Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_024515
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 105048
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Found at i:470 original size:22 final size:22
Alignment explanation
Indices: 431--472 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
421 GCTTTAGAGA
431 AGGTCATTGTTGTCTTTTTCAC
1 AGGTCATTGTTGTCTTTTTCAC
453 AGGTCATTGTTGTCTTTTTC
1 AGGTCATTGTTGTCTTTTTC
473 CTATTTCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.12, C:0.17, G:0.19, T:0.52
Consensus pattern (22 bp):
AGGTCATTGTTGTCTTTTTCAC
Left flanking sequence: Indices 1 -- 430
CATAGCTTCGCGTGCTTTTCGATCGATGATGGGACCGAAGACCAAAGGCCGCGGGTCTATATTCT
TTTTTTTTTCGCCGCCGCAGTCGGCCTCGGTCTTCGTGAACTCACCAAATGCTTCCGCGTTCTTC
TACGCCACTAACCTTTGAGCGGCCTTTTTCGTTTTATTCCTAGCCTTTTGGATCTAGAGTCAACG
AGGGCGCGAAGCGCCGCGTTTGATTCGATATGCTTACTAGCATATCGAATCCAGGGCTTATAGTT
TAATGGGTTCAAACGCACCGCTCATAACGGTGATATTGTAGGTTCGAGTCCTACTAAGCCTAGAT
TCTAGAAAACCAGAGAAAAAAAATTGGACTGAAATGGATGCGCGCGCCTGCGGCGCCCTCGAATA
CCCAAAATAGTTAATAGATTTTTTTGCTCCGCTTTAGAGA
Right flanking sequence: Indices 473 -- 972
CTATTTCTCATCATTAAATTACATAATGATAAAAAAAAATATATATATATTTTTTTTTACATAAT
GATAAAAAAAAATATATATATATTTTTTTGGGTGTATAGCTTAATTGGTAGAGCATTAGGCTTTT
AACTTAATGGTCGCAGGTTCAAGTCCTGCTATACCCAAATTCTAGAACCTGGCAGTTCATATGCA
CATCAAAATAGACATTGCACGTTGGCTCGTGACATTGCACGTTGGCTCGTCTAGTACGAGTCATT
ACGTGAAACTCAAATCTATATCTATTTTTTTATGTCTATATCTATTTTTTTATGTCTATATCTAT
TTTTTTATGTCTATATCTATTTTTTTATGTCTCTCCGCGCCTTCGGCTTATAATCTAAGCTCAGA
TAGTGAAAGACGCAGAGAGAGAAATTACAAGAAGATTTGTTGGCTTAGATTGGGCGAAGGCGCGA
AGCGCAGCTTGTCCTTTTAGGATGCGGCTTTGAAAAGAGAGAAGT
Found at i:542 original size:38 final size:38
Alignment explanation
Indices: 491--566 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
481 CATCATTAAA
491 TTACATAATGATAAAAAAAAATATATATATATTTTTTT
1 TTACATAATGATAAAAAAAAATATATATATATTTTTTT
529 TTACATAATGATAAAAAAAAATATATATATATTTTTTT
1 TTACATAATGATAAAAAAAAATATATATATATTTTTTT
567 GGGTGTATAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (38 bp):
TTACATAATGATAAAAAAAAATATATATATATTTTTTT
Left flanking sequence: Indices 1 -- 490
CATAGCTTCGCGTGCTTTTCGATCGATGATGGGACCGAAGACCAAAGGCCGCGGGTCTATATTCT
TTTTTTTTTCGCCGCCGCAGTCGGCCTCGGTCTTCGTGAACTCACCAAATGCTTCCGCGTTCTTC
TACGCCACTAACCTTTGAGCGGCCTTTTTCGTTTTATTCCTAGCCTTTTGGATCTAGAGTCAACG
AGGGCGCGAAGCGCCGCGTTTGATTCGATATGCTTACTAGCATATCGAATCCAGGGCTTATAGTT
TAATGGGTTCAAACGCACCGCTCATAACGGTGATATTGTAGGTTCGAGTCCTACTAAGCCTAGAT
TCTAGAAAACCAGAGAAAAAAAATTGGACTGAAATGGATGCGCGCGCCTGCGGCGCCCTCGAATA
CCCAAAATAGTTAATAGATTTTTTTGCTCCGCTTTAGAGAAGGTCATTGTTGTCTTTTTCACAGG
TCATTGTTGTCTTTTTCCTATTTCTCATCATTAAA
Right flanking sequence: Indices 567 -- 1066
GGGTGTATAGCTTAATTGGTAGAGCATTAGGCTTTTAACTTAATGGTCGCAGGTTCAAGTCCTGC
TATACCCAAATTCTAGAACCTGGCAGTTCATATGCACATCAAAATAGACATTGCACGTTGGCTCG
TGACATTGCACGTTGGCTCGTCTAGTACGAGTCATTACGTGAAACTCAAATCTATATCTATTTTT
TTATGTCTATATCTATTTTTTTATGTCTATATCTATTTTTTTATGTCTATATCTATTTTTTTATG
TCTCTCCGCGCCTTCGGCTTATAATCTAAGCTCAGATAGTGAAAGACGCAGAGAGAGAAATTACA
AGAAGATTTGTTGGCTTAGATTGGGCGAAGGCGCGAAGCGCAGCTTGTCCTTTTAGGATGCGGCT
TTGAAAAGAGAGAAGTGTTGTAGGTGTTACCAACTACTATTCCTATTTCATTTCTCTCCATGTGA
ACAATCTGCGCTTCGCGCCTGACCATAGTCAAAAGTAGGGGTCGG
Found at i:703 original size:20 final size:20
Alignment explanation
Indices: 678--717 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
668 CATCAAAATA
678 GACATTGCACGTTGGCTCGT
1 GACATTGCACGTTGGCTCGT
698 GACATTGCACGTTGGCTCGT
1 GACATTGCACGTTGGCTCGT
718 CTAGTACGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.25, G:0.30, T:0.30
Consensus pattern (20 bp):
GACATTGCACGTTGGCTCGT
Left flanking sequence: Indices 178 -- 677
TTGGATCTAGAGTCAACGAGGGCGCGAAGCGCCGCGTTTGATTCGATATGCTTACTAGCATATCG
AATCCAGGGCTTATAGTTTAATGGGTTCAAACGCACCGCTCATAACGGTGATATTGTAGGTTCGA
GTCCTACTAAGCCTAGATTCTAGAAAACCAGAGAAAAAAAATTGGACTGAAATGGATGCGCGCGC
CTGCGGCGCCCTCGAATACCCAAAATAGTTAATAGATTTTTTTGCTCCGCTTTAGAGAAGGTCAT
TGTTGTCTTTTTCACAGGTCATTGTTGTCTTTTTCCTATTTCTCATCATTAAATTACATAATGAT
AAAAAAAAATATATATATATTTTTTTTTACATAATGATAAAAAAAAATATATATATATTTTTTTG
GGTGTATAGCTTAATTGGTAGAGCATTAGGCTTTTAACTTAATGGTCGCAGGTTCAAGTCCTGCT
ATACCCAAATTCTAGAACCTGGCAGTTCATATGCACATCAAAATA
Right flanking sequence: Indices 718 -- 1217
CTAGTACGAGTCATTACGTGAAACTCAAATCTATATCTATTTTTTTATGTCTATATCTATTTTTT
TATGTCTATATCTATTTTTTTATGTCTATATCTATTTTTTTATGTCTCTCCGCGCCTTCGGCTTA
TAATCTAAGCTCAGATAGTGAAAGACGCAGAGAGAGAAATTACAAGAAGATTTGTTGGCTTAGAT
TGGGCGAAGGCGCGAAGCGCAGCTTGTCCTTTTAGGATGCGGCTTTGAAAAGAGAGAAGTGTTGT
AGGTGTTACCAACTACTATTCCTATTTCATTTCTCTCCATGTGAACAATCTGCGCTTCGCGCCTG
ACCATAGTCAAAAGTAGGGGTCGGAGTCGTTTGATAGCAACTCTGAATAACAGTATAGATATAGA
TATCTTCCTATTTAGCTCCCGCAAATTCATGTCCTATCTAGGATCTTTCCATCAAGAGCGGATTC
CCGTTCTTTCCGAGTCCCGCCAGTAATCTACGTCACCGTCAGCAT
Found at i:772 original size:20 final size:20
Alignment explanation
Indices: 747--829 Score: 166
Period size: 20 Copynumber: 4.2 Consensus size: 20
737 GAAACTCAAA
747 TCTATATCTATTTTTTTATG
1 TCTATATCTATTTTTTTATG
767 TCTATATCTATTTTTTTATG
1 TCTATATCTATTTTTTTATG
787 TCTATATCTATTTTTTTATG
1 TCTATATCTATTTTTTTATG
807 TCTATATCTATTTTTTTATG
1 TCTATATCTATTTTTTTATG
827 TCT
1 TCT
830 CTCCGCGCCT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.19, C:0.11, G:0.05, T:0.65
Consensus pattern (20 bp):
TCTATATCTATTTTTTTATG
Left flanking sequence: Indices 247 -- 746
CAGGGCTTATAGTTTAATGGGTTCAAACGCACCGCTCATAACGGTGATATTGTAGGTTCGAGTCC
TACTAAGCCTAGATTCTAGAAAACCAGAGAAAAAAAATTGGACTGAAATGGATGCGCGCGCCTGC
GGCGCCCTCGAATACCCAAAATAGTTAATAGATTTTTTTGCTCCGCTTTAGAGAAGGTCATTGTT
GTCTTTTTCACAGGTCATTGTTGTCTTTTTCCTATTTCTCATCATTAAATTACATAATGATAAAA
AAAAATATATATATATTTTTTTTTACATAATGATAAAAAAAAATATATATATATTTTTTTGGGTG
TATAGCTTAATTGGTAGAGCATTAGGCTTTTAACTTAATGGTCGCAGGTTCAAGTCCTGCTATAC
CCAAATTCTAGAACCTGGCAGTTCATATGCACATCAAAATAGACATTGCACGTTGGCTCGTGACA
TTGCACGTTGGCTCGTCTAGTACGAGTCATTACGTGAAACTCAAA
Right flanking sequence: Indices 830 -- 1329
CTCCGCGCCTTCGGCTTATAATCTAAGCTCAGATAGTGAAAGACGCAGAGAGAGAAATTACAAGA
AGATTTGTTGGCTTAGATTGGGCGAAGGCGCGAAGCGCAGCTTGTCCTTTTAGGATGCGGCTTTG
AAAAGAGAGAAGTGTTGTAGGTGTTACCAACTACTATTCCTATTTCATTTCTCTCCATGTGAACA
ATCTGCGCTTCGCGCCTGACCATAGTCAAAAGTAGGGGTCGGAGTCGTTTGATAGCAACTCTGAA
TAACAGTATAGATATAGATATCTTCCTATTTAGCTCCCGCAAATTCATGTCCTATCTAGGATCTT
TCCATCAAGAGCGGATTCCCGTTCTTTCCGAGTCCCGCCAGTAATCTACGTCACCGTCAGCATTA
ATTATCTATCTGTCTCTTTCATCAATTATCTAAATTATGCCAACCTATCTTATAAAACCCGGCCC
GGCAATATAGTCAATACTGGCGACACGATTAAGAAGCAGTGCTCT
Found at i:19116 original size:19 final size:20
Alignment explanation
Indices: 19074--19116 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
19064 GGATGTTGGT
* *
19074 CATGACTTTCGAAAAGTTCC
1 CATGACTATCGAAAAGTTCA
*
19094 CATGACTAT-GAAAATTTCA
1 CATGACTATCGAAAAGTTCA
19113 CATG
1 CATG
19117 GAGGAGTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
CATGACTATCGAAAAGTTCA
Left flanking sequence: Indices 18574 -- 19073
GAGCTAAAAATGCATTTTTTTTCTTTTTTCTCTCTCTTTTTAATTTCTCCATTTTCAAATTTATG
GGAGACTTGTCATATTCAGAATCTTTCTGTGGTGTGCTTTGTTTTTCATTATCTCGTACATTTTT
TTTATCATTTGAATATAGGCGCGATACGTGGGCAAACGAGGAGCGTGGGCTTGGAATGGAAGAAA
AGGGAAACCCGCGTAGGCGGGCACAGAGAGGAAAGCGCCAAGCGCTTTGTTGGCCTAGCGGAAGA
AAGAAACAAAGAAATAAAAAGAAAGAAAATTTTTCCTTTTTATTTCTTTCAAATAAATCAAAAAT
ATTTTTGATTTATTTGCTGCAATTTTCAAAAACCTTCGGCTTCAACGAAAAAGCCAAAATTTTGG
CTTTTTATTCTCTGCTTGCTTCTTCGCAAGCTTATTCTCTCGTCCTTGAAAATATTTGGAATAGA
TTTTTTATTGTTCGCGCCTCACCAAAAAGACTGATGGATGTTGGT
Right flanking sequence: Indices 19117 -- 19616
GAGGAGTTTGCATCTTTATTATGGGTGTTATTCTGTCGTGCGACCCGGCAGCTTATGCGCGACCA
TCTCGTGTTTAAGCTCACGCCATATGGGCGTGAACTCTGGTTGAATTCGGGTTCTAAATCCCGCC
GCTGAGATGCTCAGTCGACTCTTGAACCTTGATAGGAAGACGGCTTCTTCCCAAATTAGTGCAAA
AGGTTCAAGGACTTAGGATGAACTTAATGTGAATGGGTATAAGCTTCGCTGCTCAAAAACACCCA
GTATTGACCACACTGAGAGACTTGCCAATAGCAAAAAAGGCCGCGGGTGACGCTAGTTGGCGAAA
TGGCGTTAAGCATTCCTGGCAATACGGAAAGAGAGGTCGTGATGATATCATCTACGTTCGTACTG
TCCCTTGTGGAGTAAATCTCACATCCAAAAATCTAACCAGGGAACGGAATAATTCCCATTAAGTT
CCAGTAAAACTGGCAGGCCAGCCGGGCCGTAAGCTAGTGGGAACA
Found at i:33257 original size:14 final size:14
Alignment explanation
Indices: 33238--33265 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
33228 TCGGTTCTGT
33238 TTGATAGTAACACA
1 TTGATAGTAACACA
33252 TTGATAGTAACACA
1 TTGATAGTAACACA
33266 GAAAAGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
TTGATAGTAACACA
Left flanking sequence: Indices 32738 -- 33237
GAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCTACACACGTGCTACAA
TGGCAATTACAATAGGAAGCGAGGCTTGAAGGCGGAGCGAATCCAGAAAGATAGCCTTAGTTCGG
ATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCG
GTGAATATGTACTCAGGCCCTGTACACACCGCCCGTCACACCATGGGAATTGGCTTCGCCCGAAG
CATCAAACCAAGGATCACCCATTCTTTCAGTATTCTACGCCGTTGGTGAGTGTGGTCTACCAGAG
GAATTGGTGGTCTGATGTGGGATACCAAGGTGGGGCCTTTGACTGAGGTGAAGTCGTAACAAGGT
AGCCGTAGGGGAACCTGTGGCTGGATTGACTCCTTTTTTTCGACAAAAGAGAGAAAAGAAAAAGA
CTCCAAAAAAGAAACATCTATCTAGTTTCTGTCGTTCGGTTCTGT
Right flanking sequence: Indices 33266 -- 33765
GAAAAGCAAAAAAAAAGAGTAGATACGCCCTGTGCTCTTCATTCTCTGGACTAGGATTGCATGGC
CCGGAGCAGCATAATGCGATAGTAGCAAAGACTTGAGTGAATTTTTGGTCTATGTCAGTTAGTGA
GAGCCTACCCCGCAGCCTTTCCAATTATGCCTGTGAATGCCCCTACTATTACACAATAACGGCTT
CAGTCGCTATTATGAATATCACCAAGGCGCAGGGCGCTCTAATAATCTACTCCGTTTGAACTTCA
TACATAAACAGTTACTTCTATCCCCATCGGGGCCAGGTTAAAGGGCGCATCAGGCCAATTATCAT
CCAACAGCCAGGGAGCGGCAGATTAGTAGAACAGCGGATTCATAATTCGCATGTCGGAATAGTTT
AGTCGGTTAGAACAGCGGGATCATAATTCGCACACGGGGGTTCAAATCCCTCTTCCGATCCCTCT
TCTGATAGGAACTTTCGGATAAGAATTGAACCTACAACAAAGGAG
Found at i:33941 original size:25 final size:25
Alignment explanation
Indices: 33913--33962 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
33903 GATAATTCAT
33913 TAAAATACATAGAGACTCAAATTGC
1 TAAAATACATAGAGACTCAAATTGC
33938 TAAAATACATAGAGACTCAAATTGC
1 TAAAATACATAGAGACTCAAATTGC
33963 ATAGAACGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (25 bp):
TAAAATACATAGAGACTCAAATTGC
Left flanking sequence: Indices 33413 -- 33912
TTTCCAATTATGCCTGTGAATGCCCCTACTATTACACAATAACGGCTTCAGTCGCTATTATGAAT
ATCACCAAGGCGCAGGGCGCTCTAATAATCTACTCCGTTTGAACTTCATACATAAACAGTTACTT
CTATCCCCATCGGGGCCAGGTTAAAGGGCGCATCAGGCCAATTATCATCCAACAGCCAGGGAGCG
GCAGATTAGTAGAACAGCGGATTCATAATTCGCATGTCGGAATAGTTTAGTCGGTTAGAACAGCG
GGATCATAATTCGCACACGGGGGTTCAAATCCCTCTTCCGATCCCTCTTCTGATAGGAACTTTCG
GATAAGAATTGAACCTACAACAAAGGAGGCAAAAAAAAGATATATATATCGTTTTTTTGCTGGTC
ACTAACCTTATCCTAAATCTCCTTCTTCTATCACAGAACACGGTAAAGAAAGATTTACCATGGAT
AACTACAAATGCAACATAATCAATCAATCATCCTAGATAATTCAT
Right flanking sequence: Indices 33963 -- 34462
ATAGAACGGCGGCATCACCTTTAGGGCGGTAAACCACAAAGAGAAGCGGTCGTATCTTATCCACA
AGGCCGCAGGCCACGCGTCGGCTACATCAGAACAAATCTAATTATTAATTAGAACAACCATAAAT
AAGGGCGCTTCTCAGCTTGGTAAGAAATCGAAATAAAGTCAAGTTGGCGATGGCGGCGATGGCGC
CTTCGGCCCTGTGATTGGTGCCTTCGGCCCTGTGATTATTCTCGCCGAAGAGCACCTGTGTAGTC
CACTTCGGCGGCGCTTCGCCCTTGTTGACTCTATTCATCAATTATTCCAAAACGCTAAACAAAGT
GATGAACAATCAATCGCGGGGCCGAAGGTTCTAGGGGACTAAGCTCGCCAAATAGTACTATGCAA
CACTCGGCGCCCAAGGATCCATCATCATACAGACTCGCGACCAAAAAATCACATATGTCTAATAA
AGAACTCTACTTGGGGCGGGCGGGGAACTGCTGCGCAAAAAGAAA
Found at i:41529 original size:17 final size:17
Alignment explanation
Indices: 41507--41600 Score: 96
Period size: 17 Copynumber: 6.0 Consensus size: 17
41497 AACCACTTAA
41507 TAACTAACACAAATAGT
1 TAACTAACACAAATAGT
41524 TAACTAACACAAATAGT
1 TAACTAACACAAATAGT
**
41541 TAACT-ATTC---TAGT
1 TAACTAACACAAATAGT
41554 TAACTAACACAAATAGT
1 TAACTAACACAAATAGT
**
41571 TAACT---A-TTATAGT
1 TAACTAACACAAATAGT
41584 TAACTAACACAAATAGT
1 TAACTAACACAAATAGT
41601 AATGGATGAT
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
13 19 0.31
14 3 0.05
16 3 0.05
17 36 0.59
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.30
Consensus pattern (17 bp):
TAACTAACACAAATAGT
Left flanking sequence: Indices 41007 -- 41506
TGAAAAAAAATCTCCATATATTCTTTTATTTCATTGTAGTGGCTTGACAAGTCGACAATGGCGAC
AACTCAAAAATCTATTGTGTGCCTTTCGAGGTAGAACTTTATTTCGACCAAATTACAAGAGAAAA
CTACCACATAAAAACAAGCAAGGTGGTTTTATTGAGCAGCTTGCTTCTAGCGCAGGTCCCACTTG
TATCTTGTACTTGACCAAAGAAGCACCAGATAATACATGGTCACAGTTATTACCTTTGGCCTCAT
ACAACCAAAATCTAGTTTTATTATACGGACAACTTCAATCTACTTTAGTCAATCATATGGATATA
AAAAAAGCGGCTAATTTAGAAATAACATCAGTATTTCAACAACTTTTTGAGCTCATTTTTTACCC
ATATAATTCTCTATGTTCTTGTCTGAACAAGCCAATTTATGCTCTACCCACTATACAAGAAAAGA
CGCAAGGAGGGTTGCTTAGTCACCAGAAGATAACCAACCACTTAA
Right flanking sequence: Indices 41601 -- 42100
AATGGATGATTTGTTTTTTTGGCGAATAACGGGATTTGAACCCGTGTTTTCAAATTCACAATCTG
ACACTTTCACCTATTAAGTTATACTCGCCCTTTTTTCCAATTCAGACATTAAAATACTCGCTATC
GGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCATTTTCACCAAGC
GAGTATACTCACTATCGGACTTGAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTT
ACCATTTTCACCAAGTGAGCTTAGGCAAGCGAAGCGCAGAATCGAAACACAATAACACAATCTTT
TTCTTTAACACAATCCCCATCTTTCGTTTCCCTCTTGCCATTTCATTTTATAGACATCTCCGGCT
TATCCCGGCTCGGCTGAATCTGCGGCATTTTTTCAAATATTTGAAAAATCTATAGTCCTCTGTCT
CAAGGTGTGTAGAGACTCCTTTTTTATTGATTTATACTAATCTAT
Found at i:41556 original size:30 final size:30
Alignment explanation
Indices: 41519--41600 Score: 155
Period size: 30 Copynumber: 2.7 Consensus size: 30
41509 ACTAACACAA
41519 ATAGTTAACTAACACAAATAGTTAACTATT
1 ATAGTTAACTAACACAAATAGTTAACTATT
*
41549 CTAGTTAACTAACACAAATAGTTAACTATT
1 ATAGTTAACTAACACAAATAGTTAACTATT
41579 ATAGTTAACTAACACAAATAGT
1 ATAGTTAACTAACACAAATAGT
41601 AATGGATGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (30 bp):
ATAGTTAACTAACACAAATAGTTAACTATT
Left flanking sequence: Indices 41019 -- 41518
TCCATATATTCTTTTATTTCATTGTAGTGGCTTGACAAGTCGACAATGGCGACAACTCAAAAATC
TATTGTGTGCCTTTCGAGGTAGAACTTTATTTCGACCAAATTACAAGAGAAAACTACCACATAAA
AACAAGCAAGGTGGTTTTATTGAGCAGCTTGCTTCTAGCGCAGGTCCCACTTGTATCTTGTACTT
GACCAAAGAAGCACCAGATAATACATGGTCACAGTTATTACCTTTGGCCTCATACAACCAAAATC
TAGTTTTATTATACGGACAACTTCAATCTACTTTAGTCAATCATATGGATATAAAAAAAGCGGCT
AATTTAGAAATAACATCAGTATTTCAACAACTTTTTGAGCTCATTTTTTACCCATATAATTCTCT
ATGTTCTTGTCTGAACAAGCCAATTTATGCTCTACCCACTATACAAGAAAAGACGCAAGGAGGGT
TGCTTAGTCACCAGAAGATAACCAACCACTTAATAACTAACACAA
Right flanking sequence: Indices 41601 -- 42100
AATGGATGATTTGTTTTTTTGGCGAATAACGGGATTTGAACCCGTGTTTTCAAATTCACAATCTG
ACACTTTCACCTATTAAGTTATACTCGCCCTTTTTTCCAATTCAGACATTAAAATACTCGCTATC
GGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCATTTTCACCAAGC
GAGTATACTCACTATCGGACTTGAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTT
ACCATTTTCACCAAGTGAGCTTAGGCAAGCGAAGCGCAGAATCGAAACACAATAACACAATCTTT
TTCTTTAACACAATCCCCATCTTTCGTTTCCCTCTTGCCATTTCATTTTATAGACATCTCCGGCT
TATCCCGGCTCGGCTGAATCTGCGGCATTTTTTCAAATATTTGAAAAATCTATAGTCCTCTGTCT
CAAGGTGTGTAGAGACTCCTTTTTTATTGATTTATACTAATCTAT
Found at i:41858 original size:81 final size:81
Alignment explanation
Indices: 41719--41875 Score: 262
Period size: 81 Copynumber: 1.9 Consensus size: 81
41709 AGACATTAAA
* *
41719 ATACTCGCTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCA
1 ATACTCACTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCA
41784 TTTTCACCAAGCGAGT
66 TTTTCACCAAGCGAGT
* *
41800 ATACTCACTATCGGACTT-GAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACC
1 ATACTCACTATCGGA-TTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACC
41864 ATTTTCACCAAG
65 ATTTTCACCAAG
41876 TGAGCTTAGG
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
81 69 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (81 bp):
ATACTCACTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCA
TTTTCACCAAGCGAGT
Left flanking sequence: Indices 41219 -- 41718
AAGAAGCACCAGATAATACATGGTCACAGTTATTACCTTTGGCCTCATACAACCAAAATCTAGTT
TTATTATACGGACAACTTCAATCTACTTTAGTCAATCATATGGATATAAAAAAAGCGGCTAATTT
AGAAATAACATCAGTATTTCAACAACTTTTTGAGCTCATTTTTTACCCATATAATTCTCTATGTT
CTTGTCTGAACAAGCCAATTTATGCTCTACCCACTATACAAGAAAAGACGCAAGGAGGGTTGCTT
AGTCACCAGAAGATAACCAACCACTTAATAACTAACACAAATAGTTAACTAACACAAATAGTTAA
CTATTCTAGTTAACTAACACAAATAGTTAACTATTATAGTTAACTAACACAAATAGTAATGGATG
ATTTGTTTTTTTGGCGAATAACGGGATTTGAACCCGTGTTTTCAAATTCACAATCTGACACTTTC
ACCTATTAAGTTATACTCGCCCTTTTTTCCAATTCAGACATTAAA
Right flanking sequence: Indices 41876 -- 42375
TGAGCTTAGGCAAGCGAAGCGCAGAATCGAAACACAATAACACAATCTTTTTCTTTAACACAATC
CCCATCTTTCGTTTCCCTCTTGCCATTTCATTTTATAGACATCTCCGGCTTATCCCGGCTCGGCT
GAATCTGCGGCATTTTTTCAAATATTTGAAAAATCTATAGTCCTCTGTCTCAAGGTGTGTAGAGA
CTCCTTTTTTATTGATTTATACTAATCTATCTTAGATCCGAGATAGTGCCGAAAAAATGATTCAA
TTTAATCTAACCATGGTTGCCTTGGCAATGGCAATGACTTTTATACAATATGCAGAATACTCCAA
AACCTCTATTTAGAACTGAAAGAAGATAATGCTTTTTTATGAGAAAATCATAAAGTGCAAAGGTT
AAAATTTTGAGCTTTGTTTTACGTAGTTTCGCCATCTATATAATAGGATATAGTAGAAAATAATA
AGTTGGCGAGGAAGTAAAAATATATATATATCTATATATATATAT
Found at i:42357 original size:2 final size:2
Alignment explanation
Indices: 42350--42379 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
42340 GGAAGTAAAA
*
42350 AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42380 TTTTTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 41850 -- 42349
CTGTCGTGTTTACCATTTTCACCAAGTGAGCTTAGGCAAGCGAAGCGCAGAATCGAAACACAATA
ACACAATCTTTTTCTTTAACACAATCCCCATCTTTCGTTTCCCTCTTGCCATTTCATTTTATAGA
CATCTCCGGCTTATCCCGGCTCGGCTGAATCTGCGGCATTTTTTCAAATATTTGAAAAATCTATA
GTCCTCTGTCTCAAGGTGTGTAGAGACTCCTTTTTTATTGATTTATACTAATCTATCTTAGATCC
GAGATAGTGCCGAAAAAATGATTCAATTTAATCTAACCATGGTTGCCTTGGCAATGGCAATGACT
TTTATACAATATGCAGAATACTCCAAAACCTCTATTTAGAACTGAAAGAAGATAATGCTTTTTTA
TGAGAAAATCATAAAGTGCAAAGGTTAAAATTTTGAGCTTTGTTTTACGTAGTTTCGCCATCTAT
ATAATAGGATATAGTAGAAAATAATAAGTTGGCGAGGAAGTAAAA
Right flanking sequence: Indices 42380 -- 42879
TTTTTTTTTATTCTGTGGTCTTGCAATTGTGTTCAAAGCTAAGGGCCCAGCCCTCTATTTCCTAT
CGTTTCCGTCAATCAAATAAAGGCTTCGTTTAGCCAGGGGTTATTCTTCTCCTCTGCTGAATTGC
TTCGCGAACGAAGTAGGCTAAAAAAATAAAGATTTTTTTTGTCCGCCTTATTCTCTTCTATCACT
CAAATGGCCCTATGAGTTTTTGCCAAGCAAAATATTGATTGCATAAGCCATCGGCTTCCACAAAG
ACCAATAAAGTGATAACAGCAGCGTAGCCAAGCTTGTTCCGCCCGCTGTGCGCAAAAAAAGAGTT
TTTTCCGGCACTTAGTAAAACAAAATTTTGACACTCCTTGCGTTGCGGATGGTGAGTGGATTACT
AATAAAATAGAGTGATCCAAGATGACCTCTCTTTCAATTTCAATTATGTCATTATATAGTAATGG
CATGCGGCGAACTCTATTGGATGCGCCAAAAACTTGATTTGTTGG
Found at i:49507 original size:12 final size:12
Alignment explanation
Indices: 49490--49581 Score: 159
Period size: 12 Copynumber: 7.8 Consensus size: 12
49480 CAAGCAAAAG
49490 AAATAGATTAAA
1 AAATAGATTAAA
*
49502 AAATAGATTAAG
1 AAATAGATTAAA
49514 AAATAGATTAAA
1 AAATAGATTAAA
*
49526 AAATAGATTAAG
1 AAATAGATTAAA
49538 AAATAGATTAAA
1 AAATAGATTAAA
49550 AAATAGATTAAA
1 AAATAGATTAAA
49562 AAATAGATT-AA
1 AAATAGATTAAA
49573 AAATAGATT
1 AAATAGATT
49582 TTTTCAATTT
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
11 11 0.14
12 65 0.86
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (12 bp):
AAATAGATTAAA
Left flanking sequence: Indices 48990 -- 49489
GGTAATCGATTCTATTGCTTTTTAAATAAGCGCTGGTTTTTTGATAAACTTTTCAATGACTTTAT
AGTCAGGTTCTTTTTGCGTTTTGGATATGAAGTTTCATTTAAAGTTTTAGACAAGGGTGCTATTG
AAATCCTGGGACCTTATGGAATTTCGTACACATTTCGAAAATTAGCCAAGCAGATAAGTAAACTT
CAAAGTGGTTTTGTTTATCATTATGCTTTTGTAATGTTGATCGGCTTAACCATATTTATTACCAT
AATAGGTCCGTGGGATTTTATTTCTTTCTGGGTAGATAATCGATTGTATTTTATTTACATAGTGA
GTTTTCTATTTATTCATTTTGAAAACGACATTAGCACGAACTAAAGGGGCATACTTCCTTATATA
ATACCATGAAACTTTGAGGGACGCAATGATAAGCCAGTGCTACGCCCTTTTTTTGGCCCCGCCGA
GAGGGAGGGCTGAGGCCCTTTATAAGAAAGCCTAACAAGCAAAAG
Right flanking sequence: Indices 49582 -- 50081
TTTTCAATTTCTTTCTATAGATTTTTTAAATGTCTTTCTATAGATTTTTTCAAATGTCTTTCTAT
AGATTTTTCAAATGTCTTTCTATAGATTTTTCAAACCCTAGAGCATTGAACAAAGCGGTGAAAGG
CGAAGCATGCAATTACATAGTATGCGCGTATAAAAGCTCATCAAGTTATGCAATTATTGCGGGCT
TTATGTATAGAAGTGCAGGGCGAAGCTGATGATATACCCATAAGGCCTCTATGGCTGGAAAGCCG
GGAGGAAATATGGACCCGCGGCCTGCGGAGAAAGCTGCGTCCCCGGGATCTTCTGGAAAAAGAGT
CAACATTTATGTTACAATTTTTAGCTCCATTTTATTCCAATCTCAGTGGTCTCATTCTGTGTCCT
TTATTAGGAAGCATCATTCTTTTCGTTATCCCCGATCCCAGAATACGACTGATACGAAGTATTGG
TTTGTGCACCTCTTTGATTACTTTCTTATATTCCCTTCTTTTCTG
Found at i:49601 original size:23 final size:24
Alignment explanation
Indices: 49575--49681 Score: 177
Period size: 23 Copynumber: 4.6 Consensus size: 24
49565 TAGATTAAAA
*
49575 ATAGATTTTTTC-AATTTCTTTCT
1 ATAGATTTTTTCAAATGTCTTTCT
49598 ATAGATTTTTT-AAATGTCTTTCT
1 ATAGATTTTTTCAAATGTCTTTCT
49621 ATAGATTTTTTCAAATGTCTTTCT
1 ATAGATTTTTTCAAATGTCTTTCT
49645 ATAGA-TTTTTCAAATGTCTTTCT
1 ATAGATTTTTTCAAATGTCTTTCT
49668 ATAGA-TTTTTCAAA
1 ATAGATTTTTTCAAA
49682 CCCTAGAGCA
Statistics
Matches: 81, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
23 64 0.79
24 17 0.21
ACGTcount: A:0.27, C:0.11, G:0.07, T:0.54
Consensus pattern (24 bp):
ATAGATTTTTTCAAATGTCTTTCT
Left flanking sequence: Indices 49075 -- 49574
TTGGATATGAAGTTTCATTTAAAGTTTTAGACAAGGGTGCTATTGAAATCCTGGGACCTTATGGA
ATTTCGTACACATTTCGAAAATTAGCCAAGCAGATAAGTAAACTTCAAAGTGGTTTTGTTTATCA
TTATGCTTTTGTAATGTTGATCGGCTTAACCATATTTATTACCATAATAGGTCCGTGGGATTTTA
TTTCTTTCTGGGTAGATAATCGATTGTATTTTATTTACATAGTGAGTTTTCTATTTATTCATTTT
GAAAACGACATTAGCACGAACTAAAGGGGCATACTTCCTTATATAATACCATGAAACTTTGAGGG
ACGCAATGATAAGCCAGTGCTACGCCCTTTTTTTGGCCCCGCCGAGAGGGAGGGCTGAGGCCCTT
TATAAGAAAGCCTAACAAGCAAAAGAAATAGATTAAAAAATAGATTAAGAAATAGATTAAAAAAT
AGATTAAGAAATAGATTAAAAAATAGATTAAAAAATAGATTAAAA
Right flanking sequence: Indices 49682 -- 50181
CCCTAGAGCATTGAACAAAGCGGTGAAAGGCGAAGCATGCAATTACATAGTATGCGCGTATAAAA
GCTCATCAAGTTATGCAATTATTGCGGGCTTTATGTATAGAAGTGCAGGGCGAAGCTGATGATAT
ACCCATAAGGCCTCTATGGCTGGAAAGCCGGGAGGAAATATGGACCCGCGGCCTGCGGAGAAAGC
TGCGTCCCCGGGATCTTCTGGAAAAAGAGTCAACATTTATGTTACAATTTTTAGCTCCATTTTAT
TCCAATCTCAGTGGTCTCATTCTGTGTCCTTTATTAGGAAGCATCATTCTTTTCGTTATCCCCGA
TCCCAGAATACGACTGATACGAAGTATTGGTTTGTGCACCTCTTTGATTACTTTCTTATATTCCC
TTCTTTTCTGGATACAATTTGATAATTCTACAGCCAAATTTCAATTCGTGGAAACCATTCGATGG
CTTCCTTATTCAAACATCAATTTTTATATAGGTATAGATGGTATC
Found at i:49649 original size:47 final size:47
Alignment explanation
Indices: 49575--49681 Score: 182
Period size: 47 Copynumber: 2.3 Consensus size: 47
49565 TAGATTAAAA
* *
49575 ATAGATTTTTTC-AATTTCTTTCTATAGATTTTTTAAATGTCTTTCT
1 ATAGATTTTTTCAAATGTCTTTCTATAGATTTTTCAAATGTCTTTCT
49621 ATAGATTTTTTCAAATGTCTTTCTATAGATTTTTCAAATGTCTTTCT
1 ATAGATTTTTTCAAATGTCTTTCTATAGATTTTTCAAATGTCTTTCT
49668 ATAGA-TTTTTCAAA
1 ATAGATTTTTTCAAA
49682 CCCTAGAGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
46 21 0.36
47 37 0.64
ACGTcount: A:0.27, C:0.11, G:0.07, T:0.54
Consensus pattern (47 bp):
ATAGATTTTTTCAAATGTCTTTCTATAGATTTTTCAAATGTCTTTCT
Left flanking sequence: Indices 49075 -- 49574
TTGGATATGAAGTTTCATTTAAAGTTTTAGACAAGGGTGCTATTGAAATCCTGGGACCTTATGGA
ATTTCGTACACATTTCGAAAATTAGCCAAGCAGATAAGTAAACTTCAAAGTGGTTTTGTTTATCA
TTATGCTTTTGTAATGTTGATCGGCTTAACCATATTTATTACCATAATAGGTCCGTGGGATTTTA
TTTCTTTCTGGGTAGATAATCGATTGTATTTTATTTACATAGTGAGTTTTCTATTTATTCATTTT
GAAAACGACATTAGCACGAACTAAAGGGGCATACTTCCTTATATAATACCATGAAACTTTGAGGG
ACGCAATGATAAGCCAGTGCTACGCCCTTTTTTTGGCCCCGCCGAGAGGGAGGGCTGAGGCCCTT
TATAAGAAAGCCTAACAAGCAAAAGAAATAGATTAAAAAATAGATTAAGAAATAGATTAAAAAAT
AGATTAAGAAATAGATTAAAAAATAGATTAAAAAATAGATTAAAA
Right flanking sequence: Indices 49682 -- 50181
CCCTAGAGCATTGAACAAAGCGGTGAAAGGCGAAGCATGCAATTACATAGTATGCGCGTATAAAA
GCTCATCAAGTTATGCAATTATTGCGGGCTTTATGTATAGAAGTGCAGGGCGAAGCTGATGATAT
ACCCATAAGGCCTCTATGGCTGGAAAGCCGGGAGGAAATATGGACCCGCGGCCTGCGGAGAAAGC
TGCGTCCCCGGGATCTTCTGGAAAAAGAGTCAACATTTATGTTACAATTTTTAGCTCCATTTTAT
TCCAATCTCAGTGGTCTCATTCTGTGTCCTTTATTAGGAAGCATCATTCTTTTCGTTATCCCCGA
TCCCAGAATACGACTGATACGAAGTATTGGTTTGTGCACCTCTTTGATTACTTTCTTATATTCCC
TTCTTTTCTGGATACAATTTGATAATTCTACAGCCAAATTTCAATTCGTGGAAACCATTCGATGG
CTTCCTTATTCAAACATCAATTTTTATATAGGTATAGATGGTATC
Found at i:52967 original size:15 final size:15
Alignment explanation
Indices: 52947--52976 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
52937 CGCGTCTGGT
52947 AAAGAGAAAAAAAAA
1 AAAGAGAAAAAAAAA
52962 AAAGAGAAAAAAAAA
1 AAAGAGAAAAAAAAA
52977 GATTTTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAGAGAAAAAAAAA
Left flanking sequence: Indices 52447 -- 52946
ACCGCAGGGAACCATAGCATGGGTACCATCCGCGTTTCGTCGCAAGTACAATCGTACGCATAGGA
GTAAGGTAACTTCCCCCAACGAAAGGCGGGGCCGGAAGACACGTGGGCTCGAACGCTACTCACGT
GCGAGCAACCCTCCGGACGTAACTGTAATGGACAGAAAAAGTGGTACACGTGACTAAACGACAAG
CAAACGGCCAAACGCGCAAACTAGGGATCATCCAAATGGACTCGATAGGGACCGGCTTTGATAAA
AGCAGGGCGTAGCAAATTTGCTACGATTTTCGGAAAAAAATACTTTTGAAAATCCCTTGGAGACC
AAGGCTTTAGCCAAAATGTACGGGTGACAGATCCTTCCATAATGTACCCTGAGAAATACACCGGG
CAATTAATGTTAAGCATACGACGATGCCCTTTAGAGTGAAAGCCTCGGAGGAAAAGGAGGTAGGT
GATAATGCGCTGTACTTTCCAGACGCGGCGCGCGCCGCGTCTGGT
Right flanking sequence: Indices 52977 -- 53476
GATTTTTTTCGCTGAGTGCTACTACTTTCAGTCCCATATTAATGAGACTTCCTACGTCAATATAC
AACCCTGGATAAAAGACTAAGGCAATAGCTAGGTAAAACAGCGAATTTGATTAATCTACCTACAA
ACGTAGCCAATGAAGGAATGGAAGACAATGTAGCATAACGCCAACTCCGAAATGATCAGTGTTTT
ATTTTGTTCATGCAGGCCCGGCCTTAGAGGGTTTCGGTCCGTAAACCTGAAAAAGTTATCATGGA
CGAGCCACATGCGGGGAAACTCGCACGTGTGGTTCTGACCGGGGGGGAGAAAAGCACCCTATCGG
TATCTAATAACTATCTTATTGGTCGCTTCTAGCACACCTCTAACTGTTGCCAATTTATTCTATAA
TAATTTAATAATAGACAATTTTACCTATTTTTGCCAAATCTTTCTATTAATAAGTACGGCTAGCA
CTATAGTTATGTGTCTGGGTTATTTTAAAGAAGAGAGTTTGAATG
Found at i:57751 original size:1 final size:1
Alignment explanation
Indices: 57745--57777 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
57735 GTCAAGCTGC
57745 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
57778 AGGAGTATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 57245 -- 57744
ATGCTCGAAGCGGCAGCCAAACGACGTATTAACAAAAAAAGCATGAGCTTAGATCAATGTTTAGC
TGATGAGATATTGGATGCTTCCCGAAAGATGGGGATTGCACGTAAAAAAAGGGATGATCTTCATA
AACTGGCTCAAGCCAATCGTAGTTTTTCGCATTATAGATGGTGGTAAACTATTTGAGGTAGGAGA
AAAAGGGGATCAGGCGACGAGGGAGGCGAAGCGCATTATTTAGAAACTTTTCTGCGCTTCGCCCC
CTTTTGCCTCGTCCCATTCGGGGATTGGGGAGAGAAGAAAAAGGCCAAGCTTCGTTATGCGCTTG
GCTACTCATTTAGAAGGATCTCATGGCTTTTATCATAATGAAACTATTCGTCCCTTCTTAGAATC
AGACATTAAGCGTCTCAGCTCAAGATAAGTTTGCCGCATCAGAGAAGAGTTGCGAGAAAGTGGGC
GCAGCAAAAATCTATGGCGACCAAAGAGAACTTTTGTCAAGCTGC
Right flanking sequence: Indices 57778 -- 58277
AGGAGTATCTGCGGCCTCTTTGTTTCGGTAGGAATTAGTCCCCGGGGTCCCGGGACATTCGTTTC
CGCCAACGGGGAACTCTACAAGAGGCCGCAGGGCGCAGCAAAATATATATATATATAGAATATTT
TTTTTTTCGTAGCTTTTTGCATCCCGCGCGTTCAAAGGTCTTCGACCATCGGTGTGCATTATTCT
GCGTCATCAAAAGCAAATCCAGCTTTTTTTATTATGGTTGACGATGACGCGCTTAAAAAGTAAAG
AAGTGATGTAGCAACTGTTTTGATGCTCCCTACACCAGTCTTTTAATGAAGGTTTATAGCATCAT
TTAAGTAAATACAGATTAAAATAGTAAAAACATAAGCTTGTAATATAGCAACACCTAATTCCAAA
CCAGTTAATGCGAATACTATTAAAAAAGGAGCAAGATGCGCTAAATACATAATACCCCCCATAGA
TAGCATAGTCCAAGCAAACCCGCTTAGAATCTTTACTAAACTATG
Found at i:72413 original size:24 final size:24
Alignment explanation
Indices: 72385--72430 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
72375 GCGGTATGGC
72385 TGGCATGTGGCCGCGAATGCGGCA
1 TGGCATGTGGCCGCGAATGCGGCA
72409 TGGCATGTGGCCGCGAATGCGG
1 TGGCATGTGGCCGCGAATGCGG
72431 GGCAGGCGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.15, C:0.24, G:0.43, T:0.17
Consensus pattern (24 bp):
TGGCATGTGGCCGCGAATGCGGCA
Left flanking sequence: Indices 71885 -- 72384
TAGGGCATATCCTGGTGCCCAATCTCCAGTCCGCGTCAATGGAGTCAATCGCCCAGAGGTAGCGT
TGCCGCAATGCGCGTGGAAAAGCATCTGGGAAACCAAGTCATGACCCATAAAAGGACGACTTGGA
AGATACTGTTGGGATTGATGAGGCTGACGAATCCGAATGACGTAGCTGCTGAACGACAGCATTCA
CCAAGCCAGCGGGGAACGACTTGGTCCTGGAATCGGTTCTTTTGGTAGGTATAACGGGGGCCGGA
GACGGAAAACAAGGGCGAAGCAGGGGCATTCTCAGTAAGGGAATAAGACTATGCGGACATCTTAC
CTCGACGAACAGGTAGAAAAAGTCGAAAACGCAATCACGGGATCGACCTACTCTCTAGCGAGAGG
GTCGGCGGAGCCGCTATAGTAAGTCAATAGGGAAATCGACCGAGCCAGGTACTGAAGGGCGGCAG
TCATGATCCGAGGGTAGAGGGCCACTTCAGTGGCAGCGGTATGGC
Right flanking sequence: Indices 72431 -- 72930
GGCAGGCGGCGACGCTTCAACTCTTCTGAGAAGACGGGTTGGTCCCAGCAGACATAAGAATGCTG
CTACGATCTCATTCAAGAAGTACCTCGTAAAGCGCGTCAATCTAGATCTAGATTGTTGTTGATGT
GCTTAAAGAAATCAGTGGCGGAGAGCTTTATGACGGGAAACTGTCACGTAAGGTTCGGAGGGCGG
GGAAATCTCCGACCCCTACTTTTGATTATGGTATGGTATTGTCAGATTTAAATGTAGGTATACTT
TATCTATTTGCTATATCTTCTCTAGGCGTGTATGGTATTATTACAGCAGGCTGGTCCAGTAATTC
TAAATATGCTTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTTTCTTATGAAGTTTCTATCG
GTCTTATTATCATTACCGTACTGATTTGTGTAGGTCCTCGTAACTTTAGTGAGATTGTGATCGCG
CAAAAGCAGATATGGTTTGCTGCGCCCTTGTTTCCTGTATTCATT
Done.