123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_031696
Parameters: 2 7 7 80 10 50 500
Length:  678653

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2857--2881	11	2.3	11	100	0	50	28	20	16	36	1.93
21044--21087	14	3.0	15	80	12	56	43	0	4	52	1.22
21044--21119	24	2.9	28	79	15	83	43	0	2	53	1.14
21097--21163	6	11.2	6	75	15	50	44	0	0	55	0.99
21062--21167	56	1.9	54	83	11	135	43	0	0	55	1.06
21054--21167	34	3.3	36	75	16	107	44	0	0	54	1.06
41801--41832	15	2.0	17	88	11	50	0	37	15	46	1.46
59564--59656	3	28.7	3	72	20	55	34	0	0	65	0.93
59587--59655	14	4.9	14	76	15	63	34	0	0	65	0.93
59599--59653	17	3.4	17	85	14	89	36	0	0	63	0.95
59564--59653	31	3.3	29	85	14	113	34	0	0	65	0.93
64086--64123	20	1.9	20	88	0	58	34	15	28	21	1.94
73586--73611	13	2.0	13	100	0	52	15	23	23	38	1.92
83920--84046	63	2.0	63	96	0	236	22	19	36	21	1.95
101172--101240	2	37.0	2	77	13	76	50	0	0	49	1.00
101169--101240	24	3.0	25	86	9	107	51	0	0	48	1.00
124433--124525	3	28.7	3	72	20	55	34	0	0	65	0.93
124456--124524	14	4.9	14	76	15	63	34	0	0	65	0.93
124468--124522	17	3.4	17	85	14	89	36	0	0	63	0.95
124433--124522	31	3.3	29	85	14	113	34	0	0	65	0.93
146171--146287	27	4.3	28	70	24	81	47	0	0	52	1.00
146177--146285	14	7.4	15	70	15	59	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159664--159718	25	2.2	26	90	3	85	43	5	3	47	1.44
171134--171180	16	2.8	17	83	6	60	42	0	0	57	0.98
171237--171338	37	2.7	37	76	18	104	50	2	2	44	1.32
201098--201190	3	28.7	3	72	20	55	65	0	0	34	0.93
201101--201190	31	3.3	29	80	17	95	65	0	0	34	0.93
201104--201182	14	5.8	14	75	19	78	64	0	0	35	0.94
201101--201155	17	3.4	17	85	14	89	63	0	0	36	0.95
235644--235750	30	3.5	31	76	10	114	55	0	0	44	0.99
235653--235707	28	2.0	28	86	10	78	52	0	0	47	1.00
235698--235750	24	2.3	24	78	9	58	56	0	0	43	0.99
274108--274148	16	2.5	17	88	7	59	12	36	9	41	1.76
284657--284690	10	3.4	10	87	0	50	41	0	29	29	1.57
284657--284691	15	2.3	15	95	0	61	40	0	31	28	1.57
342541--342597	24	2.4	24	97	2	107	15	31	12	40	1.85
342674--342706	8	4.1	8	92	0	57	39	33	0	27	1.57
347008--347051	22	2.0	22	100	0	88	22	18	18	40	1.91
364458--364490	16	1.9	18	88	11	52	15	24	9	51	1.72
377054--377099	15	3.1	15	81	15	51	45	8	32	13	1.73
380553--380595	17	2.6	16	75	7	50	34	16	0	48	1.46
391549--391597	23	2.1	23	100	0	98	28	18	16	36	1.92
394281--394334	22	2.4	22	81	6	63	50	0	0	50	1.00
394281--394336	16	3.6	16	80	9	71	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432945--432974	15	2.1	14	93	6	51	13	26	20	40	1.89
439515--439557	21	2.0	21	95	0	77	37	9	16	37	1.81
444976--445033	22	2.7	22	76	10	66	48	0	0	51	1.00
444976--445062	14	6.1	14	74	9	68	41	0	0	58	0.98
444981--445075	23	3.8	25	72	20	74	42	0	0	57	0.98
452224--452266	16	2.6	16	81	3	50	16	20	46	16	1.84
474096--474125	15	2.0	15	93	0	51	23	33	10	33	1.88
484502--484527	13	2.0	13	100	0	52	30	23	7	38	1.83
554519--554578	3	20.0	3	79	6	68	33	35	31	0	1.58
554518--554578	24	2.5	24	89	10	106	34	34	31	0	1.58
571635--571679	18	2.4	19	81	7	56	44	0	0	55	0.99
571704--571750	14	3.2	14	77	16	51	46	0	0	53	1.00
571704--571759	16	3.1	19	78	19	66	46	0	0	53	1.00
579582--579649	18	3.3	22	76	21	67	55	0	8	35	1.31
579609--579650	18	2.3	19	95	4	77	59	0	7	33	1.25
582070--582096	12	2.2	12	100	0	54	40	0	0	59	0.98
591145--591304	42	3.6	45	74	13	143	56	0	0	43	0.99
591147--591302	14	10.8	14	65	21	56	57	0	0	42	0.99
591208--591308	16	6.2	16	72	13	64	55	0	0	44	0.99
595269--595300	16	2.0	16	93	0	55	46	0	0	53	1.00
595275--595431	14	10.8	14	65	20	56	42	0	0	57	0.98
595286--595333	16	3.0	16	76	8	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595303--595427	42	2.9	43	76	13	123	44	0	0	56	0.99
595328--595432	27	3.4	32	77	17	98	45	0	0	54	0.99
595268--595433	46	3.8	45	71	15	114	43	0	0	56	0.99
595269--595434	45	3.7	47	71	19	140	43	0	0	56	0.99
609267--609293	8	3.4	8	100	0	54	62	0	0	37	0.95
613418--613471	27	1.9	29	85	7	76	18	22	42	16	1.89
624201--624260	19	3.3	19	73	13	54	58	0	0	41	0.98
624264--624296	10	3.3	10	87	12	50	30	0	0	69	0.88
630968--631029	30	2.1	30	100	0	124	16	27	40	16	1.89
648511--648585	41	1.9	40	86	13	111	60	1	0	38	1.06
648500--648604	45	2.5	41	79	11	115	57	0	0	41	1.05
659418--659452	18	1.9	18	88	0	52	54	34	11	0	1.37
662548--662592	20	2.3	19	92	7	81	40	15	11	33	1.83
663574--663617	22	2.0	22	82	8	54	11	0	11	77	1.00
668763--668867	24	4.4	24	70	13	74	33	0	0	64	1.06
668786--668992	6	31.1	7	68	23	85	39	1	0	58	1.14
668822--668935	16	7.4	14	70	19	52	38	0	0	60	1.03
668848--668935	37	2.2	38	73	15	81	40	0	1	57	1.06
668864--668940	8	10.1	8	69	23	51	45	0	0	54	0.99
668832--668944	20	5.8	20	73	16	96	39	0	0	59	1.04
668837--668962	20	6.3	21	70	18	83	39	0	1	58	1.07
668786--668995	10	20.0	11	62	23	62	39	1	0	58	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668787--668995	14	14.6	14	67	18	56	39	1	0	57	1.14
668891--668992	20	5.3	19	80	11	84	41	1	0	55	1.17
673559--673596	16	2.4	16	83	12	51	36	28	10	23	1.88
677744--677863	56	2.1	56	100	0	240	42	20	20	16	1.89

Tables:   1

The End!