Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037949
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 403704
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Found at i:51 original size:16 final size:15
Alignment explanation
Indices: 30--60 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
20 TTGGGACTTG
30 ACAGTCTTAGATCTCC
1 ACAGTCTTAGA-CTCC
46 ACAGTCTTAGACTCC
1 ACAGTCTTAGACTCC
61 TTGGTTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (15 bp):
ACAGTCTTAGACTCC
Left flanking sequence: Indices 1 -- 29
TGTCTTACGACTGGACACTTTGGGACTTG
Right flanking sequence: Indices 61 -- 560
TTGGTTTTCCCGTATACTCCAAATTTAGACATATTCTTCCCAAGGGGCATGAAAACTTCTTTGGC
TTTACTTCACTTCCCAGCCTCCGGCACAGCGAACAGCGCCCCTCCTGGACAATTTTTCCTTGGTC
GAATTTTTAACAAGATATATTTTAGTATTTGAGCGGCGAGGCTTTTCCGGTGTATAAAGAAGAGA
TAGAAGAAAGATTAGCAACTTTTTTGCTTCGTGATGCCGCTGTCGCCGACATACTTGACCACCGC
CTTCCGTTTGCTATTGACTAAGCGCATCTATCTACTTCAACCGCGGGTGTGATTTTTTCCTGATG
TGGACCTCTCTCCCGAGCTTTGCCTCCAGTAGCTTCCTTTTGATAGAGAACTTAGTGAGATCGTA
AATAAAAGAAGTATAGGCTTCCTTCTCTCTCCGTTATGATAAATTCGAATCAAGGACTTGGCAGG
TGCATTATCCTCTTTCTTAGGCGATTTCTTCTAAGTTCTAAAGGC
Found at i:7899 original size:15 final size:15
Alignment explanation
Indices: 7875--7906 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7865 TTTTAAAACC
7875 TTATAAGATTTCGTA
1 TTATAAGATTTCGTA
*
7890 TTATAGGATTTCGTA
1 TTATAAGATTTCGTA
7905 TT
1 TT
7907 CCGCCCATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.16, T:0.50
Consensus pattern (15 bp):
TTATAAGATTTCGTA
Left flanking sequence: Indices 7375 -- 7874
GAAGGTGAGAATTCAGTATCAAATGTTGTAAGGAAAAATTGATTGATCTAGACTGAGTCTTCAAA
GGAGAGACAGCATCTGAAGTGTAGGCATGAGAGAATTTGATTAGAAAGAGAAAGAGAAGGTCTTT
TTTACGGATTTGCGGGTAAGAAGTTCTCAGACTTCTATAGTCCACAGAAGATTTCAAAGAGAACT
TCATAATCGAATGTCTCTCACTTTCATTCTTGTGAGAGAGATCAAGGGCTTATTAATTAGAGCTT
AGGCTTTGCTATGAACCCTATGAAAGACAAATACTCATGAAAAGCTTATTCGCCTATCCCCTTAG
GAGCTTCTGCTATAAAGCGATGAGGCAGAAGGAATATTCTAAATCTATAAGCCTCAGAGCCAGGC
TAGAGTTTCCCTTTCATGTCATACTATACCAAGAGTCATGTCTCAATCTTAGTCTGGTGATAGAT
TGAAGGAGTTAAGAATGCATCTTCCCACATATATCTTTTAAAACC
Right flanking sequence: Indices 7907 -- 8406
CCGCCCATCATCTTGATAATCCGGGGAACTTCCTGAAGTAACTAGCTAAATTAGAATGGATAGGA
TATGGTCCGAAATGCCAAAATAGAGAGAAAAAGGAAGTCTATCGTCGAAGTGAGGCCCTTTCTAA
AATCCCCACAAAAAAGGACTTCCGCAACTTACGGCTTCAGCAAGACTGGCTAGCTAAAGTGTTTC
CCTTTCCTTTCAAGATTACTAGAAAAAGAGAATTGTCATTTTTCCACCCGGATCTTGGTCTTATT
GTGAGTTCTCCATTTCGAAGATTTCACAGGGCCTTTACTAGCAAGACAAGTCCGCCCTTTTGAGT
TGAGTTAATATTCCCTTTCTTTGAGGATGCATTTTCTCCTTGAAAGACGAATACCATGAGTATAT
TGAAAGAGTAGAGAAGAGGAAGTGCCTCGTAAATCAAGGCTTTTGCTTCACCGCTTTTCTTGGAG
CATGCCCGTCTTTTTTCATGCGCTTTCTTGTCTCGAGAAAGTGCA
Found at i:13179 original size:17 final size:17
Alignment explanation
Indices: 13157--13191 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
13147 AGAAAACACA
13157 TCTATAAGGTCCTACTC
1 TCTATAAGGTCCTACTC
13174 TCTATAAGGTCCTACTC
1 TCTATAAGGTCCTACTC
13191 T
1 T
13192 ATAGGCTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (17 bp):
TCTATAAGGTCCTACTC
Left flanking sequence: Indices 12657 -- 13156
ACATTTGGTACAGCTCTGATTCTTGAATTCATCTATGGGGCTAGGATTCCTGCCATAGCGAGTCT
TCTTCACGAGGCAGAGAGGTATTCATAGATATAATATGGACTTTACTGACTACTATAAACGGAAA
GCAAAGGAAGTGGAGTTGCTTAAGCGAGTGTGCGCTTTCTTGGTTCTCTTTCTCTACAGTCAGGG
AGAGTGACAGTCTATTGTCTTTTCTCAAGCTAATTTACAGTCTTCAGTCTTTGATAGGTGCCTCA
TGTCGGATAGTCTTCAGTTCCAGTCTTCGGATTAAACTAAGCCGGGGTTTCAGAGTGAGGTTGCT
TGCGGTTGGTTGAATTGCGAGTCTTCGATCTAATCTGCGCGCCTTTTCGTTTATGCCTGCATTGC
GGTCTCAACTTACCTTTGATCAGTTAAGCGAACCTCAACCAAGACTCCACTCTCGAAGGAAGTCT
TAGATAGGAGAACTAGCGAGACTAAGAGAATTGTCAGAAAACACA
Right flanking sequence: Indices 13192 -- 13691
ATAGGCTAACTAGAAATAGCACTGCGAACTCAGCCAATAAAGATCCTGACAGTCTAGAACTACTA
TATACTATATTGGATAGTTAAGAATAAGCACAGGTAGAGAGAGGGACGAAGAAGGAAGATAAGAT
CAAGATTAGTAAGAAATGCCTTCCTTCTACTATCCCTATAGATTCCAAATAGGACTCAATTAATT
CGTCAACTTCAAATGGCATTCATCAGTACATAAGAAGGACATTGAGCTACTATTCTCATAAGAAG
AGAGATCTAGTTTTGGACGAGGAGCTAAAGTATTGCTTCCAAGGCCCTCTTTATTGATAGATTTT
TTCCCGTCTTTTCCTTTTGACTAAGATATTAGGAAAGCGTAAATATGCTTAAGATCCGAAAGTGG
TCATCTTTCTTGACAATCTTTGTGACACGAAGCAAATCCAAAAGAAGACAGACTCTTTCTCGAGC
TTCAGGGAATTCAATATCCAATGCTTTTTATCTCACTTTATTGTA
Found at i:26189 original size:22 final size:22
Alignment explanation
Indices: 26164--26235 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
26154 TTGACAATAA
26164 GTTCTTTCAAAATTGACTATTT
1 GTTCTTTCAAAATTGACTATTT
* ** * **
26186 GTTCCTCTGTTAGAGGTTGACAATAA
1 GTT-CT-T-TCA-AAATTGACTATTT
26212 GTTCTTTCAAAATTGACTATTT
1 GTTCTTTCAAAATTGACTATTT
26234 GT
1 GT
26236 CCCTCTGTTA
Statistics
Matches: 34, Mismatches: 12, Indels: 8
0.63 0.22 0.15
Matches are distributed among these distances:
22 13 0.38
23 4 0.12
24 2 0.06
25 4 0.12
26 11 0.32
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.44
Consensus pattern (22 bp):
GTTCTTTCAAAATTGACTATTT
Left flanking sequence: Indices 25664 -- 26163
ATCTACCGATCTGACAGGCTAAGGAGCTAAAATGAGCTAACTATCTGTATTCTCCTAACGTTCTT
AGGCCTTCTAGAATACTCTTTCTGGACCGGAATATCTCCGACTGAAGGAAAAAGAGTATCCATAG
TTCCACCTTTCCAAAGGGGGCAGTTCCCAGTGATCCAATTGCTTGCCTTCTATCTAAGTAAGATG
GTAGGTTCAAAGCAGTAAGTTTGAGTGCTAGCTTCCATTTTGAGAGATATGGTTTGAATAGATTC
CATTTTGAGCGAGTTGAAAAATCTCGTTGCAAGGTTCTCTCCATCTCCTCAATGACGCTCTCCAT
ATAAAAACGCTCTTTTTTCCTCTTTTCGGAAAGACGCTCTTTTTTCCCCTTTTTGGATGGTAAAT
ATTTCTCAGAACATGGAGTGTGAATCAAACCCATGTTTGAATTGAGATACTGGTGCAAGTTCTTC
CATTCTGACTCAGCTAGATTCAGATCTGAAAGAGGTTGACAATAA
Right flanking sequence: Indices 26236 -- 26735
CCCTCTGTTAGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCTACGACCGAATGGATC
GGATCGACTTGGAAAATGGAAAGATTTGTACAAGTTATCCGTTTCGTCACCACTTTGTGGAAAAT
CCTTAGGTATGAATATGTTAGATACCTGTGACTCGATTGCTGAAAGAGTATCTCTCCCCCCAAAA
GCATGTTTTTTTTTACCGACGCACAAAGAAAATATTTTGTTGCGAATGAACAAAGTATTGAGGAA
TTGTCCATACGTAAAATCATAATTATTGATACGGGCCCTTTCCACATAAAAGGGGAATCTTTTGT
TACAATCGAAGCAGAAGTGATATGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAA
GATAGCAACGAACTTCTATGAAATGGTTTCACGGGATTCAGCCAACTGTATTGATCAATCATCCA
CTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTTCCAA
Found at i:26204 original size:48 final size:48
Alignment explanation
Indices: 26149--26250 Score: 195
Period size: 48 Copynumber: 2.1 Consensus size: 48
26139 CAGATCTGAA
*
26149 AGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTTCCTCTGTT
1 AGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTT
26197 AGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTT
1 AGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTT
26245 AGAGGT
1 AGAGGT
26251 GTTCCAGAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (48 bp):
AGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTT
Left flanking sequence: Indices 25649 -- 26148
ATATCTTTCATACCCATCTACCGATCTGACAGGCTAAGGAGCTAAAATGAGCTAACTATCTGTAT
TCTCCTAACGTTCTTAGGCCTTCTAGAATACTCTTTCTGGACCGGAATATCTCCGACTGAAGGAA
AAAGAGTATCCATAGTTCCACCTTTCCAAAGGGGGCAGTTCCCAGTGATCCAATTGCTTGCCTTC
TATCTAAGTAAGATGGTAGGTTCAAAGCAGTAAGTTTGAGTGCTAGCTTCCATTTTGAGAGATAT
GGTTTGAATAGATTCCATTTTGAGCGAGTTGAAAAATCTCGTTGCAAGGTTCTCTCCATCTCCTC
AATGACGCTCTCCATATAAAAACGCTCTTTTTTCCTCTTTTCGGAAAGACGCTCTTTTTTCCCCT
TTTTGGATGGTAAATATTTCTCAGAACATGGAGTGTGAATCAAACCCATGTTTGAATTGAGATAC
TGGTGCAAGTTCTTCCATTCTGACTCAGCTAGATTCAGATCTGAA
Right flanking sequence: Indices 26251 -- 26750
GTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCTACGACCGAATGGATCGGATCGACTTGGAAA
ATGGAAAGATTTGTACAAGTTATCCGTTTCGTCACCACTTTGTGGAAAATCCTTAGGTATGAATA
TGTTAGATACCTGTGACTCGATTGCTGAAAGAGTATCTCTCCCCCCAAAAGCATGTTTTTTTTTA
CCGACGCACAAAGAAAATATTTTGTTGCGAATGAACAAAGTATTGAGGAATTGTCCATACGTAAA
ATCATAATTATTGATACGGGCCCTTTCCACATAAAAGGGGAATCTTTTGTTACAATCGAAGCAGA
AGTGATATGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGATAGCAACGAACTT
CTATGAAATGGTTTCACGGGATTCAGCCAACTGTATTGATCAATCATCCACTTTGGTATCTTATT
GAACAAAAATGGTGATATTGTTCCTTCCAAGAATTTCGGTTTTTG
Found at i:31800 original size:20 final size:21
Alignment explanation
Indices: 31775--31815 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
31765 ATCAGATGAA
31775 TCTTCC-GACTGATACTCGCT
1 TCTTCCAGACTGATACTCGCT
**
31795 TCTTCCAGACTTCTACTCGCT
1 TCTTCCAGACTGATACTCGCT
31816 GGATACTCGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.15, C:0.37, G:0.12, T:0.37
Consensus pattern (21 bp):
TCTTCCAGACTGATACTCGCT
Left flanking sequence: Indices 31275 -- 31774
TGAATCCGAATTTGATGGATTATAAAATACCTCGAAGAGTGATTGGTGGGACTAAGCTTCCTGAG
CTGGTATTTCTATTTTGATTCAGATAGTGAGAAGTCTCTATATCTTGATATCGACTACCATGTCA
TCAGCCTAGCGCACATATCCAAGATGAATTTCCTTGAAGAGAAATGAAATAGATTTCGATATTGT
TCTAAAGAACGGGTGAAAGCGCGCTCGCCCCTGGGATGACCATTGTCGGAAATCCTTCTGATCTT
CCTTATATCATATATCTTTCCTTGCGAAAGAAGCTATCCGAAGAGAATTTCCTAAACCCGAGATT
TTCCGGGCGAATCTATCTCCTGAGATTCATTGTTCACCTAAAAAGTATAAAGTTTCCGGAAATAT
ATGAAAGAAAGGTAGGCTGCCTTGATAGATGCGGGACTCTCGTTTGGTCGAGTATAATACGCTAT
TAATAGAGAATTCCTTCGGTCTAACCTTGCCTTGGATCAGATGAA
Right flanking sequence: Indices 31816 -- 32315
GGATACTCGCTTTTGCGCGGATTGATGTGAAAAAAGGAGTCTATCTCTTTAAAAAGATTTTAGGA
TTGGGGTCTTCCTTTCCAAGTACGTGCTACTTGACCGGATGCTTTCCTCCATTCCAGGTTTCGGT
AAAAGCTTAGGCTTCTGTCCTAATCATAGGAGGAGACCGGCTTGACCTATCTAACTGACCGTGTA
AATTTTCTTCTGATTTTCTTCTTCCCGCTTTCTTAGTTCGCGAGAGTCCCCCCGAGCATAGAAGG
GGCCAAAGTCTCCGAATACGGGAACTTCTTCGATAGCACTAATCCTAGATAAAATCGCTCTATTA
TGACACTAGCAAAAAGAATCAAGTCCTAAGGCTTTCTCCGATCCGAAGAGAATCAGTCTCCTTCC
ACTTTAGTTTCGGGATTCGATCCTTTCTTAGGCCCTTTGATGGCTTGACAAAGACGCATATCTTA
GGTCAATCCGAATTCCTGTGTAAAGACCGATTCACTGGCGTTCAT
Found at i:37702 original size:48 final size:49
Alignment explanation
Indices: 37597--37711 Score: 189
Period size: 48 Copynumber: 2.4 Consensus size: 49
37587 TTGATACAGG
*
37597 TGGTTGGAGATGCATTTTGAATTTATATTTTCCCCTAAAGAGCGTCGGA
1 TGGTTGGAGATGCATTTTGAATTTATATTTTCCCCTAAAGAGCGTCGAA
37646 T-GTTGGAGATGCATTTTGAATTTATATTTTCCCCTAAAGAGCGTC-AA
1 TGGTTGGAGATGCATTTTGAATTTATATTTTCCCCTAAAGAGCGTCGAA
* *
37693 TGGTGGGAGAGGCATTTTG
1 TGGTTGGAGATGCATTTTG
37712 CACATCAATG
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
47 2 0.03
48 59 0.95
49 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (49 bp):
TGGTTGGAGATGCATTTTGAATTTATATTTTCCCCTAAAGAGCGTCGAA
Left flanking sequence: Indices 37097 -- 37596
ATCTATCTCGAGTTACTCCCTTGAGCGATCTATCCCCGGTTTTGTGACGTCGAGTTCTAACTATT
CTCTTAGCTCGGGCTCCTATCATCGCTTCCCGCATGATAGCGGGGAAGGAAGTCGCTCGCTAGCT
ATATGCGACAGACATGAAAATCCTCGTCATATTCTACTTTCTGTCTATGAGAGTGTGGAAAGAAG
ACTCTATTGGAATCTACTTCTCATTGAGATCTTTATATATAATCCGAGGGGCGGTTTATCGAGAG
CAGATGGAAGAGTATCGCCACGCAATTGTGCGGGAAAATGGCGAGGTCTTTCTATCTCCTGGTAC
TATTGGAAGTCCACACTTTCTACTGTTGAGTGGCATTGGTCCCTAGGCCGTATCTATCATCTTTG
AGAATTCCTTTGGTATCTCATCTTCCGTGGGGCAGTACCCCTATGATCATTCGTTCGGAATGCTA
TCTCGACTGTACCCCTAATGCCGCTGGAGCACTCATTGATACAGG
Right flanking sequence: Indices 37712 -- 38211
CACATCAATGAAAGGTCTTCTCATTTCAAGAAGAGTAGAAAGTGGAATAAAAGGCTAAAAGTGCG
AGAGCAATAGTGGAATTAGTTCTCTTTGGACAGGATTACCAAGATAGCTTGGCTCGAAAAGAGAG
AAAAAGAAGGGACTTTTGGACCTGGAAAACCATCTGCCTCTCTTATGTCATTTTTCACGGCAAAC
GGATCGATTGAGACAAATAGGACGAAGAATTGAATCTCAGCATCTCCATCACCAACTTTTCCAAC
TGTCTATTTGGAATGAACCAGTCTCATACTATTCATCAAATGAAAGTAATCCTTCCGCCCGGGAA
ATACTAACTCCTGGGTGACAGCTATCTCTATACCGCTTCTTCAGAGTCTTTGGCTCGTAGACCCC
TGAGCCATACTTACGAGTTAAGGCCTTGCTAAGTCGAGCCTACCTTTCTTATTACGATGAAACTG
GCTGTACGTTTACTAAAGCATTCCGTTGACTAGAGAGAGCTTGCC
Found at i:45827 original size:39 final size:39
Alignment explanation
Indices: 45773--45851 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
45763 ATCCGTCCTA
*
45773 TCTTATACGATATTAGAAGTCCATTATGATTCATTGTCT
1 TCTTATACGATATTAGAAGCCCATTATGATTCATTGTCT
*
45812 TCTTATACGATATTAGAAGCCCATTCTGATTCATTGTCT
1 TCTTATACGATATTAGAAGCCCATTATGATTCATTGTCT
45851 T
1 T
45852 ATATATATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.43
Consensus pattern (39 bp):
TCTTATACGATATTAGAAGCCCATTATGATTCATTGTCT
Left flanking sequence: Indices 45273 -- 45772
AATCGCCTTTCTTCGCCTGCCGCGGTCTATTAGTGCTGCACTTCCGCCCAAAGTCTCGAGGTGAC
AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCG
TTGCACTTTGAAGGTCTAGATCGACCCTCTCGATAATGAAAGCGAAGTCGCCCTATTTAAAGGAG
GCGGAGGCTTCGAAATCCCCCTCCAGCGCTATACGTTTTGACCGGCCCTATCTTGCTATTGCTTG
CAGGAGCGCTCGCATGTTTTTTCTGAGTCTTTCCCTTTCATTTAGAAATCCGGCGTTTTTTTCCC
TTCGCCCTTTTACTGCTCAGAAGTGGGTTCGAACCACTGACACAAGGATTTTCAGTCCTTTGCTC
TAACCAACTGAGCTACCTGAACGACTTTTTTTCTTTCGTCAAATCCTTTTTAGATGGAAACCTTC
TCTATTCTGAATCCGCCTGCACTCTGAAGAAGAAAATCCGTCCTA
Right flanking sequence: Indices 45852 -- 46351
ATATATATATAAGGTGGTCTATAGCCCTCTTTCTCTTTCCTATCCTTTTCTTCCTTTTCTCATTT
TTCTTTCACGAATCACAGTTGATTCAACTATATCCATTCGTAGTCACATTCAACCATCAAACCGC
GACTATCAAAGAAACTGCTTGTGTGCCAACCTGCTTTTTTAGCCTATAAGGAATATAGTTATATT
GCCTTAGGGTATTCAGGATTCAATTCTTTTTGATCTCATACCAGCTTTCAATAGAAATCCATCTC
TGCGACCGTTGGGTGAGAATTCAATCAGTTCTTCTCTCTTGCTCATTACTCTTGTTCAGCCTTCT
GTCTCGAGAGATTAATCTATCAGTTTACTTTACTCCAAATCTTTTTTTTGGCTTTTCCTAAGTGT
TGGAAGAGGTCGGATGAGAACCCCGTTCCTAGTGGTTTATTGGCGAAACTTCTTTCTATTTACGG
TATATTCCAACAACTACTTTCTATATACTGAATACTTACGAGAAT
Found at i:56760 original size:21 final size:21
Alignment explanation
Indices: 56730--56771 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
56720 TTTCGAGGGC
* *
56730 TTCTTTGTCATTAGTCTAGGT
1 TTCTTGGTCATAAGTCTAGGT
56751 TTCTTGGTCATAAGTCTAGGT
1 TTCTTGGTCATAAGTCTAGGT
56772 ATAGGAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (21 bp):
TTCTTGGTCATAAGTCTAGGT
Left flanking sequence: Indices 56230 -- 56729
TACTTTCTTCCTTGCATTCTAGCATTTCAGATGTTCTTTCTTTATTGGCAATGCCCTTATATATA
TACTTTCGAGAGAGTTTCCGTTCGTTTTTCTTAGTTCGTTGAAGGATTCTCCCCGCTTATCCCAC
GTCTTCTAGTCTTCTGGATCAATGCTTCCTGAAAGTAATGTCTATTCCTCAACCTAGACTTTCTT
TCTTTTTCATGGCTCAAAATAAGATAAAAGAAGAAAGAACCTAATCCTCCTTTGTGCGAATTCTT
ATCTATCAGCCTATTTCTGACTTCTCTCTCTGTCTCTTTCTCTCGGTAAATTTTAAATGCATGCA
TGACTAAGCTTTCGCTCTAACTCGTGCTGCAAGCCAGAGCTTAATCATCAGTGCTGATCTTTCAT
TGCATTTGCTCGTTTTCATTGCAGTTTGTTGAGACATTGTTGTCCACTTTCCGTTAGTAGGGAAT
CAATAATTCGGGATCTAAGGGATCTTTGTAGAAGGTTTCGAGGGC
Right flanking sequence: Indices 56772 -- 57271
ATAGGAAAGCATCTATGCTAATTCTTTTTCAATCTTTAGATGCAATTGTTAGGGTTCGTCTGATT
TAGGAGTCTCAATCTTTTGCAAATGTGAATGGTTGTGCAAGGTGAATGGACTTTCTCTTTCTGGG
GAATCATTTCTGCCCGGACGTTCTCTCTGCCCAGAAGTCCTTTTCGACTTTCGACTCCCCCTGTG
ATCTCGTTCGAATTCGTTGTCCTTTTCTAGTTCCAAGACTACTTTTCTTGAGGAAGTCATCTTTC
TATATTTCTATTTTCTAATTCTCTATTTTCATTTTCTAAATCACATAAAAGAAGGCGATGTTGAG
AAGGACATGTTGATCTTTTTCTTTTCTCTAAATCATATAAGAGAATCTCTTTCTCTTTGTATTGT
AATAGCTTGACTTCTTTTCTGAATTACTAGCGGACGGATGGAATAGCGTAACCACGGATGGACTA
TATTTCTATAAGAGGGCTTGAGGGATTAGATTGATGGTCAAAAGG
Found at i:57041 original size:8 final size:7
Alignment explanation
Indices: 57028--57069 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 7
57018 GGAAGTCATC
57028 TTTCTAT
1 TTTCTAT
57035 ATTTCTAT
1 -TTTCTAT
57043 TTTCTAAT
1 TTTCT-AT
*
57051 TCTCTAT
1 TTTCTAT
57058 TTTC-AT
1 TTTCTAT
57064 TTTCTA
1 TTTCTA
57070 AATCACATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 6 0.20
7 11 0.37
8 13 0.43
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTCTAT
Left flanking sequence: Indices 56528 -- 57027
TCTCTCGGTAAATTTTAAATGCATGCATGACTAAGCTTTCGCTCTAACTCGTGCTGCAAGCCAGA
GCTTAATCATCAGTGCTGATCTTTCATTGCATTTGCTCGTTTTCATTGCAGTTTGTTGAGACATT
GTTGTCCACTTTCCGTTAGTAGGGAATCAATAATTCGGGATCTAAGGGATCTTTGTAGAAGGTTT
CGAGGGCTTCTTTGTCATTAGTCTAGGTTTCTTGGTCATAAGTCTAGGTATAGGAAAGCATCTAT
GCTAATTCTTTTTCAATCTTTAGATGCAATTGTTAGGGTTCGTCTGATTTAGGAGTCTCAATCTT
TTGCAAATGTGAATGGTTGTGCAAGGTGAATGGACTTTCTCTTTCTGGGGAATCATTTCTGCCCG
GACGTTCTCTCTGCCCAGAAGTCCTTTTCGACTTTCGACTCCCCCTGTGATCTCGTTCGAATTCG
TTGTCCTTTTCTAGTTCCAAGACTACTTTTCTTGAGGAAGTCATC
Right flanking sequence: Indices 57070 -- 57569
AATCACATAAAAGAAGGCGATGTTGAGAAGGACATGTTGATCTTTTTCTTTTCTCTAAATCATAT
AAGAGAATCTCTTTCTCTTTGTATTGTAATAGCTTGACTTCTTTTCTGAATTACTAGCGGACGGA
TGGAATAGCGTAACCACGGATGGACTATATTTCTATAAGAGGGCTTGAGGGATTAGATTGATGGT
CAAAAGGAGAATGCTTGACCGTATTATTTGCATTCTCTCTTTGATTGCTATTGGAAGCGCCGGTT
CTTAATAAAGTCCTATTATATTATAGAAAGGCTAATGAAAGAAGAAAAGTATATGCTAGATTTTA
TCAAGAATTTTCGGAATATTGTGGTAGACTCTTTTTTTAACTGTACTACATGGCTCAAAAATATC
GCAGGAGGGTCGGGGATTCGAGAAGTCGAAAATCCCGAGACTGCCGACGTTATGCGAGAAATAGA
CCTTCTGCGAGAAATAGACGTTATGCGAGAAATAGACGTTATGCG
Found at i:57048 original size:15 final size:15
Alignment explanation
Indices: 57028--57069 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
57018 GGAAGTCATC
57028 TTTCTATATTTCTAT
1 TTTCTATATTTCTAT
57043 TTTCTA-ATTCTCTAT
1 TTTCTATATT-TCTAT
57058 TTTC-AT-TTTCTA
1 TTTCTATATTTCTA
57070 AATCACATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 4 0.16
14 6 0.24
15 15 0.60
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTCTATATTTCTAT
Left flanking sequence: Indices 56528 -- 57027
TCTCTCGGTAAATTTTAAATGCATGCATGACTAAGCTTTCGCTCTAACTCGTGCTGCAAGCCAGA
GCTTAATCATCAGTGCTGATCTTTCATTGCATTTGCTCGTTTTCATTGCAGTTTGTTGAGACATT
GTTGTCCACTTTCCGTTAGTAGGGAATCAATAATTCGGGATCTAAGGGATCTTTGTAGAAGGTTT
CGAGGGCTTCTTTGTCATTAGTCTAGGTTTCTTGGTCATAAGTCTAGGTATAGGAAAGCATCTAT
GCTAATTCTTTTTCAATCTTTAGATGCAATTGTTAGGGTTCGTCTGATTTAGGAGTCTCAATCTT
TTGCAAATGTGAATGGTTGTGCAAGGTGAATGGACTTTCTCTTTCTGGGGAATCATTTCTGCCCG
GACGTTCTCTCTGCCCAGAAGTCCTTTTCGACTTTCGACTCCCCCTGTGATCTCGTTCGAATTCG
TTGTCCTTTTCTAGTTCCAAGACTACTTTTCTTGAGGAAGTCATC
Right flanking sequence: Indices 57070 -- 57569
AATCACATAAAAGAAGGCGATGTTGAGAAGGACATGTTGATCTTTTTCTTTTCTCTAAATCATAT
AAGAGAATCTCTTTCTCTTTGTATTGTAATAGCTTGACTTCTTTTCTGAATTACTAGCGGACGGA
TGGAATAGCGTAACCACGGATGGACTATATTTCTATAAGAGGGCTTGAGGGATTAGATTGATGGT
CAAAAGGAGAATGCTTGACCGTATTATTTGCATTCTCTCTTTGATTGCTATTGGAAGCGCCGGTT
CTTAATAAAGTCCTATTATATTATAGAAAGGCTAATGAAAGAAGAAAAGTATATGCTAGATTTTA
TCAAGAATTTTCGGAATATTGTGGTAGACTCTTTTTTTAACTGTACTACATGGCTCAAAAATATC
GCAGGAGGGTCGGGGATTCGAGAAGTCGAAAATCCCGAGACTGCCGACGTTATGCGAGAAATAGA
CCTTCTGCGAGAAATAGACGTTATGCGAGAAATAGACGTTATGCG
Found at i:57058 original size:21 final size:21
Alignment explanation
Indices: 57029--57070 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
57019 GAAGTCATCT
57029 TTCTATA-TTTCTATTTTCTAA
1 TTCTATATTTTC-ATTTTCTAA
*
57050 TTCTCTATTTTCATTTTCTAA
1 TTCTATATTTTCATTTTCTAA
57071 ATCACATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (21 bp):
TTCTATATTTTCATTTTCTAA
Left flanking sequence: Indices 56529 -- 57028
CTCTCGGTAAATTTTAAATGCATGCATGACTAAGCTTTCGCTCTAACTCGTGCTGCAAGCCAGAG
CTTAATCATCAGTGCTGATCTTTCATTGCATTTGCTCGTTTTCATTGCAGTTTGTTGAGACATTG
TTGTCCACTTTCCGTTAGTAGGGAATCAATAATTCGGGATCTAAGGGATCTTTGTAGAAGGTTTC
GAGGGCTTCTTTGTCATTAGTCTAGGTTTCTTGGTCATAAGTCTAGGTATAGGAAAGCATCTATG
CTAATTCTTTTTCAATCTTTAGATGCAATTGTTAGGGTTCGTCTGATTTAGGAGTCTCAATCTTT
TGCAAATGTGAATGGTTGTGCAAGGTGAATGGACTTTCTCTTTCTGGGGAATCATTTCTGCCCGG
ACGTTCTCTCTGCCCAGAAGTCCTTTTCGACTTTCGACTCCCCCTGTGATCTCGTTCGAATTCGT
TGTCCTTTTCTAGTTCCAAGACTACTTTTCTTGAGGAAGTCATCT
Right flanking sequence: Indices 57071 -- 57570
ATCACATAAAAGAAGGCGATGTTGAGAAGGACATGTTGATCTTTTTCTTTTCTCTAAATCATATA
AGAGAATCTCTTTCTCTTTGTATTGTAATAGCTTGACTTCTTTTCTGAATTACTAGCGGACGGAT
GGAATAGCGTAACCACGGATGGACTATATTTCTATAAGAGGGCTTGAGGGATTAGATTGATGGTC
AAAAGGAGAATGCTTGACCGTATTATTTGCATTCTCTCTTTGATTGCTATTGGAAGCGCCGGTTC
TTAATAAAGTCCTATTATATTATAGAAAGGCTAATGAAAGAAGAAAAGTATATGCTAGATTTTAT
CAAGAATTTTCGGAATATTGTGGTAGACTCTTTTTTTAACTGTACTACATGGCTCAAAAATATCG
CAGGAGGGTCGGGGATTCGAGAAGTCGAAAATCCCGAGACTGCCGACGTTATGCGAGAAATAGAC
CTTCTGCGAGAAATAGACGTTATGCGAGAAATAGACGTTATGCGA
Found at i:57535 original size:18 final size:18
Alignment explanation
Indices: 57505--57578 Score: 121
Period size: 18 Copynumber: 4.1 Consensus size: 18
57495 CGAGACTGCC
57505 GACGTTATGCGAGAAATA
1 GACGTTATGCGAGAAATA
* *
57523 GACCTTCTGCGAGAAATA
1 GACGTTATGCGAGAAATA
57541 GACGTTATGCGAGAAATA
1 GACGTTATGCGAGAAATA
*
57559 GACGTTATGCGAGAACTA
1 GACGTTATGCGAGAAATA
57577 GA
1 GA
57579 AAAAAAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (18 bp):
GACGTTATGCGAGAAATA
Left flanking sequence: Indices 57005 -- 57504
CTACTTTTCTTGAGGAAGTCATCTTTCTATATTTCTATTTTCTAATTCTCTATTTTCATTTTCTA
AATCACATAAAAGAAGGCGATGTTGAGAAGGACATGTTGATCTTTTTCTTTTCTCTAAATCATAT
AAGAGAATCTCTTTCTCTTTGTATTGTAATAGCTTGACTTCTTTTCTGAATTACTAGCGGACGGA
TGGAATAGCGTAACCACGGATGGACTATATTTCTATAAGAGGGCTTGAGGGATTAGATTGATGGT
CAAAAGGAGAATGCTTGACCGTATTATTTGCATTCTCTCTTTGATTGCTATTGGAAGCGCCGGTT
CTTAATAAAGTCCTATTATATTATAGAAAGGCTAATGAAAGAAGAAAAGTATATGCTAGATTTTA
TCAAGAATTTTCGGAATATTGTGGTAGACTCTTTTTTTAACTGTACTACATGGCTCAAAAATATC
GCAGGAGGGTCGGGGATTCGAGAAGTCGAAAATCCCGAGACTGCC
Right flanking sequence: Indices 57579 -- 58078
AAAAAAAAATACGCACGACTTTATCCTGCCTGCGCCCGCGGATGCAGCGGAACCATGGCAATTAG
GATTTCAAGACGGAGCAACTCCTATAATGCAAGGAATAATCGACTTACATCACGATATCTTTTTC
TTCCTCATTATGATTTTGGTTTTAGTATTATGGATCCTGGTTCGCGCTTTATGGCTTTTCTCCTC
GAAAAGGAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCT
TTCCTAGTATCATCCTGATGTTCATTGCTATACCATCATTTGCTCTCTTATACTCAATGGACGAG
GTAGTAGTCGATCCCGCCATTACTATCAAAGCTATTGGACATCAATGGTATTGGACTTATGAGTA
TTCGGACTATAACAGTTCGGATGAAGAGTCACTGACTTTTGACAGTTATATGATTCCAGAAGATG
ATCTAGAATTGGGTCAATTACGCTTATTAGAAGTGGACAATAGAG
Found at i:62777 original size:14 final size:14
Alignment explanation
Indices: 62758--62785 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
62748 AGCAGCCTTA
62758 TGCATAAATACTGC
1 TGCATAAATACTGC
62772 TGCATAAATACTGC
1 TGCATAAATACTGC
62786 GACTGGGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
TGCATAAATACTGC
Left flanking sequence: Indices 62258 -- 62757
AATGGAAGGGATGTAAGGTAGGAGCGAGACTGCGGGTAAAAAGAGGTGGTCCCTAGCCGGGATCG
TCTAACTATCGCTAGAGAAGGAAGTAAGCTCGTCCGGAGAATCCTTCTTCTTTTTTAGGTGGCCG
GATCGAAAAGAGAAGTTCCATTACTCTACACTAAAGGGAGAGGGATATTGTTTTCGGAGAACCTC
AAGGCGAAGAAAGGGAAGCAAAAAACCCCAGAGAGGAAGACTATTTCAGTCGACCAACCGACCCT
CTTCTTACTCTCTTTCATAAACTCTCAGTCTTCTCATGACAGGAAGAGCGCTTTGGTTCTTCCGT
ACTGGTTAGAAGGGAAGAAATGGGAAGAATACTCGCGGTCAGTACTATAAATAAATAAAGAAAGG
CTTTATTGTAATCGTGTCCGTCTTCGGCGACGGGATCAGGATGGACGCTAAAAAGAAAAAGACAA
AGCCCTCTGCTAAGGTGCTAAAGAGGGAGATAGAAAGCAGCCTTA
Right flanking sequence: Indices 62786 -- 63285
GACTGGGAGTTTTGGTATTCATTCTGGCTTCAATTCTTTATTAGGATTAGGGGATATCGAAGATA
AGGGTTCCCCCGCAGCTTCAGAGAGTCAATAAGGCCGACCCTTCTCACTAGTCAGACGATTGGCT
CCCCGCACCCTTCTCCCCAGACATAGAGAGGGTAGAGGGTAATACTTTTGGAAAGATAGAATATG
ACCACGCGAACATAAGATTCAGTTACGATTGTCACTCCCGAGGGATTTCTCTATTCTCAATATAG
TCAGGCATAGAATTCTTCGTCATTGGAGGGCCGGAGAAAAGGTTTTTCCCAGCATTTCCGTCAGA
GTGCGGGACTGAGCCTTCCGAATAAGAAAGAAAAAAAGTGCTTACTCTCGTTGGAAAAATCAACG
CACATCATATTGACTCTCTTTCGTCCAGATAGATAGAAAAGGGTTGGAGAGTCACTTTCATAAAT
TCTCTCCTTTCGAAATCTGCGCAAGGCGGCCCCCCCAGAACCAAG
Found at i:65230 original size:26 final size:26
Alignment explanation
Indices: 65201--65340 Score: 122
Period size: 26 Copynumber: 5.4 Consensus size: 26
65191 TTTACTATTT
* *
65201 ACTAAGAATTGCTAAGTAAGTATTCG
1 ACTAAGCATTGCTAAGTAAGTATTCC
* * * **
65227 ACTAAGCATTTCCAAGCAAGTATTTT
1 ACTAAGCATTGCTAAGTAAGTATTCC
* *
65253 ACTAAGAATTGCTAAGCAAGTATTCC
1 ACTAAGCATTGCTAAGTAAGTATTCC
* * *
65279 ACGAATCATT-CACAAGTTAA-TATTCC
1 ACTAAGCATTGC-TAAG-TAAGTATTCC
*
65305 ACTAAGCATTGCTAAGTAAGTATTCT
1 ACTAAGCATTGCTAAGTAAGTATTCC
*
65331 ACTAATCATT
1 ACTAAGCATT
65341 CACAAGCTTC
Statistics
Matches: 89, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
25 4 0.04
26 82 0.92
27 3 0.03
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (26 bp):
ACTAAGCATTGCTAAGTAAGTATTCC
Left flanking sequence: Indices 64701 -- 65200
CTATCTTTTTTTCGATTTTTCTTTTTTATGCTCCCAATCTTTTGGGACATCCAGACAATTATATA
CCCGCTAATCCGATGCCCACCCCGCCACATATTGTACCGGAATGGTATTTCCTTCCCATCTATGC
CATTCTTCGTAGCATACCTGACAAAGCTGGAGGTGTAGCCGCAATAGCACTAGTTTTTATATGTC
TATTGGCTTTACCTTTTTTTAAAAATACATATATACGTAGCTCAAGTTTTCGCCCGATTCACCAA
GGACTCTTTTGGTTGCTTTTGGCAGATCGCTTACTACTAGGTTGGATTGGATGTCAACCCGTGGA
GGCACCATTTGTTACTATTGGACAAATTTCTCCTGTAGTTTTCTTCTTGTTCTTTGCCATAATAC
CGATTCTGGGACGAGTTGGAAGAAGAATTCCTTCTTTTTACACCGATGAGACTGTCTGATTAGTA
AGAAATTATAAGATCAATCATTGCTAAGTTAGTATTTTACTATTT
Right flanking sequence: Indices 65341 -- 65840
CACAAGCTTCGAACGGATATATGAACCAATTACTGTATATAGGTATTGGTTTATCCCCACTCAAA
TCCATTCGAAAAAGGAATATTGCTAACAAAACCATATCTTGGCTAAGAAGAACCCTTTGGACCAT
GCAGTCCACCCGAAACCCTTTAAATAGGAGTTAGAGCAGTAAGCCGCTAACGATAATAGCTTCCC
AGAGCCAGAACCAGAACTTCATGGTCCCTTCACACACGCTACGGCCGAGTACGCTATTGTTGAGG
TCGCTAGATTATAAGAAAGAGGGAAATAAGGTAGTTCACAAAGGAATAGAGGCGGAATAGAGACG
GTCAGAGAAAAGGGCTTAACCTACCCCGGGATTCAAGACCACCTCCACTTTCGTACCGTGTGAAT
AATTCTATCTAAATAATTCTATCTAATAGGCAAAGAAAGTAAACAAGAAAGAAGCAATAAGGAGG
AACCTATACGGAGAAAAGAAAGATGAGACGGAGAAGCAGATAGAG
Found at i:65257 original size:52 final size:53
Alignment explanation
Indices: 65198--65346 Score: 180
Period size: 52 Copynumber: 2.9 Consensus size: 53
65188 TATTTTACTA
* *
65198 TTTACTAAGAATTGCTAAGTAAGTATTCGACTAAGCATTTC-CAAG-CAAGTAT
1 TTTACTAAGAATTGCTAAGTAAGTATTCCACTAATCATTTCACAAGTCAA-TAT
* * *
65250 TTTACTAAGAATTGCTAAGCAAGTATTCCACGAATCA-TTCACAAGTTAATAT
1 TTTACTAAGAATTGCTAAGTAAGTATTCCACTAATCATTTCACAAGTCAATAT
** * *
65302 TCCACTAAGCATTGCTAAGTAAGTATTCTACTAATCA-TTCACAAG
1 TTTACTAAGAATTGCTAAGTAAGTATTCCACTAATCATTTCACAAG
65347 CTTCGAACGG
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 3 0.04
52 79 0.94
53 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (53 bp):
TTTACTAAGAATTGCTAAGTAAGTATTCCACTAATCATTTCACAAGTCAATAT
Left flanking sequence: Indices 64698 -- 65197
TTGCTATCTTTTTTTCGATTTTTCTTTTTTATGCTCCCAATCTTTTGGGACATCCAGACAATTAT
ATACCCGCTAATCCGATGCCCACCCCGCCACATATTGTACCGGAATGGTATTTCCTTCCCATCTA
TGCCATTCTTCGTAGCATACCTGACAAAGCTGGAGGTGTAGCCGCAATAGCACTAGTTTTTATAT
GTCTATTGGCTTTACCTTTTTTTAAAAATACATATATACGTAGCTCAAGTTTTCGCCCGATTCAC
CAAGGACTCTTTTGGTTGCTTTTGGCAGATCGCTTACTACTAGGTTGGATTGGATGTCAACCCGT
GGAGGCACCATTTGTTACTATTGGACAAATTTCTCCTGTAGTTTTCTTCTTGTTCTTTGCCATAA
TACCGATTCTGGGACGAGTTGGAAGAAGAATTCCTTCTTTTTACACCGATGAGACTGTCTGATTA
GTAAGAAATTATAAGATCAATCATTGCTAAGTTAGTATTTTACTA
Right flanking sequence: Indices 65347 -- 65846
CTTCGAACGGATATATGAACCAATTACTGTATATAGGTATTGGTTTATCCCCACTCAAATCCATT
CGAAAAAGGAATATTGCTAACAAAACCATATCTTGGCTAAGAAGAACCCTTTGGACCATGCAGTC
CACCCGAAACCCTTTAAATAGGAGTTAGAGCAGTAAGCCGCTAACGATAATAGCTTCCCAGAGCC
AGAACCAGAACTTCATGGTCCCTTCACACACGCTACGGCCGAGTACGCTATTGTTGAGGTCGCTA
GATTATAAGAAAGAGGGAAATAAGGTAGTTCACAAAGGAATAGAGGCGGAATAGAGACGGTCAGA
GAAAAGGGCTTAACCTACCCCGGGATTCAAGACCACCTCCACTTTCGTACCGTGTGAATAATTCT
ATCTAAATAATTCTATCTAATAGGCAAAGAAAGTAAACAAGAAAGAAGCAATAAGGAGGAACCTA
TACGGAGAAAAGAAAGATGAGACGGAGAAGCAGATAGAGCAAGTG
Found at i:65747 original size:14 final size:14
Alignment explanation
Indices: 65728--65756 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
65718 GTACCGTGTG
65728 AATAATTCTATCTA
1 AATAATTCTATCTA
65742 AATAATTCTATCTA
1 AATAATTCTATCTA
65756 A
1 A
65757 TAGGCAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (14 bp):
AATAATTCTATCTA
Left flanking sequence: Indices 65228 -- 65727
CTAAGCATTTCCAAGCAAGTATTTTACTAAGAATTGCTAAGCAAGTATTCCACGAATCATTCACA
AGTTAATATTCCACTAAGCATTGCTAAGTAAGTATTCTACTAATCATTCACAAGCTTCGAACGGA
TATATGAACCAATTACTGTATATAGGTATTGGTTTATCCCCACTCAAATCCATTCGAAAAAGGAA
TATTGCTAACAAAACCATATCTTGGCTAAGAAGAACCCTTTGGACCATGCAGTCCACCCGAAACC
CTTTAAATAGGAGTTAGAGCAGTAAGCCGCTAACGATAATAGCTTCCCAGAGCCAGAACCAGAAC
TTCATGGTCCCTTCACACACGCTACGGCCGAGTACGCTATTGTTGAGGTCGCTAGATTATAAGAA
AGAGGGAAATAAGGTAGTTCACAAAGGAATAGAGGCGGAATAGAGACGGTCAGAGAAAAGGGCTT
AACCTACCCCGGGATTCAAGACCACCTCCACTTTCGTACCGTGTG
Right flanking sequence: Indices 65757 -- 66256
TAGGCAAAGAAAGTAAACAAGAAAGAAGCAATAAGGAGGAACCTATACGGAGAAAAGAAAGATGA
GACGGAGAAGCAGATAGAGCAAGTGCCAGAAGAAGACTTCCACTACTCTCAATCAAGGGATAGAT
TTAGTACACTAGATATCGAATGAAGACTATCCAACATGAGGCACCTCTCACTGACTGAAAACTGA
TGATTAGCGATAGCCTATCCCGAACATCTGACTTCCCATTTCGTAGTCATCAGGCTGAGAACATT
CCTTACTTACTATATGGAAAGCGAGAATGGGAGTTTCTCTCTCTGTGCAAGATCAGATCGGTCTT
TCCCATAGAAGACGAAAGTCATTCAATAACATCTGCAAAACCAATGCTTAGGGCAATTGCAGTAG
CTTTACCCTTAACTGCCACTATGGCTAGGAGATAGACTGAGAAAGCCTAGAAAGAGATAGATCAG
CAAAACGAAAAGTCGAATCACCTATATCAAATGCAAACGAAGCCA
Found at i:71549 original size:17 final size:17
Alignment explanation
Indices: 71527--71560 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
71517 CGAGAAGTCG
71527 ATCGACTCCTAAGGCAT
1 ATCGACTCCTAAGGCAT
71544 ATCGACTCCTAAGGCAT
1 ATCGACTCCTAAGGCAT
71561 TCGGAATCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (17 bp):
ATCGACTCCTAAGGCAT
Left flanking sequence: Indices 71027 -- 71526
GCGATCCACTGATAACGAGAGAAGCTTGCCCTTGGGCTTTATCTTCTTAAGTGCAAACCACTTTC
CTTTGGTCTGATGAACTGACTGAACTCTTCTTTCTTCACTTTGCCGAGCATAGCTCACTCCCTTT
CAATTTCTTAGAAAATAGTCAAATGCCCCGCTTTATTTAAGCCATCATGGAAATGCCTATGACGT
TCAACAACTGTTTTCCGGCGAGAGGTCATAAAAAGCGTTTTGTGAATAGATCATTCGTTCTCCCT
TTTAAAAGCCTTCCAACCTTTTTTCTTAATCCCATTCTGCTCATTCTGCTTAAGGACATGAGCGC
CCTTTCCTCTTTCGTCATGGTAGGGAATGAGTCTTGGTCGGTCAAGGTAAGCCTTTCGATTCAAA
TTCTCGTATAAGGAAGGGCATACCCTTCTTTGAATAGATGCATAGAGAAGGCAAGCAATGTTAGC
CGCCCTGTTGAAGTTTGAGGCTCCGCAGCCAAGACCGAGAAGTCG
Right flanking sequence: Indices 71561 -- 72060
TCGGAATCTCGGGAAAGTTTTAGGCAAAGTTCTTGTAGAGGAGGTGAGAGTAGTTGGCTTATCTA
TAGACCACTGGGCAGGGTCCTGAACTAAGACCATCTAAGAAGAAAGTGGCCAGTCCGCTAAGGGA
AGATTCCTTGGTTTATCTTCGCTTGGAACCTTTGGCCGCCCTCTTCGCTCACCCGGAAGTGAGAA
AAGGGCCTTTCTTATCCCATTCTTTCCCGGCACAAGAATAGAATATTAATATTATAGTAGAAGAA
GAAAAGGATTCTCAAAGTAATAGAGAGAATTTCCTTTTTTGCTATCTAGCTCCGCGAGCTAGGAG
GGCACCATGAGGGCAAGGCAAAAAGTCAGATAGAATCATGGCCCTTTTCGTACTTGATTTTGCTG
CTGATCTCAATCTTCGAGCAGCTCCTTCGTCTTCAGGCGGATCGGATCTTCCTCCGACTCCGATA
AATAGGTCCTGCGGGATTTCGCCTCGACTCAGCTCTCTATAAAAG
Found at i:85872 original size:15 final size:15
Alignment explanation
Indices: 85852--85888 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
85842 AAGATAGATA
85852 GAAAGAGAAAAA-AAG
1 GAAAGA-AAAAAGAAG
85867 GAAAGAAAAAAGAAG
1 GAAAGAAAAAAGAAG
85882 G-AAGAAA
1 GAAAGAAA
85889 GATAGAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
GAAAGAAAAAAGAAG
Left flanking sequence: Indices 85352 -- 85851
TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACC
GCCCGTCACACCCTGGGAATAGGTTTCGCCCGAAGCATCGGACCAATTCTCACCCAAAACTTCTG
TGGGACAAAGAAATAGTAACACAAAGCCTTTTGGTGGGCTTATTGGCGCATACCACGGTGGGGTC
TTTGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCAGTGA
CGATGGAAAGAAAGTTATACAGAAAAAGAATGCTTAAGGACAGAAAAGGGAAGAGAACTAAAATA
AGCCATTTGACTTCTTGTTCAGAAAGAGGAAAGAAAGAAAAAGCGGGCACTACGGTGAGACGGGA
AAAGACCCGATCCCATTCCGACCTCGATATGTTACATCGTCTCACGCCATATGTACTGAGATTGT
TCGGGAGACATGGTCAAAGCCCGCTAAGAAAAAGAAAGATAGATA
Right flanking sequence: Indices 85889 -- 86388
GATAGAAAGATAGGGAATCCATAGAATGCTAGGCAGGAAGAAAGAGTGAAGAAGGAAGAAAGAAA
AGAGAGATAGAAAGAAAGAGTTGGAAGGAAAAAAGAAAAGAAAGATAGAAAAGACTAAGCTTTCT
ATTTTTATGCGAAAGAAAAAGAAGAGAAAAAATACAAAAAGAAAAAATCGTAAATTACAAAGCTT
GATTTGAGAGAAAAATGCACAAATGTTAGAGGGCGCAAAACTAATCGGAGCAGGAGCAGCAACTA
TAGCATTAGCAGGGGCGGCTATTGGGATTGGAAACGTTTTTAGTTCTTTGATTCATGCCGTCGCA
AGAAATCCATCTTTAGCAAAACAACTCTTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGC
TATTGCATTGTTTGCCCTAATGATGGGATTTTTGATTCTCTTTGTATTTTAATAAAGAAAAAGAA
AGATAATAAAGGAAATGGAAAACCCGACAATGGAAGACCAAATAA
Found at i:85989 original size:38 final size:38
Alignment explanation
Indices: 85926--86004 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
85916 GCTAGGCAGG
* *
85926 AAGAAAGAGTGAAGAAGGAAGAAAGAAAAGAGAGATAGA
1 AAGAAAGAGTG-AGAAGGAAAAAAGAAAAGAAAGATAGA
85965 AAGAAAGAGTTG-GAAGGAAAAAAGAAAAGAAAGATAGA
1 AAGAAAGAG-TGAGAAGGAAAAAAGAAAAGAAAGATAGA
86003 AA
1 AA
86005 AGACTAAGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 26 0.70
39 9 0.24
40 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.30, T:0.06
Consensus pattern (38 bp):
AAGAAAGAGTGAGAAGGAAAAAAGAAAAGAAAGATAGA
Left flanking sequence: Indices 85426 -- 85925
ACCCTGGGAATAGGTTTCGCCCGAAGCATCGGACCAATTCTCACCCAAAACTTCTGTGGGACAAA
GAAATAGTAACACAAAGCCTTTTGGTGGGCTTATTGGCGCATACCACGGTGGGGTCTTTGACTGG
GGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCAGTGACGATGGAAA
GAAAGTTATACAGAAAAAGAATGCTTAAGGACAGAAAAGGGAAGAGAACTAAAATAAGCCATTTG
ACTTCTTGTTCAGAAAGAGGAAAGAAAGAAAAAGCGGGCACTACGGTGAGACGGGAAAAGACCCG
ATCCCATTCCGACCTCGATATGTTACATCGTCTCACGCCATATGTACTGAGATTGTTCGGGAGAC
ATGGTCAAAGCCCGCTAAGAAAAAGAAAGATAGATAGAAAGAGAAAAAAAGGAAAGAAAAAAGAA
GGAAGAAAGATAGAAAGATAGGGAATCCATAGAATGCTAGGCAGG
Right flanking sequence: Indices 86005 -- 86504
AGACTAAGCTTTCTATTTTTATGCGAAAGAAAAAGAAGAGAAAAAATACAAAAAGAAAAAATCGT
AAATTACAAAGCTTGATTTGAGAGAAAAATGCACAAATGTTAGAGGGCGCAAAACTAATCGGAGC
AGGAGCAGCAACTATAGCATTAGCAGGGGCGGCTATTGGGATTGGAAACGTTTTTAGTTCTTTGA
TTCATGCCGTCGCAAGAAATCCATCTTTAGCAAAACAACTCTTTGGTTATGCCATTTTGGGCTTT
GCTCTAACCGAAGCTATTGCATTGTTTGCCCTAATGATGGGATTTTTGATTCTCTTTGTATTTTA
ATAAAGAAAAAGAAAGATAATAAAGGAAATGGAAAACCCGACAATGGAAGACCAAATAATGGAAC
AGCCTGGAAGAAAGAAACTTTGGGAGAAAGTCAAAAACTTCACTGTCTTTCACCTTGAATTCATT
GGGTGAAATCTATTGACCTCTTTAGTGAAATATATGATTGGAGAA
Found at i:149497 original size:15 final size:16
Alignment explanation
Indices: 149477--149509 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
149467 GCGGACAGAA
149477 TTTCTTTT-TTTCTTC
1 TTTCTTTTATTTCTTC
*
149492 TTTCTTTTATTTTTTC
1 TTTCTTTTATTTCTTC
149508 TT
1 TT
149510 CTTGTTTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTCTTTTATTTCTTC
Left flanking sequence: Indices 148977 -- 149476
CTACTCAAAAGTAAGAGGGGTTTTTACAAGAAGAATGAATTACCGAAGGGGTCCAATAAGACTTC
CTTTCGAGTAATAAAGGGACGGACTGATATTCCGAACTCCCGCGCAAGAAGATAAATGAGGGAAA
GGCTTTCGAAAGGCATTGAACCCCCCGGAATCGTAACATTCATAATGAGAAACTTTACAGAGCCC
TTTCGCTCCTTGAATCACTGAGAACAAACTTGAGACAATCCTATAGTAGCTTCTCGTAGCTAACA
GATGATCTTCACCAAATTGGGTCAGAATGTAGCCCGATCCGAACGCAATTAGATGTCTCAAGTCA
ATACTGACTACCTACCCGGACCCGGACCAGAAAAGGGCGAAATATAGCCTAAAGAATTATGGCCC
TACACCGAGAAGCTATTTGTAAGGGACTAAAAAAGTCTCCGGGTTGTGCTCAATAACAGCCGCTC
CATCCTGCACTTGAGCCAATTTTTCCCGCTTTCCAGCGGACAGAA
Right flanking sequence: Indices 149510 -- 150009
CTTGTTTTGCAGCGAAGGTTAAGAAAGCCACGGAGCTGTAGATTCGAACGTTTTCATGGTCCGGC
GTGCGTTATCGGTGTGCTCATTCCGGATTTCTTTGTACCGCCCAGAAGGGCAAGAGAGAGAAAGT
GATCAAAGACCAAGACACCCGACAAACAAAGAACTCTTGTTATATAATTTAAGCGCCCCAAGGGG
TGGGCCTTCTTCTCTAGAGGCAAGATAAGCCATTGAAGCGAATGAACATTCATCCGTTTCTATTT
CCATCTCTCCATTCGTCGCTCATATATGAGCTCCTACGCTCCGACTTCATCGCCTGGTCCGGCCC
CCGCAAAACCCTTCTTTCTCATTCGCCCGGAGGCTCGAGCCTTATCTGGTCTGGGCTCATTTTAG
CTTCTCTTTTACCTTCTCTAGGAAGTGATTCCACGCGAGGAGTAGTATGGAAAATAGACCCAACC
CAAGCAGTAGATAAAGACGAAAGGACATCGTGCTTCAGAAGAGGA
Found at i:157972 original size:14 final size:14
Alignment explanation
Indices: 157953--157982 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
157943 TGAGAAAAAG
157953 TAGAGTAAGACATA
1 TAGAGTAAGACATA
157967 TAGAGTAAGACATA
1 TAGAGTAAGACATA
157981 TA
1 TA
157983 AGCAAAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (14 bp):
TAGAGTAAGACATA
Left flanking sequence: Indices 157453 -- 157952
AGAGGCGAGATGGAGACTTAGGCTATAAAAAGAAATGAGGTTCTTCTTCTTTCTCTCCTGTCCGA
TTCTTGATTCTGGATTTGTCCTCTTCTTCCATTAATTGCTAGTAGAAGGAATTGGATCTAGTACT
TACTACAGCTGAACATTCTTAGCCGAAAAATGCAAGGACAGGTAAAGCACTTAGCTAAGATCTCC
CTATCCCCTCAACCTCCCTTTGCTAAGGGGATGGTAGTGAAGTCTCTTCTGATAGGAGTGAGCAC
CTTAACTTCTATCTAGCCTCAGGGAAGGAAGACGCCCTAAAAATTAATGGGAAGGAGTGAACCGG
CCTGACCAAGAGCAGAAGGACTTGTCATAGTGGATAAGGACTGCTTTGCTTGATGAGAGGAGCTC
TCACAGTATCTTTCTCGATTCAAAGTCCTATACTAGCTAGACGACTGAAAATCTGAAGTTGACTT
CCATACTCAAGGCGATAGAGGAGAAAGGTTAGGAATGAGAAAAAG
Right flanking sequence: Indices 157983 -- 158482
AGCAAAAGTTAGTCAGTCCATTTTAGCTCGGTAACGGATCCTTTAAGAGTGAAACTTTCTCCCGG
ATATATATGGAAAGCAAGCCTACTCTCCTTCTCTACCATCTCCGAATAGCTCTTCTCTGCCTGCT
CAACATCTCTCGTTCTTAGGCGGGGACAGGATTCGAACCTGTAGTCTTCAGGTCATGAGCCTGAT
GAGTTGACCAATTCCTCTACCCCGCGCCTTCTCGATTCTTCCCCATCTCTTCCGGGCTTACGGGC
GCAGCACGCTACCTACCTTCTTTATTCTCATCTCTTCACTCTTTCAGACCTTCTTCTTTTAAATG
ATTTAGAATACTAGATTCAGATCCCTCATGGAGTCATAGATAAGCGATAGAAAAAGCACTAAGAG
TCGATCTTCTTCGAAATGATTTTTCTTCCTTGATTTGGACTAGAAAAGAAAAAAAGAATCCATCT
AGAAAGAGATCAGACACGAGATCAAAAGTAAGTTGACCAACTCCC
Found at i:175407 original size:16 final size:16
Alignment explanation
Indices: 175386--175417 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
175376 GATGCTATAT
175386 TCTATAGTTAGATTAG
1 TCTATAGTTAGATTAG
175402 TCTATAGTTAGATTAG
1 TCTATAGTTAGATTAG
175418 ATTATGGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (16 bp):
TCTATAGTTAGATTAG
Left flanking sequence: Indices 174886 -- 175385
GGAGAATGATTTGGATTCCCGTCCCGGTTCATAGTCCGGTGCGTCCACAGAAGAGGAAAGCGCAA
TGGCCTCATCTCTCATCTCATATATGCCACCCTCGCTGGGAGTAAGAGTGTCGCGGGGCTACGGT
AAGGAAAGTGGCCGCAATCAAGTAAGTGAGGAAGAAAAAGCTTTTAAGCGCAGCTAAGCTAATAT
GCGCCGGAGAAAGTAAGATGGCGTAGGTTTGACTATTCGGCCCGGACCATTGATTCTCCAGATAG
GCATTACTCTCTCTCACCTATCGACGAGAAGGTCCCTCTCTCGGCCTCGAGGTCCATTTTGCTGG
TTAGAGGAGACTAGGCATATTCCCTACGTAATGCCATGAGACCTTTCGCTCATTTATTCTACCCT
CCCGTCCAGACGCGAGCCCTTTCTCATTATCATCTACCGCCCTTTCTTTTCTCCCAGCGATTCTG
GCATGAAAATCTTCCTTTTTATGCTTGACTTCGTCGATGCTATAT
Right flanking sequence: Indices 175418 -- 175917
ATTATGGCAGGATCTGACACCCGGACGGCAAAGAAAGCCTCCTTTAAGACGAATTGTGCTATGCC
CCCCCCGATCTTTATAGAGCGAAAGAGCTGCCTGGTAATCCCTAGGTTGCAGCACCACCTTAGGT
CCTGCACTCCTCGCGCCGCTGCCGCCGTCTCTAGGACCGACCGACGCCTCACCTGCACAGGTACC
TGCCTAGTGTCGGTCGAACATTCAACATAGTGTTCGGACTCATGTGCCTGCCAGAATCAGGGGTC
TTCGAGCCTGCTGCGTACTCTTTCTAAATAAGCCTTGCGGCGACAAAAAGATTAGACGCCCTCCC
CCATGCTACGGTTCCATGCGGTCCGAAGCCGGTGCCGCATTAGGTTAGGGAGCTGGGCGATAATA
GGTCCTCCGCATCCCAAAGCTAGCTGCCCTCCTAGGCGCACAACACTAAGTAATCCAAGCCAACC
CACATTACTGACTAACGGTGGATAATCATATTTCTTAGACGTACT
Found at i:180120 original size:13 final size:13
Alignment explanation
Indices: 180102--180126 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
180092 ACTGCTAGGG
180102 AGAAAGGGAAGAT
1 AGAAAGGGAAGAT
180115 AGAAAGGGAAGA
1 AGAAAGGGAAGA
180127 CTGAAGCATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.40, T:0.04
Consensus pattern (13 bp):
AGAAAGGGAAGAT
Left flanking sequence: Indices 179602 -- 180101
TAAATAAGTTCTACTCCTTCCCTCGAATAAACGAAATCCTGACAAGACAAATACTTCACTCAAGC
ACGAAAATGATGTCAGAGTATTGATAGCTAAGAATCCCCGATAATCCAGAAAATGGTGAGCTAGT
CTCTCACTCCTTGGCAAGGGAGAAGATATGGAAAGGCAGATCGATCTCATCGGACTGGCTGGGGT
AAATACGCGAGGAAGAGGTCAAATACCTAATGAGTTCTAGTGGTATACGCGAGCAAGAGTCTTAG
ATTAGCCAGGTGTGAAATCCGTGGATGGAATGAAGGATCTTTCTCTGCAAAGTAAACAGTATCAA
AAAGACGTCATCCACGAGCGGAAAGGAAGAGATTAGGGCATTAAGATCACAATAGTCCAAGGAAG
GGGCTATACGCGAGGAAGAGTCAACTATTTACCAGGTGTGAGATTTCATTGTATGACAGGAGGAA
AGACGGGAATAGAATGCACAAAGAAGAAAAGAACAACTGCTAGGG
Right flanking sequence: Indices 180127 -- 180626
CTGAAGCATCTCACGGGCTTCTCGCAATGGTGTCTGCCAGCTACTCCGGCACAAATTGAGAAATG
ACAAAAGTGAGGAGATCCTCTTTTATGTGATTTCAAAAGTCAAATATTTCTATTTCAGTGAACCG
AAGAAAGACTGATGCCTATCCCTTTTCCTTGGCTATCCAATACTGGAAACTCAGAAAGCAAGAAA
GGAAGTGCACGTGCTTGTGCACCTGACTGACTCTCTTACCCTTACCGCTCTACCTCGGCATAAGA
CGAAGCGGAAGCAAAGACCCATACAAGGAAGCAAGAAGGAAGTGACGCAAGAAACCAAACTAGGA
AACCCTTGCACTTGGGCACTTAGTACACCTTTCCTTCCGACCTTACACTCGAAAAAGGACCAAAG
CTACCTTTAGTTGGCTGTACAGGTGAAAGAAGAATGTGGTCTACCTTTCGGAGGACTAGTGAGAT
AGAAATAGAATTGGGGAAGTCCAACATGGAGAAAAAGTAGACAAG
Found at i:184120 original size:13 final size:13
Alignment explanation
Indices: 184102--184130 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
184092 ATTATTACCT
184102 TATGTAAGTGAAA
1 TATGTAAGTGAAA
184115 TATGTAAGTGAAA
1 TATGTAAGTGAAA
184128 TAT
1 TAT
184131 AGAGAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (13 bp):
TATGTAAGTGAAA
Left flanking sequence: Indices 183602 -- 184101
ATTGGAAGGACTGAGCCAAAAGCTTGACCTTCTTCAATGGTCTTGGTGAGTTCAGTTAGATCCCT
GTGTGGGGCTTCCATAGGCCTTTACTTAACGAATAATCTAAGCCCGTGACGGATTACTTTCCATT
ATTCTTATTAGCCTATTTCTGAAAGATAGGCTTTCTTCTTACAACTCTCTTTATTTCCACCGATA
ACATTAGACTTTCTTATTCATATTTCACAGGAGAACTGTCTCGATTGAGGGAAGGGAATACTCTA
AGCAAAGCGCCTATCAAGCACACTTACCGATCCGGCAGAACCAGAAGAGAGATTCTTTATTGACT
TAGATCAAAGCAAGTTGAGAGGCCTCCCAATGGCCTATCTTTTATAGCATTTCAATCAAAGCATA
TTCATTAAAGAAAGCCGAGCTTTTGTTCACTATTTCAGGATAAGAAGGGACCGAAGCCTTTCTTT
TTTACCTGGTATGCTAGCCAATAAACCTTAGAAAGATTATTACCT
Right flanking sequence: Indices 184131 -- 184630
AGAGAATTTAGAAGCGAATTCTTTCTTGTTAGAAGATGGCTTTAGATGGCCTACTACCTATTCAC
AATAAAAGAAGAATGAGTCATCAAGCTGTTGAAAGATTTCTTTTTTGATAGATTGACGGCTCTAC
TCATTTGTATTTGTAGACGACGTAAACGAAGCGAGAGGCTTCCTGGGGTGGACGCATTGACTCTC
CCACCACGAGAAGGATGTCTCGGGGGGCCTAGAGCAAGCAAGAGAGAGCGTAGGCGAAGGTGAAA
GAGGAGTGATGCAAGAGCGAGGGCAGAGTGGATCTAGCCTAACTTTCTCCTTTCCAACCCGGGAA
CCTACTTATCTATTTTCTTTCTTGAAGTTCTAATTAGATAAAAGAGGATGTCGTCTATTGCATCT
TTTCAATTGACTTGGTCTACCTATTCTTAAGCCCGGGACCCAAGTCAACCAAGAGCGGAAAAAGG
CCCTTCCCAGTCCGGACTATACCTATTTGGTGGATTCTTGCCTTG
Found at i:185395 original size:26 final size:26
Alignment explanation
Indices: 185366--185424 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
185356 TTCAAAGATC
*
185366 GAAGGCTGGAAAGAAAGATAGAGAAA-
1 GAAGGCGGGAAAGAAAGATA-AGAAAG
* * *
185392 GAAGGGGGGAATGAAAGGTAAGAAAG
1 GAAGGCGGGAAAGAAAGATAAGAAAG
185418 GAAGGCG
1 GAAGGCG
185425 CCTTACGACC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.47, C:0.03, G:0.42, T:0.07
Consensus pattern (26 bp):
GAAGGCGGGAAAGAAAGATAAGAAAG
Left flanking sequence: Indices 184866 -- 185365
CCAAGATAGGCTTGCCCTCATATATGATATGACATGAATCGGTGCTCATCCTGCTAAGGAAAGTA
GAGGTATATCTTTCACACTTTAAGGAGATGTGGTACAAAAATGAAGAATAAGGGCTCTCAGAAGA
AGATTCTCACTAAATAATTGAACTCCGCTAAAAAGGCGAGTTTCATTTCTCAGCTGTGAAGAAAG
AATAGATATGCCGATAGCTTGCCAAGGAAGTCACTCTAGTTGATAGATTACTTGGAACTCTAGCT
TGCGCTGACCCATATCAGAGCGGTACAACCTGGAAGACGGGGAATCAGGCGTGGAATGAAGAAGA
GAGAGGAGCCGTGCAAGGACGCGGGGGTCGCAGTGAAAGGCTTTTCAAGATCTACGAACCTCTTT
TCTCTTTCGTCATTCTGTCTAGTGGCATTCAATTACTGATGGACAAATCTCTTCGGAAAGAGTAA
AAAGCTTCAAAAAGCTTTACGAAAGCCAGTCGAGATTCAAAGATC
Right flanking sequence: Indices 185425 -- 185924
CCTTACGACCATCAAGCAATCAACGAGGTAAGGTCCTTCTTTTCATTGCCAGGAAAAGGATATTC
AAAAAAAGTCAAAACACGCTCAATATGATGAGCAAGATTTAGAGAAAGATATGGAAGAATCGTAC
GTTAGACTTTTAGATTGAGAATACAGGCGGGAGCTGGACTATATACAGTTGTCAGCTTACAGCAC
TTTCTTATTGAATGACTGCTTCCTTTGTTCTACTCTCACATTTCCTTGAACAAGGTAAAGCTTCC
AATCATTCTTTCTTACCAAGAGTTATTCAATTCCAGGGAGCCAAGTCCTTAACTTAATAGGCTAG
ATGGAAATCCCGAATTGCGGAAAAACCGACCTAACGGAGGGGGCTAATTCAATTAGAGAAGTCTC
TAAGCCCCTCTCGGCGGCTTTCCTTCATAACGAAGTGGAAGGTTGGCTAAGGCCTGCCTGTCAAT
GATCTATTGAATCCAAGAAAAGTAGGAAATGCCAAAGTTATATAT
Found at i:235316 original size:18 final size:18
Alignment explanation
Indices: 235289--235330 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
235279 GGCCCTGCCT
* *
235289 ATAGTTGCGAGTCTTGTC
1 ATAGTCGCGACTCTTGTC
235307 ATAGTCGCGACTCTTGTC
1 ATAGTCGCGACTCTTGTC
235325 ATAGTC
1 ATAGTC
235331 AAGAAGGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (18 bp):
ATAGTCGCGACTCTTGTC
Left flanking sequence: Indices 234789 -- 235288
GTAATAGCTCACTGGTCTAGCTTATTTACACCGAAAATGTATCAGGGCTCAAGTTCTTCACCGAA
GCGACGAGACCTTGATCTACTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCTACGAAGGCTTTT
GGTGACAAGAACTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAA
AACAGGATCGCCTACCAGTGGAAGGTTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCC
CTAAGGAAGACCCGAAAGCGTAGTCCGATGGGTATACGAAAGTGACGAAGAAAAGAGACTACAGA
ACCAAAAAAGGATATAGGAGCGAATTGGATGATCGGTTTTTTTCTACCCCTCACTCTCCTTTCCC
CAATATGCACGATAGTCAGAAAAACCTTTTTTCTCTGGCCTAAAGCATATATATTTCTTGCTTTT
TCTTAGAGTAGGGCCAAGAAAATATATATGTGAAAGGCCCTGCCT
Right flanking sequence: Indices 235331 -- 235830
AAGAAGGTGGAAACTTCCAGGAAAAAACTGCGAATTGGGAGGGCGATCCTCCTTAATATTGGAAC
TGACCGTACCCCAAACCGACACAGGTTCACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATG
TCGAAGGAACTCGGCAAAATGACCCCATAACTTCGGGAGAAGGGGTGCTCTCCTATTTGAGAAAG
CGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGCTAACACGA
TGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGAAATAAGGAGAAGTCTTATAAGCTTTGAAT
GAAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCAT
AAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACTCAGTGAAAT
TGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAG
Found at i:236627 original size:14 final size:14
Alignment explanation
Indices: 236608--236637 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
236598 CTAATATTTC
236608 TTTCTGGAGATGAT
1 TTTCTGGAGATGAT
*
236622 TTTCTGGAGATTAT
1 TTTCTGGAGATGAT
236636 TT
1 TT
236638 GAGAGTGAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.23, T:0.50
Consensus pattern (14 bp):
TTTCTGGAGATGAT
Left flanking sequence: Indices 236108 -- 236607
AACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGA
TCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGG
CACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCG
ATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGG
TGTCAAAGGGAGAACTGCGAGAAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGG
TCTACCGGTTGTTATGAAAATAGCAGCGCCGGATCGCTAAGTTGGTATGGAAGAACTGCAGAACA
GTGGGAAATCCTTCTCTATACAAGTTCTCGTATGAGGTCTTTGACTAGGACTTTGATAGGCGAGA
GGTCTGAGTACCGCGAGGTATGTAGCTATCTCGTACTAATATTTC
Right flanking sequence: Indices 236638 -- 237137
GAGAGTGAGGGCCCCTTCAATAGGCCTTTCATTCTCTTCTTATGTCTTATGAGGTCGTGTACAAC
AACCTTAAGCGCACAAGCCCTTTTTTAGGCCTACCTCCATCCCGAGAGGAGCCGTATGAGGCGGA
AGCTCCACGTACGGTTTTGAAGCCGAGCCTTTCCAGCAATGGGGCTTAGGGACCGATATGATGAT
TGGTTTAGGTAGGGCGGCCGGCCTAATACGGGCGCCTGTAGGGATTAGTCTGTGAGACCGCGAGC
CACAAACTGACGCATGAGACTGACCCTTGACTTCGGAATAGAAAGGGGAAAGATAGCATGTCAAA
AGAGCGAAGCGAGGGAAGCATAAAATAGAAAGAGGACGCGCGAGAAGGCCTTTTAGAGATGAGTC
CTTGTGGCAAAGCCAAGTCTTCGGGCCACCAAAGCCAGCAACTGATGAGAGGGCCCTATGGACTA
AAGGGTCTAATGTCACACGAATTTCCAAAGGTACCTAGAGGAAAT
Found at i:239641 original size:14 final size:14
Alignment explanation
Indices: 239622--239651 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
239612 AACTTTTGCT
239622 TATATGTCTTACTC
1 TATATGTCTTACTC
239636 TATATGTCTTACTC
1 TATATGTCTTACTC
239650 TA
1 TA
239652 CTTTTTCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.20, G:0.07, T:0.50
Consensus pattern (14 bp):
TATATGTCTTACTC
Left flanking sequence: Indices 239122 -- 239621
ATGCATACCCATGTACAAAAAGACTTCTTCTTATTAAAGGCTTTCATTGATTACATTGTGGCAAA
AGCAGATAGAATAGTTTATCCCGGATTACTTCGATCATGGAGTTCTGTGCCAATGGCCTCTCTCG
TAAGCAGATAAGCGGACAGAGTCTAGGTTCTAAGGAGCAAAAAAAAAAGCAGAGTTCAATGCTTA
GCTGGGTTGGCAGTCAAGTCCCAGGGACAGACCGGACAGATTGAATCAGAGAACTGGTAGACTAG
TTAGGAAGAGAGAAGAAGGAGCGGGGTAGAGGAATTGGTCAACTCATCAGGCTCATGACCTGAAG
ACTACAGGTTCGAATCCTGTCCCCGCCTAAGAACGAGAGATGTTGAGCAGGCAGAGAAGAGCTAT
TCGGAGATGGTAGAGAAGGAGAGTAGGCTTGCTTTCCATATATATCCGGGAGAAAGTTTCACTCT
TAAAGGATCCGTTACCGAGCTAAAATGGACTGACTAACTTTTGCT
Right flanking sequence: Indices 239652 -- 240151
CTTTTTCTCATTCCTAACCTTTCTCCTCTATCGCCTTGAGTATGGAAGTCAACTTCAGATTTTCA
GTCGTCTAGCTAGTATAGGACTTTGAATCGAGAAAGATACTGTGAGAGCTCCTCTCATCAAGCAA
AGCAGTCCTTATCCACTATGACAAGTCCTTCTGCTCTTGGTCAGGCCGGTTCACTCCTTCCCATT
AATTTTTAGGGCGTCTTCCTTCCCTGAGGCTAGATAGAAGTTAAGGTGCTCACTCCTATCAGAAG
AGACTTCACTACCATCCCCTTAGCAAAGGGAGGTTGAGGGGATAGGGAGATCTTAGCTAAGTGCT
TTACCTGTCCTTGCATTTTTCGGCTAAGAATGTTCAGCTGTAGTAAGTACTAGATCCAATTCCTT
CTACTAGCAATTAATGGAAGAAGAGGACAAATCCAGAATCAAGAATCGGACAGGAGAGAAAGAAG
AAGAACCTCATTTCTTTTTATAGCCTAAGTCTCCATCTCGCCTCT
Found at i:285685 original size:19 final size:19
Alignment explanation
Indices: 285657--285694 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
285647 GTCTTAAGGC
285657 CCTTAATTAGGAGATTGGA
1 CCTTAATTAGGAGATTGGA
*
285676 CCTTAGTTAGGAGATTGGA
1 CCTTAATTAGGAGATTGGA
285695 AGTAGTAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.32
Consensus pattern (19 bp):
CCTTAATTAGGAGATTGGA
Left flanking sequence: Indices 285157 -- 285656
CGACTAGTCCCGACAGCTTCAACCGGGTTATTCTTTTCCACGTTATTCTTTTTCGCAGAGGAGGA
TTTTCTCCCCCCTACCTTCTACTCAAAGAGCGCCCGTCTTCTTTCTTGACTCAAGTGAGATCTCC
TCTTAGTCGGACAAGGATGAATTCTCTTATTCTGTAAGGGATCTATCTATTCTCACCTCGATCGA
CCAATCTCAACTTCCTGGGGCAGACAGAGGCTTAAGAGTCGAAGTTGAACGTAGTTAGATAATTT
AGGGCTGGGCGGACAAAGATGCCATCTCCTAAATAAGAATCGGGCTCAGAATAGGCATTTCTTTA
CTCTTGAGGAAGGGCTAACCTTTGAAGGAAAAAGACTGCTCTTAGAAAGAATTGGATTTATGGAC
AAATGCAGAGTTCGTCTATGAAGTCTTCTCTGCAATTCAAGGTCGAAATGTCTAGCCAAGAGTGG
ATAGCGGATTTATAGTAAAGGAAGAAGGGATCTTGGTCTTAAGGC
Right flanking sequence: Indices 285695 -- 286194
AGTAGTAAAGCTGTGCCCGTGGCCTAAGACTTGCCCTCTGCTCTGAGATGGCGAGAATTCTTGAG
TTTAGTAAAGGAATGGCTTAAGCCCGGGACGGGAGCTTTTTTCTTATACTAGCTCTGGCTTTCCT
TTTCTTTTGCTCTTTCTAGCTATGATATTCAAGGGACTATTGAAGTAGACCTGCGCCTTTCTCCT
AAGCCTCGGCGGGGATCATCCCTGGTAAAGAATAGCATAAGATAGCTTCTTTCTGATCTAGAGCA
AGACCATTGCTTTAAATGGATGCCACAAGTAGGCCTTGCCCAGGAAGCAGTGGTCGCTTTTCCCC
TCCCATCCTTCAATCCAATCTCTTTTTAACTGCTCTTTACTTGCCCCTGCTCGTCCGCCGCGTCG
GGCCGTGTCGTTCTCGTTTTCCCGCGCCTTTTCTTACTGGGGTGGAACGCTTAGTCTTCCTAATA
AGTCAGTTATGGCCTTAGTTCCTTATCAGGGAGCTCTCTGTATAT
Found at i:297350 original size:23 final size:23
Alignment explanation
Indices: 297320--297366 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
297310 AACCTTTGTC
297320 ATAGACAGACGCAGCTAGGCACA
1 ATAGACAGACGCAGCTAGGCACA
*
297343 ATAGACAGATGCAGCTAGGCACA
1 ATAGACAGACGCAGCTAGGCACA
297366 A
1 A
297367 CCGCTGGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (23 bp):
ATAGACAGACGCAGCTAGGCACA
Left flanking sequence: Indices 296820 -- 297319
GATTGTTACATGAGAATATACGTACTGTCAGAACGAAAGGGGGAACGAAGAAGCAGGAATCTCTA
CCTCTCCAAGCTACTACTACTAAGTAGTAAGTAGATATGATTTTTGAAAGAAAGACAGTATATTT
CACTGGTCCTGACTTTTTTACATAGTCCCAAACTAGGGCAGAGACTCTTGAACTGCTAGATAAGA
AAAGTCCGCCTAAGCTGACGGAGTCTTTTGACTTCTTTGTCAACGAAGCCTTCCATTGAGGCCCG
GTCCCGGTCGCACGGAATAGAATGAATCCATTTAAGGGACAACTCCAATCCTAAAGCTTTTGAGA
ATCTTCCAAATTGGCATTGGTTTTCAAGTTTTTCCTGCTATTGGTTCTGCTAGACAGGGGTTTCA
TACACGTTTTAGTTCGACTTTGGGGTGGGGGTAGATTCTCTTTCACTTTAAAATGAGATTGATAT
AGAAGGCTCTCAGCCGGAAATGGCGAATCGTACGAAACCTTTGTC
Right flanking sequence: Indices 297367 -- 297866
CCGCTGGAGCCTCTTTGAATTTGAAAAAACCAAGGCTAATTAGGTTCGGCTTGTACGAGATTCCA
CAATTGGATGCTCTTTCCGCGGGTACCTTAACTAGGAAGAAAGAAGAGAATGGGAAATCCCCTCT
AAGTAAAGTCAACAAGGGGTGCTATCGGGAAATTTCACCATGTAGATGATTATGAACCTTATCTT
ATGGAAAGGGATCGCTAACGGTCAGTAATCGCTTTAGCCATTTGCACAACCCAGAAATCCATGGG
CTACGCAAGGTTCCTTTACTTTGTTCAATGCTCCTCGGAAATCTTCCAGCTTTCTGCTTCCCAAG
GGTCCCTTTGCTTTAACGGACTTGGCAGTCCTTAATGGATGGTTTTAAGCTTGCAGTGCAATTGA
GATTTTGACGTAGAATCGAGTCCCAAAAGTAGGTCTGACAGAAATGACTCGGAATGCCGCCTCTT
TCGCGGGTCTGCTTTTCAACAATTGCTTATAGTCAAGTCTTTTTG
Found at i:341836 original size:13 final size:13
Alignment explanation
Indices: 341818--341842 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
341808 ATATATAAGA
341818 AAGAGGTTAGCAT
1 AAGAGGTTAGCAT
341831 AAGAGGTTAGCA
1 AAGAGGTTAGCA
341843 GAGTTCAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (13 bp):
AAGAGGTTAGCAT
Left flanking sequence: Indices 341318 -- 341817
ACTTAGGTAGGCGGACAAGTCCCTTCTTCTAGGTCGTTTCGGGCAGGACCAGGACCTCCGGATCA
AGTGGAAGGAGTGAAATTAGCTCTTTCCTGTCGAAGGAGAAAGATTAAGGTTCGAGGCTTGTCAG
CAAATCTACACGTAGTCTCGGTGCCTCGACCGGCATCATTTCCTCAGGAATACCTAAACCATTTG
CTCTTAAAGACGGGAGAAAAAGCTCACTGCCCTCATAGCTTCCCTTTCGATCTTCCTCCCCCGGC
AAATCGCTATCCTTTTCTGATTTTCTTGCTTTCTTCTTGTCTGGAATTCTTATAGAAGAGAGAAG
GGCTTTCTATCAGGTATTGTTGGTAGGATTCAGTGCGATGAAGCCTTAGTGGAGCAAGTGAATAG
GGCTTTTTGCTCGGGCATTGTCGGTCTGGACGCCTAGCATGAAAAAGCCTTCTCTAGTAGTATTC
TATACCATGTGCACTCTGATACTTCCAGTCTATATATATATAAGA
Right flanking sequence: Indices 341843 -- 342342
GAGTTCAGTCTATCTGACCTTCCCTCGCGTCAAGGCCTACTTTTGCATAGGCTCTCTCTCCTTAG
GGACGAGGCGAAAGGAGCTCTCTCCTAAGTAAGTTTGCCCGCTGGGACTAGTCTAAGAAAGTGGA
ACTTGAACTGCCAACCCTTTTCCCTAAGGCCTAATACGAATTAGGTTCAACGTCGATTTCTTACT
TTCCCGATCGGCCCCTCCGTTCTCAGGCCGGGATCCGGGACATTACTACCACGGCTACTATTGAA
CCGAGCCTAAAAAGGAAAAAAGGAAGGGACTTAAGCGAGGACTTCATTGGCCATAGATAGTTAAG
GAGGATGGGGGCCAATCTCTTTCATGACCCATGGCCCCAGTCTCTCACTTAGTTAGCATTTCTAG
AATCAATGGAGTCAGGCCTCTGGAAAGAGAGAGGGGAGTTGTCTGTAATGCTTTCAATTCGGATG
GACAATATATCTTTCTTCGAGATGGTTAACCGCTTTTGATGAGAG
Done.