTTT
AACAATGTTTTCAGTGATGTTAGTAGATGCTATTCGAACCGTTCCTTTTCTATTTATGTCAGCAT
TTCGTATAGAGGTTATTATGTCAGCAATAGTGTCTTTACCCATGGTAAACTAAAATTATTGTTGC
TCGCGAATTTTGATATAATCAACATGTTCTTTTTTTTACTTAGTAAAGAAAGGTATATACGTGAA
ACACAATCTACTAATTAATCTATGTAAATACTCTATACTCTAATA
Right flanking sequence: Indices 1033272 -- 1033771
TGTCTCAATTCCCGGGCGATCGCACCAAAAATCCGAGTTCCTTTTGGATTTCCTTCTTGATCAAT
GACAACTGCAGCATTGTCATCATATCGTATTATCATACCGTTGTCGCGTTTGAGTTCTTTACAAG
TACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGTGTATTTGGTACTGCTTCCTTG
ATCACAGCAACAATAACGTCACCAATATGAGCATATCGGCGATTACTAGCTCCTATGACTCGAAT
ACACATCAATTCTCGGGCCCCGCTATTATCTGCTACAAAAAAATGGGTCTGAGGTTGAATCATTT
TTTTAATCTCTTCTTTCAATGCAACAAAGGACGGAGAAAAAAAAGAAATATTGTTTGTCAAAAAA
AAGGAAACCCGCAATTGTTTTTTTTATTCCCAAGACTTCTTTCCTTTGGTTCTATATTCCTATCC
TGAAATAATGAATTGAGTTTTTATAGGCATTTTTGACGCCGCTAT
Found at i:1051919 original size:23 final size:24
Alignment explanation
Indices: 1051870--1051920 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
1051860 TTCCATATCG
* * **
1051870 AAATATCAGTTGAAAAAATCATAA
1 AAATAGCAATTGAAAAAAGAATAA
1051894 AAATAGCAATTGAAAAAAGAATAA
1 AAATAGCAATTGAAAAAAGAATAA
1051918 AAA
1 AAA
1051921 AAAAATGCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.20
Consensus pattern (24 bp):
AAATAGCAATTGAAAAAAGAATAA
Left flanking sequence: Indices 1051370 -- 1051869
ATGTGGCGAAAAAGACTGAAAACCGAGATATGCGAACATGTTTAAAACTTGTCGTCTACTTTCAG
GAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTCCGAAGATTGAGGAACAAG
AAGAGATATATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAATTACAAAC
TACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAAC
GAGCTTCATATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTC
CATTTTCGTGAAACTATTCCTCAAGCAAGGCAGCTGATAAATCATCGAAGGGTTTGTGTGAATAA
TGAAATGGTAAAAATTAATCATTTGAAACTTTCCCACGGTGATATAATATCTTTTCAAGAAAATA
ACGCGAGAATCCGCGGTGAAGAAATAAGGAGATTTTTCCATATCG
Right flanking sequence: Indices 1051921 -- 1052420
AAAAATGCCGAAAAAAACCGGTAAGAATGTGGAGAAGAATCAGGAGGAAAATCCTACTAAAAAAT
AAGAGGAGACGCCGCTTACTACTAATCCACCTACTAAAAAATAAGAGGGGACGCCGCTTACTACT
AAAATCCCGGTTTTTGAAAAGGTTGCGTTATTTTATGCAAAAAGAAGACTTGTCAAGAACAAAGA
AGTTTGGATCCAAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAAT
TTGTATCGTTTCAAATCCCTATTCTTATCGAAGAGAAGAAACGAGAAAAATTTATATAGACCTAA
AAATTTATATAGAAATTCGACCTATTGCTCCGAATCCCCCCATCTGTTTACTATGACGAGAAGAA
TCAAAAGGATTGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTA
TCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTG
Found at i:1052024 original size:42 final size:42
Alignment explanation
Indices: 1051973--1052052 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
1051963 GGAGGAAAAT
1051973 CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAATCCA
1 CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAATCCA
*
1052015 CCTACTAAAAAATAAGAGGGGACGCCGCTTACTACTAA
1 CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAA
1052053 AATCCCGGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19
Consensus pattern (42 bp):
CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAATCCA
Left flanking sequence: Indices 1051473 -- 1051972
CGCATTCTCCGAAGATTGAGGAACAAGAAGAGATATATTAAGAGAAAGATTTATCCGAGAAAAAA
TCTTAACAGTTACATCCAATTACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCA
TCACAGAGATGCACAGAGGAACAGAACGAGCTTCATATATCCCTTTTCCACTCAATCCAGAAACA
AGATCGGACGTTATTCCGGTTCGTCTCCATTTTCGTGAAACTATTCCTCAAGCAAGGCAGCTGAT
AAATCATCGAAGGGTTTGTGTGAATAATGAAATGGTAAAAATTAATCATTTGAAACTTTCCCACG
GTGATATAATATCTTTTCAAGAAAATAACGCGAGAATCCGCGGTGAAGAAATAAGGAGATTTTTC
CATATCGAAATATCAGTTGAAAAAATCATAAAAATAGCAATTGAAAAAAGAATAAAAAAAAAATG
CCGAAAAAAACCGGTAAGAATGTGGAGAAGAATCAGGAGGAAAAT
Right flanking sequence: Indices 1052053 -- 1052552
AATCCCGGTTTTTGAAAAGGTTGCGTTATTTTATGCAAAAAGAAGACTTGTCAAGAACAAAGAAG
TTTGGATCCAAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTT
GTATCGTTTCAAATCCCTATTCTTATCGAAGAGAAGAAACGAGAAAAATTTATATAGACCTAAAA
ATTTATATAGAAATTCGACCTATTGCTCCGAATCCCCCCATCTGTTTACTATGACGAGAAGAATC
AAAAGGATTGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATC
TTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTC
GGAGCGGAAACGGGCGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCATAGGGACATATCCA
TTTTTCAAAAATAAGAGAAAATAATCTGTTCATCTCTCAAGGGTC
Found at i:1071702 original size:21 final size:21
Alignment explanation
Indices: 1071677--1071716 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1071667 GTTGTAGAGA
1071677 AAAGCAATTG-CGTAGAAGTCT
1 AAAGCAATTGCCG-AGAAGTCT
1071698 AAAGCAATTGCCGAGAAGT
1 AAAGCAATTGCCGAGAAGT
1071717 GTTGAGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (21 bp):
AAAGCAATTGCCGAGAAGTCT
Left flanking sequence: Indices 1071177 -- 1071676
TTCATTGTGATAACCAGTCTGTAATACGCTTGGCAGAAAATCCAGTGTTTCACGCAAGAACCAAG
CATGTTGAGATACATTATCACTTTGTTCGGGAAAAAGTACTGAAAGGAGAAATTGAAGTAAAATA
TGTCAAGACTGAAGACCAAGTTGCAGATGTGTTTACCAAAGAAATTAATGGTTCGAAATTTGAAG
AATTCCGAAGGCGACTTGGAATGATCACAAAGCCAACAAAATGAGAGAGTAGTCGTTGAGGGGGA
GTGTTAAAACTACACCAACTACTCTTTAGATCTTTCCATTTGGTAAATTCAAACTAGAAGTTTGC
TAAATAAGTTTGGTGCATAGCTTAGGTAAAGATGTCATTACCTAAGTTAGGTAAGTTAGGTAAAT
GGCTAAAAATAAATGGTTTGCACCGAGTTGAAATGCCTATATACAAGGGCATGCCAATTGTGGAG
AGGTGTCAAGCAAGTCGAGAACAATTGTGTGGTGAGTTGTAGAGA
Right flanking sequence: Indices 1071717 -- 1072216
GTTGAGCAATCGTGGAGAAGAGCAAAGCAATTGTTGTGAGTTGAGCAATTGTGAGCTAAATATAA
GAGAGTTATTTGTATTTGCTCTTTGCTATAATAAAATTTTTTTGCCTTCTCATTAGCCAAGCCAA
CACAAAGTATGGAGTTTCCAACTGATTGACCAACTAGGTTAGGAGTTGAACCAGTAGCAGGAGTT
GAGCCCGGGGTTACCAACAGGGAATCAACCGAAACTTCAAGATCAGCTGCAGGTATAAAAAGGAT
TCGATTCCAATACAAGCTTGTCAATTCATAGACCTATGTTATGTGCTACAAAACATCCTTCTTTC
CAGGAATTCCCTCTGAAGCTAAGGAATATCTTCTTGAACTGCTTCTTCTTTCCGCATTCACTTCG
AGCTAAAGTAAATGTGCTTCCCACTCCACGCAAACAAATGAGCTACGAGCGGAGTTGGTTTATGA
TTTTAGGTAAGGGTGCTTTCGCTTTCGAGATAGCATGATAGAATC
Found at i:1099757 original size:25 final size:25
Alignment explanation
Indices: 1099729--1099778 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1099719 CATTCTCTTC
1099729 CAATTAGTTGTGTTGCCTATAAATT
1 CAATTAGTTGTGTTGCCTATAAATT
1099754 CAATTAGTTGTGTTGCCTATAAATT
1 CAATTAGTTGTGTTGCCTATAAATT
1099779 GATTACGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (25 bp):
CAATTAGTTGTGTTGCCTATAAATT
Left flanking sequence: Indices 1099229 -- 1099728
GGAATAGAAGGTGATACGGAGAATGATCATAAGTGACCAGCATTCCGATCAGAGTGTGCATGCTC
GGTAACTCTCCTCCTAGCTAATTGTTAAGCGTTAGCGACATAGCAGTGCGTAATAGCTTAAAAAA
GAGCGGCTTACCAATCCAGCTATGTTGCTTTCTAGTGTCAAATTACGGGGTGGTGAAGTAGAATA
CGAAGTTTGAGGTTTTTTTTCTCTCATCTTTCGGACCCTACTAATGATATTATTTATACGCTTGA
CTATTTGAATCTTTTCTCTGAAAACAAGAAATTGCGTTCAGTAGAACGTCAGTTTCCATTGGTGA
GCCTTTCTTGGTTTTCGGGTTGTTCCGACGAAACTCACCATCTCACTTTAGCAGCCTATTAGAAT
GTCATGTCAAACCTGAAAACAAGCCATTCTATCAAAGAGGGCATGAGAGATATGATATCTTCTTC
TATGTCATTTGCTTCTTTCTTCTCGCTTAAGCTTGCATTCTCTTC
Right flanking sequence: Indices 1099779 -- 1100278
GATTACGAAAGTCCTGGTGAATAGAATGTGCCCGTATCCGCATGATTTAGTGGCTCCGCTACAGG
CAAGCTTCATTGCCAAAAGGCAAGCTTCGGATAAGATTTTTGTAGCGCAGGAATTGATCCATACC
ATCCGAAGATCCACTAGTAAGAATGGACTTATGGTAGTCAAAATTGATCTTGAGAAGGCCTATGA
TGAGAAGATCTCCCCGTTCGCCCTTTCCCCACTGTGGTCCGTCTTTATTCCCAGTCTTCCCCATC
CCTTTTTCAAAAGTTCTGGGAGATCTAGTGGCCTTGTTTCCATCTATCTACTTTCTTTTCTTACC
TGGCAACCATCCCATGGACGAAGTCCAACCCCGACCCAACAACAGCGGCGAAAGAAGAGTAGGTA
CAGCTAGCATTCCCAATCCCATATTTACAAAGGATCTTCCTGCTAAAATCGGAACTCTCACCGCC
ATTCCTAATAAAATTTAGATAAGTGAGATTTTGAAGAGAATTTGG
Found at i:1102026 original size:22 final size:22
Alignment explanation
Indices: 1101998--1102043 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
1101988 GCGGCATCTC
1101998 AAAAAAGCCCTTCTTCGTGTGT
1 AAAAAAGCCCTTCTTCGTGTGT
1102020 AAAAAAGCCCTTCTTCGTGTGT
1 AAAAAAGCCCTTCTTCGTGTGT
1102042 AA
1 AA
1102044 GGGTGAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (22 bp):
AAAAAAGCCCTTCTTCGTGTGT
Left flanking sequence: Indices 1101498 -- 1101997
CTCCTCCCTCCCGCATCGGATGTATAGCCAGCCCGTGGGGGTGTGACCCTCGCTTTCCATGCAGC
TTTCCTAGTTAGCTTCCATACCATTCCCAATGGTGAAGGCTTAGTGAGTTGGGCAAGGAGAGAGA
ACGTAAAAATGACTCCTACTCCTCTTTTCAGGAAAGAGTGCTCAACCGGTCTTGTCAAGTGACAC
GGGCCCTATTGAATTAAGCGAGAGAAAGCTCAATCGGGAAGAGAACAGCTTATTCAGTAGCTTGA
TTAGCACATAGGGCATACACTAGTATCAGTGAAACTCTCTTTTCTTGACCTGGAAAAAATCACAC
CAATAGTCCCTCTCCCACTCGAAAATGGGATTCCCACAGGACTCCGCTAAGTGCTCGATGTATAA
AGTCTGACACCACATCTTATATGACCAAGACTCTCTCCTCCTAGGCACTCAATGGGCTAGGGTGG
CCCCATTTCGCCTAATGCTCCCTGTATCGGTGCGTGCGGCATCTC
Right flanking sequence: Indices 1102044 -- 1102543
GGGTGAAATCTATAAATCTACGAAGGAAGGCCAAAAGCGAAGCTTTGGCTGGTCTTATTGGAGAC
ATAAGAGCTTTGTTAAGATCTAGCTTTGCTGCTGGACCTTAGCTCATAGGTTCTATTGTTGATTG
CTATCCCTATTCACTTGGGCCTGCTTCATCGCCTTTGACTTTCATACTTTTCTGCATGTCCCTCT
CACCTTCCTTCGGTCGAGTAATTTCATACCTCCCTCCCTTCAGTCAATAGGCAAGTGAATAGAAG
AGATTTATACGCTAAATCGCCTAGAGGTTAAGAATCTTTATCAAACTCCACAGGGGGATAGGAAC
GTACTGATGGCTTTTCGGGTATGTACTTTTGATCTCGTTTTTCAATTGTAGGCGATAGGTAGAGG
GTTCAACTCATTCTTAGACGACGGTAGGTAGAGAAGGTATAGCTCAACGGAAGGAGTAGCTGCGA
GTGGGAAAGCATTTGTTCTGTTCTCGCATTCGTTCTGTTCGAGGT
Found at i:1139990 original size:14 final size:14
Alignment explanation
Indices: 1139971--1139998 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1139961 GCCTATTTCG
1139971 CAGTAAATGTAGAT
1 CAGTAAATGTAGAT
1139985 CAGTAAATGTAGAT
1 CAGTAAATGTAGAT
1139999 TCCGAGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
CAGTAAATGTAGAT
Left flanking sequence: Indices 1139471 -- 1139970
CGAAGATACCAGAAAAGAATTTAAGACGGATTTGGCATATTTCAAATTGGCCATAGAATTGGTTT
TCCTCTTTTTCTAGGACCATGCTTTTTGAATACCTAATGATCTTTCAATATTGATTCATCGAGGA
AAGGAAAGGCTTTTTGGGCGGTACCTGAGATGAGATGAAAAGAAAAAGACTCATAAATGTTGCGT
ATAACGCTGCTAATTACAGATCTTATTCTACGGATACAGCTTCTGAGGCAAGTTCATCTGTCTGA
AACTCCTACTAGTCCTAGGGTAGGCTTAAGCTCCACCCTCCGAAGTTACCCGTGAATCCCCTCTA
CTACGTTTACCAGAAGGTTAAATAAAGTAAGTAAATCGACTAGTAAAATAGAAAGGGAAATCTCT
TTCGGAAATAAGGAAGCGGGTCTAGAAAGGATATCGCTCTTATGACTCGCAGTTCATTGAATCGG
ACCGGACACGAAAGGAAAGCTACTCAAATGTCAGAGCCTATTTCG
Right flanking sequence: Indices 1139999 -- 1140498
TCCGAGATGAGGTTTGACAAACCTTCTCAACCAGATGAAGAGAAGCAAGTTGATAGGAAAAGGAA
GACGGATGCCTTTGACTTTCATACTTAGTTAGCTGCTTTTGGCTATGCTCCTTAGTTAGTCAACA
GGTCAGGAAAGAGACCCGTCGCAGATGACGAAAATCTGCTTAAGGTAAGGCTATACCGATCTCAC
TTTTCGCTTTTGCTCGTCAGCGAGTCTTCCTAGAGCCCGCCTGGTATTCGTTTAAAGCCTTTATT
TTGTTTGAGGGGTGGGTTTCTTCTCCTTCTGTCTAATCCTCATCGATGTACTGAGCCTAACTTTC
TTTTATGTAGGGAATCTGGATATCCCGGCTAGAGAGCATTTCTTTCCTTGGGGTTGTAAAAGGAG
TAAGCTTTGAACCTATTGTCTGTCAGCGCTTGCCCGATGTGAGCAAGTTCTTTGTAATGGTCTAT
TACCTATGTTCCCATGTCTTTAGATGAATCCATTAAATCTGGTTT
Found at i:1191912 original size:13 final size:13
Alignment explanation
Indices: 1191894--1191919 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1191884 CTCTATCCTT
1191894 TATCTAGTCCTAG
1 TATCTAGTCCTAG
1191907 TATCTAGTCCTAG
1 TATCTAGTCCTAG
1191920 AAAAGGCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
TATCTAGTCCTAG
Left flanking sequence: Indices 1191394 -- 1191893
AAATGCTCGAGAGGTATCAGACAGAAGATGCGATTGTTTTCTTTCGTGAGTGATCTTTATCTGCA
CAATTGGTCTTACTTGGATTACTTCTTGTATCTCTCTTCGGTTGCAGAAAAGTTAGTTGCTTGAG
CCAAGTTTCTAGAATCGGGAAATGCTCGGGATGTAAGTTGCGTAGCGGATAGAACTCTTTCATCC
CCTAGATGAGTTGCACAAGTGAACAGGTAGGGATCTTAGGCATGTACAAGGTGGACCTCTAGTAT
GGAGCACCTCGTGTTGACCACTCGTAGGGATCACATCGACCTAAAGTGCTGCTCGCTTTCTCTCA
CTAGTGGCTTACTCGTTATACCCTGTGGATAGACCTTGTGACGATCTTTCAATCAGAACAAATTA
AGGCGCTCATAGTAAGAAGCGCAAGAACAGGATCAGGCTCTGCTGCAAGACCTAAGAGATATGCC
TATGGGGCTTAAAGACTCGCTAACTCCTCATCATGCTCTATCCTT
Right flanking sequence: Indices 1191920 -- 1192419
AAAAGGCTAACTCTGGAATCTTCATTTCATTATTTAACCGGTTGAGCAAGCAGCAGTAAGAAAGA
GGGAGGTTAGCTTTTCTGAAGCTTAATGCACCATATCCATTAACAATGAAGTCTGGCTATGACAA
GACCTTAGCTTAATGCCGAAGAAGGGGCTATCCCAAGGTTTAAGAAAAAGCAAGATAAAAAGCAG
GTTTCAACAGAAAGAGATAAGATTCCCAAGGAGGACCAACCAATAGCATACAAAGATTTCCTACG
AGCCATAGATGAGAGCATCGGGGTAGAAAAGCCCGAAGCAAATATTGATGCAGATCGGGATTCCT
ATTAAAAGTAAGTGACCAACCTAAGGAGCGAAAGAACTGGGAAGGACAGGGCAGTAGCATCTCGT
TCTAAAATACGGGAAAATGTAAAGAAAGTTAACAATTTCGAAGTTGTATAAAACCCAGATTCTCA
TAATCATCTAATCTCACCCCAGAACCAGTAGCAGTAGCAGGAGCA
Found at i:1196305 original size:8 final size:8
Alignment explanation
Indices: 1196292--1196316 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
1196282 CGGAGACATT
1196292 TCCAACAG
1 TCCAACAG
1196300 TCCAACAG
1 TCCAACAG
1196308 TCCAACAG
1 TCCAACAG
1196316 T
1 T
1196317 GCTACTGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.36, G:0.12, T:0.16
Consensus pattern (8 bp):
TCCAACAG
Left flanking sequence: Indices 1195792 -- 1196291
TTGACAGCCAACGTCCATCTCTTCTAAGGCCCGCCCTGCAAACTCTTTGTAAAGCCATCCAACTC
AACCGGACCCATCCTATCCTCAATAGCCCCCCTTTAGCCGGGGTGGCATCCAACTCTACTGCATG
GAAAGCATCCAACTCAGGGGCTGGCGCATCTTTTCTTGTTTAAATACGCTATTTAATCATTGCAT
CTATCTCTCCTTTTGTCGCCTCTTTTCCTCGAAAAAAGAAAGGAGTCTGAGGGTAGCGTAGCCGC
GAATAAGACTTTGAATAGACGCTGCGAACAAGCTGAAAGGCTAAGATGATGAATGAAAAAGGTGA
TGCTCCGCTGAGAAGGATACCGTTCGTTGGGATTTCCTTTATATACTTTACTTAGGATTGAAAAG
ACTTAAACCCTCTTTTCTTGGCATCTCTTTGCCAATCGAACTATACAGTCATACAAAACTGACAA
GCACAACGTCAAAACCGAACAACGGCCCAAGGCGCCGGAGACATT
Right flanking sequence: Indices 1196317 -- 1196816
GCTACTGTCCAACCAAGCCCAAGCCAAGACATTGAAAAAACCCCATCTAACATTATGAGTAGGGA
CACGGTCTTCCTGCTCGCCACCTTTTGTAAGGGCTCACAGAAGCTGCTAATGGCTAGCTGCCCAC
TTCAACAAAACAAGTTTAGGGACTAGAAAAGTCTGACGCTTCTCCTGCTTCAGTTAAAGTAAGTT
GATAAGTGATGGAGCTGGGTTTGCGTATCTAATGAATCCGATTTCAGTATTGGATTCTTACCTTC
CGAAACCTAGGCAGGCGACTACGAACTCTTAACCCGAGAGCTCAACCAGATTCAATGGAAAGAGA
GAGATCCGTTTCTAAAGGATTCAGCTCTTCGGACTGCTCCACTAGGAGGAAAGAGACTTAGCTTA
TTACTCACGGGGTAGAAACTGACTTCCTAATTGACAAGTTGAGGCAAGAGGGATGCCTTCTAGAG
ATATACCCATTCTACTATCCGCAATGCTGCCTGCTAAGAAGCTGA
Found at i:1209278 original size:14 final size:14
Alignment explanation
Indices: 1209259--1209288 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1209249 CTCCTTCTAG
*
1209259 CAGCGGATGTGCGA
1 CAGCGGATATGCGA
1209273 CAGCGGATATGCGA
1 CAGCGGATATGCGA
1209287 CA
1 CA
1209289 ACATCCGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.23, G:0.37, T:0.13
Consensus pattern (14 bp):
CAGCGGATATGCGA
Left flanking sequence: Indices 1208759 -- 1209258
ATCACCTGCATGCTCACGAACGGTGTCAGCTGTTTCAACAACGGGTTTTGAGGCTTATTTTGCTT
TTCTCTCGAGCTGCTAATAAAGGTACTACCCGCCTTCTTTTTATAGGTCGGGATCGGGTGAATGC
GCTTCCCGGTCCATGTCCATTCGCCTAGGGCTTCATCTAATGCCTTACGTGATAGGGGCTAAGGG
CTATTTCCATGGATTAAAAGAGCTTTGATTCAGGTCTTACGCTGAATTCCCTTGCCTTTCCGTGT
GAAGCCAGACCAGATCGGAGTACAAAAAGTAGTGAATCTTGTCCCGTGGGCAAGCAGCTAGCAAA
GGCTGCAACCTCGCCCTCTGTTTGAGTTTGAGGGAAAGCTTTTCTTGCTAATCAGGTGCTATCAT
CGTCTTATAATGCCCGTCTGCCTTTCTGCTTGAAAGTTTTCCTTTCACCCCGGCTGATCTGGGAC
ACAAGAAAGTAAGCAGCAATCTCAGCCCTCACTCGCTCCTTCTAG
Right flanking sequence: Indices 1209289 -- 1209788
ACATCCGATATCCGATATGAAGGATTATCGGAGCAGGTATAGCAACCAACTATAAGAACAAGAGA
AAGTCCTTATTTATTACAGATCGATTTAGCCAGAATCAGTCGTAGCCTATGCCTTCCGTCTTTCG
ATGATCAGACCTAAGAAAGGCGGGTGGCCAAATTCCGATCAAGGAGAAATTCCCCTGGGTTTACC
CCACTAATGAATCTATCTGAAGTGGTAGTGGATTCAGCTTGAGATGATATATATTCTCCAGGCCA
ACTAATAAACTACGGATTAAAGAACTTCGACTTTGAAGCTGCTAGAAAGCTCACCCACTTCCTAT
TTATTCGAGTTTAGAGTTTCAGAAAAGCTAACCGCCAGAGTCCGATCACCTATTCCTGGATCCGG
AAATGGCAAAGTAGGTTGACTTGCTTTCAAAGAAAATAAGCCTCAAAACTGGTTCTTTCAACAGT
TTGAGTAAAAAACGATTAGTCGAACAAATAAACAGTCCATTTTAT
Found at i:1273545 original size:15 final size:15
Alignment explanation
Indices: 1273525--1273554 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1273515 AGAATAGAAA
1273525 CTCAATCCCATTCAT
1 CTCAATCCCATTCAT
1273540 CTCAATCCCATTCAT
1 CTCAATCCCATTCAT
1273555 TGGGATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.00, T:0.33
Consensus pattern (15 bp):
CTCAATCCCATTCAT
Left flanking sequence: Indices 1273025 -- 1273524
GTGACTCTGAGGTGGCATTCCATCTTATTAAATCTTGTTATGATGATTCTCATATGAATAGTACC
CTCTTACATGATTGCAGGTGGCTCGCGAGAAGATTGGACAATGATCCGAATACTTTGTCGCATCT
CTTCGATACGGATACAGTAACGATCATAGCAATCTCCTCTGGTACCTACAAGGTACATATAACTA
TTAAATATTTGCCGGAAATAGGTCGAACTCGCCATACCCTCTTGTCTAGTGAAGATGTAACGAAC
GCCTACATAACCAGTCCAAGTCAACTTACAAAAGTGAGACAAAGAAGGTATCAGACCTCATGTAG
TTCCCCGGCCATTTTTTTATTACTCAGTTCCTAGAAAAAAGGAAAAAGTACATCTGAGTCCGTCC
TCTCAAAATACCAATCTTGAAATACGAATAAGATCAGAAATGCCATCATTAGGGCAAAGAGGGCA
ATTGCCTCGGTTAAGGTTGTTGTACATGATCTCTCAGAATAGAAA
Right flanking sequence: Indices 1273555 -- 1274054
TGGGATTTATTGTTCCTTCTTCTACAGATTCCCTTACGGCCTTTTCGACGGCCCGCTTCACCTTC
TCCTGAAGGGCTAAATCCATGCCATAGAGGCGGCCCAGGATTTGTCGGAAAACGTGAAGCTCCCC
CTTAGGGGTGCTTTTCCGGGCTCCCCCGTACATGCTTCTAAGAGCATCTACTTGTTCCCCCAAAT
TCTCAATAGGCAAGTCATCGGGTGGGGTCCGCCCGGTTTGGCGTTCAATCTCCGAGCGGAATAGT
TTATTCATCCACATTCGGAGGTCTTCCTTTGTCTCCGCTAGGGCCTTTAGGTCCAATTCTTGGAC
CTTTATTTTGAGTTCCTCCGACCTTTGCTCTTTGGAGGTCTCATTCAGGTCGGGTAGAACTGGTT
CTGCCCCCGGCCCCTGAGGCAGAGTTATGTCTGTTTGCGGGCCTGACGAACTCGCACCGCTACTA
AAGACATCAAAGGTCTCCCCTTCCATATACCAAGAGGAAAGAAAG
Found at i:1281764 original size:12 final size:12
Alignment explanation
Indices: 1281747--1281771 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1281737 AGGGTTCGTT
1281747 CATACTGTAAGA
1 CATACTGTAAGA
1281759 CATACTGTAAGA
1 CATACTGTAAGA
1281771 C
1 C
1281772 TTATCTGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (12 bp):
CATACTGTAAGA
Left flanking sequence: Indices 1281247 -- 1281746
AGCCATTAGCCATTCTCCTTCCTAAAGCATCACTTCAGCGGGAATTTTCCCCGACCTTCTACTCC
GTACTATGAGATAGAGGAAGGAAAAGTTAAGAATGCACTGCACTATCCGAAATCCGATCTAGCCC
CAATCCCCTTTCCCAACTGCTATTCGAATCTCGATGTCTAGAATCGAAACCAAGACCAACGAGCC
CTCGGTCAAGCGAAAGACTTACGACTTTTAATTGAGGATCGCTAGAATCCGAAGCTCTTTCAAGT
CCTCTGGGCACAAAGGAACTAAAGACTACACTATTCTTTCTATCTCTTTAGTTCGAATGCTTTGA
TGCTCTTCTTAATAGAGAGCGCAATTCCAGCAGAATCCTAATCAGACTATTGCTCGTACCTAATC
ACTGCTTAAATTAAATCCCTCGGTGAAAAAAGGGTCAGAATGAGGAAATGGGGTGATCCAGATTT
ATCAGGGCTATCCAAGAATTTCAATCTTTGAATTGAGGGTTCGTT
Right flanking sequence: Indices 1281772 -- 1282271
TTATCTGATCTTTTCGATTGTTAGAATTTTCTTTTTCTTGAACTTTCATAAATCATGAATTTTTT
TAGGACAGTATTAAGGATCTCATCGAAAACTTACAGCAGCTTGCCAAACAAAGGCTAAGAGAAAA
AAGAGAAGAGGTATTACTGGCATAAAATCTACGATTGGATTCAAAAAAGCATAGGCCTCGGGCAA
TTTGGAGAATAAAAAACTACTCGAAAAAAGGGCAGAATTAAAACAGAGACCGATCGAATTAAGGA
TATTAAGCATAACAAAATTTTGTTCTTGGAGATAATTTTGATTGAGTTATTAATATGTTTTGATA
TAAGGAAAAAAATGAAGAAAGGAAAATTAAGGCAGACTAAACAATACTTCTTTGAACTCACCCAA
TCAAAAAAAGGCTTCAATTCTTACAAGAGAATAGAAAAAATCATACTTTTATACAATATCTTAAT
TGAATTATATGTAATGATCAATAAAATCGGTTTAATTCTCTATCC
Found at i:1296387 original size:19 final size:19
Alignment explanation
Indices: 1296363--1296400 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1296353 GTAATTCTAA
1296363 AGACTAGGTAGAGTCTTAG
1 AGACTAGGTAGAGTCTTAG
1296382 AGACTAGGTAGAGTCTTAG
1 AGACTAGGTAGAGTCTTAG
1296401 GAAGGGACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (19 bp):
AGACTAGGTAGAGTCTTAG
Left flanking sequence: Indices 1295863 -- 1296362
ATTTATTTGGGGGCGCCTGTGATTCATGGTCGGGTCACGAAAGAGACTTATGCTCACTTGGTGGA
CAAAGTCCTCCGTAGATTGGCTGATTGGAAAGGAAAGGTTTTAAGTACTGCTGGCCGTAGAACCT
TGAAAAAATAGACTACCTCCATAATTCCTCTTTCTAGTATGCAGAGGGCTTTGTTACCAACAGTA
GTTTGTAAGCGATTGTATCAAATAAATAGCAACTTTATCTCGGGTGGTAATGCAGATGCGTCAAG
GAACCACCTTTTTAGCTGGAATAAGGTTTGTCAACCGAAAACAAAGGGTGGTTTGGAGCTGAGAC
AGGCTAAGGACTATAACCTGGCGGGCGATGCTTTCGAAGTTGGGCTGGAAGCTTCATGAGAGGAA
AGATGGCCTTTGGGGACAGATTTTGCGCAAGAAGTACATGAAGGATGAAGAGGATTTCTTGAACA
CTTAGAATTCCAATACTGCTTCCTCCACTTGGCAGGTAATTCTAA
Right flanking sequence: Indices 1296401 -- 1296900
GAAGGGACTTCGGTGGCGCATCGGCAATGGTAATACTGATTTGTTTTCGATTGGCTGTAGCATGG
ACGAGGACTTTGCACTTCTGTCGCTGACTCACGTTCATTACTTTTTTAGGCTTGCTTCTCTCGAT
CATCAATAGTTAGTCCTTTCTTTCAAAGATGGCCCACTAGCACTAGGCTCTGTAAGACCTTAGTT
GATCCACATGAATAAGTCTTTAATCGAAAGTCGATAGGGAAAGATCCCAGATCGTACGCTAAGGG
CTGGCGAGACAGAACTGATAGTAGAGTGAGATGTAAGAGACTAGGCTTGAGTACCCGTGAGCAAG
AGATTGATTTCTGTTAGTCATTGTTTTCGAGATAGCCCGTTTTCAGCCTCATTATGGCTCTTGAG
CTACGACTCAAGATTGTTTAGGGGCTCCATTTCCTTTTCTTTTGTAAAGGTGTAAGAAGTACGCT
CCGTCCGAAAGCGAGTTAGGGACAACTGCCATAGGGTTTGTTTCA
Found at i:1306203 original size:20 final size:20
Alignment explanation
Indices: 1306166--1306206 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1306156 TTATAGCCTG
*
1306166 TTTCCAATTCTACCTATCTA
1 TTTCCAATTCTACATATCTA
1306186 TTTCCAATTCCTA-ATATCTA
1 TTTCCAATT-CTACATATCTA
1306206 T
1 T
1306207 CTTCTTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTCCAATTCTACATATCTA
Left flanking sequence: Indices 1305666 -- 1306165
TGGAATAAACGATTGAGCTTTATACGCGGCAATAAAAACCGTTCACCTTCTTGAGAGAGCTCCTT
TTTTTACTTCCTTTTATGAATATGTTTGAGTATACGCACAATCAGTAGGAAGGGGTAATGGGCAT
TGCTTTCTACATTCCAAGCACGAATTTCATTCTATTGGGATACAGAGGTATAGTACGAAAGATAG
CTATCCTTCTTCTTCTGACACAGCAAGGCAATCTCAAGCATCACCTTTTTGAGGTTTGGGATAGA
CTTCGAGAGAGTACCCCAGGTCCGGTAAATATCATTAAAAATCGTTAAAAATGAAGACTTTTCTC
GCTATATGAGATAACACTTTTTGCATTTCAATCGACAGCTATTCCCCTGGCAAGAACGCAATCCC
TATAACGCTAGCAAGGAATCCGCTAGCAAGCCCCTCTTCCATATACGTATTTCAATCGCAACCCG
AGAGCGACTCATCAATAAAAAGGAAGTCAGATGATTTATAGCCTG
Right flanking sequence: Indices 1306207 -- 1306706
CTTCTTGCATAAGGAATTCCTTTAGGCGAACAAGCTAAATGTCCGCCCTTGACTAATCAGTTGGG
GCAAAAGCGCTTTCCCCACTTCGGTTTCAAAAGGATAGAGCTTCTCTTCCCCTAGGGAGTTTAAT
TATGAACCTCCTACTCGAGCGCCTATGTTAAAGCCGTTTGGCCTACAGCCGATTTCCAACGAACG
CCGGGTGATTATCCGAACTTCTGCCTCGTCGATTCAATATAGTCAGCTCCTAGCTCCTATAGTTG
AATAGTTGAAAATGGCCCTTTCCTTATGTGAGATCCTAACTAGTACCAGCCAGTCTAACTTCATT
ATTCACTGTCAACAAGAAGGAATCGTTCTAACAACCCGAATCTAGAGGAAGCCGAAATTGCTCCT
GTTTATTCGATCGGGTGTACTTTTCTCTTAGGCTTTCGCTCTCTTGCTTACTAGCTACCGGAATC
GAATTCATGTTCTACTACTACTAACTTCAAAGACGCATCTAACCC
Found at i:1309581 original size:18 final size:18
Alignment explanation
Indices: 1309549--1309583 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1309539 GGAAACCCCG
1309549 TCTAAGAGTCAATTCCAC
1 TCTAAGAGTCAATTCCAC
1309567 TCTAACGAGTC-ATTCCA
1 TCTAA-GAGTCAATTCCA
1309584 AATATTCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.29
Consensus pattern (18 bp):
TCTAAGAGTCAATTCCAC
Left flanking sequence: Indices 1309049 -- 1309548
GTTAGGCCTTGAAATTGATCATCGGTTGAGCAAATACTTCATTCCATAACCATATCTGCCACCAG
ACGATTAGACACCAATCGTCCTTGCAACCTCAACAACAACAACAGGCATAGGCGAGTCAGTGGCA
GGCTCAGAAAGAGTAAAAGTAAAATAGGTCGACTACCGCTCCGTGGGCTTTCCCACCGTGAATAC
TGAAAAGCATCAAGTGGAATTGGTTTCCGTTTAACGAGCATCCTATTTTTATACGGATTTCTACC
CTAGAGATGATTTAACTGAAGTAGGCACCGATGCACCGGCTTTCACGAAAGCAATTAGGGATCTG
ATTCTTCTAACTTTCTGTGCGATGTAGTTGAACCTCTGGGCGAACTGTCTGATGTAGCTTTCACT
GAAAGGCTCACTGTCTAACTCACTTCCTTTATCAAAAGCGGGATTTCTCATAGTGAGTCAATTGT
AGCTAGTAAACCGAATTCTCAATCGCCATCATAGAGGAAACCCCG
Right flanking sequence: Indices 1309584 -- 1310083
AATATTCTTCTTTTAATCGCATATATATGCAAAAGTCCTCATTTTTAACGATTTCTTTTGAGATT
TCTTACCGGAATTGGACTCTAGGCCTTTTTTCCTGGGAAAACTCCAAGTTTGAAACTTTGAATTT
CCCCCTTCCACTCCCAAGGCAATGCGCACGGGAAGCACCTACGGAAACACCAATAAACTCAAGGC
TTCGGATTAGCTTTGACTTTGATTCCACCGCCTTTCATTAATCAGAGGAGTTAGCTTCTCCTGCT
TCATATGAGTCAGGTGCTATTACTTCTCAAGTTGAGTTAAGAGTACGTTCCCCTGAAACAGCTAA
AAAGCAGGTTTCAAGAGCTTTATCTAAGATTCCCCAGAAAAATAAATAACCAATTCCGTGCTACC
GGACTGGGGCAAGAACTTATGGAACTAGATAGCTAGCAAACTTAGCAGTCGGGGTTTCACCGTAA
GAAGAAGGGGACGAAGTGACTCGATCGACTGTTGGAGAGGGGCGA
Found at i:1323787 original size:18 final size:18
Alignment explanation
Indices: 1323766--1323801 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1323756 ATCATCTTGA
*
1323766 CTTTTCTTCTTGTACGAT
1 CTTTACTTCTTGTACGAT
1323784 CTTTACTTCTTGTACGAT
1 CTTTACTTCTTGTACGAT
1323802 ATTCGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.22, G:0.11, T:0.53
Consensus pattern (18 bp):
CTTTACTTCTTGTACGAT
Left flanking sequence: Indices 1323266 -- 1323765
CTTTTTGGCATGGGGATGAATGCTTTTCTTCTTAGGCTTTCGAAAGTACGCACCATACTGAAAGT
TCTCGCCTCAGGGCGATAACCTATTTGACTTTTGGTTAATACCATCTGCTCCGGCGATCTATCAG
CATGAGACTTTTTGAATAGCTCCAGTTCAGCCTAGCATATAGTCTTGCCTTAGTGGATCCCACCA
ACCATATGGCCTATTGTAGCCAATGTAGCCAACACTCTTGAAAGCTCTAGGCATATAGTCTTGGT
CGAGCTGGAGAATGGAACTTTCCCCGCTGCTACCTATAATAGTGAATTCTGCAAACAGGTTCGTC
CAAGTCGGTTCAAAAGTCATCCCTTGCTTAAGGGGTATCGTTCCTATCCGAGGCACGTAAGGATG
AAAGAGAGTTTGACTATATTCACTTATATAATCTACTCTCATCATCATGCGACCCATGTCAGCAA
TTGGTGCTGCCATTGATAACAGATCGGCTTTCTTTATCATCTTGA
Right flanking sequence: Indices 1323802 -- 1324301
ATTCGAAACAGAATTAGGGCGCCTATCTATGAAACCTCTGGGGTTGGGTCCAGTCCCAAATCAAT
ATGAAGCAAACGTAATGTCTTTCTTGGACTGTATCAGCTCTTTCACCTCCCAAATTAGATAGCCT
GGTAGTCCATGCCGTAAACCTTGGTTCCCTTATTCGCCATCCTAGCTGAGACCTCAGAACGTCGT
GAGACAGTTCGGTCCATATCCGGTAAGGACTCTTCTTCGTACAAGCAAAGGGCTAAACTAAAAGA
ATGTACCAAACCACATAAAGACTAACAGAAAGATGGCGCCTTAGCACGTCACGTGTTAACTGCTC
CGTTTGGAATACAGGAGGGGATGGTAGGCAACGATGCTCGTGCAAGAAAAGAGACTGGCTGACTC
AATTCTCTCGGACGGACATTTCGCCTTTCTTTGAAGGAGCAATGTTATTAGTGATGGGATGCTGC
TTTTAGTTGCGTATGGATTGGGTAGCGGAGATGTATGGTGTATTA
Found at i:1336042 original size:19 final size:19
Alignment explanation
Indices: 1336012--1336058 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
1336002 TTCATTGTCT
1336012 TATTCC-TTATGGAACACA
1 TATTCCATTATGGAACACA
1336030 TATTCCATTATGGAACACA
1 TATTCCATTATGGAACACA
1336049 TATTCCATTA
1 TATTCCATTA
1336059 AAGGATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 6 0.21
19 22 0.79
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (19 bp):
TATTCCATTATGGAACACA
Left flanking sequence: Indices 1335512 -- 1336011
ATCGATGAAGAGAAGTAAGTCGCAGAGCTTTCTAGTGGCGGCGAAGAGCTTTCCTTAGTCAACCT
AGTATAGCGAGCTGATTCATTGCTCCTACGCAGCGAAGTAAGTAAGGATTATATAGCAACGAGAC
TCTCGCTAGCACCATTCAATCAAAGCAACCTGAATTCGTCTTACAATCGGCTCCGACTAACGTCC
CCTTCTGTTCTCCTATCGGCTCAGCCACCAATGACTAATTGACTAAATGGAAATACGGGCACTCA
AAAGCCGGTCCGGAAGCAACTTGGGGATCTGACACTGACACTTGAGCTGCTATTTCAAATGTAAT
TTAGCCATGGTGTCTTCGAGTGAAAAAAGGCCAAGTGGAGATATCCCATGTCTTGCTTTGGCTTT
TGTTGGAACCTATGGAAATGGCGAAACAAGTTGGATAGACATCGGAACAAAGTATTGGACTTCCT
ATAAGTAAGCTTTATGAGCTGGCAGCTGCTTTCTTTTCATTGTCT
Right flanking sequence: Indices 1336059 -- 1336558
AAGGATTTTCAATCAAATAGCCCTTAAAATCTGCTGTTAAGCATCATCCTCGGAAGGTCTTTTTT
TATAGCTATGCAACGAGGAGTTTTAGAATGAATGATATAACAAGTCTTCTCGCCAGCTTTCAAAT
TGTGGTAAGAAGAGATTTACCTTTCAAGCCCTGAATAGCCCAAAGAAGATATTCAAAATTCCAAT
CCTCAGCTTGTCGAGAGAAGGCACAAGTTGAGAGAACCCTTTGCCACACTGCTCTAGAAAAGGTA
GAGGTGAAGAAAAGATGGTCCCTATTCTCAGTTTGCTGTCCACATAGCAGACATGATGAGTTATC
CAATTCCACTTCCCCATTGTCGGATACTGGTCTCGGAACGGCGGACTCACCTGGAGAATCCTTAT
CTCAAGGTGCTTAAAAACTGGATTAGCCTTCTTTTACTAAAGCAAGGGAAGCCCGTCAGCAAACC
CCTAAATTGCGAGTGTGTGAGTGCGCAGTTCCTTCATCATTAACG
Found at i:1343090 original size:18 final size:18
Alignment explanation
Indices: 1343067--1343102 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1343057 TACGGACCGA
1343067 GCTATAGCTATATTCAAG
1 GCTATAGCTATATTCAAG
1343085 GCTATAGCTATATTCAAG
1 GCTATAGCTATATTCAAG
1343103 AAAACCTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (18 bp):
GCTATAGCTATATTCAAG
Left flanking sequence: Indices 1342567 -- 1343066
CGTAGGGGCACAAAGGTGGTTTGCAGTGATTGCGATGGTTGATGGATTGCCTGAATAACTCACTT
GACCAGATCCTATAGCGGGAACCTCGACTGACTTTGATTCGTCTAAGGTGCATTTACTTCTCTCA
AGAAATGAGAAAGACGATCGGGAATTGTCTGGTCGGTCTGGCGGGAATCGTATGTTTACTCTCCT
GAAACCAGGTAATCCAGAAACAAGAAATAAACCAAGAAGAAAAGCGATCCTTGTTTTCCGGACTT
GAGAAAGCGAAGTGCTTTAGTCTGGCTCTTTCCTCCCTAATAGTGGATACCTAAAGTGGTTGTAC
CTGAGTAGTGAATAAAAAGAATCTACTGAATCCCTTTTAAATAAATAGGAAGGTCACCCTTTCTA
GCAGTTCTCTCGAGTCCAAGCAAAAGACCAGGTAGTGCACACTGAATCCTATTGGATAGGTGAAT
AGCTTGGGGCAGACGAAGCAGCTCTATTGAAACGTTACGGACCGA
Right flanking sequence: Indices 1343103 -- 1343602
AAAACCTCGAGCTAGTGCCGAATTCACATGTGGGAAAAGCTGAATCCCGATCAAGGCATCTTTTC
GATCTTTATAAACTAGAAATTTCGTAGCAAAAGGGCTCGACTCCTACCGAATTCCCTTGGCCGTC
GCTAGAACCGCCCGTATTGATAGCCTTTGATAAGAGGTATGGTTGGCCAATCGCTAACGAATCGG
CTCCTATCGAATAGTTTGGGCTTACACTCACTTCTCTCTCAAAGGAAAAGCAACTGAAGAAGAGG
AGGGCATGTCTCAATATTGCATAGTTGATTCGGGTCATAGCATAGTAGTTGTTCCATATGATGCT
GCCCGCTGATTGGGCTTTTTCGTATGGCGAATGAAGGTTTCTTAATTAATTAATAAGGAAGGCTC
AGAGGACGAAAAATAGTAAGGCGAGGAGTCTAACTTTCTAAATAAAGAATACCCGTAGTACGAGC
TATTCCCTTAATTAAGGGGATGAGCGGAGTTTATAAGATTCTTCA
Found at i:1345778 original size:9 final size:9
Alignment explanation
Indices: 1345764--1345789 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
1345754 AGTCAAAGAA
1345764 ATATAGTAT
1 ATATAGTAT
1345773 ATATAGTAT
1 ATATAGTAT
1345782 ATATAGTA
1 ATATAGTA
1345790 GAATGCACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (9 bp):
ATATAGTAT
Left flanking sequence: Indices 1345264 -- 1345763
CACCCCTCTCCTTTTAGTCGAGTCACTTCGTGCCCTGAGCCTTACTATTAAAGCTCAGCCGACTC
TCTTCAAAGCTTCTTTATCCCTCAAAATCCCACCTGCAGCATAGAAGCATGCCGAACCTCCCAAC
ATGGGACCAATGAACCGTCCTCTTACTTTGCTTTGCCCGCTCATGCCTAGTGGGATCTCCTTCTG
CTCGTCCACAAAGCCTGTGGGCGGAGTTTCGTTTAGAAAAACTAGATGATGGATGTGATTCAACA
ATCAAAGAATCAAATTCCACATTTTCCTCTCCGACTTCTCCTATTGGATCTCCTGGAATGGACTC
CCCTTCTCCTTACTAAGATGTCAAGCAATGGGAGATTATGTCAGAGCACCATCCATCTTGGCTAA
GGTCCAGCTCCTCCTGTTCGTTTTCCACTAGCTTCTAAGTGCTACCCGCTTGGGATTCCTTCAGC
TCCAGTCGTAACAAGGCAGCAGATAAAAAAGAAAAAGTCAAAGAA
Right flanking sequence: Indices 1345790 -- 1346289
GAATGCACCTCGCACCGAGATACCGGAACGAGAGATACGATCAAAGTGACGGCTAATATGTCCTT
GCTTAATAAGATACCTCCACTCCAAGTACAACGGAGTGAGTCGATTTAGATAGAAGTACCTTAGT
ACTCGTAGCTGTTGATTGATGGTTTGTTAGGGGATCCGCTAGGCGAACCAGCGTAAGGCCGTAAA
GCGAAGCCTGGGCTGAAAGAAGGGTAAAGCTAGTTCGAAGTTCAGTTTCTTTGTGATCTCCCAGT
AAACGGTATTCATATGGAAAGCCAACTGCTTATTTTTTTAGTGGCTTACCCGCTCCAACTTCGGA
ATAAACTTCATCATGCGAAGAAGTCGACCCCTCTGCATACTCTTATCTTACTTGACGCCCGCTTA
AAGGTATGGCTCGCACTATAAGGGACTACCAGCTAAATCACCTTTCACATCTTTCTTTCAAGTCA
TTCGTTGAAAGTCTGGGCAAGTACTCGGACTACGAGTGAGTGATT
Found at i:1369835 original size:19 final size:19
Alignment explanation
Indices: 1369811--1369849 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
1369801 AGTGGAAGTT
1369811 TCAGTTGTACCTCGTACGG
1 TCAGTTGTACCTCGTACGG
1369830 TCAGTTGTACCTCGTACGG
1 TCAGTTGTACCTCGTACGG
1369849 T
1 T
1369850 AAGTCACTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.26, G:0.26, T:0.33
Consensus pattern (19 bp):
TCAGTTGTACCTCGTACGG
Left flanking sequence: Indices 1369311 -- 1369810
TCAGTAAAAAAGGCATACTCAAAAAGGGTTCTTTCGAGTTGAATGTTGGGCATTCCATGATTAAT
AAAGTTGCAAGCTTACTCTTCTTTGAGAAGGGTCCTAACCCTTTTGTTTGAGGGTGAGGGCTCTC
GAGCGTTGGCATCACATCAGTCTAAGTTGGATCACAGCTATAATAGAATTCGGATTTCTAGCTCT
CGAAACTAAGCGACTAACCCTATCTTCTAAGGCAGGTGGGATACTCAGAACCTTTGCTAGCTAAG
TTGATGGATCATCCAAGCGCTCGCTCCCCTTTCTACACATACCTGCTACTTTAGTAAATAGAATC
TCTCACTTCGGTGCGCTAACAGGCAATGCCACGGCCTTTCCCTCACTCGACACAGGCTAAGTTTA
CCCATTCCCTTATCCCTCTTTCTAACTAAGATCCGCTGCTATTTCCTAATTCCGTGCCATCCCTT
TGCGGTACAGGATATTTGCCGATGGATGGAGTTGTAGTGGAAGTT
Right flanking sequence: Indices 1369850 -- 1370349
AAGTCACTAGAACGAGATAAGCAACTAGGTTCAGTAGTTAGATATAGTATTCACTAATCAGTGAA
GCGCTAACAAAGTCGTCCGGTAAAGCATCTGACGAACCATGAAGTCCTTGAACTCTCCTTGGGAA
GACAGACCTATTGATCGGCTTGGAGTTCCATATCTCTGAAGATTAACTACTAGCGCGCAACGGCT
TAACTTGACGTTGCCCAAGCTCTTGCTCAGCACAAAATTGTAGCAACCAAAGATAGGTCTTATTC
ATTTCTCAAGTAGAGATAGCTAGGAGTTGTTCCTCAATGGAAGATGCTTACTATTCTTGTGTCTA
CGCTTCGGCCACCCTTTCGTGATAGAACCAGAAAGACTTTCCTCAGGGCTTGCCAATGCCGGGCG
TACAACCTTCGCATGAATCCGGCTAAGTGTGCATTCGGTCTTTCTGCTGGGAAGTTTCTAGGTTT
TCTAGTTCACAGCAGAGGGGTCGAAGTTGATGCTTCTAGACTCAA
Found at i:1384532 original size:10 final size:10
Alignment explanation
Indices: 1384517--1384545 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
1384507 GGGCCCGAGG
1384517 AGCGAAGCGT
1 AGCGAAGCGT
1384527 AGCGAAGCGT
1 AGCGAAGCGT
1384537 AGCGAAGCG
1 AGCGAAGCG
1384546 AATAAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.41, T:0.07
Consensus pattern (10 bp):
AGCGAAGCGT
Left flanking sequence: Indices 1384017 -- 1384516
CGCTTTATTCTATGTTATGGATCTCCTTAGGAAGTTTTAACGAGCCCTTGATCCTAGCCTTCGGA
AGCGAAGCTTCTTAGGAAAGGGGGGGATGTTCTATATGATAATTGCGCAGCTAGAAGCGGGTAAT
AAGGCCTTTACTTTAGTCACGATCATAAAGGTGGAAATCCGGACGCTGGTTCAAGGCCTTGTCAC
TATAAGGGCTTGGTCATAATTTACTTTCATGTAAGGGAGACTGGCATCGGCACCGTCTGGTCGGG
CTGCACGACCTTGGAATCCTTGGTTTGGTGACTGATCAAAATAATAAAGGATGATGATGATGATC
AGAGCATGTTCGGGGATGAATGTAGTCGGGGGAGGTGCTTCACCCAATATAGATCAAAGAACTAA
GATTTTCGAAAGGATAGGAAAAAGTCTTGTCATAAGCTTTCTCCAAATCAATCCCTGGCATCACT
GGTTAACCATCCTGAAGCATACTCGACACAGCGAAGGGCCCGAGG
Right flanking sequence: Indices 1384546 -- 1385045
AATAAATAGTAAGGAGTTTAGGCGAAGTCGGCGAGCCGAAAACCTTTGACCACCTACTTTTTAAC
ACCTATGAATGAAATTGGCATAGTACGGGACACAAAAGATAATCAGTTGCACCCGAACACAAAAG
CTTCTAAATCAATAGAAAATCAATTGTCATTGGACGAAGTTTATTGAGATAGAAATCAATGAATC
AATACTAAAACTTAACTTCTTTTAATAGATTCCAATATATTCGAAGTAGCTTAGCGGACAAGTAG
TTCAATCATTGAATAAAAGAGACCGAAGTTCCCAAAGAAAGGGATTGAGCCCGAGAACTTCCATC
AACATTGATCTTCACACAATGACCTTGAGGCATTTTTCAACCAATAAGAACTTCATGTTTGAGGC
GGGAGGAAAGGAGCATGGAAACATCAGCAGCTTCCTTGGCGCGAGTAAGGATAATTTGAGTGCTT
TGAACAGGCCAAACGAACTCAGCATCGTGTAGCAAGCAGTTGCGC
Found at i:1397108 original size:205 final size:204
Alignment explanation
Indices: 1396756--1397164 Score: 809
Period size: 205 Copynumber: 2.0 Consensus size: 204
1396746 CCATACATCA
1396756 GACAATATTATCGTGGTGCAGGAAGCCCTTCACACCATGAGAACTATGAAGAGGAAAAACGGCAC
1 GACAATATTATCGTGGTGCAGGAAGCCCTTCACACCATGAGAACTATGAAGAGGAAAAACGGCAC
1396821 TGTGGCTATTAAGGTTGATCTGGAGAAAGCTTATGATCGTATCAAATGGAGTTTTTTGCAACAAG
66 TGTGGCTATTAAGGTTGATCTGGAGAAAGCTTATGATCGTATCAAATGGAGTTTTTTGCAACAAG
1396886 TCCTTGAAGAAATTCAGCTTCCTACTTCTTGGGTAAATCTCATCATGAATATTATTTCTACTAAT
131 TCCTTGAAGAAATTCAGCTTCCTACTTCTTGGGTAAATCTCATCATGAATATTATTTCTACTAAT
1396951 ACTTTTTCT
196 ACTTTTTCT
1396960 NGACAATATTATCGTGGTGCAGGAAGCCCTTCACACCATGAGAACTATGAAGAGGAAAAACGGCA
1 -GACAATATTATCGTGGTGCAGGAAGCCCTTCACACCATGAGAACTATGAAGAGGAAAAACGGCA
1397025 CTGTGGCTATTAAGGTTGATCTGGAGAAAGCTTATGATCGTATCAAATGGAGTTTTTTGCAACAA
65 CTGTGGCTATTAAGGTTGATCTGGAGAAAGCTTATGATCGTATCAAATGGAGTTTTTTGCAACAA
1397090 GTCCTTGAAGAAATTCAGCTTCCTACTTCTTGGGTAAATCTCATCATGAATATTATTTCTACTAA
130 GTCCTTGAAGAAATTCAGCTTCCTACTTCTTGGGTAAATCTCATCATGAATATTATTTCTACTAA
1397155 TACTTTTTCT
195 TACTTTTTCT
1397165 ATAATTTGGA
Statistics
Matches: 204, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
205 204 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (204 bp):
GACAATATTATCGTGGTGCAGGAAGCCCTTCACACCATGAGAACTATGAAGAGGAAAAACGGCAC
TGTGGCTATTAAGGTTGATCTGGAGAAAGCTTATGATCGTATCAAATGGAGTTTTTTGCAACAAG
TCCTTGAAGAAATTCAGCTTCCTACTTCTTGGGTAAATCTCATCATGAATATTATTTCTACTAAT
ACTTTTTCT
Left flanking sequence: Indices 1396256 -- 1396755
AAGAGGAATTGCAAGACATGGTGATTAAATTTTACTATGATCTCTATACTGATCCTCACCCTGCT
CTTGATGTTCGTTTGCCTTCCCTCTGCGAGCACTGGAAATTATCGCATGCTGACCGTAATATTTT
GTCGCGTGATGTTACTTTGGAGGAGGTTCGATCAGCAGTATTTGACATGAGCCCAAACAAAAGTC
CTGGTATTGATGGATTCCCTGCTATTTTCTTTCAGAAAGCTTGGCACCTCGTTGGTGAGAGTATC
CTTGCTTTGGTACGATCTGCTCTTCAGGATGGTAAAATTGATCCTACTCTCAATCGAACTTTAGT
GGTTCTTATACCAAAGATCTCTGGCCCGGAAAGAATTTCTCAATTTCGGCCAATAAGCCTCTGTA
CAGTTCCTTTGAAAATCATTACTAAGCTTCTGGTTGATAGACTCCGCCCTTTCTTGGACAACTTG
ATCAGTAAATCACAATCTAGTTTTGTTCCTGGGCGCCATACATCA
Right flanking sequence: Indices 1397165 -- 1397664
ATAATTTGGAATGGTCAGCATTTACCTTTTTTCTCCCCTTCGCGAGGCATCCGTCAGGGTGACCC
GCTCTCCCCATATCTGTTCATATTATGCTTGGAAAAACTTGGCCATCTTATTGATGAAGAAGTTC
GATTGAACCGATGGAAACCCTTGAAGATCACACAATCTGGTCCAATTATTTCTCATATTTGCTTT
GCTGATGATATAGTTCTTTTTGGTGAAGCTTCAACTACTCAGCTTGATGTTATGATGGATGTTCT
TAACAAATTTTGTGAAGCCTCAGGCGAAAAAATTAGCCTTGTTAAATCCAAAATTTTGGTCTCTT
CCAATATATCCCAACAAGCTGCCCTTTCATTAAGCAACTATTGTGGTATAGCTCTCACGGAAGAC
TTTGGCAAGTACCTTGGAGCCCCTATGATACATGGGAGGGTAACTAGAAATACTTACAGCGATAT
ACTCAGCAAAGCTCAAGCTAGATTGTTGTCTTGGGGCAATCAGTA
Found at i:1433505 original size:18 final size:19
Alignment explanation
Indices: 1433472--1433507 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
1433462 AAGAAGGCTG
1433472 CTTTTACGAATCCCTCTTT
1 CTTTTACGAATCCCTCTTT
*
1433491 CTTTTAC-ACTCCCTCTT
1 CTTTTACGAATCCCTCTT
1433508 GGCTAGCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.14, C:0.36, G:0.03, T:0.47
Consensus pattern (19 bp):
CTTTTACGAATCCCTCTTT
Left flanking sequence: Indices 1432972 -- 1433471
CGTGCGGAGGAATGAATCTAGTCACCATACGATTTAGCTTTTTAGTATGGACATGGCTTAAGGAA
ACGAATGACTCGGGAAAAAGTAGTTCGGCGCCGGGAGAGGAGAGAAAATCTTTCATTCTCGATGA
AAACCAATCCGGATTTAGAGTCGACCATTTCTTCTGGCACTTGATCTGAACTTTCATTACGATTA
CGGTGCTTTGCCTCCTCTACCTTTTTATTTTCGGTATATCACATCTATTGTTTTCGCCCGTCTCT
CAACAATTCAAAGAAAGGCAGCTTTACTAGTTGTTGGGAAAGGGATGAAGGATCTCCGACAACTC
AAATATTGACCACAGCCCCGGTTCGATGCCCGCCTGCAGCGCCTATGAGCACTCTTCCTAAGACA
GGAGATTCGACTTGGATATGTGCTTCTTTTCTTCCTTTTCTTCTCCTGCCATCCATCCCTTTCTT
TTTCTTCAACTCACTGGGCTTATTCAATTGATAGAAAGAAGGCTG
Right flanking sequence: Indices 1433508 -- 1434007
GGCTAGCTTGATGGACAAATGAAGAGAACTCAAACTCTTTCAGCTAGCTAATGTTACGCTAACAT
CTTTGAATTCAATAAATCATATTCAGAATAGGATTGCTTTACAACCGATGAGAACTTTCTTCGTT
CTTTCAATTGATCACTCCTCCCCTTGAGAGTTCAGCTACATTTCGACTCTACGATATTTTCCAGG
GAAATATGTAAGAAGTTTGGCCGGGAAGATGCCGAACAGGACGAATGGAGGTTCACCGCTACGCA
GCGAACTGTACGAAGGATATTTATCTGAATCTATCGTAACTCTTACTGATTCTAATTCTAAGTAA
AGTCAGAAAGATAACTTCTGCTCGAAAGTTTTGCTTCAGAAGTCGCTCTGCCTTGGTTAATGGTA
GGCGATTTCAATGATGTCTGTAGTAGTAGCGAGAAGTTCGGTGGTGCTAGTGTGTCTTTGGAGCG
GTGCTTGAGGTTTTTCAATTTGATTAGTGCATGTAACTTGGCTGA
Found at i:1465549 original size:12 final size:12
Alignment explanation
Indices: 1465532--1465557 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1465522 ACAGATGGAT
1465532 ATCTATCGTATA
1 ATCTATCGTATA
1465544 ATCTATCGTATA
1 ATCTATCGTATA
1465556 AT
1 AT
1465558 TCTTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (12 bp):
ATCTATCGTATA
Left flanking sequence: Indices 1465032 -- 1465531
TCATACCAAGTCTTGCAGAACCCTCTCCTCCATTCCCCTACTCCCAAAGCATAAGCTCAGAGTCC
AAGCGAGAAAGCATCTCTTGTCCGGAAAAATCCCTACCAAAAAAGGATATATTCTGGTTTCAGAA
CCGCCGGGACGATTATCCAGTGACCGGGCTAGAGCTAGTTGGAGAGCCGCGCCTTTGTCCGCATC
AGTGGCCACCGGAAGCAATAGGTTGTGAATCAGAAGTTGAGTTAGCAGGGCTCGTAGATCAGTAA
GTTGAGGGCAGCAGCTTTTGTGGAGAGTCAATAGGTTTGTAAAGACAGACTAAGGCCCTTCCCTT
TATTTAATCCGCTAACCCTACGCCCATCGGAGACGTAACAAGTAGCGCACAATCGAGCGAGAGAA
GGAAGAATGGACTCACCTCTCCGGTTCGCTTCTAGGTCTCGTTAGAGAGATCAGAGGATGTGAAT
TGGCTACGGCTTTTCTGGATGTAGATGATATCTATACAGATGGAT
Right flanking sequence: Indices 1465558 -- 1466057
TCTTATATATATTGTTCAATTTGGTCTCGTGATCTCATCTACGCAAATGTGCGGATCTTTCTTTG
AAGGGAAAAACTTATTTTCTTAAGAAAAGGCACTCTCCAATATCCATCACATTTTCACACCGGCC
ATCGGACCCATGAAAGTCCCCTTTTTTTAATAAGATACACGTCCCATTCCAACGGGGGTTCGGGA
CGAGACTCAGATCAGTAACTAGCTAGCCCCATTTCTCGGCTCCTCCTCTGAACAGGGCAAAGCCC
ACTCCGACAGACCCTCAGAGACTGGATGATGCTACACCCGAGTCAAACTCTTTCAGCTACCATAC
CCCATATCTGTCTTTTGTTTACTTCTCGTAGTCAAAAGGCTTATATTCAAGACCCCTTTAAGTTA
AAGGCAGCTGATCCCGCTAAAGCAATTGTAACAGCGAAAGAGTGAGGAATCACACCTCCGGCTCT
CTCTTCTCATCTTTTCCCAAGATAGTCAAGATAGTGTTCTATTAT
Found at i:1477339 original size:20 final size:17
Alignment explanation
Indices: 1477301--1477334 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1477291 TGCGGTCATT
1477301 AAGAAGAAAGCTAAGAA
1 AAGAAGAAAGCTAAGAA
1477318 AAGAAGAAAGCTAAGAA
1 AAGAAGAAAGCTAAGAA
1477335 GAAAACTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.06, G:0.24, T:0.06
Consensus pattern (17 bp):
AAGAAGAAAGCTAAGAA
Left flanking sequence: Indices 1476801 -- 1477300
CCGCTGCTAATGTGGAATGGTGTGATATGTTTAAAGACTTCTCAATCTACAACTTACCCAGAACA
GATTCTGATCACCACCCTCTGTGTATCAAGTGCAAATTCTCTTCTTATTATCTTTCTTCGGGACT
TCCTTTCCGTTTTGAAAATGCTTGGATGTCCCATTCTTCTTTTGCTGATACTCTTGCTTCATTAA
GGGATTCCTCTTGCTCGGATATTCTGATCAATCTATCGCAGCTTTCTAATAATCTTGTCACCTGA
AGTAAGGAGGTTTTTGGGCATATTAATAGACGAAAGAGGAGGGTTCTTGCTAGGCGGCTTGTGGG
TATTCAAAAGAAGCTTGAACAAGTGCCCAATGATTATCTTGTTAATCTGGAATTCATCCTAATTG
AATAGTATAATCTGATATGCTTTTAAGAGGAAAGGATGCTACAACAGAAAGCCCGGGTTGATTGG
CTTAAGTTTGGTGACAATAATACCAAATTCTTTCATGCGGTCATT
Right flanking sequence: Indices 1477335 -- 1477834
GAAAACTATTGCAGCCTTGAAGAATGATAATGATGAATGGTGCTATGATAGTTCTGTTTTAAAAG
TCATGGTCCAAGATTTCTATGAAAAGCTTTACATGAATGAAAGCATCGCATCAGCCCCAAGTTTA
CCCCTTTTTTCGAGGTTGGAGACTTTCTGATTTGGATGTGGATCTCCTCTCTTCGGCTGTCTCTA
AGGATGAAGTCCGTCGAGTCGAGCACTTTTTGATATGCACCGTCCGGGCTTTGACGGATTTCCTG
CTGCCTTTTTCCAGAAAGCTTGGTCCGTAACAGGTGACCATCTCTTTTTACTTGTAAAAAATGCC
ATGGAAAGAGGTTCTTTTAATCAAGAATTGAATAGAACTCTTATCATTCTGATACCTAAGATTGA
GTAGCCTGAGAGAATATCTCAATTTCGCCCCATAAGCTTATGCACTGTACCGCTGAAGCTCATAA
CAAAAGTCTTGGTTGATAGACCTTTGTTGGAAAAAATGGTGGGCA
Found at i:1510946 original size:21 final size:21
Alignment explanation
Indices: 1510913--1510956 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1510903 AGCTGCTGCC
*
1510913 GAGACCTTGCCTAAAG-AAGAT
1 GAGACATTGCCT-AAGCAAGAT
*
1510934 GAGACATTTCCTAAGCAAGAT
1 GAGACATTGCCTAAGCAAGAT
1510955 GA
1 GA
1510957 AGCTATAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (21 bp):
GAGACATTGCCTAAGCAAGAT
Left flanking sequence: Indices 1510413 -- 1510912
AAAATTCTCTTTATTCCACATTCTCACCTTTGTTGCAAAAGCTTGGAGTTTACTCTGCATATTAC
CAGTCTAACTACCCCACTCCCCTTTCAAAAAATCCTTTCAGTTGGGAAGCCACGCATTCTCGAAA
GGCAATGGAATCTATTCCCTATGCATCAGTGGTTGGGAGCTTGATGTATGCTCAGACATGCACTC
GGCCAGATATCAGCTTTGCTGTTGGAATGTTAGGCCGATATCAAAGTAATCCCGGAATGGACCAC
TGGAAAGCTGCGAAGAAAGTTCTTAGGTACTTACAAGGCACCAAGGATTACATGCTCACGTACAG
AAGGTCAGATCACCTTGAAGTGGTTGGCTACTCGGATTCATACTATGCCGGATGTGTGGACTCGA
GGAAGAAATGTACAAAATGCAAGATATTTGGACATAAGGATTGCTCTCACCCGAAAGGCGAGCAG
AAGTGGTTTCCAAAGCCTAAGGAATATGAAGTTAGAGCTGCTGCC
Right flanking sequence: Indices 1510957 -- 1511456
AGCTATAGTTGTAGGCGAGACAGTAGCTATTGAGACTCCTGTACAGTCAATAGAAGGCAAGACTC
CCCCATTGTCAGTCACTACCCAGGTTGTCCAGATCTCTGATGAGGATTTTCCTCCAATATCTGCA
GGTAAAAGCGCAAATTCTTCCTCCATAGTGAAAGGAAAAGGAGTAACTAATTCAGCTAGTTCTTC
TAAGTCATCTGATAATAGATTTGCTATACGATAATCTCTTTCTAATGAAATACTTGAGTCTGCTG
CCACTGACTTGATTGAGTCAGCTGCTACTGAGATAGTTGTTAATAAGCCAGCTGCTGCTATAACT
GTTAATGCAAAATCTGATATTATTCATCTTTCACCAAAGAAAACTAGAGGAGCTTCATCCCGTGT
GGCTGAGATAATGAAAGAGGTTAAGCCTAAAAAGAGGAGTCCAACTAAAAAGGGGTTAAGCAAGT
CAGGCTATCGTGTGACTTTCATTGACCATTCATGATCGAGCTTAG
Found at i:1519460 original size:17 final size:17
Alignment explanation
Indices: 1519440--1519478 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
1519430 AATTCCACTA
1519440 CTAAACCAATTAACAAT
1 CTAAACCAATTAACAAT
1519457 CTAAACCAATTAACAAT
1 CTAAACCAATTAACAAT
1519474 CTAAA
1 CTAAA
1519479 TTATATATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (17 bp):
CTAAACCAATTAACAAT
Left flanking sequence: Indices 1518940 -- 1519439
TTGAGAACCTCTATTTCTACATCTAGGATTCGACTTGTATCATTGATAATAATAGGAACTGAACC
ATTATGGCAAAGAAAAGCTTGATTCATAGGGAGAAGAAGAGGCAAAAATTGGAACAAAAATATCA
TTTGATTCGTCGAGCCTCAAAAAAAGAAATAAGCAACGTTCCATCGTTGAGTGATAAATGGAAAA
TTCATGGAAAGTTACAATCCTCACCGCGAAATAGTGCACCTACACGTCTTCATCGGCGTTGCTTT
TCGACCGGAAGGCCGAGAGCTAACTATCGAGACTTTGGACTATCCGGACACATACTTCGTGAAAT
GGTTGACGCATGTTTGTTGCCGGGGGCAACAAGATCAAGTTGGTAAGGATTAAAATATCCCTTCA
TTATCCGCATTTTCGTTCTTGATTCTTGATACGAAAGGTCTGGATAATATTTGTTCAGAACTGAA
GAAAGTACCTGTCTTAGTTCAGGGCGATTTTATCAAATTCCACTA
Right flanking sequence: Indices 1519479 -- 1519978
TTATATATCAATTCAAATGATTATCAATTCTTACTATCAATTATTATTAATTTATATTAGTTGTT
ATTAATTTATATTTTTATTCTATTTTATTTTTATTTTCATTTTGGCAACTTATACTTCTATATTA
TTGAATTTGAATATGTCTCAAAATCTGAGAAATTCGTGGGAGGGGTCATTTTTGGATCCGGAACG
GGTAGATTCAAGAAATAAGAGAATTAAGGATACCCACCAGAAAAACTAATCCAATCCATAAAGAT
GTACCGGAAAATACAATATTTTTATTACTCGACCAACCATCAGGAGAAGCAAATACAACAGGTAC
ACTAATCAGTAAGATTGACGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAATAGTGG
AGTACGAAGAAGACTAAAGCAGCCGCAAAAGGGATATTCATAGAGGAGACGGATGGCTTCATGGC
GGAGGCGGAAGAGGAACCGGTGGAAAAGGAACCGATGGCGAAGGA
Found at i:1526224 original size:13 final size:13
Alignment explanation
Indices: 1526206--1526232 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1526196 GTCACCGGAT
1526206 TCCTTCAATTCAA
1 TCCTTCAATTCAA
1526219 TCCTTCAATTCAA
1 TCCTTCAATTCAA
1526232 T
1 T
1526233 ATGTATGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (13 bp):
TCCTTCAATTCAA
Left flanking sequence: Indices 1525706 -- 1526205
AGCCTTTACCGCTTTTATTCGGACATGGGGTGGTGATTTTTTTATTTCACGTTGACAAACTAATA
GGCATGCTAGATCACGCATTTCATCTATCTATATATACAGATAAAATAGATTGACCTATAGGTTC
ACACACGATATCTTTCTATACAGTATCAACTCATATGGCCATGTTCGATTCGGTGGAATAAAAAT
AAAATAGAAATTAGCTTTCGGAGAGATGGCTGAGTGATTAATAGCTCCGGTCTTGAAAACCGGTA
TAGTTCAAAACAAAGAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTCGATGAATCAAT
TTTTTTATTTATTGCTTTTTCCTGGCTTCCTTATTAAATTAAGAATCTTAATATTAATAATTAAT
AAAAAGGGAATGTCTCGGCTGGGTGGAATAGCCGAGCCAGAAAAAAAAGTTTAGATATAAAATGA
GTTGAGAAGAAAGGAAAACAGAATACTTTTAAAATGTCACCGGAT
Right flanking sequence: Indices 1526233 -- 1526732
ATGTATGGTGGAATCAAATTGATTCCTACTTTAAGCATTAGATCTCCTGTCTCAGTTAAGAGGAG
TCATGAAAAGAACAGGCTCCAAATCACGATCAATTCCTTTTTCAAATCCCGCTGCGGCTGCGCGA
GCTCTTCCTGCGTGCCATAAATGACCCACGAATAGGAAGAATCCTAGAACAAAATGGGAGGTAGC
TAACCAACTTCTCGGCGAGACATAATTAACTGCATTGATCTCGGTAGCTACACCACCTACAGAAT
TTAAAGAACCTAAAGGAGCATGGGTCATATATTCCGCAGAACGCCGTTCTTGCCAAGGTTGTATG
TCTTTTTTCAACCTACTCAAGTCCAAACCATTAGGACCCCTTAGAGGTTCTAACCAAGGAGCGCG
CAAATCCCAAAAACGCATAGTTTCCCCTCCAAAAATGACCTCTCCGGTCGGGGAACGCATTAGAT
ATTTACCTAACCCAGTAGGCCCTTGAGCGGATCCCACGTTAGCCC
Found at i:1531589 original size:17 final size:17
Alignment explanation
Indices: 1531567--1531600 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1531557 CTTTCGCTTT
1531567 CCATCGAGTCTCTTAAC
1 CCATCGAGTCTCTTAAC
1531584 CCATCGAGTCTCTTAAC
1 CCATCGAGTCTCTTAAC
1531601 TTTCTATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.35, G:0.12, T:0.29
Consensus pattern (17 bp):
CCATCGAGTCTCTTAAC
Left flanking sequence: Indices 1531067 -- 1531566
ATGGAAGGAAGTCAAATTCAATTGTGCAAGCTGTTTTATTTTTCTCCCAAGGTAAGCAGGAAGGC
CCATTGAAAAGCAGGCTCTAGAACAAGGATATTGATATTGAAATCCATCTGGTTCCCGGGCTAAA
GCCCTAACAGCCTATTGATCGGGAAAGGAAGTTCCAATGAAAGCCTTTCAAAGGTTATACATTAG
CGATTGATCGACCGGAGTGGTTTCAATAATTGTTGCCCTCGATCGAGTAACAGGGGAGCTGGGGA
AGGCGAAGGAAAGGCTGAGGATAATGCAACTACAACTGCCTGAAAAGCCTTACTACTGGAGGGCC
CTAGTACAGCAATTGGAGTGCCAGTTGACATCCCTCAGGCTAACATCAAGCTGATAAAAAAGGAA
TTTCTCGCTTATTCGATAGGATAAGGACCTAAGCAAGGGTATGATATAGGAAGAAAGTACCTTTG
GCTTGAGGTGGAAAAATCTCTTAGCCCGTAGATCCCTTTCGCTTT
Right flanking sequence: Indices 1531601 -- 1532100
TTTCTATTAGCTTTCAATACTACATCCATATTACGTAAAGTACCTATTCTGTGCTAGCTTTCTAG
TCTTCTCCACCTAAAAACGGTAACGGTTGTAGGTGTCCGCTCATAGCTTCTTGTTCCTCAATCTT
TCTTTCTAACAGATGGAACTACACAAACAGATTGAACGACTGGAAAGACCGGGGAAGTACCCTAG
TTGGCTAGTCCCGTTCCACTCTTCTCTCAATGTCAGTGCTTGGGGATCGGGTACAGCGAGATCAC
TTTTCAGCTTGTTAGTCTGCTATGCATGAAAGCAAGGTTAGCAAGCTAACGGGAATCCGGTATGT
GATCAATTTGTATACAAGGTCTCACATGTAGAGATGCCCTACCTATAGCATAGAGGAAGAAGTTG
GAGTCATTCAGCAATGAAACTTCCAGTGGACGGAAACTTCCCTAAATATCCCATAGCACCATAAA
ATGTTGACTTGTTTTTAGAAAGCGTAGAGTACGAAGTAGGGGACG
Found at i:1553243 original size:12 final size:12
Alignment explanation
Indices: 1553226--1553260 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
1553216 GAAAAGAGGA
1553226 GTCTGATGCCAG
1 GTCTGATGCCAG
1553238 GTCTGATGCCAG
1 GTCTGATGCCAG
1553250 GTCTGATGCCA
1 GTCTGATGCCA
1553261 AGACAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (12 bp):
GTCTGATGCCAG
Left flanking sequence: Indices 1552726 -- 1553225
GTTCAAAGCTGCTTTCTCTAGAAAGTCTCACTGACGAGCCAATCTCTTAATCTACGCTAATTGAT
TGAGTTGATTAACCTGAGCGGGATCATGTCTTAGTGAGAGAAGCCGTTATGCTTGATGAGGATTT
ATCCCCCTGGTTCTTTGATATCTATCATTGAGTCGGGATCATAGTTCTTTAAAGGCGCTAGCCAG
GAAAGGAAAGACCTTGAAAGGACATATCTAGCCAAAACAAAGAGTGTAGGGAAGGCGGATTTGAT
AGAGTTTGACGAAGAAGAATGATTAGGAGTGGACTTTTCTGGGCCATCCCAAGGCTCCTAGTAGG
ATAATCAGTTACAGCACATCCAAAGCTTTTCTTTTAGGCAGTTCGGAACAATTCATAATCCATCC
CCGGGGCATTGATCCTTTCCTGACAAAGCCATTGGGAATTTGAGGCATTCAATTGAGCGAACTCG
TGATGCAAGTGGTAGTTCGGAGAAGAAGAATGGAAGAAAAGAGGA
Right flanking sequence: Indices 1553261 -- 1553760
AGACAAAAGAGACAAAGAAAGAAGAGAATAGTCATAATGAAGGTAGGGATTAATAAGAGGAGAAA
AGGCGTCTGAATGGACTACGGAAGTCCTGATAAAATAAACGAGAGTCAGAAAAAGAAAAGAAAAG
AAGTGTAATTGCCCGTAGGAGAAGAGCCGAAGGCTCATAGGAAGTAAAATAGTCCAAACTCTACT
GTCTCGGTCTCGGTTCCATAAATACGCTCATTTCATTAAGAACTGAAGTTAAGTTGGACAAAGAA
AGGGAAAGGTAGAATTCTAAGGGGGAAGAACATGGCCTCACCCGCACTCAGCCATACTATAGGTT
GATGGCTTGATTCTCACTTGTTAGATAGAGATGCTGGATAGATTGATAGGTTGTCGCTTTAGGGA
TAGATAGAGCAATTGTCCCTTGAAAGATAAGAGTGTGGAATAAAGGTTGTGGCTAACTAGACCTA
TGTGCTTGAGAACACGGGTTTTACACTAGGAAGTTAGCCCTATTA
Found at i:1555416 original size:24 final size:24
Alignment explanation
Indices: 1555384--1555433 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
1555374 CGACACTAAT
1555384 TAAATCAGTCACTTCGGCTGTTCC
1 TAAATCAGTCACTTCGGCTGTTCC
1555408 TAAATCAGTCACTTCGGCTGTTCC
1 TAAATCAGTCACTTCGGCTGTTCC
1555432 TA
1 TA
1555434 CGTATCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (24 bp):
TAAATCAGTCACTTCGGCTGTTCC
Left flanking sequence: Indices 1554884 -- 1555383
CGCCTAGTATTTTGCCTATGAATTGAGGAGATTAGGTCTTGCAGAGCCTTACCTTTTTGTGCTTT
GCATGGAGAGATTGGGTCAAATGATTAGCCAGAGTGTGGACTCGAAGAAGTGGAAGCCTATCAAA
GTTGGAAAGGATTGCCCGGGGTTATCCCATTTGTTCTTTGCCGATGACTTATTTCTATTCGGTCA
AGCAACGGAAAGTCAGGCTTGTACGATAAAGGAGATTCTAGATGGCTTTTGTGCAGTGTCTGGAG
CTAAAGTCAGTTTAGACAAATCAAAGCTGTTTATTTCCCCAAAGGCTAACAAAGACAATATGAGG
AAAGTAGCTGCTATCATGGACATGGCACTTACCTCCGACTTGGGCAAGTATTTAGGGGTTCCTTT
GATCCATGGTAAAGTCTCCAAAGCTACTTATATAGAAGTAGTTGAGAAAGTAAAAAGGTGAGTGG
GTGGAAGTCGAAAACGCTAAGTTTGGCCGGCCGGGCGACACTAAT
Right flanking sequence: Indices 1555434 -- 1555933
CGTATCACATGGCTACTGCCTTGCTACCGAATGGAGTGGTAAATGAGCTAGACAAGATTAATAGT
CGATTCATTAGGGTCGTCACCTTCTACCCAACTAGTGGAAGTATCCACCGTTTTCTTTGTCTGTT
AAGCCCCACAGCTATGGAACTTCCTAAAGAAAACTGCAATCGTAGTTTATCAACCACTCACAAGA
CCACCAAGATCTTCGACTTAGCCCCCAAAAGGTAATCCACCCGGCCCTTCCTCAACCTATATAAG
GGAAGCGGAAGATAACGAAAGGGAGACAAAGTCCTAATTAAATCATAACACACGTCTACATCATA
ACACAAGCTAGCCATTCCATCTATCATATCAGTCGAGTCGATCCGATTCGTTCTTATCTATAGAT
AACGCAAGAGAGAACTTATGACTTCGCGGATGGAGAGGGATTCGAACCCCCGGTATTCCTATCAA
TACTTCGGTTTTCAAGACCGACTCTTTCAACCGCTCAGACATCCA
Found at i:1565246 original size:13 final size:13
Alignment explanation
Indices: 1565228--1565253 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1565218 GTTAATCGGT
1565228 TCAGAGGTTGGTC
1 TCAGAGGTTGGTC
1565241 TCAGAGGTTGGTC
1 TCAGAGGTTGGTC
1565254 CTGGTAGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31
Consensus pattern (13 bp):
TCAGAGGTTGGTC
Left flanking sequence: Indices 1564728 -- 1565227
CTCTTCCCGCCCACTGATCAAGCAGCTCCTGTCTTTCTTGGAAGAGATGCTAGAACCTTCCTATC
TAGAGAGGGGGGAATTGGTACTGCTGCTATGCCCGCAGCTAATCCTTCGAGCCTATTTTCTAAAC
CTGAAGAGAAGGGAAATCCTTATGGAACTCGATAGATAGCTCGCTCTAGAAGGGATCCGTCTGCC
ATCACCTATCAACTTGACGAGTCACCTGAAACAGCGGCGAAAGGAGATTCAAGTTTATCGGCTAG
GATTGCAAACGAGAGTAAATGCATTGCTCGTCGCGCGGGTGCTTCTTCGGGTTTCGAGCGAGTGA
GTTATTTTGTCTTTCTAGAAGAGATTGCTGAAGAGATTGTGGTACCGAAAGCTACTTAAAGGGAT
GCAGATGATGACTTGGGAGAAGAGCTCACCTTTCTAGTTAAGTAGATCCTCACAAAGAAAGAGCA
GGTCTAAAGGCCCCTACGCTACTACTTCTCAGCTCGTTAATCGGT
Right flanking sequence: Indices 1565254 -- 1565753
CTGGTAGCACCCCTATTTCATCTAGCTTGATGGAAGAGGGATGCGCTCAATCGGTTTACCCAGTG
TCGGATAGACGCCCAGATTCTTCAGCTACTATTGCCCTTAGAGCGGATTTGACTCTTTCGGTTGG
TCTTTCCGAAGTATCATATTGCGGACCGACCCGCTAGGCTTTGCTGCTGGTATAAAGCAGCTGTG
ATCTTCCTATTTCTTTCTTGAGTGAGTAGGGAATGGAGTATTGGAATAAAGGGATTCATCTTCTG
GGAATGAGGTATATTCTTTTAGCCCACTCCCTGTTTAGATAGATAGACTCAAAGCACTTCATTAC
GGGGCTAGAACCAAATCATCGAAAAGCTGTATCGATGTATTTCCCTCTACGAGATCATGGATAAT
GTCATAAAGTGAGTCTGCTATAGCTGGAAAAGTACTCCACGAATCCCTGGCTATTCAACCGGGAA
AGATAAGTTCATCCGCTATCCAGTATCCAGATTCAGCGAAAAGGA
Found at i:1579192 original size:16 final size:16
Alignment explanation
Indices: 1579171--1579202 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1579161 AGCTCTTATA
1579171 TGATTTCTAGTAAAAT
1 TGATTTCTAGTAAAAT
1579187 TGATTTCTAGTAAAAT
1 TGATTTCTAGTAAAAT
1579203 CCAGAACCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
TGATTTCTAGTAAAAT
Left flanking sequence: Indices 1578671 -- 1579170
TGCTTACCCTATAAGCGCTGTTGGATAAGAAGACCTAAAGCAATCCTACCAAGGGAAGACAGCAC
CTTAAACAGCAATAGAGCAAGGATTCGATTAAGGAAGATGGTGAGATGTTGGGGCTAGCGACTAC
CAGATCAGCTTCTAGAACAGGTGATTCCCCGAGGTCCGCTGGAGTTGCCGTATTTAAGCTCTCCA
GGTGGCGAGCTACGTCCAAACCTGTGTGTGATGGCGGAACAGATAAGTTATGTAACAGAAATCTC
TAATCGATTTGCCTATCCCACTGAACTGCAGGAGTAAGACTACCCATTTTTCTAGCCCGGGGTTT
AGAAACCCTAGGAAGGTTAGCTGCTTTTCATAAGCGGGGTCTAAGGCTCTATCTCTTCCAATTAG
ATTGGATGAAGGAAGGGAAGTGTACACACCATCAGCTTTCGAGTTGAGAAAAGCTTTCCTAGATG
CTGACACAACGTCCCCAAGAAATCCGCTTCTAACAAGCTCTTATA
Right flanking sequence: Indices 1579203 -- 1579702
CCAGAACCGTTAAGCACAAGCAAAATACGCAGTAAGACTTTTGGAAGTATCAAAAGAATGTTACT
AACATGTATCAATAATAAGACTTATTCTTTCTTTTCTTGTCCCTCATTAAGTAAAAGCCAATTAT
CCATCCAATCTAATATTGATTGGGTGCTTGAACACTCAGAGACTTTCATCAGTCTGTATACAAAG
TATCTTCCAACCCTTCTACAACCAACCATTAATTAGGTCATTAGACACTCCCGCTATCCAATCTA
ATTCAGGACTCCGCTAGTAGACATTCCATTAGTAGTGGAGTGTCTGCCATATCAAGATTTACTGA
TTCCCTTACACTTCTCTAGTTTTTCCTTGAATCCTGGACGTAAGGATTTACAACACTTTAGAAAA
CAAAACCTCCGGAAGTTTAGAATCAAGAAAGTATCAAGAGTTGATAAAAGAAAGGGATGCCGTAT
ATGAATCACTCACATATTCTTCTGAATTATATGTATCCGCGGGAT
Found at i:1586750 original size:13 final size:13
Alignment explanation
Indices: 1586732--1586757 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1586722 CTGGTTCACT
1586732 TTCCAGATGTATA
1 TTCCAGATGTATA
1586745 TTCCAGATGTATA
1 TTCCAGATGTATA
1586758 ATAGGCATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTCCAGATGTATA
Left flanking sequence: Indices 1586232 -- 1586731
AGAATCTAGGGTTTTCCGCACCTCTGGCATTGTAACTAATGATCTTCATGGGAACAAAGGTGTTG
AATACCTCCATCTCGGAGTTCCTTGCAAGCCATGTCAACCTCTCCTCTAAAGATGGCTGCTCGTC
TAGCACCGCCTGTAGTTCTATTCGGTGCTCTGTTGTTCCTCTTTCTGGCGTTGCTGAGTACCTGG
CGGAGACTGACATGCACTGAATTTCCTCTCCTTCCGCGATTGGCACTCGGAGCGGGCTTCCCCGA
AAGGTGAGAGCTTTTGGTGCCTCCCCGTGACTCAGCGGCACCCTCATTGGTGGCGGAAGCTGATC
CGTCCAGAGCGGTAGTTCTCTGGGTACTTGATGCATCAGTCCTAACTGCATCAGCTCTTCTACAA
TCTCGGTCACCTGAAGCACATGTAACACTTCCTCCGGCTCCGGTGCAAACCCCCCTAGACCCAAC
CAGATCATCAGATTCCTTGCTGCTTCTCTGTCCAGCTGGTTCACT
Right flanking sequence: Indices 1586758 -- 1587257
ATAGGCATAGATCTCTCATCATCAAGTCCATCGGTAGGCAGTGTCGGTTCGGATATCTCACATCC
ACAATGGTTTCCGGAATTTGAATCGCCGTCACAATCGACGGAGTGAAAACGATCTCCGGCAGAGG
GGGAAGATCTTCCATTATCAAGAGCAAGGAGAGGGATAGAAGTGGGGGGAGGCAACAAAGATTTA
GGGGAAGAAGACTGCGATGAAATCATCGGGGCAGAAGACTGCAAAGAAGGGTTGGGGAGAGAAGA
GTCCTTTAAGGGTCTTTCAGCATCCAAAACGGTGCATTTTGAGTTGGTTTGGGCCTCGGATTGGG
CCATGGAGTAATTGCCTAACTCAAAAAAAAGGAGAGTCTTGGCCCAAAGCGCAGCGCAAGAAGGG
TCCGGAATAGGGCCCAAGATACTGGGAAGATCAGGGGCGGTAATCTTCGAATTTTCAAGATTTGA
TAAATTTTCCTTTTCCCTCCAAACTCGTCTGACTGCTTTTTGGCT
Found at i:1623745 original size:17 final size:17
Alignment explanation
Indices: 1623723--1623759 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
1623713 TGAATATCAA
1623723 AAGAGGTGCTCTTTCAG
1 AAGAGGTGCTCTTTCAG
1623740 AAGAGGTGCTCTTTCAG
1 AAGAGGTGCTCTTTCAG
1623757 AAG
1 AAG
1623760 TCGCGTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (17 bp):
AAGAGGTGCTCTTTCAG
Left flanking sequence: Indices 1623223 -- 1623722
AAAAGGAGAGATGGGAACGTTGTGGCTTGTCTGACTTTGGTGCTACAGGTTGCAAATTGACTTGG
AATAAAATTGTGAACAATCGAGTTCTTTTGCGAGAACGACTTGACCGAGTCTTGCTGAATGATTT
GGCCTTGCAATTCTTTGAGAATGGGAAGGTTGTGAACTTGACGTGTGTCTGATCATCATCCGGTA
CTCTTCGATTACGAATTGCTTTCTACCCCTACCTTTGATAGTCGACCTTTTAGGTTCCAGGCAGC
TTGGATCACACATGCCGAGTTTGATGAGGGTTTTCCCACTACTTGGAATTGTGGGGAAGATGTTA
TCCATGCAATTTCTAAGACAAATGAGGCCTTGAAGCAATGGAATACGCAGGGGTAGTATTTATAA
GAGAAAAAAGGAGACTTTTAGCCCGGTTGACTGGCATTCAACGGTACGAGGCTTATCTTTATTCC
TCTCATCTTCAAAAGTTGGAACAAGAGGTGATCCGTGAATATCAA
Right flanking sequence: Indices 1623760 -- 1624259
TCGCGTATTCAATGCTTTCCGGATGGGGATCGAAACACAAGGTTTTATCACCTATCCACTTTCGT
CAGGAGAAATCGGGGTAAGATTATGAGACTCCAGATTGATGGTCTTTGGGTGGATGACCAAAATC
TTATAAAACAAAATGCTCTTTTTATGCGATACTTTTTCATGATAGAAAGGTGAAAGCTCTAGTCG
ACCCTCTATTCCGTTGGAAACCGATGATTAATTTAGCTCAGCAGGAGTCATTACTTCTTCCCTTT
TCTATGGAAGAGGCTCGGGCTGACTTATTAGAGATGCAAGGATTGAAAGCCACAGGTACCGATGC
AATACAACCCTTCTTTCTACAACGGGAATGGGAAGTTGTAAATGAGAAAGTTTTATCTTTCTTAA
ACCATGCTCTTGATGACGTTTCCAAACCTGGGGAGTTGCCTAAAGCTCACATTACTCTTATTCCG
AAGAAGGAAGTTACTCTTACTATGGCTGATTTCAGGCTTATTACG
Found at i:1652207 original size:17 final size:17
Alignment explanation
Indices: 1652185--1652221 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
1652175 CTCGTACAAT
1652185 ATGCTTAACACATCTTA
1 ATGCTTAACACATCTTA
1652202 ATGCTTAACACATCTTA
1 ATGCTTAACACATCTTA
1652219 ATG
1 ATG
1652222 GAAGAAGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (17 bp):
ATGCTTAACACATCTTA
Left flanking sequence: Indices 1651685 -- 1652184
TTGAAGAGGATCGCGATGTAGCAGGGTCTGTCTGCTCCAGTCTATGACCTACCGTTTGCTAAGCA
GTATGCCTGGGATAAATAAAAAAGAAAGGTGGCATAGGTATCCCAATCAATACGACTGGACACCC
TATCGTGTGCTTAACTCATTCCGATACTGTGAGATCCTATGGTCATGGCTTAGTCCGAAGGGCTA
TAGGGCTTAGGGCATTATTAAAAAATGTGATTCTCCACATATTTGCATTTTGTCTTTACTCCCCT
TTTGCGCTATACAAGATTCATCTCTCTTTTTAAAAAAGAAAGGAGGACAGGAAAGCAGCAGCTTC
TTCTAACTCTTTCAGACAAGACGGCTTAGAACATAGCTTCCTCTCTCTCCACAAGGAGAGTAGTT
TACTGAATGCCATGCTGCTGGTACTGGTTTTAGTACTCTTTGACTGACTGACTAAAGACACTGAA
GGTGCGAAGCGAGTCTTTTTTTCCTGTGATCAAGCCTCGTACAAT
Right flanking sequence: Indices 1652222 -- 1652721
GAAGAAGTCTGGAAAGGAGGCTAGATTGGATAAAGACGCACGAGTTGATGTATGAAACCATCGGC
ACCCGAGCCTATCTAAATAGCAGTAATGAGTATTGGTCAGATAACGACTAGTCGCATATAGGTTA
TCGCACATTAGCTGTTATCTCTTGTTATCTAGGATGTCGCATATGCGCCGTTCTTTAATGGAGGG
AAAGATAGGCGGAGTTACTGGAGGATGCGATGGAGGGGTTTCAAACGCAGCACCTTTGTCATGGT
CATTGTCCAGATTAGTTGCTGTAGCTAAAATATTTTGAGTACTTCGAGCAAGAAGATCTTCTTCT
TCACCAGAGCGAGGACGTTGCGAGTCGGTCATGGCTTGGCGGCTTCAACTTCATATGCTATATAT
CGATAGAGCTAACCATTAGTGCTATTCCTTAACGGAGGTAGGGGAAGGAAAGCCAGAGATCTTGT
TTTTTATCATTCCCGTCTATACGAGCTTCTTTCGATTCGATGGCA
Found at i:1678916 original size:14 final size:14
Alignment explanation
Indices: 1678897--1678923 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1678887 ACTGTAACTG
1678897 CAATCGCTATACCA
1 CAATCGCTATACCA
1678911 CAATCGCTATACC
1 CAATCGCTATACC
1678924 TTCAATCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.37, G:0.07, T:0.22
Consensus pattern (14 bp):
CAATCGCTATACCA
Left flanking sequence: Indices 1678397 -- 1678896
GCCATACTCACTCCCTGCCCTTAACCCCCATCGGATTACTCAGAGGAGATAGCAGATTCTTCGAT
TAGTAGAACAAGTCCTAGCCCATTCGCCTTTGGAGTTGGAGTGGATTCAGCTTTCCCTTTTGCCT
GTGAAATGGCAAGCTTTCCCCTGTAGATGGAATTTCAATGGAGTCTTCGGTTTAGTCTTATCCGC
TAAGAAGTTCCGCTAGTGGTTATTCTGAAGAGTCTCCCTTTCCTGTGCGTGCTGTCTTGAGAGCT
GCTAAGGCCTGGTCTTCTTAATGGAAAGGTCTGGTAAAGCAGTTTAAGCATCTTGTTGGTTTCTG
GTAAATTGATTATCTATCTGGCTGGATCTGTTGATAGGTTTCCTTTCCTCGCACATGCGATTTAG
AACACATGCGCGTGAGGAACTGCCATCAAAGGCATCAAGTGAACAACTAGCTTTACCTTCGGAAG
ATTAAACTTCAGAGTACTTTGAAAACAATACCATCACTGTAACTG
Right flanking sequence: Indices 1678924 -- 1679423
TTCAATCATTAAGGGAAAGCTGAAGAAGAATAGACTATGTTGCCTGAGAGAGTGGACTATTTATA
TGGCACCCGATCTAATGAGGAGGTTCTTGCAGCGTCGAGCTAGGCCTTTCCTTCCATTCCAACTC
GTTAGCCAGTCTTTGAGGAAGTTTAGGATTCGCTGTGTACCCAATCTATTTCGCCTATGGGTTCT
TCGGTTGGTCCCGGAAGCACCTATAAACTATAGCTAAAGACTAGCATTCAACTCCAAGCTTCAAG
TATTACCTTTGAATCGCTTTCACGAAGCGGATCGGATCATGACTTGGATGATGTTGGTGGTTGAG
ATTGCAACCCCTTCTCTGACTCACTCATCTTCTTACCCCTTCAGTCAGACTAGAAAGGGGGCTCT
TCGGTAAGCCCCAACCGAAACAGTCAAATTAACGAGTCATTCTCAATATTCAACTTTGAAGATTT
GAGATCCCGCGGAGAAGAAAGATTACGTAAGGCTAGCGAGAACCT
Found at i:1680263 original size:15 final size:15
Alignment explanation
Indices: 1680243--1680272 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1680233 GAGATACGTT
1680243 ATCAGATGTCACTGG
1 ATCAGATGTCACTGG
1680258 ATCAGATGTCACTGG
1 ATCAGATGTCACTGG
1680273 GCCATTTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (15 bp):
ATCAGATGTCACTGG
Left flanking sequence: Indices 1679743 -- 1680242
ATTCCTTTACTCACTCTCTATTTACGACCTTTGACTCTCTTGCTTGCTAGCTAGCTGCAGTACCG
CTCTTTATACGCCCGGGTGAGGAGTTCCATAAAGCTTTACCTTACTAGTGCTTGGGGAAGTAGGG
GATTTGGAGTACAAGTAAGTAAGTTAAGCCCCTCGTTCAGAAGGATGCTACACTACCAGAAGCGC
TAAATCTTTAGTCCGACCTTGAGCTCTAACCCGAAACAAGAAAGCAGAGGCAAGGATTGGCTTAA
TGCCGAAGAAGGGGCTAGTTGCCTTTTTGGTAGTTATGAGCATTCATTCCAGGCTTAGATCAGAT
ACGAGAAAGAGTTGCCCTGAAAGTGCAGACCCTTTAAGTAGTAGATTATTGGGAAGAGATTTAAG
TACGGTACCGGAACCAGATTTACAGTCAACGAAAGGCCTAGCTCGCCACCTCTGACAAGACCTTA
GAATAGGACTCAGGTTTACTTTTATTAAGGTGGTGGAGATACGTT
Right flanking sequence: Indices 1680273 -- 1680772
GCCATTTACCGTTCGTTAACCCAGCTTGGATAGGTCTACCCTCACTCAATCCTTCCTGCTCTCCA
TCTACCCTTCCTTCTCAGCTGCCCTTCAGTTCCTTCAATAGGAATCGTCACAAGGTGAAAGCACT
CGTTTAACACTTTCTTATGTTACTCCTGGTGTAATTACATGGTGGCAAGACTACTAGTCCTTTAT
GCAATCAGATGCTGCCTCATTAACTATCGATGGCCGGCCCTATAGTTCTTTTGAATCACCATTCT
TCTTAGAAATGCGATTCTCCTAATCAGCTCACCTTCTGTTCCTTTTGTCGGGCTGGATTCGTCAG
CAGGGGATTGACTATTATATGATGTCAATTTCAATGGGAAATCTCGTAATCGATCAGCTCGGAAA
AGCCAATCTATATTAATTATTCGAAGGATGTCCAACCACTTGGATCGCTTTAAAACACTATCTCT
CTTGCTGCCACTATAGGAGCAGAGTATGGTGCCAAACGCCGCATC
Found at i:1688503 original size:20 final size:17
Alignment explanation
Indices: 1688481--1688515 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1688471 AGTAATTCTT
1688481 TATTATTTTATAATAAG
1 TATTATTTTATAATAAG
1688498 TATTATTTTATAATAAG
1 TATTATTTTATAATAAG
1688515 T
1 T
1688516 GGTGTCCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
TATTATTTTATAATAAG
Left flanking sequence: Indices 1687981 -- 1688480
GGAAGCTTACACACACATAGACAAACCAGCCAAACAACTAAACACAACAAAGAAAACCAAACAAA
GAAAAAACCATACATTAAAACACACTACTTTGCGTCTACAGACACTTATTTAATAAAAAGAGTTC
TTCTATTCTAGTCTCCCTGAGGACCGAGGGCGCGGTTTCTTATGGCCCCCTCCACAAGGAGAGAT
TGCTGTTCTTGAAGTAGGGCCCGTTTCCGGTCTTCAAGAACTCGAATGCGGTCCCGGAGCTCTTG
CATGGCTTTGGCCACGACCTCCGGATCGATAGGAGGCAAGTGCTCCCAGAACGCAGCCAGGGTTT
GCTCCCGCTGGAGCTTCTCGTTATCTATATGTAGAATTTGTTGATTTATTTGGTAAAGTCTTTCA
ACGGTAACTGGTGGATCCATCTTCCTTTGCTTTGCGAAATAGAGATTGAAAGAAGCTTCTATTTA
TAGGCGTTGGAGGCCCTTAACCCTTTCTTATTATTAGTAATTCTT
Right flanking sequence: Indices 1688516 -- 1689015
GGTGTCCTGTCTTGCTTATGACGACGGACCGGCCCCGACCCTTGTTTTTCGCGGGTATCGAAACG
TGGCTTGAGACCGATGAGAATCTGTCAGAATAGTACTCCACCACGAGCTGCCAAAGCACGCTCAG
TCAATCGTCAATCTCTAACCCAAAGCTGACCAGTACAACCATGTGTCATCCCGCGGGCTTCGTCG
TACCCCTCCTACTCATCTTTAACCGGCCTATTTGTACCCAGCTACATGATGGAAGTCCCCCCGGC
CAATCGTCACTCGACAGCTCCGTCCTTGCTTAGGAGAGCCTACTACGTGAGACCGAAGCTAGCAG
CTCTCTTGACTTGATTGATCGCTTGCTTTTTCCCCGGAAAGACGGATAAAGCCCCTTGCCAGCTC
GCTCTGTCAGTCCACTAACACCAGTATCCGGCGCGAATCCCCTCCATCACTAGTATGGTGGGGGT
GTTATTTGTATTGCAATAATGAAAAAATGTACGAACACAAATAAT
Found at i:1696632 original size:14 final size:14
Alignment explanation
Indices: 1696613--1696640 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1696603 GCGTAATACC
1696613 CGCTATATCACCAA
1 CGCTATATCACCAA
1696627 CGCTATATCACCAA
1 CGCTATATCACCAA
1696641 AAACAATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.07, T:0.21
Consensus pattern (14 bp):
CGCTATATCACCAA
Left flanking sequence: Indices 1696113 -- 1696612
TTGAGACTCTTAGTCAGATTACTAAAGACCTCATCTCAACCAAGGTATATGCCGCGTTAATCCTA
CCGTTTCATTACGAAGTGTCTTCTTTACTCTTCTCTTTCGAGTTTCTTATTCGTTTCTATGAATT
TCTTCTATTGTTTATTTAAATTTCAGTATGGGATTTGGAGTAGCTGTTGAGTGATATCCTGAAAG
AACCCCTGAAACTTACTAAGAATCTACTCCGTCCTCTTCGGAAAGAGACAAAAGAAGAGACCTTT
CCTGTTGACTATTCATCTGCATCTGCATCCCTCTCTACCCGCTGTCATGTCCCGCTACGCCAGTT
CTACAGTGCGTTTCCTTCCAGAAAGAAGGCGCTCTTTCCCTTATTCAATTCATTGTCCAATCATT
GGAGGGGCCCGCCTTGAGAATGGTACGCCTACCTCAGAGTCGATCCAGACTTGGGAAGCAAGGGT
CCATTAAGGAAGGAGTTCAACAAAAAGAAGGGTTGGCGTAATACC
Right flanking sequence: Indices 1696641 -- 1697140
AAACAATCCTCCTAAAAGACTGATTCTTAGGTAGCGTAGAATAGGACGGTCTTTTGTAGTTGTTC
CTCCTCGAATAAGACGTAAGGCAGGATGCGAAACGAAGGGGCTGGGCCATCTATCACTGTAACGA
AATATTTATATCCGAAGTATCTTGCTACTTGTTGTGCTCTAGCCGCGGCCTTTAGCTCTGCCTTA
CTGCGTACTTCCTATAGTGGATCCAACTTAAGTTCAAAACCCTGTCATACCTATGACCATTCACT
TCATTTTGATATTCAATCAAGTTAACACAACTTGTCTCTAATTGGCATTTCCTAATGGTGGATCA
CTTTACTAATCAAACCTGAGCTTTCCTATGCCACAACGCCTTGCCCGCGGATCGCCTACCGAGCG
AAACCGGAAAATGTTAAAAGAAAGGGGTGACCACTTGCTTCAGTGAGAGGATGAAAGGGACACAG
ACCTAGCCCCAAGGTTTTGAGCTCTAGGGTGGCCCACACATCCTA
Found at i:1756630 original size:13 final size:13
Alignment explanation
Indices: 1756612--1756660 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
1756602 TTTCCATACC
1756612 ATAGAAGAATGAT
1 ATAGAAGAATGAT
* *
1756625 ATAGAAGAAAGACG
1 ATAGAAGAATGA-T
*
1756639 GTAGAAGAATGAT
1 ATAGAAGAATGAT
1756652 ATAGAAGAA
1 ATAGAAGAA
1756661 AGACGGTCGG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 19 0.66
14 10 0.34
ACGTcount: A:0.55, C:0.02, G:0.27, T:0.16
Consensus pattern (13 bp):
ATAGAAGAATGAT
Left flanking sequence: Indices 1756112 -- 1756611
GCTACTTCACTCGAGAAGAAGAAAGAAGCTCGAGCTCATCTCTTGCCAAGCTAGCTCCGATGCTA
CTGCTCCGCTCTGATACTTCAAGAAAATTCATTTCTTTATTCACTGGCCATCCTCTTGCTGGTGG
GCCTTGCTGCTTGGCTGCTTTGCCCGGTGCAAGCTCTGAAAGCTGAGGTCTCTGTACCGGTCATT
ATTGAAGGGCTCACTTATCAGGTGGCAGAGAATTTGAGAGGATTCTCGGTTCTTAGTAAGATTCT
TGAAAAAGATTCTGCTAATAGCTACTGATGGTCTAACCAAAGAGACTTGTCTCGCAGTCTACCCC
AGACAAGTCAGAACTTTAGGCAAAAGGTGGGAGTGGCTATTTCTCGCTTTGTATCTGAAGCAGTG
TGCGTCTTGTCTAATGACGGCGTATGGAGGCGATAAAAAAGCTCCAGACTTCTTGCCTGTACCGG
TCTCCCTCACTAGGTCCGGCTATCCTCGGATCGTCTTTCCATACC
Right flanking sequence: Indices 1756661 -- 1757160
AGACGGTCGGGCGGTTCAGATTGACCTTTCGTTCTCTTCCTGTATTAAACTAGCCAAGAAGGTAA
CTAAGGGTACTTTTGATGATATGATCCGTCTTTGGGATGATCCTGAGGCTCTCTCAAGTGGGATC
TATCTTTTGTCCCTTGAAGACTTGACTCTTGAGATATATGCCTTGGATTACCACCATTCCCTTTT
ACCAGGGGATGACGTGGTCTCCAACCTGGAAGGCGCTGCCAACTTAGAAGTTGAGAAATTGACCC
TGGTGGAATAAGGCTAGGACCATTAGGTCTTGTTTTACTTCACACAAGTCTCCTCCCGACTAAAA
AAGGGGATGGACATAGACAGGCTTCGAAAGCTAATCGAAAGTATTGCACCTCACTAAAAAAGGCT
ACTACGGGAATTAGGCAAAGCCCTCTATCTTACCTCCCTTCTTCTTCTACTTCTCGGTCCGGAGG
GACTTAGTAAAAGACTAGGGAAATGGAACTTAGACCTGGGTGGGG
Found at i:1756645 original size:14 final size:14
Alignment explanation
Indices: 1756626--1756667 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
1756616 AAGAATGATA
1756626 TAGAAGAAAGACGG
1 TAGAAGAAAGACGG
* **
1756640 TAGAAGAATGA-TA
1 TAGAAGAAAGACGG
1756653 TAGAAGAAAGACGG
1 TAGAAGAAAGACGG
1756667 T
1 T
1756668 CGGGCGGTTC
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.50, C:0.05, G:0.31, T:0.14
Consensus pattern (14 bp):
TAGAAGAAAGACGG
Left flanking sequence: Indices 1756126 -- 1756625
GAAGAAGAAAGAAGCTCGAGCTCATCTCTTGCCAAGCTAGCTCCGATGCTACTGCTCCGCTCTGA
TACTTCAAGAAAATTCATTTCTTTATTCACTGGCCATCCTCTTGCTGGTGGGCCTTGCTGCTTGG
CTGCTTTGCCCGGTGCAAGCTCTGAAAGCTGAGGTCTCTGTACCGGTCATTATTGAAGGGCTCAC
TTATCAGGTGGCAGAGAATTTGAGAGGATTCTCGGTTCTTAGTAAGATTCTTGAAAAAGATTCTG
CTAATAGCTACTGATGGTCTAACCAAAGAGACTTGTCTCGCAGTCTACCCCAGACAAGTCAGAAC
TTTAGGCAAAAGGTGGGAGTGGCTATTTCTCGCTTTGTATCTGAAGCAGTGTGCGTCTTGTCTAA
TGACGGCGTATGGAGGCGATAAAAAAGCTCCAGACTTCTTGCCTGTACCGGTCTCCCTCACTAGG
TCCGGCTATCCTCGGATCGTCTTTCCATACCATAGAAGAATGATA
Right flanking sequence: Indices 1756668 -- 1757167
CGGGCGGTTCAGATTGACCTTTCGTTCTCTTCCTGTATTAAACTAGCCAAGAAGGTAACTAAGGG
TACTTTTGATGATATGATCCGTCTTTGGGATGATCCTGAGGCTCTCTCAAGTGGGATCTATCTTT
TGTCCCTTGAAGACTTGACTCTTGAGATATATGCCTTGGATTACCACCATTCCCTTTTACCAGGG
GATGACGTGGTCTCCAACCTGGAAGGCGCTGCCAACTTAGAAGTTGAGAAATTGACCCTGGTGGA
ATAAGGCTAGGACCATTAGGTCTTGTTTTACTTCACACAAGTCTCCTCCCGACTAAAAAAGGGGA
TGGACATAGACAGGCTTCGAAAGCTAATCGAAAGTATTGCACCTCACTAAAAAAGGCTACTACGG
GAATTAGGCAAAGCCCTCTATCTTACCTCCCTTCTTCTTCTACTTCTCGGTCCGGAGGGACTTAG
TAAAAGACTAGGGAAATGGAACTTAGACCTGGGTGGGGAACCATA
Found at i:1756651 original size:27 final size:27
Alignment explanation
Indices: 1756613--1756667 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
1756603 TTCCATACCA
1756613 TAGAAGAATGATATAGAAGAAAGACGG
1 TAGAAGAATGATATAGAAGAAAGACGG
1756640 TAGAAGAATGATATAGAAGAAAGACGG
1 TAGAAGAATGATATAGAAGAAAGACGG
1756667 T
1 T
1756668 CGGGCGGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.51, C:0.04, G:0.29, T:0.16
Consensus pattern (27 bp):
TAGAAGAATGATATAGAAGAAAGACGG
Left flanking sequence: Indices 1756113 -- 1756612
CTACTTCACTCGAGAAGAAGAAAGAAGCTCGAGCTCATCTCTTGCCAAGCTAGCTCCGATGCTAC
TGCTCCGCTCTGATACTTCAAGAAAATTCATTTCTTTATTCACTGGCCATCCTCTTGCTGGTGGG
CCTTGCTGCTTGGCTGCTTTGCCCGGTGCAAGCTCTGAAAGCTGAGGTCTCTGTACCGGTCATTA
TTGAAGGGCTCACTTATCAGGTGGCAGAGAATTTGAGAGGATTCTCGGTTCTTAGTAAGATTCTT
GAAAAAGATTCTGCTAATAGCTACTGATGGTCTAACCAAAGAGACTTGTCTCGCAGTCTACCCCA
GACAAGTCAGAACTTTAGGCAAAAGGTGGGAGTGGCTATTTCTCGCTTTGTATCTGAAGCAGTGT
GCGTCTTGTCTAATGACGGCGTATGGAGGCGATAAAAAAGCTCCAGACTTCTTGCCTGTACCGGT
CTCCCTCACTAGGTCCGGCTATCCTCGGATCGTCTTTCCATACCA
Right flanking sequence: Indices 1756668 -- 1757167
CGGGCGGTTCAGATTGACCTTTCGTTCTCTTCCTGTATTAAACTAGCCAAGAAGGTAACTAAGGG
TACTTTTGATGATATGATCCGTCTTTGGGATGATCCTGAGGCTCTCTCAAGTGGGATCTATCTTT
TGTCCCTTGAAGACTTGACTCTTGAGATATATGCCTTGGATTACCACCATTCCCTTTTACCAGGG
GATGACGTGGTCTCCAACCTGGAAGGCGCTGCCAACTTAGAAGTTGAGAAATTGACCCTGGTGGA
ATAAGGCTAGGACCATTAGGTCTTGTTTTACTTCACACAAGTCTCCTCCCGACTAAAAAAGGGGA
TGGACATAGACAGGCTTCGAAAGCTAATCGAAAGTATTGCACCTCACTAAAAAAGGCTACTACGG
GAATTAGGCAAAGCCCTCTATCTTACCTCCCTTCTTCTTCTACTTCTCGGTCCGGAGGGACTTAG
TAAAAGACTAGGGAAATGGAACTTAGACCTGGGTGGGGAACCATA
Found at i:1769221 original size:13 final size:13
Alignment explanation
Indices: 1769203--1769228 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1769193 AGCATTGCTC
1769203 GAAGTTACTTTAT
1 GAAGTTACTTTAT
1769216 GAAGTTACTTTAT
1 GAAGTTACTTTAT
1769229 AAAGATTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GAAGTTACTTTAT
Left flanking sequence: Indices 1768703 -- 1769202
CCTGTAGCAAATATGAAGGCTAGCAAGAGATTCCCCATACCTCATCCCCAATCCATCAGAAATGC
AAAATTAGGTAGGCTAATCCGGTTTTCAAGCACCCTCGAATGACATACCATTAGACCAGACAAGG
AAAAGGGAGTAAAAAAACCTGTGTAGACATACAATCGGGTTAGGCAATCAGGCTAGAAACTGTGA
GACCCATTACTAGATAAAGGAGAAAGCGAGAATGCATTGGATTCTAAGGCTTCAACAAGAGATAC
ACTTGAACTATTCAAAGACGGAAAGTTGCTTGTATGATTTGGCTTTGGTCTTTGCTTTTGCTATG
CTTGTTATTCTTCTTTGCTTGCTTCCTATATCGAAAGCGAAAGCACTTTAACGAGAGAACTCCCA
TCCCTTATTCTCTTGACTGGACTTGCAACTTAAAAAGATGAAATAGAGGTATTCTCCCACCGCAC
TCCATTACGGGGCATGCAATGTCTTCCCTTGCTTTAGCATTGCTC
Right flanking sequence: Indices 1769229 -- 1769728
AAAGATTGGCCAAGACCTTGATTAAGGATTGACTGGCTGGCATGCTTTGAAGCAGGTTAGGGTTG
GCGCATATCGGTTGTGGATCTAATCAGCTCCATCAGACCGCCCGCCTTTTGTCGTTCGGATCCCC
CTCCTCTGCCGACTCAGGAGCAGGCAAATTGAGATCCAAACGCGGTCGAATCGACTTTCTATACG
AAAATTTTCGACCTTTTTCGGAAGACTGAAGACCAATCTCGATGAAAAGAGAGGATTCGGGTTGA
TACGAGACCTTCGCCCTCTTCAAGTCTTCTTTTTTGGGGATTAGGTTAAGATAGGGGTACGGAAA
GAGAGGTCTTGCCAGAGCCTTGGTAAACAAAAACCTACATAGCAGTTCCAATGCTACGCCTTGAA
CCACTCGGCCATCTCTCCTATATAATCTTATGATTATGACCCAAAAACCTCAAGTGAATAGCAAG
TCATTCATATTCTTGCAGTAAAGGTACGCCCGCCCAATCCATTAG
Found at i:1792445 original size:16 final size:17
Alignment explanation
Indices: 1792424--1792461 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
1792414 TCTGCCTCCG
1792424 AGCTC-TTGTCTCGTCT
1 AGCTCATTGTCTCGTCT
1792440 AGCTCTATTGTCTCGTCT
1 AGCTC-ATTGTCTCGTCT
1792458 AGCT
1 AGCT
1792462 TATAGTAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.25
18 15 0.75
ACGTcount: A:0.11, C:0.29, G:0.18, T:0.42
Consensus pattern (17 bp):
AGCTCATTGTCTCGTCT
Left flanking sequence: Indices 1791924 -- 1792423
CATGTAATGAGCGTGAAGACAGAGTACTGAAAGACCACAAAAGGGCATCGCGCCTGACCTCAACT
AAAAGCCCTGGTCTGGTTTCTCCTCAATCACCAGTGGCTTGCTTCGTATTCGGTATTTTTCAAGG
GTTCTGTGAAATAGACCTTCATTGTGAGTGCTTTCATTCGAAGAGCTTGCTATTGGAGTAATTCA
TGACGGTATCGGGCAGGAACAACCTCTTCTTCCTGAATACCCAGATAGATTCTATTTAGAAATCG
ATAGAATCCGAACTGATTAACAGGCATATTACTTCTGAACTCAGTTGAGAAGGTGGTGAAAGCCC
TTCTTCTACAATATTAAAGGCTCAGAAGGTGAGTACATTTCCCGATGTCGAAGAGATTCACCAAG
ATAAAGTCCTCCTCTGTTGTGCCTTCTCTTTAAGACGTCTCTGCGAGGCTTTTTGGCGTTGCTTA
TACAAATGTTTTTCGATCGAAAGCCAATTCAAGTATCTGCCTCCG
Right flanking sequence: Indices 1792462 -- 1792961
TATAGTAGGGCTTCAGCTTGTTAGCAGCAAGGCAGCAATTTCATCGAATAGTCGAAATAGTCTCA
TAAGGAGGACTTGTAATAGTCGAGTATCATAAAAGGGTCCTGTAGCCATTGATAGAAAGAAGTGG
TCTTCCGGGCCAATGTCGGTATTAATACCGCGATGAGCTACGGCCCAATGATCGGCAAACAATCA
GCATGGAACCTGACTAACTTGACTTCCAGATGAGACGTATACACATTCCGGTATTGCTTCTACCA
GTATATTATATAAGCAATTCATCCACATATATGAGAATGAGATTTAGAAACTGAGAGTTGAAGTT
CAATTAGAACTGATGAATCAGTTGTGGAATAGGTTCCTAAAAAGGTATTCATGTCGCTAAAGGAA
TAAAGCGACGAGCACGAAGAGGACGTTCTATAGTAAAGCTTTGAGGTTTTACTGAATCTCAAAGA
GTCGTCCAAGCTAAAGCAACAAGGCTAAATGCCTTAACAGCTGCG
Found at i:1817511 original size:13 final size:13
Alignment explanation
Indices: 1817493--1817525 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
1817483 ATTGGCGGGA
1817493 ATCGTCTGCGCAC
1 ATCGTCTGCGCAC
*
1817506 ATCGTCTGCGCAG
1 ATCGTCTGCGCAC
1817519 ATCGTCT
1 ATCGTCT
1817526 TCCTGTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.33, G:0.24, T:0.27
Consensus pattern (13 bp):
ATCGTCTGCGCAC
Left flanking sequence: Indices 1816993 -- 1817492
ATCGGCGGGAAAGGAAAGGCCTAGCTCGATGCTTCATGCTTAACCCCTACTCATCCATCAGCCTC
TTTGCCTGTAGGTCTTTCACCTATTCGCCTTAGCAGCAGTGCCATAGCTCGATCGTGTCTATGTG
TATGATGTGCGCGCATTCTAAGGTCACGAGGCTAGGGATTAGTTTTATCCGGGCTAAGCCCCTTT
TACCCTACCAATAGCTCTCTAGCAGGCTCTTAGTCAGAAGATATCCTTGCCCTAAAGGAAAGGCT
CCAGCAGGCAGCTTCGGGTTTCTACTTAATAGAAGCACTAAAAATACTTAAGCCATAACCAATAA
GATAAGACCAACAACAGGTGGAGAGTTGAAAAGAGGCTTTTATTTACTACTAGAATAATGGGATA
TCAAATAGCTTCCGTTTGCGGTTACGATTCCCACGTCCTAAACCATACACGATAGGGGGCAGCGG
ACTTATCCCCAAAGGAAAAGGAAGGAGTAAGGTCGATTGGCGGGA
Right flanking sequence: Indices 1817526 -- 1818025
TCCTGTTTGAGGATTGGTGGCAGATACTACGGGATCAGGTAGACAGTTTCTATGGGGTGTAGGCC
CACTGTAAAAGCGAAGCGAATGAAAGCCCTCCGAAGGAGGGAGTGATTCATAGGTATGTGAACGG
TTGTGGAAAGGTGGCTCGCGGCATGCTTTTCAAAGAGCACAAGGTAGGGTGATGCGACTATATTT
CCTTCGTCCCCCGGTCCGATGCTAGATTGGGCAACAGTAGGGAAGACGTAGGATTGATTCCTAGT
CAGTCCTTAAGAGAAGCACTTCCTAATACCGTTACTAAACCAAGGGAAAACCCAGATAAAAGGGA
TTCAGCGGAACTCCTTGCTTCAGACTTTTTATTTATGGGATAAGTGCAGGTCGGGATCGATGCTT
TCTTTGGCTCCGGTCCCATCAACAACTAAACCCCCTACACCAACTCCAGGGCTAGAAGCAGATGA
AAGCGGACTCTTTATTCGATCGGGTTAGGTAGAATCCAGACCGTC
Found at i:1840332 original size:13 final size:13
Alignment explanation
Indices: 1840314--1840339 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1840304 CTCAATCCCT
1840314 TAACTCGATTGAG
1 TAACTCGATTGAG
1840327 TAACTCGATTGAG
1 TAACTCGATTGAG
1840340 AGATAGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TAACTCGATTGAG
Left flanking sequence: Indices 1839814 -- 1840313
AGGGCAGTCTATATTCCTGATGTTCGAGATAAAAATGATTCCAGCTTTTGGGGCTTGACTTCGAA
TGGTTCCTACTGTGGGTACAATTCTTCTACGCTTAGAACTTCCTGCATCAGCCTCAAAGCCTCTC
GGTTCACCAGAATCCTATCGACCGTATAAGCACTTTACTTTCGCTTAGCCAAACTACCAATTCCC
GTTAGCAACTGGACCCCTATCCGCCCATACACAACAACAACTACCTTTATTCCACACTCTTTTTG
TCTATCTAAGTTTCCTTGCCTATTCAAGAATAGGTAGGAGTTGTACCGGAAGAACCAATCTTATC
GAACTCGCTAGCCGTAACCGCTCTTCCAGAACCTTTGCTATCTTCATGAACGGGCTCGGCATTTC
TTATGTATTTTCTTGTCCAACTAATTAGTCTTCAACCGAAGAGGGATCCAAGAATGAATCCCAAT
CTAATACTGAATTTCCTGCCCGAAGCAAGAAATAGCTCAATCCCT
Right flanking sequence: Indices 1840340 -- 1840839
AGATAGAACTACTCTACTCACGAGAATCAGTCTTTCAGCCAGACAGGTTAGTTGCCTCATGAAAG
TAAGTTCGTTCAGGAAAGACTAAAACCTCAAACCTGACAGATGCAGATGAATTTTATTGGTAAGC
TTTAGAGTTGGCTTTTCATTTCATCCCCTCAAGTGCCACATCTATCAAAGGGAAGAGCTCCTTCG
AAAGCTGCTTCTCTCTCAACTCCATACCCGAAAGCGGATGAGAGGGATGCAGATTCTAATAGCGT
AGAAGAAAGAGGACGAATGGTTCGCTGATAAGCTTATGTTGGGCATATGGATTCGACTAGCATTC
ACGTAGGTAGCATTTGAATGAAATCTGTAAGTAAGTGTCCAAGAATCATCGATTTTGGGGTTACC
AGCTCAAGTAATGGGAATTTCTTTAAGTAAGAACGATCCCCAGTGTCATCCTCCAATTTAGCTAT
GTTCGGGAGAAAACTTGCTATTGACGAAGTTCTTATTGGACTCGC
Found at i:1847521 original size:11 final size:11
Alignment explanation
Indices: 1847505--1847545 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
1847495 ATGTCTTATA
1847505 TATATTAAGAT
1 TATATTAAGAT
1847516 TATATTAA-AT
1 TATATTAAGAT
1847526 ATATATTAAGAT
1 -TATATTAAGAT
1847538 TATATTAA
1 TATATTAA
1847546 AAATGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.07
11 24 0.86
12 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (11 bp):
TATATTAAGAT
Left flanking sequence: Indices 1847005 -- 1847504
CAATCCCTAAAACGGACTATGTAATGTACTTTATCCGCTGGGTTACGGGGGGCATTTTACCAGAG
GTTTATATTGTATCAATCTACCCTTGTGTGCTTGTGTGTGTGATTCCTGTTGAAGCATATACTCG
GGGGTGGGTGCAGGGCGAACGATTTCAAAGCGGACTTCCTATTCATTAGATAGAGAAGATCACCA
AGATCTCGTGATCCGCTTCCGAACTTATTCCAATTTAACGAGCATTCTCAATATTATGCCTTGAA
GAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCA
CCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGTATGGAA
TATATGACAAAGGTGGAGTGTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGAGTCG
GACATCCAATTGCTTCGATTTGAAGTATCCGGAGGATGTCTTATA
Right flanking sequence: Indices 1847546 -- 1848045
AAATGAAAAAGATGGACAATCAAACCTATTTCTTTCTCGATTCAATAGAAGAAAAAAAGAAAAGA
GGTGAATAGGGTCCCAAATAACGAGAGATATGTAAAAAGAAGGCCCGATTACGCCCATTCCTAAT
CCTAAATGGAATGTAACGACGTAGGGATCCATATGTAAACATAGTATCTGTTTAGATACGCTCGA
ATGACCCCTTCTCATAATGAGAATGTATATAGCCCTATTCCGGTCTGGTCCGGTATGGAATGAAC
TTATAATCATGGAATCGACTCGATTCCATGATTATAAGTGAATAACCCTAGCCCATTCCCATTTT
GGGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAAGAGGGACCTTGAACTAAGAAATA
GATTCTAGAAGCTAACTATAAGCTAAACTAAAAAAGGGTATCCTGAGCAATTGCAATAATCGGGT
TCATTGATATTCCTGGTACAGTAGATGCTATCACACATACAATCA
Found at i:1847530 original size:22 final size:22
Alignment explanation
Indices: 1847502--1847546 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
1847492 AGGATGTCTT
1847502 ATATATATTAAGATTATATTAA
1 ATATATATTAAGATTATATTAA
1847524 ATATATATTAAGATTATATTAA
1 ATATATATTAAGATTATATTAA
1847546 A
1 A
1847547 AATGAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
ATATATATTAAGATTATATTAA
Left flanking sequence: Indices 1847002 -- 1847501
CGCCAATCCCTAAAACGGACTATGTAATGTACTTTATCCGCTGGGTTACGGGGGGCATTTTACCA
GAGGTTTATATTGTATCAATCTACCCTTGTGTGCTTGTGTGTGTGATTCCTGTTGAAGCATATAC
TCGGGGGTGGGTGCAGGGCGAACGATTTCAAAGCGGACTTCCTATTCATTAGATAGAGAAGATCA
CCAAGATCTCGTGATCCGCTTCCGAACTTATTCCAATTTAACGAGCATTCTCAATATTATGCCTT
GAAGAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCA
CCACCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGTATG
GAATATATGACAAAGGTGGAGTGTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGAG
TCGGACATCCAATTGCTTCGATTTGAAGTATCCGGAGGATGTCTT
Right flanking sequence: Indices 1847547 -- 1848046
AATGAAAAAGATGGACAATCAAACCTATTTCTTTCTCGATTCAATAGAAGAAAAAAAGAAAAGAG
GTGAATAGGGTCCCAAATAACGAGAGATATGTAAAAAGAAGGCCCGATTACGCCCATTCCTAATC
CTAAATGGAATGTAACGACGTAGGGATCCATATGTAAACATAGTATCTGTTTAGATACGCTCGAA
TGACCCCTTCTCATAATGAGAATGTATATAGCCCTATTCCGGTCTGGTCCGGTATGGAATGAACT
TATAATCATGGAATCGACTCGATTCCATGATTATAAGTGAATAACCCTAGCCCATTCCCATTTTG
GGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAAGAGGGACCTTGAACTAAGAAATAG
ATTCTAGAAGCTAACTATAAGCTAAACTAAAAAAGGGTATCCTGAGCAATTGCAATAATCGGGTT
CATTGATATTCCTGGTACAGTAGATGCTATCACACATACAATCAT
Found at i:1856493 original size:16 final size:15
Alignment explanation
Indices: 1856472--1856501 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1856462 GGGAATCAAT
1856472 ACCGCTAGCAAGACAC
1 ACCGCTAGC-AGACAC
1856488 ACCGCTAGCAGACA
1 ACCGCTAGCAGACA
1856502 ATCAAAGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.37, G:0.20, T:0.07
Consensus pattern (15 bp):
ACCGCTAGCAGACAC
Left flanking sequence: Indices 1855972 -- 1856471
TCAATCCCGAGCGTATAGGGCGGTGGCGAGTCGGGTAGGGAGTGAGCTATAATGGAACACGATCG
ATTAACGAAGCAGAAGAGTGAAATCCATTCCTTTCGCTTAGCAGAACCTTTTACCTATGAGCGTT
CGTGTGCCATTCGTATCGTAGCTCATTAGCTTGCTTCAGGACCGGAACCATACCTATCAGACGTG
GTAGAGATAGCCCCTCAAACAAGCTCAAGGCCGAAAAAGGAAATAGCCAATTGCAGGGTAAGGGG
TTCTGGTTTTCCGATTTAGGAATGCTGGAGCTGGAGAATAATAGGTATGCCTCTTATTAACTACC
ACTACCAACAGGAGAATCAATATAAGCCAAAGAGAGGAGAGTTCCACACACCATTGGTTCATAAT
CCGACAAATAAATCTTCATTACATCGAAAGGGAAGGGAGACAGGGATATAACCCCAAGGGCTAGA
ATAGAAAGCGGATGAACGGATTCAGCTTCCGGGTAGGGAATCAAT
Right flanking sequence: Indices 1856502 -- 1857001
ATCAAAGCCAAGCAGTAAAGCCCTAGCTCATAATCAAATGAGGAACTTCCATCATCAAAAACCAG
AAAATAACCATCAATGGTAATTCCGTGAAAACAAGCTTTCTAACCCCTAGCCTTAGCTATTGCAC
CGACTTCGTACTCTGAGCCTGTAGGCTTAACAACCTCCACTTAAACTTTTGCGTTAATTGAATAT
GGAATGAAGACCATTTACCCACATCGACATGCAGACGATTCAATGTAAACAGACGAGTCCGATAT
TATGGGATAAGGATAAAGGAGTACCAATAAAAAAAGCAGCATATTCCGCTATTAAAGCATGGAAA
AAGGTTAGGTAAGAGTGAGTAGATAGCTTCGTTGATGGAAGACAGATTACAGCTAGCCAGTTCGA
TAGATAAGGTTGGTTCCTCCGAGTCCTATTTCTTCGCCAAAGAGTCTTCTTTTTCTAAGTAGGTA
ACTCGGATAGGCGAGATGACTTATTAGCGATATGAAAAATAAATA
Found at i:1871069 original size:13 final size:13
Alignment explanation
Indices: 1871051--1871075 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1871041 TAACACTGGT
1871051 TAGTGTACCTAGA
1 TAGTGTACCTAGA
1871064 TAGTGTACCTAG
1 TAGTGTACCTAG
1871076 GTTTGAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (13 bp):
TAGTGTACCTAGA
Left flanking sequence: Indices 1870551 -- 1871050
TCAGAAGGGCCCTATAAATAACATAAGAGAGAGACTACATTGCTTTAAGTACAAAGCACAAAATA
GCCATCCCGACTTACGCCCCATCCTGAAAATCTGCTTACTTATTAAGTAAGAATAATCCTTGGTT
AGACCGTCCTGTATGACTAATTGAACCTTATTCAAGAGTCCAATTAGCATACGAGAATCTTCCAA
AATCCTCTGCCAAGTCAATGTATACTAATGAGAGATGAGAATAGCGACTTATCTGTTATCATCGT
TTATTTGATACTGGAGGTCGGCTCGCTCTTTAAAGCATGCATCTTCACTTAATATGTGAATAAAG
AAGACACACAGTGGTCGCTGACCTGTCGCGCCACTATGGTAACTAACACTTCTCACTCTCCCACA
GAACAAGGGGGAGAGACCTATATTGCTACCAGTCCCCCTTACCGTTGACTGCTCGCCCACTAGGT
CAGCAGAACTGACCATAGGATGGCACCAATGGTACTAACACTGGT
Right flanking sequence: Indices 1871076 -- 1871575
GTTTGAACTACCTAGATGCACTATGAGTATGAGGTAGTCTGTTGTATATCCGAAGACCACAACAG
GTGCCTCGAGGGATCACTAATCACCAACAAGGGAAAGAACTGAACAAACTTTCACTTCGGGTGAA
AAGGTAGACTGTCCTTGATGCGGGTCGAAGCATATGGTTGCCCGGCTGGTTAAATGAAGAGATTA
AGTCAGTGTTCATTGTTCTATTTGTGTCTAATGTTCGGCTTAGCTGAACAAGCTTAGTCGAGAGT
TGGTGTTGAGTCTACCGCACCGAAGGTTTACGTCAAGTTGAGCTTCAAGCGAACTATTGGAGTAG
ATAAGTTTCCTTTCGGGCCTATTATCTTGAAGGTTTGAGTTCGGCAGCTTGTTGTTTAGTTCCAT
TAGCCTAACAGCTACCTTTCTCAGAGATAACCAAGTCGTATTCAAATTGAAAAGCCTTCATGAAG
TCAGGCAGCTGAAGCGGACCAAGGGCTTTCAATTGAGGATCGTCA
Found at i:1896966 original size:19 final size:19
Alignment explanation
Indices: 1896942--1896978 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1896932 CCGCTGTCTT
1896942 CTTCGTAGCATCGCTACTC
1 CTTCGTAGCATCGCTACTC
* *
1896961 CTTCGTCGCTTCGCTACT
1 CTTCGTAGCATCGCTACT
1896979 TAGCAACGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.38, G:0.16, T:0.35
Consensus pattern (19 bp):
CTTCGTAGCATCGCTACTC
Left flanking sequence: Indices 1896442 -- 1896941
AATTATGGTTGCCACTGTTGACTTGATCAATGCGACTAGAAAGCGAGTTATCGGACTCTTTCTTG
GTTAGGTCTTGAGGTATTGGATTTCTTTCTTTTTGTATCTCACGCGAATTCAAGAGACAAAACCC
CTCTGATCAATCTAGGGGAGAGAGTGGGCTATAGGCAATAGCACACGACCGGATAATGTAAGCAA
TAGAGCCTTTGAAACCTATGCTCTAAAGCAAGCATTTGAGCAACGAGCTATAGGTACTCCTTCCC
TTCCTTAAGTGCCGGAAGAACACTTGAAGAAGTGAACATCATCGTCCAAGCGGAGAAGTTATGTG
AAACATGACTCGAGGAGTCCAACTCCGATGTTAACTTAGCACAAAGCCCGGTCTTTTTGGTATCC
AGTCAAATTCCTTTAATAGAATTCATTCTAAACTAAATCGTTAAACAAGCTTTTGCTGTTATATA
AGATGCACGATTTCAATATCAATAAGGCAATTCATCCGCTGTCTT
Right flanking sequence: Indices 1896979 -- 1897478
TAGCAACGCAACACCTTTAAGTATTTATTTTTATTAGTTGTTCTTCTTTAACTAACTCTTTTATG
AGTATCGATTCGAGGATGGATTATGGGACTATCAACGTCCCTTCCGCGGTATGAGAGCTCTCCCA
TGGACATCTTCCAAGAGATGATTTATCCGATGATTAGGTCATTACCCAAGCCATTAAGTAGGAAT
CGAACTATGATCAACTCAGCGCTCGCATCAGCCTCTTTGCCTATTGTCTCCCCGCTAACGCGGCC
CTTGGTCGAGATTCAACAATCAATGTTGCACTTGTCAAGACTATCTATATAGCGAAAGTGCACCG
CTGTTATAAGGCACCGAGTAGTTCTTCTTAGAATAAGTTATTCTCGCCTATGTATAGGCACACCT
CTACCAATCGGAAAAGTTCTATTCGCTGCTTTTGTTGAAGAGTCAGCCTGAACATAAGCATATAG
TCCCACCCGCGGGGAAGTAAGGGGTTTTCATACATCGAGCAGTTC
Found at i:1924007 original size:29 final size:29
Alignment explanation
Indices: 1923975--1924036 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 29
1923965 CTAAAAGGAG
*
1923975 AGGGCATGATAGGGTGAGCCG-ATAGGCGA
1 AGGGCATGATAGGATGAGCCGTA-AGGCGA
1924004 AGGGCATGATAGGATGAGCCGTAAGGCGA
1 AGGGCATGATAGGATGAGCCGTAAGGCGA
1924033 AGGG
1 AGGG
1924037 GCGAGAAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 30 0.97
30 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.45, T:0.13
Consensus pattern (29 bp):
AGGGCATGATAGGATGAGCCGTAAGGCGA
Left flanking sequence: Indices 1923475 -- 1923974
CAAGTAGTCATAAGAGCTTTCCTTTCTAACTGAATGCTATCTGTTGTCGTGGTTGGTGATAGGTA
TAGATTTGAATAGCACAATATAAGGTAAAGCGATATGGATGACAATGTATCCCCGTCCGCGGGAG
AGTTAATCTTGCTAAAACAGTGAGTGAGTCATTCATTCATGGGTATGGGTGAACTAACCCTAGAG
TCGTCAGCTGAGGTTTGATTTTCTCTTCCAACTAACTCGTCTGAAGAGCTTGTTTGAGGGGCTGT
GATTCCATTATCTTTTGTTGTTGATGGGATACTAATGCCCTACTTCCTTCCCGAAGCAAGAAAAG
AGTCCGATGACGAGACGGATCTTCTGCCTGCCAATGGTTTGCATCTTTCTGATTATTCTACTAGA
TTCATTGATTCGAAAGAATTTGCTTAAGAACTTGTTCCTCACTGATTCTCAAGCTAAATCCTTTA
GAAAGACGTAAGGCTCAGGGCACGAAGTGACTCGACTAAAAGGAG
Right flanking sequence: Indices 1924037 -- 1924536
GCGAGAAGAAGTTGTTTAATCGAATCCTTAGTTTCTTGGAAAACCTGGGGAATATCATTGAAAGC
CTTGGGTTTTAAGGATCTTTCTCTTCCTTGTTGACTTGCTTTTTCAACCGTAGACTACTCGGATC
CTGATTAATGTTGAGTCTTCCTCGTGGCATCACTACAAAGCTCCTACTCCTAAGCTACCCCGGGC
AGGAAATGAAGATGGTGACTCACCTTCTCAACCAGATGAAAGAGATGCAGATGAAACGAATTCTA
TGGCAAAACTTCCTTGCCGAAACCCCTTGTTCTCAAGCCTATAGGTATGTCGAGCCACAACCCTC
ACACGAGGACCAATCCATCCATCGGAATCTCTCAATCTATCTATCAAGTGAGAATTCCTATCTAA
AGGTCTCATCAAAAGCAAACCACGCAAACCCAGCTCCAGAACCTAGAAACTTGCTAGAACCTTCA
ACAGAAGAAGAATGACTGGATTGATTAGAGAGAGAGTTAGTCGCT
Found at i:1952982 original size:13 final size:13
Alignment explanation
Indices: 1952964--1952989 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1952954 CTTTCACAAA
1952964 ATTATCAACTAAT
1 ATTATCAACTAAT
1952977 ATTATCAACTAAT
1 ATTATCAACTAAT
1952990 CATAATGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
ATTATCAACTAAT
Left flanking sequence: Indices 1952464 -- 1952963
AGCGCGCAGGGCTTTGAACCCAAATACATTACCCACAATGGAAGTAAACATGTTAGTAACAGAAC
CTTCTTCAAAAAGGTCTAAGGGGTAAGCTACATAACATATATATTGATCTTCTTCTCCAGCAACG
GGCTCGATGTGGTAGCAGCGCCCTTTGTAACGATCAAGGCTGGTAAGCCCATCGGTCCACACGGT
TGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCGGCTCCTGCTTCCTCAGGCGGAACTCCGG
GTTGAGGAGTTACTCGGAAGGCTGCCAAGATATCAGTATCTTTGACTTGATACTCAGGAGTATAA
TAAGTCAATTTATACTCTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGG
TGACATAAGTCCCTCCCTACAACTCATGAATTAAGAATTCTCGCAACAACAAGGTCTGCTCGACA
TAAATTAGGAGTTAATGAAACCTTTTCGCAGGAATCTTTCACAAA
Right flanking sequence: Indices 1952990 -- 1953489
CATAATGGTTCTTTATTAGACCATGGTATTTGATTCGCCAAATACATCATTATTCTATATTCTTT
CATATGTATGGCGCAACCCAATCATTGTTTTTTCTTTGTTTTTGAAGTTTAGAATTCCTTACTTT
ATTTTTGAATCGAAGTTCGAAATGAAATAAAAAAAAATAGAATAAATGAAAATAAATGAAATAGA
AATATTCGAAATATATAAATAATTAGAAATATAGAATTAATAATTAATATATATAATTATAAATA
GATTAAATATATAATTATAATATTAAACAGTAATATATGTTGTATATGTAAATCCTAGATGTGAA
ACTATGCGGAATTCAGTCATGAAATAAAATAAAACAAAGGGGGAATATGGGTGGAAAATAGGGGG
CTAGGTTGGACGTAAAAAAAATCGATATGCTAAAATAAAATACGAAATGAAATAAGGGCTAATGA
GAAATAAGGAATCGTAATATAGAATAGAGTTCAGGTTCGAATTCC
Found at i:1953259 original size:23 final size:23
Alignment explanation
Indices: 1953198--1953269 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
1953188 ATTCGAAATA
* *
1953198 TATAAATAATTAGAAATATAGAA-
1 TATAAATAATTA-ATATATATAAT
1953221 T-T-AATAATTAATATATATAAT
1 TATAAATAATTAATATATATAAT
1953242 TATAAATAGATTAA-ATATATAAT
1 TATAAATA-ATTAATATATATAAT
1953265 TATAA
1 TATAA
1953270 TATTAAACAG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 8 0.19
21 9 0.21
22 2 0.05
23 19 0.44
24 5 0.12
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
TATAAATAATTAATATATATAAT
Left flanking sequence: Indices 1952698 -- 1953197
TCCTGCTTCCTCAGGCGGAACTCCGGGTTGAGGAGTTACTCGGAAGGCTGCCAAGATATCAGTAT
CTTTGACTTGATACTCAGGAGTATAATAAGTCAATTTATACTCTTTAACACCAGCTTTGAATCCA
ACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAACTCATGAATTAAGAATT
CTCGCAACAACAAGGTCTGCTCGACATAAATTAGGAGTTAATGAAACCTTTTCGCAGGAATCTTT
CACAAAATTATCAACTAATATTATCAACTAATCATAATGGTTCTTTATTAGACCATGGTATTTGA
TTCGCCAAATACATCATTATTCTATATTCTTTCATATGTATGGCGCAACCCAATCATTGTTTTTT
CTTTGTTTTTGAAGTTTAGAATTCCTTACTTTATTTTTGAATCGAAGTTCGAAATGAAATAAAAA
AAAATAGAATAAATGAAAATAAATGAAATAGAAATATTCGAAATA
Right flanking sequence: Indices 1953270 -- 1953769
TATTAAACAGTAATATATGTTGTATATGTAAATCCTAGATGTGAAACTATGCGGAATTCAGTCAT
GAAATAAAATAAAACAAAGGGGGAATATGGGTGGAAAATAGGGGGCTAGGTTGGACGTAAAAAAA
ATCGATATGCTAAAATAAAATACGAAATGAAATAAGGGCTAATGAGAAATAAGGAATCGTAATAT
AGAATAGAGTTCAGGTTCGAATTCCGTAGATAATATGGACGGTATTGCCTAGAATGATAGACAAA
TGAAAAACTCTCTCAACATTATTATTTATCCACTTGGTCTTGGTATAGGTTGGTTGAACTTAAAA
ATTCCTTCATTGAATAAGATAAAGAATCCAATCAAATTCCATTCAATTGGATGGTACCAACGAAA
TCGAGTGCTAACTCCCATTTCTTATTGAATTAACCGATCAACTTGCTATCGAAGATTTATTTTTT
GTATTTTGTATTAGAATTAGATAATTTTCGAAAAAAAAATTGACA
Found at i:1957464 original size:38 final size:38
Alignment explanation
Indices: 1957413--1957489 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
1957403 GGAACGCCTT
1957413 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
1 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
1957451 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
1 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
1957489 A
1 A
1957490 AAACAAAGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.25, C:0.05, G:0.21, T:0.49
Consensus pattern (38 bp):
ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
Left flanking sequence: Indices 1956913 -- 1957412
ATATGCTTAAAACTAAAGCAAACTAAAACAATACAATTAAAGAATATTCAAATACAAATAAAAAA
AGTTGTATATTTTTTTTCCTAATTGTTGTATTCTTTGTTTTGTTGATTGGAACTGTCGCTCCCAG
TTGATTGGTTAAAATCATTCCCATAAGCTCGCTCACAGGGCAATTGCTCAGAGTATAAAACTGAA
AACAAAAGCGCATTTCAATGGATCCAATCGCTCTTTTTTTCTTGGATAAGAATGAATAAAATAAA
CAAACCCATTTTCTTAATTAATCCTCGTGGGTAGATTTATTTTATATTGATTCCATAATAAATTG
AATTTTCCTTTACGGGTCCACAATCAATTAGTGAGACTTCTTCGGTATACCCTCAATTTTTGGGA
ATCCTTGGAGTCAAAATTATGACATGAATCCGGTAAAAAAACCAACCTAATTAAACTCAACTCAA
ATCGAATCTATCTAATATTGAGTCGCACAGATCTAGGAACGCCTT
Right flanking sequence: Indices 1957490 -- 1957989
AAACAAAGATAGATCTTTTCATAAACAGAATTCATAAACATAATTTCATACATAATTTCATACAT
AATTTCATAAATTTTTATTCTATATAAATAATATAAATATATATCTATATATATAGATAGAAAAT
CAAAAATATATTCTCAAAAATATATTCTAACTATATATAAAAATATATTCTAACTATATATAATA
GAATAAATAGAATTATAGAATAAAGAATATAGAATAAATAAATAGAATATAGAAAATAGAATAAA
AATAAATTTCGAATTTGAAGATTTTTTTTATTTCTATTCTAATACATATTAGAATTCCTTTTATT
TATTATTTATTATTTAGAAAAATCCGAAGTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGTTATA
TAGTACTATACTATATAGTACTATACTATATAGTACTATATCGAAATTAAATCGAAATAAGTATA
ACGTAAATAGGATTAATTACAATCAATAAATCTTAAAACGCAACA
Found at i:1957525 original size:13 final size:14
Alignment explanation
Indices: 1957506--1957565 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 14
1957496 AGATAGATCT
1957506 TTTCATAAACAGAA
1 TTTCATAAACAGAA
*
1957520 -TTCATAAACATAA
1 TTTCATAAACAGAA
*
1957533 TTTCAT--ACATAA
1 TTTCATAAACAGAA
*
1957545 TTTCAT--ACATAA
1 TTTCATAAACAGAA
1957557 TTTCATAAA
1 TTTCATAAA
1957566 TTTTTATTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
12 24 0.57
13 12 0.29
14 6 0.14
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.37
Consensus pattern (14 bp):
TTTCATAAACAGAA
Left flanking sequence: Indices 1957006 -- 1957505
TATTCTTTGTTTTGTTGATTGGAACTGTCGCTCCCAGTTGATTGGTTAAAATCATTCCCATAAGC
TCGCTCACAGGGCAATTGCTCAGAGTATAAAACTGAAAACAAAAGCGCATTTCAATGGATCCAAT
CGCTCTTTTTTTCTTGGATAAGAATGAATAAAATAAACAAACCCATTTTCTTAATTAATCCTCGT
GGGTAGATTTATTTTATATTGATTCCATAATAAATTGAATTTTCCTTTACGGGTCCACAATCAAT
TAGTGAGACTTCTTCGGTATACCCTCAATTTTTGGGAATCCTTGGAGTCAAAATTATGACATGAA
TCCGGTAAAAAAACCAACCTAATTAAACTCAACTCAAATCGAATCTATCTAATATTGAGTCGCAC
AGATCTAGGAACGCCTTATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGAATTGTATTGT
ATGTATTTGTTGACACGTTAGATTTTGAAAAACAAAGATAGATCT
Right flanking sequence: Indices 1957566 -- 1958065
TTTTTATTCTATATAAATAATATAAATATATATCTATATATATAGATAGAAAATCAAAAATATAT
TCTCAAAAATATATTCTAACTATATATAAAAATATATTCTAACTATATATAATAGAATAAATAGA
ATTATAGAATAAAGAATATAGAATAAATAAATAGAATATAGAAAATAGAATAAAAATAAATTTCG
AATTTGAAGATTTTTTTTATTTCTATTCTAATACATATTAGAATTCCTTTTATTTATTATTTATT
ATTTAGAAAAATCCGAAGTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGTTATATAGTACTATAC
TATATAGTACTATACTATATAGTACTATATCGAAATTAAATCGAAATAAGTATAACGTAAATAGG
ATTAATTACAATCAATAAATCTTAAAACGCAACAAACATGTAAACACAGCAAACAAACGAAACTA
GACGATTCGATCAAACTGAATTGTTGGTTTGACTAAACAAACAGT
Found at i:1957544 original size:12 final size:12
Alignment explanation
Indices: 1957527--1957563 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
1957517 GAATTCATAA
1957527 ACATAATTTCAT
1 ACATAATTTCAT
1957539 ACATAATTTCAT
1 ACATAATTTCAT
1957551 ACATAATTTCAT
1 ACATAATTTCAT
1957563 A
1 A
1957564 AATTTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (12 bp):
ACATAATTTCAT
Left flanking sequence: Indices 1957027 -- 1957526
GAACTGTCGCTCCCAGTTGATTGGTTAAAATCATTCCCATAAGCTCGCTCACAGGGCAATTGCTC
AGAGTATAAAACTGAAAACAAAAGCGCATTTCAATGGATCCAATCGCTCTTTTTTTCTTGGATAA
GAATGAATAAAATAAACAAACCCATTTTCTTAATTAATCCTCGTGGGTAGATTTATTTTATATTG
ATTCCATAATAAATTGAATTTTCCTTTACGGGTCCACAATCAATTAGTGAGACTTCTTCGGTATA
CCCTCAATTTTTGGGAATCCTTGGAGTCAAAATTATGACATGAATCCGGTAAAAAAACCAACCTA
ATTAAACTCAACTCAAATCGAATCTATCTAATATTGAGTCGCACAGATCTAGGAACGCCTTATTG
TATTGTATGTATTTGTTGACACGTTAGATTTTGAATTGTATTGTATGTATTTGTTGACACGTTAG
ATTTTGAAAAACAAAGATAGATCTTTTCATAAACAGAATTCATAA
Right flanking sequence: Indices 1957564 -- 1958063
AATTTTTATTCTATATAAATAATATAAATATATATCTATATATATAGATAGAAAATCAAAAATAT
ATTCTCAAAAATATATTCTAACTATATATAAAAATATATTCTAACTATATATAATAGAATAAATA
GAATTATAGAATAAAGAATATAGAATAAATAAATAGAATATAGAAAATAGAATAAAAATAAATTT
CGAATTTGAAGATTTTTTTTATTTCTATTCTAATACATATTAGAATTCCTTTTATTTATTATTTA
TTATTTAGAAAAATCCGAAGTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGTTATATAGTACTAT
ACTATATAGTACTATACTATATAGTACTATATCGAAATTAAATCGAAATAAGTATAACGTAAATA
GGATTAATTACAATCAATAAATCTTAAAACGCAACAAACATGTAAACACAGCAAACAAACGAAAC
TAGACGATTCGATCAAACTGAATTGTTGGTTTGACTAAACAAACA
Found at i:1957638 original size:14 final size:14
Alignment explanation
Indices: 1957619--1957647 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1957609 AGATAGAAAA
1957619 TCAAAAATATATTC
1 TCAAAAATATATTC
1957633 TCAAAAATATATTC
1 TCAAAAATATATTC
1957647 T
1 T
1957648 AACTATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (14 bp):
TCAAAAATATATTC
Left flanking sequence: Indices 1957119 -- 1957618
ATTTCAATGGATCCAATCGCTCTTTTTTTCTTGGATAAGAATGAATAAAATAAACAAACCCATTT
TCTTAATTAATCCTCGTGGGTAGATTTATTTTATATTGATTCCATAATAAATTGAATTTTCCTTT
ACGGGTCCACAATCAATTAGTGAGACTTCTTCGGTATACCCTCAATTTTTGGGAATCCTTGGAGT
CAAAATTATGACATGAATCCGGTAAAAAAACCAACCTAATTAAACTCAACTCAAATCGAATCTAT
CTAATATTGAGTCGCACAGATCTAGGAACGCCTTATTGTATTGTATGTATTTGTTGACACGTTAG
ATTTTGAATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGAAAAACAAAGATAGATCTTTT
CATAAACAGAATTCATAAACATAATTTCATACATAATTTCATACATAATTTCATAAATTTTTATT
CTATATAAATAATATAAATATATATCTATATATATAGATAGAAAA
Right flanking sequence: Indices 1957648 -- 1958147
AACTATATATAAAAATATATTCTAACTATATATAATAGAATAAATAGAATTATAGAATAAAGAAT
ATAGAATAAATAAATAGAATATAGAAAATAGAATAAAAATAAATTTCGAATTTGAAGATTTTTTT
TATTTCTATTCTAATACATATTAGAATTCCTTTTATTTATTATTTATTATTTAGAAAAATCCGAA
GTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGTTATATAGTACTATACTATATAGTACTATACTA
TATAGTACTATATCGAAATTAAATCGAAATAAGTATAACGTAAATAGGATTAATTACAATCAATA
AATCTTAAAACGCAACAAACATGTAAACACAGCAAACAAACGAAACTAGACGATTCGATCAAACT
GAATTGTTGGTTTGACTAAACAAACAGTTATGGATGACTTGACAATGAATTCCAAGTCGAATCGA
CTAATCCGGTCTATTTTTAACATTCATAGGAGTTCGTCTATGTTT
Found at i:1957655 original size:25 final size:24
Alignment explanation
Indices: 1957626--1957682 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 24
1957616 AAATCAAAAA
*
1957626 TATATTCTCAAAAATATATTCTAAC
1 TATATTAT-AAAAATATATTCTAAC
1957651 TATA-TATAAAAATATATTCTAAC
1 TATATTATAAAAATATATTCTAAC
1957674 TATA-TATAA
1 TATATTATAA
1957683 TAGAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 25 0.81
24 2 0.06
25 4 0.13
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (24 bp):
TATATTATAAAAATATATTCTAAC
Left flanking sequence: Indices 1957126 -- 1957625
TGGATCCAATCGCTCTTTTTTTCTTGGATAAGAATGAATAAAATAAACAAACCCATTTTCTTAAT
TAATCCTCGTGGGTAGATTTATTTTATATTGATTCCATAATAAATTGAATTTTCCTTTACGGGTC
CACAATCAATTAGTGAGACTTCTTCGGTATACCCTCAATTTTTGGGAATCCTTGGAGTCAAAATT
ATGACATGAATCCGGTAAAAAAACCAACCTAATTAAACTCAACTCAAATCGAATCTATCTAATAT
TGAGTCGCACAGATCTAGGAACGCCTTATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGAAAAACAAAGATAGATCTTTTCATAAAC
AGAATTCATAAACATAATTTCATACATAATTTCATACATAATTTCATAAATTTTTATTCTATATA
AATAATATAAATATATATCTATATATATAGATAGAAAATCAAAAA
Right flanking sequence: Indices 1957683 -- 1958182
TAGAATAAATAGAATTATAGAATAAAGAATATAGAATAAATAAATAGAATATAGAAAATAGAATA
AAAATAAATTTCGAATTTGAAGATTTTTTTTATTTCTATTCTAATACATATTAGAATTCCTTTTA
TTTATTATTTATTATTTAGAAAAATCCGAAGTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGTTA
TATAGTACTATACTATATAGTACTATACTATATAGTACTATATCGAAATTAAATCGAAATAAGTA
TAACGTAAATAGGATTAATTACAATCAATAAATCTTAAAACGCAACAAACATGTAAACACAGCAA
ACAAACGAAACTAGACGATTCGATCAAACTGAATTGTTGGTTTGACTAAACAAACAGTTATGGAT
GACTTGACAATGAATTCCAAGTCGAATCGACTAATCCGGTCTATTTTTAACATTCATAGGAGTTC
GTCTATGTTTCTGCTTTACGAATATGATATTTTCTGGTCATTTCT
Found at i:1957662 original size:23 final size:23
Alignment explanation
Indices: 1957635--1957682 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
1957625 ATATATTCTC
1957635 AAAAATATATTCTAACTATATAT
1 AAAAATATATTCTAACTATATAT
1957658 AAAAATATATTCTAACTATATAT
1 AAAAATATATTCTAACTATATAT
1957681 AA
1 AA
1957683 TAGAATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAAATATATTCTAACTATATAT
Left flanking sequence: Indices 1957135 -- 1957634
TCGCTCTTTTTTTCTTGGATAAGAATGAATAAAATAAACAAACCCATTTTCTTAATTAATCCTCG
TGGGTAGATTTATTTTATATTGATTCCATAATAAATTGAATTTTCCTTTACGGGTCCACAATCAA
TTAGTGAGACTTCTTCGGTATACCCTCAATTTTTGGGAATCCTTGGAGTCAAAATTATGACATGA
ATCCGGTAAAAAAACCAACCTAATTAAACTCAACTCAAATCGAATCTATCTAATATTGAGTCGCA
CAGATCTAGGAACGCCTTATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGAATTGTATTG
TATGTATTTGTTGACACGTTAGATTTTGAAAAACAAAGATAGATCTTTTCATAAACAGAATTCAT
AAACATAATTTCATACATAATTTCATACATAATTTCATAAATTTTTATTCTATATAAATAATATA
AATATATATCTATATATATAGATAGAAAATCAAAAATATATTCTC
Right flanking sequence: Indices 1957683 -- 1958182
TAGAATAAATAGAATTATAGAATAAAGAATATAGAATAAATAAATAGAATATAGAAAATAGAATA
AAAATAAATTTCGAATTTGAAGATTTTTTTTATTTCTATTCTAATACATATTAGAATTCCTTTTA
TTTATTATTTATTATTTAGAAAAATCCGAAGTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGTTA
TATAGTACTATACTATATAGTACTATACTATATAGTACTATATCGAAATTAAATCGAAATAAGTA
TAACGTAAATAGGATTAATTACAATCAATAAATCTTAAAACGCAACAAACATGTAAACACAGCAA
ACAAACGAAACTAGACGATTCGATCAAACTGAATTGTTGGTTTGACTAAACAAACAGTTATGGAT
GACTTGACAATGAATTCCAAGTCGAATCGACTAATCCGGTCTATTTTTAACATTCATAGGAGTTC
GTCTATGTTTCTGCTTTACGAATATGATATTTTCTGGTCATTTCT
Found at i:1957706 original size:22 final size:23
Alignment explanation
Indices: 1957674--1957733 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
1957664 ATATTCTAAC
1957674 TATATATAATAGAATAA-ATAGAA
1 TATATA-AATAGAATAATATAGAA
*
1957697 T-TATAGAATA-AAGAATATAGAA
1 TATATA-AATAGAATAATATAGAA
*
1957719 TAAATAAATAGAATA
1 TATATAAATAGAATA
1957734 TAGAAAATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (23 bp):
TATATAAATAGAATAATATAGAA
Left flanking sequence: Indices 1957174 -- 1957673
AAACCCATTTTCTTAATTAATCCTCGTGGGTAGATTTATTTTATATTGATTCCATAATAAATTGA
ATTTTCCTTTACGGGTCCACAATCAATTAGTGAGACTTCTTCGGTATACCCTCAATTTTTGGGAA
TCCTTGGAGTCAAAATTATGACATGAATCCGGTAAAAAAACCAACCTAATTAAACTCAACTCAAA
TCGAATCTATCTAATATTGAGTCGCACAGATCTAGGAACGCCTTATTGTATTGTATGTATTTGTT
GACACGTTAGATTTTGAATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGAAAAACAAAGA
TAGATCTTTTCATAAACAGAATTCATAAACATAATTTCATACATAATTTCATACATAATTTCATA
AATTTTTATTCTATATAAATAATATAAATATATATCTATATATATAGATAGAAAATCAAAAATAT
ATTCTCAAAAATATATTCTAACTATATATAAAAATATATTCTAAC
Right flanking sequence: Indices 1957734 -- 1958233
TAGAAAATAGAATAAAAATAAATTTCGAATTTGAAGATTTTTTTTATTTCTATTCTAATACATAT
TAGAATTCCTTTTATTTATTATTTATTATTTAGAAAAATCCGAAGTGAAAAAAAAAAAGGTTTAC
TTGTTTTGCAGTTATATAGTACTATACTATATAGTACTATACTATATAGTACTATATCGAAATTA
AATCGAAATAAGTATAACGTAAATAGGATTAATTACAATCAATAAATCTTAAAACGCAACAAACA
TGTAAACACAGCAAACAAACGAAACTAGACGATTCGATCAAACTGAATTGTTGGTTTGACTAAAC
AAACAGTTATGGATGACTTGACAATGAATTCCAAGTCGAATCGACTAATCCGGTCTATTTTTAAC
ATTCATAGGAGTTCGTCTATGTTTCTGCTTTACGAATATGATATTTTCTGGTCATTTCTAATAAT
ATCAAGTGCTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTT
Found at i:1957717 original size:14 final size:14
Alignment explanation
Indices: 1957682--1957753 Score: 76
Period size: 14 Copynumber: 5.1 Consensus size: 14
1957672 ACTATATATA
1957682 ATAGAATAAATAGAATT
1 ATAGAAT-AA-AGAA-T
1957699 ATAGAATAAAGAAT
1 ATAGAATAAAGAAT
*
1957713 ATAGAATAAATAA-
1 ATAGAATAAAGAAT
* *
1957726 ATAGAATATAGAAA
1 ATAGAATAAAGAAT
1957740 ATAGAATAAA-AAT
1 ATAGAATAAAGAAT
1957753 A
1 A
1957754 AATTTCGAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
13 14 0.29
14 22 0.45
15 4 0.08
16 2 0.04
17 7 0.14
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (14 bp):
ATAGAATAAAGAAT
Left flanking sequence: Indices 1957182 -- 1957681
TTTCTTAATTAATCCTCGTGGGTAGATTTATTTTATATTGATTCCATAATAAATTGAATTTTCCT
TTACGGGTCCACAATCAATTAGTGAGACTTCTTCGGTATACCCTCAATTTTTGGGAATCCTTGGA
GTCAAAATTATGACATGAATCCGGTAAAAAAACCAACCTAATTAAACTCAACTCAAATCGAATCT
ATCTAATATTGAGTCGCACAGATCTAGGAACGCCTTATTGTATTGTATGTATTTGTTGACACGTT
AGATTTTGAATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGAAAAACAAAGATAGATCTT
TTCATAAACAGAATTCATAAACATAATTTCATACATAATTTCATACATAATTTCATAAATTTTTA
TTCTATATAAATAATATAAATATATATCTATATATATAGATAGAAAATCAAAAATATATTCTCAA
AAATATATTCTAACTATATATAAAAATATATTCTAACTATATATA
Right flanking sequence: Indices 1957754 -- 1958253
AATTTCGAATTTGAAGATTTTTTTTATTTCTATTCTAATACATATTAGAATTCCTTTTATTTATT
ATTTATTATTTAGAAAAATCCGAAGTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGTTATATAGT
ACTATACTATATAGTACTATACTATATAGTACTATATCGAAATTAAATCGAAATAAGTATAACGT
AAATAGGATTAATTACAATCAATAAATCTTAAAACGCAACAAACATGTAAACACAGCAAACAAAC
GAAACTAGACGATTCGATCAAACTGAATTGTTGGTTTGACTAAACAAACAGTTATGGATGACTTG
ACAATGAATTCCAAGTCGAATCGACTAATCCGGTCTATTTTTAACATTCATAGGAGTTCGTCTAT
GTTTCTGCTTTACGAATATGATATTTTCTGGTCATTTCTAATAATATCAAGTGCTATTCCTATTT
TGGCATTTCTAATTTCTGGAGTTTTAGCCCCGATTAGAAAGGGCC
Found at i:1957896 original size:15 final size:15
Alignment explanation
Indices: 1957876--1957919 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
1957866 GTTTTGCAGT
1957876 TATATAGTACTATAC
1 TATATAGTACTATAC
1957891 TATATAGTACTATAC
1 TATATAGTACTATAC
1957906 TATATAGTACTATA
1 TATATAGTACTATA
1957920 TCGAAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (15 bp):
TATATAGTACTATAC
Left flanking sequence: Indices 1957376 -- 1957875
TATCTAATATTGAGTCGCACAGATCTAGGAACGCCTTATTGTATTGTATGTATTTGTTGACACGT
TAGATTTTGAATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGAAAAACAAAGATAGATCT
TTTCATAAACAGAATTCATAAACATAATTTCATACATAATTTCATACATAATTTCATAAATTTTT
ATTCTATATAAATAATATAAATATATATCTATATATATAGATAGAAAATCAAAAATATATTCTCA
AAAATATATTCTAACTATATATAAAAATATATTCTAACTATATATAATAGAATAAATAGAATTAT
AGAATAAAGAATATAGAATAAATAAATAGAATATAGAAAATAGAATAAAAATAAATTTCGAATTT
GAAGATTTTTTTTATTTCTATTCTAATACATATTAGAATTCCTTTTATTTATTATTTATTATTTA
GAAAAATCCGAAGTGAAAAAAAAAAAGGTTTACTTGTTTTGCAGT
Right flanking sequence: Indices 1957920 -- 1958419
TCGAAATTAAATCGAAATAAGTATAACGTAAATAGGATTAATTACAATCAATAAATCTTAAAACG
CAACAAACATGTAAACACAGCAAACAAACGAAACTAGACGATTCGATCAAACTGAATTGTTGGTT
TGACTAAACAAACAGTTATGGATGACTTGACAATGAATTCCAAGTCGAATCGACTAATCCGGTCT
ATTTTTAACATTCATAGGAGTTCGTCTATGTTTCTGCTTTACGAATATGATATTTTCTGGTCATT
TCTAATAATATCAAGTGCTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCGATTA
GAAAGGGCCCAGAAAAACTTTCTAGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTA
CAATTTCGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTT
TCTTTATCCATGGGCAATGAGTTTCGACATATTGGGGGTATCCGT
Found at i:1992558 original size:18 final size:18
Alignment explanation
Indices: 1992535--1992585 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
1992525 AGTTCTTTTC
1992535 TTTCTATTCTATTAGTAT
1 TTTCTATTCTATTAGTAT
1992553 TTTCTATTCTA-T--T-T
1 TTTCTATTCTATTAGTAT
1992567 TTTCTATTCTATTAGTAT
1 TTTCTATTCTATTAGTAT
1992585 T
1 T
1992586 AGATTAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 12 0.41
15 2 0.07
17 2 0.07
18 13 0.45
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTCTATTCTATTAGTAT
Left flanking sequence: Indices 1992035 -- 1992534
TTTTTTTTATTTTATTCCCTTCCATCATTCCTTAAGTCCCATAGGTTTGATCCTATAGAATCTGA
CCCATTTTCTCATTGAGCGAGGGGTACGAAATAAATCAGATTGGTTTTTCGATCAAAAGCACTGT
GTGAAATCTTCGGTTTTTTCCTCTTTCTCTATCCCATAGGTACAGCATTTGAATCAATAGAGAAC
CTTTTCCTCTGTATCTATATGAATCGATATTATTACATTCCAATTCCTTACTGATACCCCCCAAG
GAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTC
TTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGAGTCTCCGAGATCCT
TTCGACGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCCCGCGG
TAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTC
Right flanking sequence: Indices 1992586 -- 1993085
AGATTAGTATTCTATTCTATTAGTATTAGATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCC
TTTCTTCCGTGATTAGCTATTGGCGCCAGTCCTAGTCCTACATTTTGTCTCTGTGGACCGAGGAG
AAAGGGGGCTCAGCGGGAAGAGGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAAT
ATACAACATGGATTCTGGCAATGCAATGTAGTTGGGCTTTCATGCCGATCCGAATGAATCATCTT
TTCCACGGAGGTAAATCCTTGCCCGCTAGGCAAGAGGATAGCAAGTTACAAATTTTGTTTCGGTA
GGACATGTATTTCTATTACTATGAAATTCATAAATGAAGTAATTAATCGTGGGGTGGGGTTACCA
TTATCCTTTTTGTAGTGACGAATCTTGTATGTGTTCCTAAGAAAAGAAAAGGAATTTGTCAAAAT
TTCGGGGTCTTAAAGGGTCGTGGAAAGACATAAGAATTCTTGAAT
Found at i:1992571 original size:14 final size:14
Alignment explanation
Indices: 1992552--1992579 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1992542 TCTATTAGTA
1992552 TTTTCTATTCTATT
1 TTTTCTATTCTATT
1992566 TTTTCTATTCTATT
1 TTTTCTATTCTATT
1992580 AGTATTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Left flanking sequence: Indices 1992052 -- 1992551
CCTTCCATCATTCCTTAAGTCCCATAGGTTTGATCCTATAGAATCTGACCCATTTTCTCATTGAG
CGAGGGGTACGAAATAAATCAGATTGGTTTTTCGATCAAAAGCACTGTGTGAAATCTTCGGTTTT
TTCCTCTTTCTCTATCCCATAGGTACAGCATTTGAATCAATAGAGAACCTTTTCCTCTGTATCTA
TATGAATCGATATTATTACATTCCAATTCCTTACTGATACCCCCCAAGGAAAATCCCGAATTGGA
TCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCAT
TTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGAGTCTCCGAGATCCTTTCGACGACCTATGTTG
TGTTGAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGG
AAAGTATACAGAAAAGACAGTTCTTTTCTTTCTATTCTATTAGTA
Right flanking sequence: Indices 1992580 -- 1993079
AGTATTAGATTAGTATTCTATTCTATTAGTATTAGATTAGTATTAGTTAGTGATCCCGGCTCAGT
GAGTCCTTTCTTCCGTGATTAGCTATTGGCGCCAGTCCTAGTCCTACATTTTGTCTCTGTGGACC
GAGGAGAAAGGGGGCTCAGCGGGAAGAGGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCTT
TCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGGCTTTCATGCCGATCCGAATGAAT
CATCTTTTCCACGGAGGTAAATCCTTGCCCGCTAGGCAAGAGGATAGCAAGTTACAAATTTTGTT
TCGGTAGGACATGTATTTCTATTACTATGAAATTCATAAATGAAGTAATTAATCGTGGGGTGGGG
TTACCATTATCCTTTTTGTAGTGACGAATCTTGTATGTGTTCCTAAGAAAAGAAAAGGAATTTGT
CAAAATTTCGGGGTCTTAAAGGGTCGTGGAAAGACATAAGAATTC
Found at i:1992591 original size:5 final size:6
Alignment explanation
Indices: 1992576--1992626 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
1992566 TTTTCTATTC
* *
1992576 TATTAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG -ATTAG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
1992620 TATTAG T
1 TATTAG T
1992627 TAGTGATCCC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
5 19 0.47
6 21 0.52
ACGTcount: A:0.31, C:0.04, G:0.14, T:0.51
Consensus pattern (6 bp):
TATTAG
Left flanking sequence: Indices 1992076 -- 1992575
TAGGTTTGATCCTATAGAATCTGACCCATTTTCTCATTGAGCGAGGGGTACGAAATAAATCAGAT
TGGTTTTTCGATCAAAAGCACTGTGTGAAATCTTCGGTTTTTTCCTCTTTCTCTATCCCATAGGT
ACAGCATTTGAATCAATAGAGAACCTTTTCCTCTGTATCTATATGAATCGATATTATTACATTCC
AATTCCTTACTGATACCCCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGA
GCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGT
GCTTTGGTGAGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTTGAAGGGATATCTATATGATC
CGATCGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCT
TTTCTTTCTATTCTATTAGTATTTTCTATTCTATTTTTTCTATTC
Right flanking sequence: Indices 1992627 -- 1993126
TAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATTAGCTATTGGCGCCAGTCCTAGTCCTAC
ATTTTGTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCGGGAAGAGGATTGTACCATGAGAGAAG
CAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGGCTTTC
ATGCCGATCCGAATGAATCATCTTTTCCACGGAGGTAAATCCTTGCCCGCTAGGCAAGAGGATAG
CAAGTTACAAATTTTGTTTCGGTAGGACATGTATTTCTATTACTATGAAATTCATAAATGAAGTA
ATTAATCGTGGGGTGGGGTTACCATTATCCTTTTTGTAGTGACGAATCTTGTATGTGTTCCTAAG
AAAAGAAAAGGAATTTGTCAAAATTTCGGGGTCTTAAAGGGTCGTGGAAAGACATAAGAATTCTT
GAATGGAACTGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATG
Found at i:1992591 original size:11 final size:12
Alignment explanation
Indices: 1992576--1992626 Score: 56
Period size: 11 Copynumber: 4.6 Consensus size: 12
1992566 TTTTCTATTC
1992576 TATTAGTATTAG
1 TATTAGTATTAG
*
1992588 -ATTAGTATT-C
1 TATTAGTATTAG
*
1992598 TATT-CTATTAG
1 TATTAGTATTAG
1992609 TATTAG-ATTAG
1 TATTAGTATTAG
1992620 TATTAGT
1 TATTAGT
1992627 TAGTGATCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
10 4 0.13
11 27 0.87
ACGTcount: A:0.31, C:0.04, G:0.14, T:0.51
Consensus pattern (12 bp):
TATTAGTATTAG
Left flanking sequence: Indices 1992076 -- 1992575
TAGGTTTGATCCTATAGAATCTGACCCATTTTCTCATTGAGCGAGGGGTACGAAATAAATCAGAT
TGGTTTTTCGATCAAAAGCACTGTGTGAAATCTTCGGTTTTTTCCTCTTTCTCTATCCCATAGGT
ACAGCATTTGAATCAATAGAGAACCTTTTCCTCTGTATCTATATGAATCGATATTATTACATTCC
AATTCCTTACTGATACCCCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGA
GCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGT
GCTTTGGTGAGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTTGAAGGGATATCTATATGATC
CGATCGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCT
TTTCTTTCTATTCTATTAGTATTTTCTATTCTATTTTTTCTATTC
Right flanking sequence: Indices 1992627 -- 1993126
TAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATTAGCTATTGGCGCCAGTCCTAGTCCTAC
ATTTTGTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCGGGAAGAGGATTGTACCATGAGAGAAG
CAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGGCTTTC
ATGCCGATCCGAATGAATCATCTTTTCCACGGAGGTAAATCCTTGCCCGCTAGGCAAGAGGATAG
CAAGTTACAAATTTTGTTTCGGTAGGACATGTATTTCTATTACTATGAAATTCATAAATGAAGTA
ATTAATCGTGGGGTGGGGTTACCATTATCCTTTTTGTAGTGACGAATCTTGTATGTGTTCCTAAG
AAAAGAAAAGGAATTTGTCAAAATTTCGGGGTCTTAAAGGGTCGTGGAAAGACATAAGAATTCTT
GAATGGAACTGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATG
Found at i:1992598 original size:27 final size:27
Alignment explanation
Indices: 1992568--1992623 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
1992558 ATTCTATTTT
1992568 TTCTATTCTATTAGTATTAGATTAGTA
1 TTCTATTCTATTAGTATTAGATTAGTA
1992595 TTCTATTCTATTAGTATTAGATTAGTA
1 TTCTATTCTATTAGTATTAGATTAGTA
1992622 TT
1 TT
1992624 AGTTAGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (27 bp):
TTCTATTCTATTAGTATTAGATTAGTA
Left flanking sequence: Indices 1992068 -- 1992567
AAGTCCCATAGGTTTGATCCTATAGAATCTGACCCATTTTCTCATTGAGCGAGGGGTACGAAATA
AATCAGATTGGTTTTTCGATCAAAAGCACTGTGTGAAATCTTCGGTTTTTTCCTCTTTCTCTATC
CCATAGGTACAGCATTTGAATCAATAGAGAACCTTTTCCTCTGTATCTATATGAATCGATATTAT
TACATTCCAATTCCTTACTGATACCCCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGT
TAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTG
GCTTTCGTGCTTTGGTGAGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTTGAAGGGATATCT
ATATGATCCGATCGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAG
ACAGTTCTTTTCTTTCTATTCTATTAGTATTTTCTATTCTATTTT
Right flanking sequence: Indices 1992624 -- 1993123
AGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATTAGCTATTGGCGCCAGTCCTAGTCC
TACATTTTGTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCGGGAAGAGGATTGTACCATGAGAG
AAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGGCT
TTCATGCCGATCCGAATGAATCATCTTTTCCACGGAGGTAAATCCTTGCCCGCTAGGCAAGAGGA
TAGCAAGTTACAAATTTTGTTTCGGTAGGACATGTATTTCTATTACTATGAAATTCATAAATGAA
GTAATTAATCGTGGGGTGGGGTTACCATTATCCTTTTTGTAGTGACGAATCTTGTATGTGTTCCT
AAGAAAAGAAAAGGAATTTGTCAAAATTTCGGGGTCTTAAAGGGTCGTGGAAAGACATAAGAATT
CTTGAATGGAACTGGAAAAGAGATGTAACTCCAGTTCCTTCGGAA
Done.