123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: KT894204
Parameters: 2 7 7 80 10 50 500
Length:  1999602

Tables:   1   

This is table  1  of  1  ( 120 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6077--6117	20	2.0	20	100	0	82	26	9	14	48	1.75
17990--18015	13	2.0	13	100	0	52	38	30	23	7	1.83
41177--41206	16	1.9	16	93	6	53	6	20	36	36	1.79
62798--62944	71	2.1	71	83	5	181	30	12	21	36	1.90
63585--63714	30	4.3	30	100	0	260	32	13	51	3	1.56
68548--68578	15	2.1	15	100	0	62	22	25	12	38	1.90
107627--107656	15	2.0	15	93	0	51	50	0	26	23	1.50
122658--122685	14	2.0	14	100	0	56	35	21	21	21	1.96
129891--129920	15	2.0	15	93	0	51	30	26	20	23	1.98
133108--133170	30	2.1	30	87	0	90	31	19	12	36	1.89
134482--134519	19	2.0	19	100	0	76	26	26	5	42	1.76
137371--137439	33	2.1	33	100	0	138	24	8	23	43	1.82
144167--144193	11	2.5	11	100	0	54	37	7	18	37	1.79
153758--153784	13	2.1	13	100	0	54	55	7	7	29	1.55
174979--175012	17	2.0	17	100	0	68	35	17	17	29	1.93
188653--188682	14	2.1	14	93	0	51	13	20	30	36	1.90
189506--189542	7	5.3	7	93	0	65	32	13	43	10	1.79
194361--194405	21	2.1	21	84	8	56	17	24	15	42	1.88
202699--202740	19	2.2	19	100	0	84	30	14	23	30	1.94
207809--207850	21	2.0	21	95	0	75	38	23	7	30	1.82
215580--215605	13	2.0	13	100	0	52	46	7	15	30	1.74
264796--264839	22	2.0	22	100	0	88	22	22	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288352--288377	13	2.0	13	100	0	52	30	15	23	30	1.95
295544--295584	11	3.7	11	87	12	66	48	0	4	46	1.23
295541--295585	22	2.0	22	100	0	90	51	0	4	44	1.21
332065--332109	22	2.0	22	100	0	90	51	8	8	31	1.64
350801--350831	15	2.1	15	100	0	62	41	12	6	38	1.69
488018--488046	14	2.1	14	100	0	58	27	27	0	44	1.54
495025--495069	21	2.1	21	91	0	72	26	31	33	8	1.87
543603--543632	15	2.0	15	100	0	60	26	26	33	13	1.93
579524--579586	21	3.0	21	100	0	126	33	0	33	33	1.58
582553--582586	15	2.3	15	100	0	68	29	17	5	47	1.71
631721--631755	13	2.7	13	95	0	61	25	28	22	22	1.99
656017--656052	18	1.9	19	88	5	56	47	2	36	13	1.58
660576--660688	57	2.0	56	100	0	217	24	26	17	30	1.97
734263--734294	17	1.9	17	93	6	57	37	21	0	40	1.54
773679--773712	17	2.0	17	100	0	68	52	11	23	11	1.70
785861--785902	21	2.0	21	100	0	84	47	4	4	42	1.45
788897--788927	14	2.2	14	100	0	62	29	12	6	51	1.65
822944--822980	18	2.1	18	94	0	65	43	21	8	27	1.80
823599--823817	110	2.0	109	100	0	429	39	19	24	16	1.91
833438--833473	18	2.0	18	100	0	72	44	11	22	22	1.84
850821--850895	21	3.2	24	75	12	84	13	22	8	56	1.63
917841--917875	17	2.1	17	100	0	70	42	17	22	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929553--929578	13	2.0	13	100	0	52	30	23	15	30	1.95
967021--967048	14	2.0	14	100	0	56	28	28	7	35	1.84
972882--972921	20	2.0	20	100	0	80	25	30	10	35	1.88
989456--989484	12	2.3	13	94	5	51	41	0	48	10	1.37
1015348--1015392	24	1.9	23	90	4	72	8	35	2	53	1.45
1015871--1015910	20	2.0	20	100	0	80	20	15	25	40	1.90
1033219--1033270	21	2.4	21	90	3	77	48	13	0	38	1.43
1033230--1033271	21	2.0	21	100	0	84	47	14	0	38	1.44
1051870--1051920	24	2.1	24	85	0	66	64	5	9	19	1.44
1051973--1052052	42	1.9	42	97	0	151	40	25	16	18	1.91
1071677--1071716	21	1.9	21	90	10	64	40	15	25	20	1.90
1099729--1099778	25	2.0	25	100	0	100	28	12	16	44	1.83
1101998--1102043	22	2.1	22	100	0	92	30	21	17	30	1.96
1139971--1139998	14	2.0	14	100	0	56	42	7	21	28	1.79
1191894--1191919	13	2.0	13	100	0	52	23	23	15	38	1.92
1196292--1196316	8	3.1	8	100	0	50	36	36	12	16	1.85
1209259--1209288	14	2.1	14	93	0	51	26	23	36	13	1.92
1273525--1273554	15	2.0	15	100	0	60	26	40	0	33	1.57
1281747--1281771	12	2.1	12	100	0	50	40	20	16	24	1.91
1296363--1296400	19	2.0	19	100	0	76	31	10	31	26	1.90
1306166--1306206	20	2.0	20	86	9	57	26	26	0	46	1.53
1309549--1309583	18	1.9	18	88	11	54	31	28	11	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323766--1323801	18	2.0	18	94	0	63	13	22	11	52	1.72
1336012--1336058	19	2.5	19	96	3	87	34	21	8	36	1.84
1343067--1343102	18	2.0	18	100	0	72	33	16	16	33	1.92
1345764--1345789	9	2.9	9	100	0	52	46	0	11	42	1.40
1369811--1369849	19	2.1	19	100	0	78	15	25	25	33	1.95
1384517--1384545	10	2.9	10	100	0	58	31	20	41	6	1.79
1396756--1397164	205	2.0	204	100	0	809	30	17	19	31	1.95
1433472--1433507	18	1.9	19	88	5	56	13	36	2	47	1.58
1465532--1465557	12	2.2	12	100	0	52	34	15	7	42	1.75
1477301--1477334	17	2.0	17	100	0	68	64	5	23	5	1.38
1510913--1510956	21	2.1	21	83	8	54	38	18	22	20	1.93
1519440--1519478	17	2.3	17	100	0	78	53	23	0	23	1.46
1526206--1526232	13	2.1	13	100	0	54	29	29	0	40	1.57
1531567--1531600	17	2.0	17	100	0	68	23	35	11	29	1.90
1553226--1553260	12	2.9	12	100	0	70	17	25	31	25	1.97
1555384--1555433	24	2.1	24	100	0	100	22	28	16	34	1.95
1565228--1565253	13	2.0	13	100	0	52	15	15	38	30	1.88
1579171--1579202	16	2.0	16	100	0	64	37	6	12	43	1.68
1586732--1586757	13	2.0	13	100	0	52	30	15	15	38	1.88
1623723--1623759	17	2.2	17	100	0	74	27	16	29	27	1.97
1652185--1652221	17	2.2	17	100	0	74	35	21	8	35	1.83
1678897--1678923	14	1.9	14	100	0	54	33	37	7	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1680243--1680272	15	2.0	15	100	0	60	26	20	26	26	1.99
1688481--1688515	17	2.1	17	100	0	70	40	0	5	54	1.24
1696613--1696640	14	2.0	14	100	0	56	35	35	7	21	1.81
1756612--1756660	13	3.7	13	78	5	62	55	2	26	16	1.52
1756626--1756667	14	3.1	14	72	6	50	50	4	30	14	1.63
1756613--1756667	27	2.0	27	100	0	110	50	3	29	16	1.62
1769203--1769228	13	2.0	13	100	0	52	30	7	15	46	1.74
1792424--1792461	18	2.2	17	90	9	60	10	28	18	42	1.83
1817493--1817525	13	2.5	13	95	0	57	15	33	24	27	1.95
1840314--1840339	13	2.0	13	100	0	52	30	15	23	30	1.95
1847505--1847545	11	3.7	11	87	12	66	48	0	4	46	1.23
1847502--1847546	22	2.0	22	100	0	90	51	0	4	44	1.21
1856472--1856501	16	1.9	15	93	6	51	36	36	20	6	1.79
1871051--1871075	13	1.9	13	100	0	50	28	16	24	32	1.96
1896942--1896978	19	1.9	19	88	0	56	10	37	16	35	1.83
1923975--1924036	29	2.1	29	91	5	99	29	12	45	12	1.80
1952964--1952989	13	2.0	13	100	0	52	46	15	0	38	1.46
1953198--1953269	23	3.2	23	81	15	80	56	0	4	38	1.18
1957413--1957489	38	2.0	38	100	0	154	24	5	20	49	1.69
1957506--1957565	12	4.6	14	85	12	58	46	15	1	36	1.55
1957527--1957563	12	3.1	12	100	0	74	43	16	0	40	1.48
1957619--1957647	14	2.1	14	100	0	58	48	13	0	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1957626--1957682	23	2.4	24	91	5	82	49	10	0	40	1.37
1957635--1957682	23	2.1	23	100	0	96	54	8	0	37	1.31
1957674--1957733	22	2.7	23	75	15	63	61	0	10	28	1.28
1957682--1957753	14	5.1	14	81	10	76	65	0	11	23	1.25
1957876--1957919	15	2.9	15	100	0	88	40	11	6	40	1.68
1992535--1992585	18	3.1	18	78	21	74	19	11	3	64	1.41
1992552--1992579	14	2.0	14	100	0	56	14	14	0	71	1.15
1992576--1992626	6	9.2	6	83	12	56	31	3	13	50	1.60
1992576--1992626	11	4.6	12	72	18	56	31	3	13	50	1.60
1992568--1992623	27	2.1	27	100	0	112	28	7	10	53	1.62

Tables:   1

The End!