Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037463
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 640906
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:585 original size:18 final size:18
Alignment explanation
Indices: 564--599 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
554 GTCACGATCG
564 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
582 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
600 TCGATATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (18 bp):
ATATCGTCACTAGCATCA
Left flanking sequence: Indices 64 -- 563
TCGATAGGGCCTCATTCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACCCATGGTTATG
GACCCGAATCCATTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATATGAAAGAGT
GAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTAATTTAT
TCGGGGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCAATAACAAGAATATTT
CTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCACTAATAGACCGAGGGATAAGTAATT
CGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTGCTTTTG
CTAATTCGAATTGAAGGGTGATATAAAATCGGCCTATTTCCGACATCATATCGATAGTTAGCGCA
TTCATCATAGTTAGAAGCTCCAGCTCCGTATCAAGGTCACGATCG
Right flanking sequence: Indices 600 -- 1099
TCGATATCATCAATAAGAAAACCTTTAGATAGATATGTATCAAAGATCAGGTATTTTGGGAAATG
CTGTTGTCCCGCTCTCCTGACTATCGAAGACTCGAGCTGACGAAACCATTCGACCAGGTAAGAGG
GGGGGCTAAAAAAGAGAAAAAAAGAGATTAGTAAGTAGTTGAGCCTTTTTCCTTCTTTTTCGCGG
TGAATTGACCCCCGGGCATGGTTTAGGGCGGGTTTTGCTTTAAAATGGCGGGCCGTCATTTTCGT
TCTTTTTCTTTATTTGGCGCTCTTTTAGGCTGGTGGTGGAGTGAATTGAGGGACCGACGGATCGT
TGTGATAGCCGTGGTGAGTCGAATAGTAATATTCCTTCATAATGTCATAGATAGATTCAACTTGA
AAGACCGGTTTTCTTTTGTTGTTTAGTGAATCGATCCAGGTTGTTGTACTGAAAGTGGGAAGCAA
ATGAATCGAGTAGCGAACCTGTAGCAGTAGAAAGGATGTACTAGA
Found at i:6939 original size:22 final size:23
Alignment explanation
Indices: 6914--6962 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
6904 ATCTCAGCTA
*
6914 CCTACCTG-CACTACCTGCCAG-C
1 CCTACCTGCCA-TACCTGACAGTC
6936 CCTACCTGCCATACCTGACAGTC
1 CCTACCTGCCATACCTGACAGTC
6959 CCTA
1 CCTA
6963 TCTGTCCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.20, C:0.47, G:0.12, T:0.20
Consensus pattern (23 bp):
CCTACCTGCCATACCTGACAGTC
Left flanking sequence: Indices 6414 -- 6913
TCTTTCCTGTCTTTGTCAATAGAATGTATTGAATTATCAATACAGTTTTTCTAGCTGAAGTGTTC
ACGTAGGTCAAATAGCTTCTATAGCTCAATCCAATAGTAAGAGTAAGTAATCAACGGAGATAGAG
TCAAGCGGTTCAACCAAGGCTTCTAAGGAGAGCGGGGCAAAGTCCTCGCTTTAGGTTTAGGAATA
AATCCCGGTGAGTAGAAGTGGCTGCCCATTTATTACCTCTTTTCTTCTGATTCTGCCTGACTGCA
CGGGAAGACCAGACTTCGATTTTCACTTGAAACTGAAGCTGCCTTTGATGGTGACCCGGCTCTGC
TTCGCTACACAAAAAGGTAAAGGGTTCAGATGAGAGTAATTGAGTGTATGCCGTCCCTGTTAGTG
TCAGTCTAGTATAGGCAACCCTCTTCCTCGTAAGAAGAGGGATCCATAGCGTCCTTCACTGTCTA
ACTAGTCTTATTGGATTGAACCTGTAGCTCTATCCATCTCAGCTA
Right flanking sequence: Indices 6963 -- 7462
TCTGTCCTTCTTTAGCTCATGAGATAGATCCCGAACCTGTGAGTATGAAGTGAAACAAGCTAGCC
TTTTCTCTTTCGACTGGGAACTGCTTTACTTTATAGTTGATCCCGGAAAGGGTCAAGGGATAGGC
TTGATGCCTGATCAGCATAAGAAGAAGTAAGTAGTTCTCTCTTTCCTTCTTCCAACTCCTTAGCT
GTTGGAATTGGATATAGAACCGATAGGAGTAGGAGCATTCATTAACAGAGATGGATATTGGCTTC
GGTTGACCTTCAACCTATGGGAATGCTTGAAAAAGCTCAGATTCCAATAAGCTCTTGACCACTCT
CAGAGGTAGCTGGGAAAAAAGGTATAAGCGCTCAAAGCTAAGATCAGCTGCTATTGGACTTCTTT
CCTTGGCGAGAAGGGATCGTCTCACACCTGGCCTGGCAATCTCCGAGAAGGGGGAAAGAAAGCAG
CCTTGTTAATTAAAGTAAAGAACCGGGTGTAAATAGGTCCCTACA
Found at i:29884 original size:18 final size:18
Alignment explanation
Indices: 29861--29896 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
29851 GAACCTGTCA
*
29861 ATCAGAATTTCGAGTTTC
1 ATCAGAATTTAGAGTTTC
29879 ATCAGAATTTAGAGTTTC
1 ATCAGAATTTAGAGTTTC
29897 GCTTGCAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (18 bp):
ATCAGAATTTAGAGTTTC
Left flanking sequence: Indices 29361 -- 29860
TTAGATTCCGCCGAAGAAAAAACTGCTGAATGGGAGACTATTGAAAATAGAAAGAATGACATAAT
CTAATTCGGGTGTTTTGTTTTGTCCTCGTCTTTTCTTGTGGATAGCTCATCTCTTTGTTTGGAGA
GATCCATCTTCCTATGGTTGCCAGGTAAGACTTCAAATGGAATTGGCTTAGCGCGTAGTGATCTA
TGTGCTTATGCCTTCAAAACCTTTCTTTGGATTTGATCCTTTCACTACGTTTGGAATGGATCGCC
CATGTGAGCCCGAGGCCTAGATTCAGTCTTGCTGGGCACGGTTTTGATTCATTAGCCTCATATGA
ATGACCGAAATCATCTGCATTTGCCCTCCTCGAAATCAAGAGTGGAGCTTGCAAGTGCACGACCC
ATCACCCCGTCATAATATCTATTGGAACTAGTCTTGAGTCGGTGCAACCGCGAGTGGAACTGGTC
AGACTCGCTCGTGGAACCCACAGGAATCCATAATAGAACCTGTCA
Right flanking sequence: Indices 29897 -- 30396
GCTTGCAAGATCCCATCCCACCATGTCCGAATTGATAGTAACCAGTAACCTAACCTCGGATCCAA
GTACAACATCCGCTGAAGTTGGGCCAAGTAAATCGAAATCGAAGTAGGCCAATGGATCAAATGAG
ACCGAACCCCTCTCTTCTTGAGGATTGCTTCCTTGCCGTGGCTTAGCCTGAGACGGGACGGACTT
TTCAGTATCATAGGAGACTCGGGCTGACCATAAGATTGCCCAACTCGATCTTGACTTGCTTCCTT
TATGGTATCTCAAGAAAGAGAAGAGCACTGAATCTCATCATTTATATTGATTCTTTTTTGCTAAA
GATTGGCTTAGTCTTCAGTCCTTCCACTGGCGGATCCCCTTGTAGATCCACTGATAGGTGGATTT
CTTTATGATTTATGATTTATTCAGTGTTCCCAGACGAGCTACTTCTTCAATGTCTATAATCTGTG
CCCACGGACGAGTTAAGGAATCAGCGCCCCCGTCCTCATCCTTCA
Found at i:31252 original size:19 final size:19
Alignment explanation
Indices: 31228--31284 Score: 96
Period size: 19 Copynumber: 3.0 Consensus size: 19
31218 GTCTATCAAT
31228 GAATTAGCGTAGAATAGAG
1 GAATTAGCGTAGAATAGAG
* *
31247 GAATTAGCCTAGAATAGAT
1 GAATTAGCGTAGAATAGAG
31266 GAATTAGCGTAGAATAGAG
1 GAATTAGCGTAGAATAGAG
31285 ACTTTTTGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.42, C:0.07, G:0.28, T:0.23
Consensus pattern (19 bp):
GAATTAGCGTAGAATAGAG
Left flanking sequence: Indices 30728 -- 31227
CAACGGTATCACATCACACTTCCTAGCACGGAGAAGGTGTCTCATAGGCCAATCAAAGACGTTTT
AAGGCATAGTTCAGGCAGAAGACGAATCAAATAAGGAAAGGGTTGTAATCCCTCTCTTGGTGATA
GTAGCTCTTCATCAGCTTATAGTAGGAGCTGAGCTCTCCCGCTAGCTCTGGTAGTAAGGCTCTTC
GGTCAATAGTTCCACTGGAAACTGCTTCCTGTCCGAAAGAAAGGTAGGGCGAATGATGCAGTAGG
AACAGATTACTGCTTTGCTGCTTGATACTGAAGAAACTTAGTGTACTCAAGATAGAGTTTTATGC
TCTGTAGTGGTAGAAAGGAGTGGGAACATACTCATAAGTAGCTACATTCGCATATCGTGGAGGTC
TACCCGGAAGAAAAACAAGATCTCAACTAGAATCACTAGGCTTAACGCACTCTTCACCGAATCAC
CATAGTGAGAACACTTCCAGCCCGAAAGAAAGGGAGTCTATCAAT
Right flanking sequence: Indices 31285 -- 31784
ACTTTTTGATAGATCTGTACTTTAGATGCTATATATAGATCAGTTCGGTATCAACCTCTAAAAGA
GAGATAGAGAGGCTTGGTCGAGACTCCCCCTGGCTAAGTACTTTCCATCTAGCAGTCTAGCTGCC
TGTTCCGCCCCTAAGTCTTGGACATTTTGGCGTAGGTTGGAGCCCCTTCATGAAATCGAAGAGCC
GGTCCTCTTCCGTCATATCAAAAATGTCCAGGGAGAACCACGAAAGAAGGCCTTCACATACTCGC
GTATGGGGCCTATTTGCTTCAGGCTCATCAACATGTCGGACCACAACCGGGCAGGAACCCTCCAT
TCTGCCTTAAACTCGTCCTCAAAATAGATCTAATTGCACTTCACGCTTCGCGTTCTTTACGTCTT
TTGGTCCGCCACCAGAACTTGGCTGAACCATCAAGATACATGACAGCCGTATTCACCGACGCCTC
CTCGGACGTAGTCCGACAAGCCGCCGAAAAGGATGGGCAAGGAAA
Found at i:43890 original size:13 final size:14
Alignment explanation
Indices: 43849--43896 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
43839 GAACGTAAGG
43849 AAGGAAAGGC-ATA
1 AAGGAAAGGCAATA
43862 AA-GAAAGGCACA-A
1 AAGGAAAGGCA-ATA
43875 AAGGAAA-GCAATA
1 AAGGAAAGGCAATA
43888 AAGGTAAAG
1 AAGG-AAAG
43897 CAGGAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 8 0.28
13 13 0.45
14 8 0.28
ACGTcount: A:0.58, C:0.08, G:0.27, T:0.06
Consensus pattern (14 bp):
AAGGAAAGGCAATA
Left flanking sequence: Indices 43349 -- 43848
GTCTACTGTAACAGAACTAGCGGCGGTTACGTTCACAGATGCCCAAAGAAAAGAAAGTCCCACAC
CTATGAGTGCGCAAAGAGCTTATTCGAGAGCAGCTGAGTCAATAGCACTGGATTCAAGGGATGCC
TATTACCCCCTCTTCCCTACTTTCCTAAAAGCAGCAAAGGCATTCATTCATACCTGTAACCATAG
CTTGCTTGCTACAAAGAGCCATGCTTAAAGGCATGAAGGAGCTTACCTTCGACTAAGGCCTGAGG
GCAGGAGTTTACTAAGGACTAAGGCATGAAAGAGGTTACTATTGAGCATCGCTTGCCTTACTAAT
GTGCTGTGCAAGAAGGCTACGCACCTTGCCCTTATGAGTGCAATCCTTGGATGCTTACTTCTTCT
ATTACTAATATCATTTCTCTTATCGATTGATTTCCCGATAGGGCATTCGTCCGATAACGGATATG
GAACTCTAGCACTACTACTCTAAGAAGGAAAGTAAGAACGTAAGG
Right flanking sequence: Indices 43897 -- 44396
CAGGAAAGGAAAAGGTAAGACTAGCAAGAAATCTGGGTGCTAGTAACACATACTAGTAGAGGTAA
ATCAGTTCCTACTGATGCCATACCATTGCCATACTTCACTAATTCAGTCTATTCTATTGGGCCTA
TGGGTGATATAGACTCTTCTTAGTCTTACCTCTAAGAAGAGAAATTGTTCCACTAATCTTCGTGC
TCGCTTACTGCCTACCATACTTACCATGCCTACTATGCTTACTAACCCACTAACCACTAACTCCT
ACCATGCATACGTAAGGATATTCTCTTTATCACAGACAGTCTTCCTTCCTTATCCCGCTATTCCT
GATTCTTGATAGCACAGGAAAGAGAGAAGACCGTACCCAGCCGAATCTCTTGACTTCACCGCTAC
GCACCTTTCAAACAGACTTGTCTTACTCCAAGAGCGAAAATAGCATCGGTTATCCTATCCGACAA
CCTAGGAGTAGTACTTGCTAAAGCTAAAGCTCTCGACACGTGAAA
Found at i:76643 original size:24 final size:24
Alignment explanation
Indices: 76611--76660 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
76601 CTCTTATGTG
76611 CAGAAGATGAACCCGAGATCTCCC
1 CAGAAGATGAACCCGAGATCTCCC
*
76635 CAGAAGATGAACCCGAGGTCTCCC
1 CAGAAGATGAACCCGAGATCTCCC
76659 CA
1 CA
76661 TCTTCGGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.34, G:0.22, T:0.12
Consensus pattern (24 bp):
CAGAAGATGAACCCGAGATCTCCC
Left flanking sequence: Indices 76111 -- 76610
TACCCCAACCCCAACCCAACTTGCTCTGTGCTCTGGTCCCCGGTCTTATCTTTGCCTTTTCCTTT
CCCTTTCGTCTACTAAGAAAAGGCGAACAGCATCGACGATGGCCTTTTCCACCTTTATTTTGAGC
GGCGAGTCTTTTTCCGACCATAATGCGTTATTAAGTATGGAAAGACATCGGCGCACATTGCTAAG
GTTGGATGGATTTTTCGGTTGGGGACCATATGTTATTACCGTAGAGACTTCTTCGTCCAAGTTCT
CTATCGGACCGACAAGCGGAGTACCCCCTTGGGCTTCCATCTCTTTCCTGATTTTCCAATCGACC
CATGCTCGGATGGACGCCCGTGTTTCATCCATTTCGAGTTGGTGTCTCTGAAGCAATTGAGCTTC
GACGTCGAGTTGGAGAGGGGTCTTGTTCAGATCTATAGCCCCCCGAATCTCCTTTTCCTCCGTTA
TGGCCGGAGTACTGTTGAGATCAAATCCCCTCTTCCTCTTATGTG
Right flanking sequence: Indices 76661 -- 77160
TCTTCGGTGTCGCAAAATGCAATGAGTGGTATACCGAATACATATAGAAAGAGAGAGAATATAAC
TACTGGAATTATAAAGTTTCCCATTATTTCTAAGAAGAAAACTTTCATCTTTCGTGTAGTTTGTT
CTAGAACAAACTACACGAAAGATGAAAGTTTTCTTCTTAGAAATAATGGGAAACTTTATAATTCC
AGTAGTTATATTCTCTCTCTTTCTATATGTATTCGGTATACCACTCATTGCATTTTGCGACACCG
AAGATGGGGAGACCTCGGGTTCATCTTCTGGGGAGATCTCGGGTTCATCTTCTGCACATAAGAGG
AAGAGGGGATTTGATCTCAACAGTACTCCGGCCATAACGGAGGAAAAGGAGATTCGGGGGGCTAT
AGATCTGAACAAGACCCCTCTCCAACTCGACGTCGAAGCTCAATTGCTTCAGAGACACCAACTCG
AAATGGATGAAACACGGGCGTCCATCCGAGCATGGGTCGATTGGA
Found at i:76961 original size:24 final size:24
Alignment explanation
Indices: 76925--76974 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
76915 ACACCGAAGA
76925 TGGGGAGACCTCGGGTTCATCTTC
1 TGGGGAGACCTCGGGTTCATCTTC
*
76949 TGGGGAGATCTCGGGTTCATCTTC
1 TGGGGAGACCTCGGGTTCATCTTC
76973 TG
1 TG
76975 CACATAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.22, G:0.34, T:0.32
Consensus pattern (24 bp):
TGGGGAGACCTCGGGTTCATCTTC
Left flanking sequence: Indices 76425 -- 76924
TCCAATCGACCCATGCTCGGATGGACGCCCGTGTTTCATCCATTTCGAGTTGGTGTCTCTGAAGC
AATTGAGCTTCGACGTCGAGTTGGAGAGGGGTCTTGTTCAGATCTATAGCCCCCCGAATCTCCTT
TTCCTCCGTTATGGCCGGAGTACTGTTGAGATCAAATCCCCTCTTCCTCTTATGTGCAGAAGATG
AACCCGAGATCTCCCCAGAAGATGAACCCGAGGTCTCCCCATCTTCGGTGTCGCAAAATGCAATG
AGTGGTATACCGAATACATATAGAAAGAGAGAGAATATAACTACTGGAATTATAAAGTTTCCCAT
TATTTCTAAGAAGAAAACTTTCATCTTTCGTGTAGTTTGTTCTAGAACAAACTACACGAAAGATG
AAAGTTTTCTTCTTAGAAATAATGGGAAACTTTATAATTCCAGTAGTTATATTCTCTCTCTTTCT
ATATGTATTCGGTATACCACTCATTGCATTTTGCGACACCGAAGA
Right flanking sequence: Indices 76975 -- 77474
CACATAAGAGGAAGAGGGGATTTGATCTCAACAGTACTCCGGCCATAACGGAGGAAAAGGAGATT
CGGGGGGCTATAGATCTGAACAAGACCCCTCTCCAACTCGACGTCGAAGCTCAATTGCTTCAGAG
ACACCAACTCGAAATGGATGAAACACGGGCGTCCATCCGAGCATGGGTCGATTGGAAAATCAGGA
AAGAGATGGAAGCCCAAGGGGGTACTCCGCTTGTCGGTCCGATAGAGAACTTGGACGAAGAAGTC
TCTACGGTAATAACATATGGTCCCCAACCGAAAAATCCATCCAACCTTAGCAATGTGCGCCGATG
TCTTTCCATACTTAATAACGCATTATGGTCGGAAAAAGACTCGCCGCTCAAAATAAAGGTGGAAA
AGGCCATCGTCGATGCTGTTCGCCTTTTCTTAGTAGACGAAAGGGAAAGGAAAAGGCAAAGATAA
GACCGGGGACCAGAGCACAGAGCAAGTTGGGTTGGGGTTGGGGTA
Found at i:126290 original size:32 final size:32
Alignment explanation
Indices: 126249--126313 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
126239 GGATTAATAT
126249 TCTGATCACTACGCTTTAGTGGCCAACGGGCG
1 TCTGATCACTACGCTTTAGTGGCCAACGGGCG
*
126281 TCTGATCACTTCGCTTTAGTGGCCAACGGGCG
1 TCTGATCACTACGCTTTAGTGGCCAACGGGCG
126313 T
1 T
126314 GAGATATGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (32 bp):
TCTGATCACTACGCTTTAGTGGCCAACGGGCG
Left flanking sequence: Indices 125749 -- 126248
TTTTTATTCCAAGCCACTGCACTAGATGCGCATGTAGTCGTAGTAGTCGGCCCAGAATGCCTCCC
TCTGTTCTATACTATAGAATAAGGTCAAGGCCTACGAGCTCTCTGTTTTTGTTTTATGGCAGAGA
TCTTTCCACACCAAGGAAAAGGAACCGAATCACAAAGATCTATTCACTTATTTGAAGCAGCATCG
GAAAAGAAGCGGATGGTTCATGTAGCAGTGGAAGAGGCAGTCGCCTTTTATGAAGTCTGGGCTTT
CGAGATCGAATCGTAGCCAAAGTATTTTTCCAGGTTTAGAAAGACTGGTTCGAAAGGACCAGGAA
AGATCAGCTGTTCGCTCTTCTTCAAGGGGTGAGAGAGCAAAAGAGAGTAATGACATCGTACCGTA
ACCCTACCCTAGAAAGGGAAATTTGATTAGCTTGCTTGAACAAATCCGCTCTTTTCGAACATCAG
GCCAACGGGCGTGAGATGAGATGATATTTGCTGTTGGATTAATAT
Right flanking sequence: Indices 126314 -- 126813
GAGATATGAAAAGAGTGACCCTGAGCATAGGCCGACGCATGCTCATTCTATTTTCCCATAGTGAC
ATTCTCCTTCCTGATTCCAGAGCAGAGAGAGGAAATCTGTCTCATTCGGGGAGATAGTCAAGCAT
TTTGATACCGGGCTCAGAGAAGAAAGATGCAAAGGCAGGGATTGAGTGAAGCTCTTCCCCTCTCT
CCAACTAGTCGCTTTTTCTACTCTAGTTCTTTATATACTCGCTTCAAGTATTCCGCTCGCTCTAG
CTATCGCTTTTTCAAAGAAAAAGGTCTTACGCTACGTAAACTACGCTCTTACGCTTAATCGCTCT
TACGTTACTTCGTAACTCTATAGTATTCTCATAAAAAAGCTAAGATAGATCTAATAGTTCGCGGA
GAGGAACTGGCCAGGAGAATAAGAAGATTTGAGAAAAAGAATGATTCTCCCAAGTCGAGTGACAG
GGCTTGACCTTTACGGATGGCTTAACTGATCTAATTAGAAGTACA
Found at i:164494 original size:28 final size:28
Alignment explanation
Indices: 164454--164509 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
164444 CTCTCTCTTC
*
164454 CAGGACCTGTTTGCCCCTTTCCCTTAAG
1 CAGGACCCGTTTGCCCCTTTCCCTTAAG
164482 CAGGACCCGTTTGCCCCTTTCCCTTAAG
1 CAGGACCCGTTTGCCCCTTTCCCTTAAG
164510 GCGATTGTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.14, C:0.38, G:0.18, T:0.30
Consensus pattern (28 bp):
CAGGACCCGTTTGCCCCTTTCCCTTAAG
Left flanking sequence: Indices 163954 -- 164453
GATACCGGTCCAGCCTGCAAGAAAGCGACCGGCGGGGCTTCCCTCCGCTTCTAGCGATCTTGCGC
CATATGTAACCCAAGAGTGAGACATGGCAAAGGGCGGGACCTCGGCCCGAAATACCTATTTGAGT
GAACCGCGCTTCCAGAGAAAGGTGTAATGTAAAAATCCTAACAGTTAGCCAGTCGATCCCACGTG
AAATTCTCGATGAGTCACGGAATGGCTTTGCTAGTTTCGTGTTGTGGAGTGTTCGATCCGTCAAG
CGGGAGAGTGCTATTTTTTTTTTCTTAGTTCATAGTGATGGTTCCGTTTCGGTAGTGATAGTTTT
CCTTGAAAGGGCTAAGTCAACCGTGCTAAAGATGCGGTTGGATTGAATCATCAATAAGTACTCGT
CTTGAACTTCCTACTCGTTTTTGTGCCAGTCTTACTTTAAGATAGATAGAGGTATAGTTGCGGGG
CGGAGTTAATCAAGGCCTCTTATTCGGGTTCTAACCTCTCTCTTC
Right flanking sequence: Indices 164510 -- 165009
GCGATTGTCTATTGTCTTAAGATAAGAATAGTTCACGCCGCTTCCTTCAGTCGCGTGCTTTGAGA
TTGGTTCTAAAAGAGATCGACCTTAAATGAAAAAGGAGAGTGTGCCCCAACATTTTGTAGTCCTG
AGGGACTCGTTGAGGCCGGTTTACTTGGTTTAGTAGTTCCTTTCTCTCCTAAATACCCGATCAAG
GAACCGGAGAGAGAAAATCACATAATAATGGCAAGTACTCCGGTTAGTGAGTAGCCGCCCCTACC
TGTAAGCCCGAACTAGTAATCAAACAGGATGTATTTGTTCGAAAGTGAGTAAGGTTCTTTGCATC
ACCTGCTCTTGACAGTTAAGGGAGAATGATCCCAATAAACAAACAAGCGTCAGCCCCGAAGCGTG
AGGGATGGAGTAGCTCGCCCTATACAATAATTCAAGGAGAGAACGAAGTAGCTCGATTTGACTCT
ATCCGCTTTGGATGAGTTCGTCCTAGGCGTAGGCTCCATCTCCAA
Found at i:185278 original size:5 final size:5
Alignment explanation
Indices: 185268--185292 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
185258 CTGACATAAT
185268 GTAAA GTAAA GTAAA GTAAA GTAAA
1 GTAAA GTAAA GTAAA GTAAA GTAAA
185293 CCTAGTGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
GTAAA
Left flanking sequence: Indices 184768 -- 185267
TATTCCTTGGCAGGAGATAGCGGCCGTGGCCGTGTTCTCGCTCCTAGGATTGCTTTAGGCCAGCC
CTTATTATAATTATACCATTCCTTTGGAATGGAGGACCGGGCTTTAAGAATTCCTTATGAAACTA
CCAGTAGGATACAGGCACATCGAGCTATGAAACCCCGTATTTTTCACTTAAAATAAGCTCTTTAA
GCAATCCACAAAGAAGAAAGCCAGCCAAGAAGAGAGCTAATAGCAAAAGCGAATAACAGAGGAAT
CACTCTAGTTAGGCCTTTAGCCAGGAATAGCGCCCTTGGTCTCTCGATCCAGAGCTCATAGTAGG
CGAGGGAGGACGGACGGGAAAGCTAACTCACTTATGCAGCTGGAAGGGATCCTGCTTTGGGACAA
TCCACAAATGGAGACTGAGGATAAGCAATCACTATTCTCTTAGGAGAAAAAACCTATTCAAACCC
TGAGATTGAAGGACTTGACTGAGTTCAAATTGAATCTGACATAAT
Right flanking sequence: Indices 185293 -- 185792
CCTAGTGGAATTGACTGCTTCTGAAAGGACGAAGTCCCGCTCGGTTGATAAGAATGATACAATTG
ATTCTATAATCTTTGCAATAAACAAAGAAATCACTACGCCCTACCCTTCCTGCTTGGCTCTGGAG
GAACCACAAAGAATCCTCGTAATAGTCATAGACGGAGTGGAAGAGAGTCAGTCATTTTCCTTAGA
AAGTTAGAATGGTAGTTTACTTGCTTATAAAGTATGGAAAATTTTTTTTTGATCACTCCTTTCCT
TTCAGTGCCCGTTGACATGCTACTCAGTCACCAGCCTCTGGCATAGTAGTTCTCTCTGGTCAGAA
AGCTAATGCCGAAGCGGCTCTAATCTCTCCTCTAACCAGTGCATATGCATAAGAGTGCATAAGAC
AGGGATCCAGCCGTCTACAACCGTCTACACAAGGAGTCTGGCCTCTGGCCGGCGAAGTCACTCAC
AACGGAGAAAGGGGCCCCGTCCCAATTCAAGGAATAAGCTGATAG
Found at i:229455 original size:24 final size:24
Alignment explanation
Indices: 229427--229476 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
229417 CGGTCAACTA
229427 TAAGAAGTCGTTTATCCTATTAAC
1 TAAGAAGTCGTTTATCCTATTAAC
229451 TAAGAAGTCGTTTATCCTATTAAC
1 TAAGAAGTCGTTTATCCTATTAAC
229475 TA
1 TA
229477 CATTACTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (24 bp):
TAAGAAGTCGTTTATCCTATTAAC
Left flanking sequence: Indices 228927 -- 229426
CATCGACGTTGTTTTTTGACCGGAAGGCCGAGAGCTAACTATCGAGACTTTGGACTATCCGGACA
CATACTTCGTGAAATGGTTCATGCGTGTTTGTTGCCGGGGGCAACAAGATCAAGTTGGTAAGGAT
TAAAATATCCTTCATTTTTCTTTTTTCGATTGGATTTCTATGATCTATCATCATAGAGGCGGCCC
CTTTACCATTCTGTACAAATAGGCTATTCTATTTGTACGGGTATGGAAAAGGGGCGCATTCAATC
CTTGTTTGTTTCTTAGTTCTTCCCAGTCCTTCTCTTCATCGCGGGGTAGAGCAGTTTGGTAGCTC
GCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCCGTCTCCGCAACATTTTTTATTTTTTGA
CAAAAAAATGAGGTTTGATTCTGTTAACTATTAATTAGCACTTTTCTTCTTTTTTTTTTTTTTTT
CTTTGGGGTGGAAAGATAGAACCGCTATACTATCACGGTCAACTA
Right flanking sequence: Indices 229477 -- 229976
CATTACTTTACCTTGGCGGATAGCGGGAATCGAACCCGCGTCTTCTCCTTGGCAAAGAGAAATTT
TACCATTCGACTATATCCGCATTTTTTCCTTGAAATGGCTGGAAAATCTTTATCCAGAGTTAGGC
CAGATACTCTCTTCAGGGTAATTCCATCAAATTCCACTACCAAACCAATTTAAATGAAAGCCAAG
TACATATTGCAATTTTCAATATTAATTAATATTAATTAATATTCATTATTGAATAGTTTTCAATA
TTTTATTTCTATTAATTATTATATTACTATTTATTTCTAATATATAGATATTTTTCTATTAATAA
TATATATTTCTATTAATTATTAGATAATTATATTATCTTTATCAGAATTCTATTAAATAGATTCT
AATTATCTAATTTCGATTATTATTATTTTTTAATCTTATTTTTTTTATAATAATATAATTTTTCG
TTCTATCTAATAATCGAATTTTAAATAATATAATTTTATTGTTTA
Found at i:229704 original size:10 final size:10
Alignment explanation
Indices: 229689--229719 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
229679 TGCAATTTTC
229689 AATATTAATT
1 AATATTAATT
229699 AATATTAATT
1 AATATTAATT
*
229709 AATATTCATT
1 AATATTAATT
229719 A
1 A
229720 TTGAATAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (10 bp):
AATATTAATT
Left flanking sequence: Indices 229189 -- 229688
TGTTTGTTTCTTAGTTCTTCCCAGTCCTTCTCTTCATCGCGGGGTAGAGCAGTTTGGTAGCTCGC
AAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCCGTCTCCGCAACATTTTTTATTTTTTGACA
AAAAAATGAGGTTTGATTCTGTTAACTATTAATTAGCACTTTTCTTCTTTTTTTTTTTTTTTTCT
TTGGGGTGGAAAGATAGAACCGCTATACTATCACGGTCAACTATAAGAAGTCGTTTATCCTATTA
ACTAAGAAGTCGTTTATCCTATTAACTACATTACTTTACCTTGGCGGATAGCGGGAATCGAACCC
GCGTCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACTATATCCGCATTTTTTCCTTGAAATG
GCTGGAAAATCTTTATCCAGAGTTAGGCCAGATACTCTCTTCAGGGTAATTCCATCAAATTCCAC
TACCAAACCAATTTAAATGAAAGCCAAGTACATATTGCAATTTTC
Right flanking sequence: Indices 229720 -- 230219
TTGAATAGTTTTCAATATTTTATTTCTATTAATTATTATATTACTATTTATTTCTAATATATAGA
TATTTTTCTATTAATAATATATATTTCTATTAATTATTAGATAATTATATTATCTTTATCAGAAT
TCTATTAAATAGATTCTAATTATCTAATTTCGATTATTATTATTTTTTAATCTTATTTTTTTTAT
AATAATATAATTTTTCGTTCTATCTAATAATCGAATTTTAAATAATATAATTTTATTGTTTATTT
TTCATTCGAGTTCCAGAAGTTTGACCCCTCCCACGAATTTTTGTGTTTTTTTTTTATTTGCATTT
TGGAGACTTATAGTGAATTTTAATGTGTCTCACAACCCGAAAAATTCGTGGGAGGGGCATTTCAT
TGTTGGATTGGGAACGAATAGATTTAAGAAATGAGAGAGTTAAGGATACCCACCAGAAAGACTAA
TCCAATCCACAATGATGTACCAGAAAATACGACATTTTTGTTACT
Found at i:234493 original size:14 final size:14
Alignment explanation
Indices: 234474--234501 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
234464 AACAAGCGTT
234474 CAACTTTCTTTTAG
1 CAACTTTCTTTTAG
234488 CAACTTTCTTTTAG
1 CAACTTTCTTTTAG
234502 AAGGAGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (14 bp):
CAACTTTCTTTTAG
Left flanking sequence: Indices 233974 -- 234473
GAACAAAACAAAAAGATCGTATGCCTTGATATGAAAATATTTGATACATGAAGCCGCGATCTGAT
TTATATATAAATCAGATATCGATATAAATTAGATAGAGATCAAACTTGATCTTCTTGTGTTCGGT
TCGGGAATCAAAGAAAAAGAAACATATTGGAAACAGCTCTTGTCTTGGAACTTGGAATCACCCTT
TCTTAGTATCTTAGTATGGAACGCCTAGGAAAAAGCGGATTGAATCGGAAATATCGACGGATTCT
TGCGGAGTCCAAAGAAATATCAAATAAAAAAAATCTACTGTTCGAATTTCATAGCTATCGAATTT
GCAATTTGAATATCAGAATAGTGGATATAGTCATGATTCAATGGGTTAGGTCCACTTACTTTTTA
TTTTGTTGATTTCGAATCTTTACAATAGATTAGATTGGAATAATGGAAAAGAAAAATATTTGGTG
ATCGAAGAGACGACTTCACATTACTCATTATAATAAACAAGCGTT
Right flanking sequence: Indices 234502 -- 235001
AAGGAGAATTACTATTCTAATTACTATATTCTAACTCATTAATTACTATATTCTAACTCATTATA
AGGATAACGTATTATCATTAAATTCGAAAGTTTATAATTACATTATTATCCAGTTGGTTACTTTT
TTTATTACAAATCAACACAATTTTTATTCCCGTTTCAATATGAATATTACCACTTTACTTTATTT
ATATTTATGAAAAAGGCCAAAAAGCCCCTTATCGGATTTGAACCGATGACTTACGCCTTACCATG
GCGTTACTCTACCACTGAGTTAAAAGGGCAATTGGATTCAATTATTGAAGGAGTCACTAGGCGGA
TAAGATAGATCTATATCTATCTATATATATATTATAATTATAAGTATATGCAGTAGACTCATAGC
GGCGAGTGTCACCTAGGGGAACGATAATTTTGATTTACTTAATTTACTTAATAAGTAATAAGTAT
AAGTATCGGTTAACCCGGGTTTATTGATATTGGATTTGATAAATA
Found at i:234547 original size:22 final size:22
Alignment explanation
Indices: 234519--234564 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
234509 ATTACTATTC
234519 TAATTACTATATTCTAACTCAT
1 TAATTACTATATTCTAACTCAT
234541 TAATTACTATATTCTAACTCAT
1 TAATTACTATATTCTAACTCAT
234563 TA
1 TA
234565 TAAGGATAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (22 bp):
TAATTACTATATTCTAACTCAT
Left flanking sequence: Indices 234019 -- 234518
ACATGAAGCCGCGATCTGATTTATATATAAATCAGATATCGATATAAATTAGATAGAGATCAAAC
TTGATCTTCTTGTGTTCGGTTCGGGAATCAAAGAAAAAGAAACATATTGGAAACAGCTCTTGTCT
TGGAACTTGGAATCACCCTTTCTTAGTATCTTAGTATGGAACGCCTAGGAAAAAGCGGATTGAAT
CGGAAATATCGACGGATTCTTGCGGAGTCCAAAGAAATATCAAATAAAAAAAATCTACTGTTCGA
ATTTCATAGCTATCGAATTTGCAATTTGAATATCAGAATAGTGGATATAGTCATGATTCAATGGG
TTAGGTCCACTTACTTTTTATTTTGTTGATTTCGAATCTTTACAATAGATTAGATTGGAATAATG
GAAAAGAAAAATATTTGGTGATCGAAGAGACGACTTCACATTACTCATTATAATAAACAAGCGTT
CAACTTTCTTTTAGCAACTTTCTTTTAGAAGGAGAATTACTATTC
Right flanking sequence: Indices 234565 -- 235064
TAAGGATAACGTATTATCATTAAATTCGAAAGTTTATAATTACATTATTATCCAGTTGGTTACTT
TTTTTATTACAAATCAACACAATTTTTATTCCCGTTTCAATATGAATATTACCACTTTACTTTAT
TTATATTTATGAAAAAGGCCAAAAAGCCCCTTATCGGATTTGAACCGATGACTTACGCCTTACCA
TGGCGTTACTCTACCACTGAGTTAAAAGGGCAATTGGATTCAATTATTGAAGGAGTCACTAGGCG
GATAAGATAGATCTATATCTATCTATATATATATTATAATTATAAGTATATGCAGTAGACTCATA
GCGGCGAGTGTCACCTAGGGGAACGATAATTTTGATTTACTTAATTTACTTAATAAGTAATAAGT
ATAAGTATCGGTTAACCCGGGTTTATTGATATTGGATTTGATAAATATCAATGAAATGAAGTGTT
TCAAGACCGACCCTAATTTCAAGACCGACCCTAATGGAATTGACT
Found at i:235039 original size:18 final size:18
Alignment explanation
Indices: 235018--235054 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
235008 AAATGAAGTG
235018 TTTCAAGACCGACCCTAA
1 TTTCAAGACCGACCCTAA
235036 TTTCAAGACCGACCCTAA
1 TTTCAAGACCGACCCTAA
235054 T
1 T
235055 GGAATTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.24
Consensus pattern (18 bp):
TTTCAAGACCGACCCTAA
Left flanking sequence: Indices 234518 -- 235017
CTAATTACTATATTCTAACTCATTAATTACTATATTCTAACTCATTATAAGGATAACGTATTATC
ATTAAATTCGAAAGTTTATAATTACATTATTATCCAGTTGGTTACTTTTTTTATTACAAATCAAC
ACAATTTTTATTCCCGTTTCAATATGAATATTACCACTTTACTTTATTTATATTTATGAAAAAGG
CCAAAAAGCCCCTTATCGGATTTGAACCGATGACTTACGCCTTACCATGGCGTTACTCTACCACT
GAGTTAAAAGGGCAATTGGATTCAATTATTGAAGGAGTCACTAGGCGGATAAGATAGATCTATAT
CTATCTATATATATATTATAATTATAAGTATATGCAGTAGACTCATAGCGGCGAGTGTCACCTAG
GGGAACGATAATTTTGATTTACTTAATTTACTTAATAAGTAATAAGTATAAGTATCGGTTAACCC
GGGTTTATTGATATTGGATTTGATAAATATCAATGAAATGAAGTG
Right flanking sequence: Indices 235055 -- 235554
GGAATTGACTTAAATTGATCTGACCCCATCAGAACGGAACGAAACTTATTTGATTGATACATGGA
TACATGGACCTACCAATTCGACATAGATCCACCGGATTTCACATGTGATAAAGAGATTCTGTTTG
TTCCCCGAACCCAAATTTTAGAAGAAAAAAAAAAAAAAAAAAATTGATAACTTGTTAATCTTAAT
CCCCGTTCCCAGATTTTCGGATTTCTCATTTGTGAATTTCCCAGCTTAGGGCGATATAGGAATAG
TCCGATCTCATCTTACCAAGGAGTGGATAAATGAATGAAAGTTAAGTGGAAGAAATGAAGAAAAA
ATCTTCTTTTATGTCGGACCAATCACTTCCCAAAAGAGTCCTCTACTTTCGTCTTTCGGCCTATT
TTTATTTTTATTATTATTTATAGCAATTTCTATAATAGATTTCGATTTTAGACTAGAATGGCGAT
TAGAATGAGCGATTGATGGACGAATCAAAAAAAGCTATTGGTATG
Found at i:237325 original size:17 final size:17
Alignment explanation
Indices: 237305--237341 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
237295 CTGGTAAATA
237305 AAAAAAGTATTAGTATT
1 AAAAAAGTATTAGTATT
237322 AAAAAAGTATTAGTATT
1 AAAAAAGTATTAGTATT
237339 AAA
1 AAA
237342 GTAAAGGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (17 bp):
AAAAAAGTATTAGTATT
Left flanking sequence: Indices 236805 -- 237304
CTTAAATTACTAGTTTGAATTTGAAAGAATTTATCTCATTCAAATTTCACGCCGAACTTTTGAGG
GATACGTTCTAGTACTAATCCAAGGGAGGGGGGATGATATTCTTAATAAAATAAAGATCAAGCAA
GGCGCCAACCCCTCCCGAAGAGGGAATGAATAATCTTTTTTAAGCGTATTGCCAAAGAAGAAGAA
ACTCTAAATAAATCTAAATAAAATAGTCAATTTTATGAAATATTCGATTCTTTTATACTGGGACT
CGTCTTTATCACACTTCTTTTTCGTTTTTTTTTTTAATGATATAATTTTCTTGAAAAAAAGAAAA
TGAAAAGGGGTTTAGAACTTAACCCCTTCCCTTTTTCTTTTTCTATTTCGTTTCGATTGTTTGTT
TGGTTTTTTTCTAAACCCTTTGTAAACAAGGAAAGTGTAAAGCGGTTAGGGGGTTGTACAAGTAA
GGCGGTCGATTATAGAAAAGACAGACTGGAAAAGACTGGTAAATA
Right flanking sequence: Indices 237342 -- 237841
GTAAAGGAATTCTTTTGATTGAATCAGGAATCAAAGTTTGTATTTGGTGTGTGGATAAAAGAGCT
GCCTATGTTATACTATTGAATTCTCGACGATGAATCGACTTGACAGTCAAATATTGTTATTCATG
ATATTGATCCCATTCGCTATCATCGAAATGTAATTCATCCCATTGAATTTACAAGCGAAAGGGTT
ATCATCTCTATGGGATTAAATCCCGAGTTATTGCGAAGTAAAAAAAAACCAAACGATGAGACTAT
GGAAGTAAATATTCTCGCATTTATTGCTACTACACTGTTCGTTCTAGTTCCTACTGCGTTTTTGC
TTATAATATACGTAAAAACGGTCAGTCAAAGTGATTAATTTGAACGAAACTTGACTTCTTAGTTC
TTATCAAGGATTTAAGAAACAAATTTCAATTTCATGTCTTAGTCTTAAATGAAACCAACGGACTA
GAATCAGCAGTAGCCTATGAGATTCGATAGTATGGTAGAAAGATT
Found at i:255776 original size:15 final size:15
Alignment explanation
Indices: 255756--255787 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
255746 AATGTTTTCA
255756 AAATGAATAATTAAT
1 AAATGAATAATTAAT
255771 AAATGAATAATTAAT
1 AAATGAATAATTAAT
255786 AA
1 AA
255788 TAATTATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (15 bp):
AAATGAATAATTAAT
Left flanking sequence: Indices 255256 -- 255755
AGAAAAAAAAAAAGAACTAGCGTTCTTTTTTTTTTTAGTCTATCTAAAAGAGGAGATCATATGAA
AAATGTAACCGATTCTTTCGTTTCTTTGGTTAACTGGCCATTCGCCGGGAGTTTCGGGCTTAATA
CCGATATTTTAGCAACAAATCCAATAAATCTAAGTGTAGTGCTTGGTGTATTGATCTTTTTTGGA
AAGGGAGTGTGTGCGAGTTGTTTATTTCAAGAATAGGCTGGACCCAACCAGCTGCACTTTTTTTC
GTTATAACTAGGACCAAAGGGAAAAGGGTGCATGATTCCGCGAATTACTTCTGAATAAATTTCAA
ATCATATTTAAGAACCATAGCATTTCGTGATTTGTTGGTAAATCTATTTTGATTCTCTATCAACC
AAACCAATAATGTGGGACCATTAACATGGTTAAAGCTAAAGTTTGAAGTCCAGACACAGCACGGT
ACTCTTTCTACTACTATGTTTTACTATAGAATAGAAATGTTTTCA
Right flanking sequence: Indices 255788 -- 256287
TAATTATTGGACTTTTTTTTTTTCGATATAAAACACTCATGTTGATAAAAAGATTTGAGCCTTTT
ATTGGTATTGGAAATTTGATTGGAAAATATTGGAAAAATAGGTATTTCAACCAACCCTTATTTAT
GCTGAATCGATGACCTCCATATAAAGTAAGAAGAATTCTTTGGATTTGAAGAAAAAAAGAAACAA
CTTTGCTGACAATTATATATTTTGATTTGGTCAGAAGAGTCCTCCGAATATTCTGTTCTTGGATT
AGGGATCAGTCGCAAGATTCATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAGGCTCATT
ACATTAAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGTTGACGTAATTGAGTGGGAGAGC
CAAATGAATCGAAAAATTCATGTTTGGTTCGGGAAGGGATCATCGAAGTTTTGAGATGAATGGAA
AGATAATCTACTTTCATTAAGTGATTTATTAGATAATCGCAAACT
Found at i:260243 original size:16 final size:16
Alignment explanation
Indices: 260222--260252 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
260212 AAAAAAGAAA
260222 TTCTATAAGCTATATT
1 TTCTATAAGCTATATT
*
260238 TTCTATGAGCTATAT
1 TTCTATAAGCTATAT
260253 AATCAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (16 bp):
TTCTATAAGCTATATT
Left flanking sequence: Indices 259722 -- 260221
TTAAATAACTAAATTTAATAATTCAAAACAATTTCTTTTGTTGGACGAATTTTGACAGATATGGC
TCGACAAAATAACTTTTATCCACACACCAAATACAAATTTGGATTCTTGATTCAATCAAAAGAAT
GGAAATAGTCCTTCTTTTTATTGTTCCTTTGAATACAATAACAAGGATTTCATTTTGTGGTTTTC
AAATCAAATTCAAATAAATCGTTTTTTATGGTATGGTTCGCACCCTTTCTACGGTTCAGCGGTAT
GGGTCATTAGAACAAAAAAAGGCCCGGCTGGGTACTGACCAGGCCAGGCCGTGGAAGTGGAAATA
AAAAAGGCCCCGTTGAACGAAATTAAAGAGATATTCTTTTCTTTATTTTTTTCTATTTTATCTCT
TTCGAATACTTTCTTTATTTTAATTTTCGAAAAATGATAGAAATGGAATTGCTGATAAAAGTTAT
ATCTATTTATATAATAGAATACAAAAGACAATAAAAAAAAAGAAA
Right flanking sequence: Indices 260253 -- 260752
AATCAATTTACTTTCTATATTCTCTTCTAGAGAATATAGAAGAGAATATAGAAAGTAAAGATAGA
AAATCAAGTAAAGACGGGCTTTTTCAAGCATTATTTTTTGTGTAATGTAACATAGTCATTTTTTT
TTTTTTATTTTCAATTAGGAGAGATGGCTGAGTGGATTAAAGCGTCGGATTGCTAATCCGGTGTA
CGAGTTCTTCGTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCGGGCGATGGCTTGGTATTTTT
CAAATTTAACTTTAGCGAACACTTTTACTTTATTTTTAATAGTAACTGGGAATCAAAAAATCCTA
AGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTTCGCGTCCGGGATTACGC
CCTGGATCATTAGACAGGAATCCGAAGATGAAGAGCGAAACAAAGAATATCACTACGGTGTAAAC
AAAGAGTTTGAGAGTAAGCATTACACAATCTCCAAATCAGGTTTT
Found at i:260296 original size:12 final size:12
Alignment explanation
Indices: 260281--260305 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
260271 ATTCTCTTCT
260281 AGAGAATATAGA
1 AGAGAATATAGA
260293 AGAGAATATAGA
1 AGAGAATATAGA
260305 A
1 A
260306 AGTAAAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AGAGAATATAGA
Left flanking sequence: Indices 259781 -- 260280
TATGGCTCGACAAAATAACTTTTATCCACACACCAAATACAAATTTGGATTCTTGATTCAATCAA
AAGAATGGAAATAGTCCTTCTTTTTATTGTTCCTTTGAATACAATAACAAGGATTTCATTTTGTG
GTTTTCAAATCAAATTCAAATAAATCGTTTTTTATGGTATGGTTCGCACCCTTTCTACGGTTCAG
CGGTATGGGTCATTAGAACAAAAAAAGGCCCGGCTGGGTACTGACCAGGCCAGGCCGTGGAAGTG
GAAATAAAAAAGGCCCCGTTGAACGAAATTAAAGAGATATTCTTTTCTTTATTTTTTTCTATTTT
ATCTCTTTCGAATACTTTCTTTATTTTAATTTTCGAAAAATGATAGAAATGGAATTGCTGATAAA
AGTTATATCTATTTATATAATAGAATACAAAAGACAATAAAAAAAAAGAAATTCTATAAGCTATA
TTTTCTATGAGCTATATAATCAATTTACTTTCTATATTCTCTTCT
Right flanking sequence: Indices 260306 -- 260805
AGTAAAGATAGAAAATCAAGTAAAGACGGGCTTTTTCAAGCATTATTTTTTGTGTAATGTAACAT
AGTCATTTTTTTTTTTTTATTTTCAATTAGGAGAGATGGCTGAGTGGATTAAAGCGTCGGATTGC
TAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCGGGCGATGG
CTTGGTATTTTTCAAATTTAACTTTAGCGAACACTTTTACTTTATTTTTAATAGTAACTGGGAAT
CAAAAAATCCTAAGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTTCGCGT
CCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAGAGCGAAACAAAGAATATCAC
TACGGTGTAAACAAAGAGTTTGAGAGTAAGCATTACACAATCTCCAAATCAGGTTTTTGGGGAAA
AGGAAAAAGAGAATAGATTCTCTATTTTTATACTACATATCCAAT
Found at i:262656 original size:21 final size:21
Alignment explanation
Indices: 262615--262656 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
262605 AATTTTATAC
*
262615 TATTTACTTTATTTTCTATTT
1 TATTTACTTTATTTTCAATTT
* *
262636 TATTTATTTTATTTTGAATTT
1 TATTTACTTTATTTTCAATTT
262657 GGGGAAAGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (21 bp):
TATTTACTTTATTTTCAATTT
Left flanking sequence: Indices 262115 -- 262614
GAAAGCCTCCCCATTCCTATCTTTTTAGAATCCCAATTATTCTCTTTTCATTTCGGAATTCTAAA
CAAGAGGGTATTCCTGGTACTGATTGAATTCGGGATTAAGTCTCTTAAGTAAGACTAGGTTAGAT
TAAAATAAAAAACAACAAATTAGAAAGGAAACAATGACTTAATCTGGGCCCTTTTGTCTTTGTAT
CTATACAAAATAGTCTAGCATTCCGTAAAATGGGATCTTTTTTTTTTTATTTATTTAGGATTCCC
ACAGAAAGAATTCGGGGTGGGAGTAGGTAAGAGTTAGTGAGCAATGAAAGATACCGATTTGAATA
TCGGTGTCGGTCCAAATTTCATTAACCAATAATCCCGCTCTATATGGAATGGAGGCTCTTTGATT
CTAACCCAAATTTTGCGGTCTTGGTCTTTTTTTAATGAATAATTGTAAATCTCTGGAATAACAAT
TGAGACGGGGGTTATTCATATAGTCTATTTACTTGAATTTTATAC
Right flanking sequence: Indices 262657 -- 263156
GGGGAAAGATTATTGAATCTGAAGCCCAAGCCAAAGAAACGACACATAATTTGAGGAAAGGCTTA
TATGCATGGATTGCTATCCTTCTATTTCAGAGATAACGTCCTTTTGCTTTTTAAGATTTGTGAGC
CCTTATCTTCCTGTTAAATTAAATATTTAACATACAATATACATAATTACTTCCAACGAAAATTG
TTCAGTCTAATCTGATAGATACGGAAATCGCCCATTTTTGTAATTCTGATTTTCTTTTTCATTTC
AGGATTCCGGATGAACGACTAACAACCTAAATATTCCCTTCATATACAAGGAAAAAAGTCTGTGT
ATCGACCGAAGCAATGACTATTCATGATTCCATACTGGAATCAATTACATACCGGTTCCAAACTA
GAGAAATGTTATGGTAAAACTTCGTTTGAAACGATGTGGTAGAAAGCAACGTGCGACTTGAAGGA
CATGATCCGCTGTGGATTTGTTTTTTACATCCACCATTTTCGATT
Found at i:270444 original size:23 final size:23
Alignment explanation
Indices: 270415--270460 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
270405 GATCTTATAT
270415 ATATCATATAATGAAGTACCACA
1 ATATCATATAATGAAGTACCACA
270438 ATATCATATAATGAAGTACCACA
1 ATATCATATAATGAAGTACCACA
270461 TGAGTGGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.26
Consensus pattern (23 bp):
ATATCATATAATGAAGTACCACA
Left flanking sequence: Indices 269915 -- 270414
CTACTTCGTCTTCCAAGTGCAGGATAACCCCAAGGGGTTGCGGGTCTTTTTCTACCAATCGGAGC
CCTTCCTTCACCACCCCCATGGGGGTGGTCTACAGGGTTCATAACTACTCCTCTTACTACAGGAC
GCTTCCCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGTTCGCCCCAACATTCCCC
ACTTGTCCGACTGTTGCTGAGCAGTTTTTGGATATCAAACGGACCTCCCCAGAAGGTAATTTTAA
TGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACCCGCTGCTCTAGCTAATTGTC
CACCCTTTCCAAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTA
GATTCATCTTTTTGATCAATCAAAACCCCTTCCCAAACCGTACAAGCTTCTTCCAAAGCATACGG
CTTTCTGGATGTAGATGATGATATCTATACAGATGGATCTTATAT
Right flanking sequence: Indices 270461 -- 270960
TGAGTGGATATATAGGAATCCAAATCTGCCGAATCACTCATGTTATGATCTTCTACATCCTAGGT
CTTCCCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAAAT
TACGTCGATACTTCCACATATTATGGGTAACGTAGGAGACATCTCTATTTTTCCCCGGGAAATCT
TTCGAATTACTATTACCACTGCTTAGCTTTCAATTCGCCTCTGACCATCAAATCAAATGTGAATA
ACCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTCTGGTTCTGTCGGTGCTTGAAACAATTTAGT
CTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTACTGAACTCAATCAC
TTGCTGCCGTTACTCTTCAGTTTTCTGTTGAGGTCTATCCTGTAGAGGTACTCAAATTGGATCAG
TGATCGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCCA
Found at i:274621 original size:24 final size:24
Alignment explanation
Indices: 274593--274667 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 24
274583 ACAAAAAAGA
274593 TTTGTCTAAGCCACTTCCTTTCTT
1 TTTGTCTAAGCCACTTCCTTTCTT
* * *
274617 TTTGTCCAAG---TTTCTTTTCTT
1 TTTGTCTAAGCCACTTCCTTTCTT
*
274638 TTTGTCTAA-CTCACTTCCTTTTTT
1 TTTGTCTAAGC-CACTTCCTTTCTT
274662 CTTTGT
1 -TTTGT
274668 GAGTTTCGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
21 17 0.44
24 17 0.44
25 5 0.13
ACGTcount: A:0.11, C:0.24, G:0.08, T:0.57
Consensus pattern (24 bp):
TTTGTCTAAGCCACTTCCTTTCTT
Left flanking sequence: Indices 274093 -- 274592
GATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAA
TCAATCTAGATTGATCCGAAATCGGATTCAAATCCAATATAGCACCTATGGGTACATAAGAAATG
TATTGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCACAGGGAT
CAAATAGGAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATC
GAATTTGAAAAAGAGTCAGAAGAAATGGTTCGCTCCTCTGATTTTGATTTCTCGAACCGAGAGAT
TCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAG
CATTTGAAACATTTCGTTTCTGAGCAGAAGAGCCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAAGTTATCGACAAAAAAGA
Right flanking sequence: Indices 274668 -- 275167
GAGTTTCGGGAATATCCCCATTCATAGGTCTGAGATCCACATCTATGAATTGAAAGGTCCGAATG
ATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAA
CCCTTCTTATTGGATGATCATAATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGGAAGAAT
ATCACCATTTTTGTTCAATAAGATACCGAAGTGGATGATTGACTCATTCCATACTAGAAAAAATC
GCAGGAAATCTTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGG
CTGAATCCTGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAATCGACT
TCGATTCTTGAATAATCCACATCGCTTCCGCTTCTATTGTAACAAAAGATTCACTTTTTATGTGG
AAAAGGTCCGTATCAATAATTATGATTTTACGTATGGACAATTCC
Found at i:283606 original size:23 final size:23
Alignment explanation
Indices: 283579--283624 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
283569 TATCCACTCA
283579 TGTGGTACTTCATTATATGATAT
1 TGTGGTACTTCATTATATGATAT
283602 TGTGGTACTTCATTATATGATAT
1 TGTGGTACTTCATTATATGATAT
283625 ATATAAGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (23 bp):
TGTGGTACTTCATTATATGATAT
Left flanking sequence: Indices 283079 -- 283578
TGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCT
CTACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTC
CTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACC
GACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTGATTTGATG
GTCAGAGGCGAATTGAAAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATA
GAGATGTCTCCTACGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGT
CTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGGGAAGACCTAGGATGTAGAAGATCA
TAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCA
Right flanking sequence: Indices 283625 -- 284124
ATATAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGC
TTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATGAATCTACTTCAACCGATATGCCCT
TAGGCACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCG
GGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGA
GGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGCGAACC
AGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTA
GTTATGAACCCTGTAGACCACCCCCATGGGGGTGGTGAAGGAAGGGCTCCGATTGGTAGAAAAAG
ACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGACGAAGTAG
Found at i:300383 original size:21 final size:20
Alignment explanation
Indices: 300354--300392 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
300344 ACGCCTACGA
300354 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
*
300374 AAAGAGTCGCTTGGTTTTA
1 AAAGA-TCGCTTGGATTTA
300393 TCCATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.31, C:0.10, G:0.26, T:0.33
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Left flanking sequence: Indices 299854 -- 300353
TTTAAACGGAGTTCTCTGGAGAATGAACTCCAGTAAGAGGAAGGTAGAGTAGAAATAATATGATA
AAGTCGTCAAAATGAGCGAACACGCTCAAATAAAAAAAAAGATTGATTTTATTCTTCTTTCCCAA
TTTCTTTTTTTTTTTTCTTACGGCACGGCTGCTTCACAGATTTTTTGAACAAAACATCCATCTGT
GTTTGAGTTCAGATTGGAATTTTTATTTAATTGAAGAGTAAGCCTATTTTTTTCTGGTTCTAAGA
CCGGGAGGTCTAGCGGTCAACCCACTTCTTTCAAATTGTTTCTCATTATTAAGAAAAGGTAACGA
AGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAATCGTTGTTCTTTTAAGGTCAATCTAT
TCACCCGTCTAGATAATATTTTTCCTTGTTCACTAAGAAATCGACTAATTAAAGTCATGTTTCTA
TAATCAATTCGATCCCCCGATTGGATCGGGGGCAAACGCCTACGA
Right flanking sequence: Indices 300393 -- 300892
TCCATAATTTGTTTATTCCTTATCCCTAAAATCCCATTTCGATGAAATCAAAAAATGATTTATAG
AATCAATTATAGGATTTGGTTTGTCTAGATTTATTTATTTGTTTTTATTAAAATATATGAAATAA
TCTAGATATATATCTAGATTAGTTTTTCATGTCCCTTGGAAGGGTGACACAAAAGCACGCGGCTT
GACTCTATCTATTTTTTTATCTCCCCATGAAGTGTATGCTTGTAACAATAGGGACAGAATTTTCT
CAATTCCAATCGACTGGGTGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATACCCCTTG
ATTCCTTATTAACACCGTTTCGAACACAACTAGTACATTCCAAAATAACCCTTACTCGGACCTCT
TTACCCTTGGCCATGAACCTCCTTGGGGTTTTTGATTCACCCAACTTTTCTATTTTCCGACCCGC
AACGAATAAGAAGCACGGGACAAAAAAATAGAAGTTGCTAACCAC
Found at i:309780 original size:25 final size:24
Alignment explanation
Indices: 309751--309799 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
309741 TTCTAATTCG
309751 TATATAAATGTATATTAAGTATACT
1 TATATAAATGTATA-TAAGTATACT
*
309776 TATATAATTGTATATAAGTATACT
1 TATATAAATGTATATAAGTATACT
309800 AAGTATACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (24 bp):
TATATAAATGTATATAAGTATACT
Left flanking sequence: Indices 309251 -- 309750
ATCGAATTGGTGAGGTAGAATAAAATAAGAGTATCCCCTTCATATAAGTCCCTGTAGATTGGTAC
CATTGACTTTCATTGCAGACATGAGTTCGGATCACAGCCTCTTGTTCAAAATAGATAGAATTTAT
GTACCTATATATCATGTTTACACATGCATAAGAGCTCTTCGTTTATGTTCGGGGAAAGCCGCCTC
TTAGTCTTATACACTATTCTACTAAATGGATATCCGTCATCGCTAAGTCTTGAAAAAAACTAGAC
GAGATTTGACCTTGATCCGATCGGATTTACAAAATCTTATTTTTTTCAAGATAAAGAAATAACGA
AGCCATTGCCATTGCCGGAAATACTAGGCCCACTAAAGGCACAAAAATAGAGGGAAAGCTGTTGA
GAATTGTCATAGAAAGGGTACCTCGATTTAATATTTGTACCTGTTATTGGTATAAGGATATCCTA
TAATAATTAGAATTCATATTCTAATTATTATCATATTCTAATTCG
Right flanking sequence: Indices 309800 -- 310299
AAGTATACTAAATGAGTATATATACTAAGCGCAAGGAATGTAGAACTAAATAAACGGGCCTATGC
ATCTTTCTACATGAAATATATGTATGATAATCCATTATTATTACTTATTTTTATTCTTCTCTTGT
TTTTAGCTTCGGATTTCTTTTTTAATATCTAATTTTGTTAATACAAAATTAGATATTAAAAAAGA
AAAGAATTTCTTACAAATTCCCTAGGGATTCGTTAGAATGCGATCCAACAGCAGAGATTCCTAGG
AAAATAGTCCTTGTTAGGAGATATAGAAAGACGCAAGAGTTTCGATTTTCTCTATTTGAATTAGA
TACATACGCAAGAGGGGAACATGAAATTCATTTTATTTGCCCGGCCCCTAATTAATTCTAAGGAA
GAATGCTTTTTGATCTTGTTTTATTGAGAGAGGTTTACTGATTACTAATCCGTCATATCGGTAAA
ATAATTATCCGCACGATTCTTTCTACAATGAAATTTTATGTCACC
Found at i:309806 original size:25 final size:25
Alignment explanation
Indices: 309752--309806 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
309742 TCTAATTCGT
*
309752 ATATAAATGTATATTAAGTATACTT
1 ATATAAATGTATATTAAGTATACTA
*
309777 ATATAATTGTATA-TAAGTATACTA
1 ATATAAATGTATATTAAGTATACTA
309801 AGTATA
1 A-TATA
309807 CTAAATGAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (25 bp):
ATATAAATGTATATTAAGTATACTA
Left flanking sequence: Indices 309252 -- 309751
TCGAATTGGTGAGGTAGAATAAAATAAGAGTATCCCCTTCATATAAGTCCCTGTAGATTGGTACC
ATTGACTTTCATTGCAGACATGAGTTCGGATCACAGCCTCTTGTTCAAAATAGATAGAATTTATG
TACCTATATATCATGTTTACACATGCATAAGAGCTCTTCGTTTATGTTCGGGGAAAGCCGCCTCT
TAGTCTTATACACTATTCTACTAAATGGATATCCGTCATCGCTAAGTCTTGAAAAAAACTAGACG
AGATTTGACCTTGATCCGATCGGATTTACAAAATCTTATTTTTTTCAAGATAAAGAAATAACGAA
GCCATTGCCATTGCCGGAAATACTAGGCCCACTAAAGGCACAAAAATAGAGGGAAAGCTGTTGAG
AATTGTCATAGAAAGGGTACCTCGATTTAATATTTGTACCTGTTATTGGTATAAGGATATCCTAT
AATAATTAGAATTCATATTCTAATTATTATCATATTCTAATTCGT
Right flanking sequence: Indices 309807 -- 310306
CTAAATGAGTATATATACTAAGCGCAAGGAATGTAGAACTAAATAAACGGGCCTATGCATCTTTC
TACATGAAATATATGTATGATAATCCATTATTATTACTTATTTTTATTCTTCTCTTGTTTTTAGC
TTCGGATTTCTTTTTTAATATCTAATTTTGTTAATACAAAATTAGATATTAAAAAAGAAAAGAAT
TTCTTACAAATTCCCTAGGGATTCGTTAGAATGCGATCCAACAGCAGAGATTCCTAGGAAAATAG
TCCTTGTTAGGAGATATAGAAAGACGCAAGAGTTTCGATTTTCTCTATTTGAATTAGATACATAC
GCAAGAGGGGAACATGAAATTCATTTTATTTGCCCGGCCCCTAATTAATTCTAAGGAAGAATGCT
TTTTGATCTTGTTTTATTGAGAGAGGTTTACTGATTACTAATCCGTCATATCGGTAAAATAATTA
TCCGCACGATTCTTTCTACAATGAAATTTTATGTCACCAAAGAAA
Found at i:311246 original size:18 final size:18
Alignment explanation
Indices: 311223--311264 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
311213 TTGAGTTACA
311223 TCGCTTTCATTAGAACTT
1 TCGCTTTCATTAGAACTT
311241 TCGCTTTCATTAGAACTT
1 TCGCTTTCATTAGAACTT
311259 TCGCTT
1 TCGCTT
311265 ATAGTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.24, G:0.12, T:0.45
Consensus pattern (18 bp):
TCGCTTTCATTAGAACTT
Left flanking sequence: Indices 310723 -- 311222
ATATTTTAGCCATTTGCATCAAACTCAAACTTCCTTCTTGCATGCGTGCTCCCCCAGAAGCACAC
ACTAGAAGAAGAGGTAAAAATTTATTGGCAGCATACTCGATCAAACGGGTTATTTTCTCGCCTAC
TACGGATCCCATACTACCCCCCATAAACTGAAAATCCATAACCCCAATTGCGATGGGAATCCCGT
TTAGTTGCCCTGTACCTGTTTGAACAGCCTCTGTTAATCCTGTCTTGCTTTGATAAGAATCAATA
CGATTTTTATAAGGTTCCTCTTCTGAATCAAATTCAATGGGATCTATAGAGACCATGTCGTCATC
CATCGGATCCCAAGTACCTGGATCAACCAAAAGGTCGATTCTATCTGAGCTAATCATTTTCAAAT
GATATCCGCATTGTTCACAAAGATACATTTTTGATTTAAGAAATTTCTTATAATTTAATCCATAA
CAATTTTCGCATTGAACCCATAAATGCCTGTATTTTTGAGTTACA
Right flanking sequence: Indices 311265 -- 311764
ATAGTTAAATCACTACCATTCGTGCTACTTTGTATATTGGAACTCTCACTTTCACTACAAATGAA
ATTATAAATGTAACTGGCACTATAATTGTCACTACTACTTAAAACGTGACTATCAATACAGATTT
GAGAATGAAGATAAGAGTCAAGGCAATTATGAATGTGATTATTCCAACTCGATTTAGTATCATAC
ATGTAACGATCGGAATCAGGATCAGCGCTTTTAGATCCATTATTCCTCGAACTATAATTACGAAA
GCTATAAAAAGAACTTTCTAGTTCACTCAGAAAAGAATGAGCATTGTCTAGTTCCAAAATTTGAT
TTTCAATATCAAAATAGATGGAATAACTATCTCTATTACTATCCTTAACAAAAAAAGTGTCATCC
GAGATGAAATTATGAATGTCCCTGACACCAGCTAATTTGCTGTAACTTGAACTGTCACTATCGCT
CGAACTATGAATGTTTTTATTCTTATCATTTCTAATCAGTTCCTC
Found at i:314257 original size:21 final size:22
Alignment explanation
Indices: 314233--314275 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
314223 GTAAAGAAAG
314233 GCAGGGTATATATAT-CAAAAA
1 GCAGGGTATATATATCCAAAAA
314254 GCAGGGTATATATATCCAAAAA
1 GCAGGGTATATATATCCAAAAA
314276 AAGAATAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.23
Consensus pattern (22 bp):
GCAGGGTATATATATCCAAAAA
Left flanking sequence: Indices 313733 -- 314232
AGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCTTTGGTTACATAGTCAGGAGTATAATAAG
TCAATTTATAATCTTTAACACCGGCCTTGAATCCAACACTCGCTTTAGTCTCTGTTTGTGGTGAC
ATAAGTCCCTCCCTACAACTCATGAATTAAGAATTCTCGCAAGAACAAGGTCTACTCGACATAAA
TTAGGAGTTAATGAAACCCCTTCACAGGAATCTTTCACAAGCTTTTCAATTAATATTATCACCTA
CTCAGAGCGTTTCCTTGTTTTTTTAGACCATGGTATTTGATTCACCAAATACATCATTATTGTAT
ACTCTTTCATATGTATGGCGCAACCCAATCGGCGCCTTTCAAGTTTCTAATCCCTTACCTTTTTT
CAATCGAAATTTCTAAATCATAAGAAATTGACTCTTGACAGTAATATGTGTTGTATACGTAAATC
CTATATGTGCAAAGAAAATATGCGTAATTCATCCAGTAAAGAAAG
Right flanking sequence: Indices 314276 -- 314775
AAGAATAGACTAGGCATAAGTCGATATGCTAAAATAAGAAATAAGGTCCAATGAGATAGAAATAA
TGAATCGAAAAAGAGAGTTCAGGTTCGAACTCCATAGATAATATGGCGGGTATTGTCTATAATGA
TAGATATAATGAACGACTTTCTCAAGATTTTTATTCACCCACTTGATATTTTGAAAGTCGGTTGG
TTGAACTTGAAAATTCCCTCATTGAAATTGCATAAATGCATAAGCATAAGGAAACTATTGAATTG
CATTCGGTTGGACGGTACCAACGAAATCGAGCGCGAACTCCCATTTCTTATTGAATTAACCGATC
CACGTGCTATCGAAGATTTTTTTGGATGCGATCAAGTTCGAAAAAAAAAAAAATTGACATCTTTC
ACTTTATTATTATGAGAATAAATCCTACTACTTCCGGTCCTGGGGTTTCCGCGTTTGCAAACAAA
AACCTAGGACATATCGCTCAAATCATTGGTCCGGTACTGGATGTA
Found at i:320611 original size:15 final size:15
Alignment explanation
Indices: 320591--320621 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
320581 GGGAAGGAAG
*
320591 AAATAAAATAAAAAA
1 AAATAAAAGAAAAAA
320606 AAATAAAAGAAAAAA
1 AAATAAAAGAAAAAA
320621 A
1 A
320622 GGCCTATTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (15 bp):
AAATAAAAGAAAAAA
Left flanking sequence: Indices 320091 -- 320590
CCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTATGGTGTAGATCAACCAGA
AGAGGTATGCATAAAAGTATTTGCTCCAAGGAGTAATCCTAAAATTCCATCGGTTTTCTGGGTTT
GGAAAAGTGCGAATTTTCAAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCAT
CCACGACTGAAACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACGTAAGGATTATAT
TGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAATTCTAAGAAATTAATCTTCATTTTGAC
CCAATATTCAAGAAATATTTGTACGTTCTTTCTCTAGATCAAACGGAGGAATTGAAGTCTCATTC
GTATTATTATTGTGAATGGGATAAAGAAATTAAAGAGTTCTGTATCATGAACTTTGTATCGCGCA
CACCACTTCGACGGGCTCTAGCGGGTCACAGAGAGGGGAAGGAAG
Right flanking sequence: Indices 320622 -- 321121
GGCCTATTCCCAGACATCGAGCTAGATGGATAAGTATGTATGTATCATGATCTATAAATGAATAT
GTATGGCGAGCCATATCACTGAATTTGTAGTGATAGATACTCATAGATATTAATCATATGCCAGG
AACCAGATTTGAACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAGCTGAGCTATCCCGA
CCATTTCCGACACACCGTTCTCATCTTACTAGATGACTTGGGTCTATGTCAATTAAAAAATAAAC
AGGGATTAAAAGTCTTGGGAGGGGAATTTCATTTCTTGAATCATCAAAAAGAAGACTTTGTAAGT
TTCAGTATGAGCAATAATATGGATTGGGAATCATTAAAACGGGGATTCCTTGCTCAAAGGTGTTC
ATTTCTACATATATCGTATAGACCATACGGCTTGTGATAAGAGAAAAAAATTCTGCCCATATCCT
TTTGGAAATGGAAAAGAGTAGGATAGATGAGAAACCTACCGACTT
Found at i:326752 original size:16 final size:16
Alignment explanation
Indices: 326731--326764 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
326721 AAACTCTCTG
326731 TTTATTTATTTAGAAT
1 TTTATTTATTTAGAAT
*
326747 TTTATTTCTTTAGAAT
1 TTTATTTATTTAGAAT
326763 TT
1 TT
326765 CGATATCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTATTTATTTAGAAT
Left flanking sequence: Indices 326231 -- 326730
GAAACCGAGATAGATACCTTTCAGAAAATTCTAACTATAGTGGAAATGCTTCTATGTTATTCTTC
TGACGGTGGGAGAAAAGATAAAATGAAAGCAAAGCTGATTATTAATTTAATCAAAAGTCAAGTTT
GAAACTCATGCTCATGGAATTAACCTCTTTTGGTTAACCCCCCAAAAAAAGAATAAAGATAAAGA
TCGATCTATGAGAAATCTCATTCAATTCGATATACTAGATTCAAAAACCCGGGACACCAAAAGAA
TTGATTGCCGAGCCGTATGAGGCGGGAAACTCTCAAGTACGGTTCTAAGGAAAGGAATTGAACCA
CCTATTCCGACCGGGGGGAACAGGCCGTTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTC
AATCAAGCTGCCGAGTATTGGAAACAAGCTATTGCGCTTACTCCTGGTAATTATATTCAAGCGCA
GAATTGGTTGAAGATCACGGGACGTTTCGAATAAGAAACTCTCTG
Right flanking sequence: Indices 326765 -- 327264
CGATATCTATTTTCGTTTGGTATAATTAAAAATTAATTGTCTGTTAGCCCTATCAGTGGAATATA
AAAGGGATCATTTATCTGGTAAGAAACAATCAAGGAATTTCATTATATCCTTTCTAAGATCGTTC
TATTTCGTCTGGTATTTCATAAGGATAAACGATACAGGGATACGGTAGAAAATGTATTTTTCTCC
TATTCTATTCAAATTAATAAAAGAGACCCCTCGCAGGAATGTCTCTTATCCTAGTAATTACTAAT
GACTGCTTGGAATAAAGTAATATGTTCTATATACGCCATTAAAGTAGCAGCTGCATTTCGGGACT
TCTAATTGAGATATGAATACACTAAGGTTGTACAAAAAAAGGGTTTTTGACAAATTTTAAGCCCG
TAAAGGGTTTTATAAGATTAAAAAAGATTCAAAAGGTCCGTTGAGCGCCTCCTGGATATGTCATA
ATAGATCCGAACACTTGCCCTGGATCGACTTCCAGACATAATTGC
Found at i:369494 original size:15 final size:15
Alignment explanation
Indices: 369474--369503 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
369464 CAAACTCCTA
369474 TTGAAGGTATTGATT
1 TTGAAGGTATTGATT
369489 TTGAAGGTATTGATT
1 TTGAAGGTATTGATT
369504 CCACCGCGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (15 bp):
TTGAAGGTATTGATT
Left flanking sequence: Indices 368974 -- 369473
TCGAACGAAGCCTTGCACCCCTCCCTCGATGATAGTAGCTGGGTGGACTATTGGATACGGAACAT
AGAACTACCAGGCGAAGGAGAGAACCCTGGGATCGGCTCTCGTCTGCTATGATCTCCCCAGTAAA
AATATCGGATTTGTAACCGAACGAGAGTTGTTGTTGCGATTTCTAAATGAAATGGAATTTCAATG
TTTCCCGCTAAGCATTAGATTCGCTTCGCTGGGGCTATGAAATGTATGCATATGAAAACCTTCCT
ACTTAGAACAAGTAATTGTCGTCGATCAACCCTACCTTCGAATTTTGCGTATAGCACCCCCGGTC
TTGAACTGACAGGAATACAGGCTTTGGTATCCAAAGTGAAACGGATACTAGTTTTAATCATGAGT
GGGGTAACCCGTCCCCTCTCGAGCCGTCTTTACATCTGCCTATGTTGTATGGTTAGGGATGAACC
GCAACATGCGCTCGCTACTTCTTGCTCGAGCAACTCAAACTCCTA
Right flanking sequence: Indices 369504 -- 370003
CCACCGCGACTGCTGCTTCATCTTCTTCTCATTCCCCCGCTCCAGCCATGCTGGCTGCTGCTATC
TCAGCTCGGTCAACTGGCTCTGGACCAATAGATGGGACTGAATGTTTGAACCTCTGCATCTCGAA
ACTTGGAGACTAGTTCTCAATGATCGATCGATAACTAACTAACTTCTGCCCGAACCCACCTATTT
ACGCTTCATTCCGATCCCTACGCACTCGCACTGGTTTGGAGAGCTATTGAGACGAATCCGGTGTT
TGGCCCTATATAGGTTGGCGGGGGGGCTACAAAATCCGCTGAAACGAAAATCCAACTAGTCCCCA
GTAATCCGAATGGAGCTTCGTATGGTGCGCAAGGTGCAAAGTCTACTTTCGCACGCAGAATCTAC
TGAATCCACTGCTTAACCAACTGTGGCTATACGATGCGATGATAAAAACATCCGCTGTTGCTGGA
CCACCCCAGCCCGTGCTGCCTTAATTGTTTGCTGGTTCAACGGAT
Found at i:409821 original size:24 final size:24
Alignment explanation
Indices: 409758--409826 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
409748 ATTAAGATTA
*
409758 AGGAAAGAAAGCTTGGATATTTGG
1 AGGAAAGAAAGCTTGGATATTCGG
*** *
409782 AGGAAACGGCTG-TTGGCTATTCGG
1 AGGAAA-GAAAGCTTGGATATTCGG
409806 AGGAAAGAAAGCTTGGATATT
1 AGGAAAGAAAGCTTGGATATT
409827 TGAACCGGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
23 2 0.06
24 30 0.88
25 2 0.06
ACGTcount: A:0.33, C:0.09, G:0.33, T:0.25
Consensus pattern (24 bp):
AGGAAAGAAAGCTTGGATATTCGG
Left flanking sequence: Indices 409258 -- 409757
CCGTTGATTGATCCGCTTCTGAATAGAAGAGATTTGACCTACTTTCATTCACTTCCTTATAGGAG
GGAGGGAAGGTTAGACGTGAAGTTCTCTCTTCCTACATATGCTTAGGAGGAATGAATCTATTTCT
TGATTGGGAAAGAAGGTTCCGTGGCATTAGATAAGTATCCGGAAAGAAGGAGGATGTGGAAAAGA
AGAGACGGCGTTATCTTAGCTGTAAAGCAGCAGCTAGCCCCTGGTTGGTTTTAGATGGGATGGAC
ATAAGAGTAAAATAAAAGTACGGATGAGTTTGAACGCTTTAGGGTTCCACTCCACTGGTTTCAAA
GGGGAGTAGTTGATCCAGTAGTTCTAAATATAGATAGAAGAATACGCCATCCACTAATGTCGATT
CCTTCAAGCAAGAGAGTGCAACCCTTTGAAACAGGTCCCGTAAACGAGTGAAAAATGCCTTGTTT
CCCTTTTCAGTCCAAGCACTCTCAAGCGGGTAGCCATTAAGATTA
Right flanking sequence: Indices 409827 -- 410326
TGAACCGGTTCCGCCCTACCCTTAATTAAAGTACTGGTGCAAGGGAAAGAGCGCTCCTGCCCTTT
CCCCAAAGAGTACAAGAATGGCACCTATTCTATTGGTGTGCTACTGCCCTCAACCGCCCTGATCG
TCCCAATCCTCACTAAAAACAGACAGATCTCATATCTTTACTGAATACGCCTTTCGAGTGGTTTT
GGCTTCTCACTCAGGAGATATGAACTGAGAGCTAAGCTAGCTCCGACTGATGGACGTATACTATA
CTCGACTTCTTGTCTTGTCCGTTCGATATGATTAACCTACTTATAATTACCCATTTAACTACTCT
TATAGGAGATGTAATAACAGAGCTACAGGTATACTCTTGAACGAGAGGGGGCATATCTCGACTAT
TGCCCTTTTGGTTCTTTCGAGCAGGTCCTTCGGTTCTTTATGATTAGGGTTGTACTTTTTGGGCT
TTCTTTTCTGCTTTTCCGCGCTAGCAGTTCCAGCCTTTATTCTCC
Found at i:416927 original size:16 final size:16
Alignment explanation
Indices: 416906--416954 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
416896 AGGTAGTGTC
*
416906 TTCTTAGCCTTGGGTT
1 TTCTTACCCTTGGGTT
416922 TTCTTACCCTTGGG-T
1 TTCTTACCCTTGGGTT
*
416937 TTCTTACCCTTAGGTT
1 TTCTTACCCTTGGGTT
416953 TT
1 TT
416955 TTCTTCTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 14 0.47
16 16 0.53
ACGTcount: A:0.08, C:0.22, G:0.18, T:0.51
Consensus pattern (16 bp):
TTCTTACCCTTGGGTT
Left flanking sequence: Indices 416406 -- 416905
CTTATTCGGGATCAAAAGAGGGCTAAGGCCTGACGTTGTTAGAGGAGACCTTCTCTTACTGGCAT
TCACTTGGAGCTCTCTTTTTAGGGCAACCCTTTCACCGATCTTCAAACTGTATGAGAAGGTGTAC
TACTAACTCTGTCTACGGTGGGTGAGAGTCGATTTCATCACAAACAGATATTAGCGTATATAGAA
TCGAAATAGGAGCAGCTATTGCCCACTGATGTTAGCGCAAAGGTCCTTAGTCAAACATAAGGATC
TTATTCATTAAAGGACGGAAAACGGAGGTAAACCAAGAGTACCGAAACTCATCAACAAGTAGGCA
TGTCCACTACTTAATCTTTAAGTATTAGTAATGCTACTAGGCACTATACCTATCTTCCACTACTT
TCAATCGGGATAAATAACTATTTAAGTGAAAAGGCCTATCTATAAGGTTCAGTTCCCTCTGGGCT
TAACCAATTCGACTAGGGTAGCCTGTTTAGGTGTTAGGTAGTGTC
Right flanking sequence: Indices 416955 -- 417454
TTCTTCTTTATGGATTGCAACTGTTTGGTTATAGCCGGTACCTTAGAAATCTTAGCAACCCTTTG
CCTTTTTTGCAGGAGCTCCATTTTGGATGACATCTCTTGAATATCATTCTTCAGTTTCTCAATAA
GCTGATTTTTTCTCTTTTTCTTGATTGAGAATCTTATCACCTGAAACAAGTTCAATCTCAATTTG
AGAATTGAGTGAGGTATCCTCGTATGTTACGTCCTTAGGACGAGTGTCTACCCAATTATTATCAT
TATCATAGACAGGATCCCTTTTGCTACCGGTAGCAAGCATAACTTTGCTTTCCTTTTTGATTATG
TTTAGATCCTTCCACTCTATTTTGAAGTAATTATCCACGGTATTCTTCACCTCTTGTATTGAGAA
TCAAACCATTCAAAAGAGGCTAATCTTTTAGCGATTCCTTTGTGTTTAATTATATTATCATCTTT
TGTTGTTTCTAAGAACCCCAAGTTTGGAAGGAGGGGACTTAAAAC
Found at i:416941 original size:15 final size:15
Alignment explanation
Indices: 416906--416953 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
416896 AGGTAGTGTC
*
416906 TTCTTAGCCTTGGGTT
1 TTCTTACCCTTGGG-T
416922 TTCTTACCCTTGGGT
1 TTCTTACCCTTGGGT
*
416937 TTCTTACCCTTAGGT
1 TTCTTACCCTTGGGT
416952 TT
1 TT
416954 TTTCTTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 17 0.57
16 13 0.43
ACGTcount: A:0.08, C:0.23, G:0.19, T:0.50
Consensus pattern (15 bp):
TTCTTACCCTTGGGT
Left flanking sequence: Indices 416406 -- 416905
CTTATTCGGGATCAAAAGAGGGCTAAGGCCTGACGTTGTTAGAGGAGACCTTCTCTTACTGGCAT
TCACTTGGAGCTCTCTTTTTAGGGCAACCCTTTCACCGATCTTCAAACTGTATGAGAAGGTGTAC
TACTAACTCTGTCTACGGTGGGTGAGAGTCGATTTCATCACAAACAGATATTAGCGTATATAGAA
TCGAAATAGGAGCAGCTATTGCCCACTGATGTTAGCGCAAAGGTCCTTAGTCAAACATAAGGATC
TTATTCATTAAAGGACGGAAAACGGAGGTAAACCAAGAGTACCGAAACTCATCAACAAGTAGGCA
TGTCCACTACTTAATCTTTAAGTATTAGTAATGCTACTAGGCACTATACCTATCTTCCACTACTT
TCAATCGGGATAAATAACTATTTAAGTGAAAAGGCCTATCTATAAGGTTCAGTTCCCTCTGGGCT
TAACCAATTCGACTAGGGTAGCCTGTTTAGGTGTTAGGTAGTGTC
Right flanking sequence: Indices 416954 -- 417453
TTTCTTCTTTATGGATTGCAACTGTTTGGTTATAGCCGGTACCTTAGAAATCTTAGCAACCCTTT
GCCTTTTTTGCAGGAGCTCCATTTTGGATGACATCTCTTGAATATCATTCTTCAGTTTCTCAATA
AGCTGATTTTTTCTCTTTTTCTTGATTGAGAATCTTATCACCTGAAACAAGTTCAATCTCAATTT
GAGAATTGAGTGAGGTATCCTCGTATGTTACGTCCTTAGGACGAGTGTCTACCCAATTATTATCA
TTATCATAGACAGGATCCCTTTTGCTACCGGTAGCAAGCATAACTTTGCTTTCCTTTTTGATTAT
GTTTAGATCCTTCCACTCTATTTTGAAGTAATTATCCACGGTATTCTTCACCTCTTGTATTGAGA
ATCAAACCATTCAAAAGAGGCTAATCTTTTAGCGATTCCTTTGTGTTTAATTATATTATCATCTT
TTGTTGTTTCTAAGAACCCCAAGTTTGGAAGGAGGGGACTTAAAA
Found at i:427521 original size:18 final size:18
Alignment explanation
Indices: 427498--427535 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
427488 ATACTAATCT
427498 AATACTAATAGAATAGAA
1 AATACTAATAGAATAGAA
*
427516 AATACTAATATAATAGAA
1 AATACTAATAGAATAGAA
427534 AA
1 AA
427536 GAACTGTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.63, C:0.05, G:0.08, T:0.24
Consensus pattern (18 bp):
AATACTAATAGAATAGAA
Left flanking sequence: Indices 426998 -- 427497
AAAAAATAGAGAAATCAGAACCAAGTCAAGATGATACGGATCAACCCCTCCTTCTTGCGCCAAAG
ATCTTACCATTTCCGAAGGAACTGGAGTTACATCTCTTTTCCATTTCCATTCAAGAGTTCTTATG
TCTTTCCGCGCCCCTTTAAGCCCCCGAAAAATTGACAAAACGATTAACTACTTCATTTATGAATT
TCATAGTAATAGAAATACATGTCCTACCGAAACAGAATTTTGAACTTGCTATCCTCTTGCCTAGC
AGGCAAAGATTTGCCTCCGTGGAAAAGATGATTCATTCGGATCAAGATGAAAGTCCTACTACATT
GCATTGCCAGAATACACGGTGTATATTTGAAAGAGGTTGACCTCCGCTTCTCTCATGGTACAATC
CTCTTCCCGCCGAGCCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAACAG
GAAGAAAGGACTCGCTGAGCCGGGATCGCTAACTAATACTAATCT
Right flanking sequence: Indices 427536 -- 428035
GAACTGTCTTTTCTGTATACTTATGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTACAC
AATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCGTCGAAAGGATCTCGGAGACC
CACCAAAGCACGAAAGCCAGGATCTTTCAGAAAAAGGATTCCCATTCGAAGAGTGCATAACCGCA
TGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGGGAGGTATCGG
GAAGGAATTGGAATGGAATAATATCGATTCATATAGATACAGAAGAAAAAGTTCTCTATTGATTC
AAATGCTGTACCTATGGGATAAGGATAGAGAAAGAGGAAAAAACCGAAGATTTCACATAGTACTT
TTGATCGAAAAATCAATCCGATCTATTTCGTACCCTTCGCTCAACGAGAAAATGGATCAGATTCT
ATAGGATCAACCCTATAGGGAACTTAAAGGAAATAGAATAGGAAA
Found at i:441768 original size:15 final size:16
Alignment explanation
Indices: 441748--441790 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
441738 CGGATGGACA
441748 GATCGACTGT-CGCAT
1 GATCGACTGTGCGCAT
*
441763 GATCGAGTGTGAGCGCAT
1 GATCGACTGT--GCGCAT
441781 GATCGACTGT
1 GATCGACTGT
441791 TAAGGTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (16 bp):
GATCGACTGTGCGCAT
Left flanking sequence: Indices 441248 -- 441747
GTAACCTACAAGAAAGGCCATCCAGGATTAAGTGCCATCTGGGATTTAAGGTTTAGTACGACCCA
CTTTCTGAGTCTTGCAGACGAACGAACTCTTCAACAGGGTTTACTTTTCAGTTTCAGTCGAAATT
CAATCAAAATACAAGGTTGTTCATCCTTTATGTGCCTTCCCTATAAAGCTAGCTTGGGAGGGGCG
GAGCTGTTCCAGACTTCCTTTCATTATGGTATTTCCGAACAAGTTCCTGGATAACAAGCCTAAAG
GTTTTCTTATTGATGATATCGACGATGGTCTTGATATTCAAAGATTTGTTGTGAAATAGGCGCCT
GGTGGGTGATAGGTGGATATTAGAATGATGGGGAAAGAGCTGCCATACTTGACTAGAACCGAAGG
AAGATCTCTCACACCTATAAGTAAGTGGGTAATGGAAACTAGATGTCAACGAGCGGCACATAATT
GAAATTGGACAACCTCACCCCCCAGTGAATGTAGTCGGATGGACA
Right flanking sequence: Indices 441791 -- 442290
TAAGGTAGGACCTTCAACAAAGAGGGTTGATCAACAAGTTCAGACTATTTTCTGTCAATTCGGCT
GTCCCAAGATTGTATCATTTCGATTATCAAATCCCAATGTCTTGGTCTTGAATCATTCGATATAA
GGGCTTCACTTCAAAGAAAGAGGCATAGGAACAATGTCCCGAAACTGAAGATGAGACTGAAAGCA
GCCATACGAGATTAGAGAATAGAAAGAAGGGTTCCAAACAAGCAAGAAAGGGTTCAATGAACGCT
GCAGTTCACGATGCATAGCTTCCAACTAGCTCGGAAAGGCAAGAACCCTACTTTAGAGGTATAGG
TTGCAAAGAGGGGTTGCTATTGAATCGTCTGTGAACGAATCTGCTGCACATGAATGCACAGACTA
AACTGTTGGAGGAAGAGAAGTTGACAACTCCGCTCTTACAAATGCAATTGAATCAGCTCTGAGGG
ATTAACCGGATTGCACTGATTAGGCAGAAAGATGCCATTGACCTA
Found at i:491600 original size:18 final size:19
Alignment explanation
Indices: 491577--491614 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
491567 AAACACAAAC
*
491577 AAGCAAGCCAGGCAA-AGA
1 AAGCAAGCCAAGCAATAGA
491595 AAGCAAGCCAAGCAATAGA
1 AAGCAAGCCAAGCAATAGA
491614 A
1 A
491615 TAAGAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.53, C:0.21, G:0.24, T:0.03
Consensus pattern (19 bp):
AAGCAAGCCAAGCAATAGA
Left flanking sequence: Indices 491077 -- 491576
CTTTCTAGATTTATCGATGCCTTGTATAGTATAGTTCTAGTAAGCTGATCTACGACCATCCCCCA
CAGCCTTTGTTTCGGGTTCGATTTCTTATGCAGTTAGGAGTGGGGCGTGCTAGCGGGAAGTCCGG
TTATGAACATATATCAATCCCTCAATCAACCTGAGTATATATTTTATAGGACACGGGGCGATATG
ATATTATAGTGCATATATTCGCTCCTTGTTAAGACCCGACTAACTAAATTGAATCGAATCTCCTC
TTCTAGGCAACCGGGTCTGAGTCCCTGTCCCTAGTCTGAGTGTTAGTAGTTTCATTAGAGCAAGC
TCCTCAGTGTTAGGGTTTTGACTTGCTTGCTTACCGGCGGGAAAGGACAGAGTTTCATAGTCCCA
TTCCCCACCCAGTGATAAGATAGAGACAACCCTGCCAACCAGTAGTCCCCAGCCAGCCAGTTCAA
AAGCATAGGAATAGGTAGAGTAGATTAGATCTATTAAACACAAAC
Right flanking sequence: Indices 491615 -- 492114
TAAGAGAAGTGAAGGAGCGAAATGATAATAGATAGAGTGATTGGCAGATAGAGTTCTAGGCCAGT
TCAAGGGAAGCTTCACTCCACCCTCCTTTACGTAGCGAGCGGGGCAGGGATATTACATATCGCCA
GGAAAGCCAATTTATTGGCTTGAAAGAGCTTTGATCACGACTGGTTGTAAACAAACCACTGTCTC
GCCTCTGCTTTCTTTCGAGCTCCGCTCTCCCCGCCCCATTCATGGCTTGCTGTTCGGATAGTCAG
AAAGAAATTCCGGGAGGCAACGAGTAAGGAATTGATATGGCCCACTTTCTGTCGTTCTAGCTGAT
GCAGTCGGTTGATTCAGCTTCTTTTTATGCGTATATATATTATATTCTATAAGTGCTCGCTGGGT
TCCTTTTTGAAAAAAAACACACGGGGCTCAGACAGGTACCGAAACCTATTGTCATCCTTACATAC
AATAGAATGAAAAATGCATTTGTTTGAGATCTATATGAGAAAGCC
Found at i:495081 original size:8 final size:8
Alignment explanation
Indices: 495049--495091 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
495039 TTTATTATTC
*
495049 TAATTAAT
1 TAATTAAG
*
495057 TAATTTAAT
1 TAA-TTAAG
495066 TAATTAAG
1 TAATTAAG
495074 TAATTAAG
1 TAATTAAG
*
495082 TAGTTAAG
1 TAATTAAG
495090 TA
1 TA
495092 GTAGTGAGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (8 bp):
TAATTAAG
Left flanking sequence: Indices 494549 -- 495048
CGGGAATGAGTACCTATCCCTTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCC
TAACCACTGGACGAAAGGGACCAAAAAGCCATTCTTCATATACCTCAGCTCCGAGAATATAAGTG
GTTCGTTCTATACGCAATTCAAGATTTCGTTTGTGTTCATGTTGGCGATTTCTGATTTCTGATGT
GAATTCGGCGGGTCGTCCACCCCTTCCTACGGGTTCCCCCACCGATCCAGTAACACACCAACCCT
CCCTTTCTACGATCATAAAGCCCCCTGATTCCTTTCTTTGTCTTTCATCCCCCCTGAACAGAATA
AGTAAGGCTTTCTAATTAAAAAAAAAAAGAAAATAGGGGCGAAGCGCCCGTTTGAAGTGGCGAAG
GCCTATGCTAAAGTAAGAAAGAAAGTACGTTAAGGTTACGAAGTAAGGTCAGCTGGTTAAGGAAA
GCTCAGGTTATGAAATCGCTTAGCCGTTTTTTTATTTTATTATTC
Right flanking sequence: Indices 495092 -- 495591
GTAGTGAGGCGTCGGTACGGAGTTGCGTCAGCTGTACATATAGACTAGGCTAAGGCGGACTTCAT
CTCTTCTATTCTCTTCACTTACACTTCCGCTGAGTCTAACAAGGCTCAGGTGCGGAGCTTTCCAC
TGTGGACCGAGACTACGCAAAGGTAGAACACCATAGAAACTTCACTGACTTTATCATAAACCTTG
ATTTCGCTACGCTCAATAAGAACCCGGAATAGCGGAAATCGGTTCGTGTTCCGCTTCCAAAGTCA
GTCGTCTTTGCCCAAGTGTGAACTGCAGACGACTCTCCGGTGGTTCCATTCCTTCTTACTTGACT
TCTGGGTCAACCCAAGCCGAATGGGAAGAAAGGGGTCAGCCAAACAGCAGTCCACTTTGTACATT
TTCTGAGGCAGACCAATCAGGCATTTTAGAAAGGGGAAGGGCACTTCTCACCGAAGGAGGCAGTA
GGAATGAAGGAGGCGGGAAGCTACCGCTTCTAGAACTAGAATGCA
Found at i:503140 original size:18 final size:20
Alignment explanation
Indices: 503114--503154 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
503104 TCTTCTAAGA
503114 AAAACTTCTAATA-TAA-AT
1 AAAACTTCTAATACTAATAT
*
503132 AAAATTTCTAATACTAATAT
1 AAAACTTCTAATACTAATAT
503152 AAA
1 AAA
503155 TATAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 3 0.15
20 5 0.25
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAACTTCTAATACTAATAT
Left flanking sequence: Indices 502614 -- 503113
ACTTGACCTACTTGACTCAGCGGTTAGAGTATCGCTTTCATACGGCGAGAGTCATTGGTTCAAAT
CCAATAGTAGGTAAAACCGGCCGAAACCCCTGCTTTTGCCAGCATGACAGCAAGGAGTCAACTGA
ATGACCAAAGCATCGGTTGCTTCCACTTCTTCGACCCCCTCTCTTTTTCTCTTCATGTATGTGGG
CTGCCTGCCCCGTCCCGAATAGACGAACAGGAACAAGCTGAAGAGAAGGAAGGCGCGAGAGAGAG
AGTTGATACTCAACTCTCCTCCCTTCTTCCACAATTAGGTGAAGACCCGGGGGGCCGGAAACCCC
AACGGGAACCCTTTCACCGCGCCACACGATTCTTTCGCGAAGCGCTCTCTCAGGCGTTTCCACTC
CTGCCCCCGCAAGCAAAGCAAGATACCAGGCGACCAAGTGAAAGTGAACAGCCCCGAGCAAATCT
TCTAGAGAGCGTACCCTTTGTTTCTACTCTTTCTCTCTTCTAAGA
Right flanking sequence: Indices 503155 -- 503654
TATAAAAAAAAGAAGAAGATTTTTTTTTATGGACCCCTTGGACCTCCGACCAATGAGGTGATGAC
ACATGCATGCGTGCATATGAACTTCTAAAAAGTGGGTTCAAAACCTGGGTGGCACTATGTAACTC
AATCCATTATAGGGCTATTGGTGGATTCTTTTTTATTTTAGAATAGACTCTGAGATAGAGGAGAC
TTTAAGGAGATTTTGTCGAGATAAGGACTTGCAGCAAAAGTCGAGTAGTCGAAGAAGTAAGGTCT
CAGACTCGCGAAGACAAGTGAAAAGTATCTCGAGGTTTCGCCGCTTTGAAACAATAAGTTTCAAA
ATCTCGAAAAAATTTAGCGTGGTTTTTCTCTAAAAATTCGGAGGGTTCTGCCAGAAAGAGTTTGG
GGATTAAATCGTTTGGTCTTTGGAAGTTCCCTGATTGGTTTGAGAACATGATTGAAGAAGACCAG
AATTTTGGAATACACGTAGATCTGCAGATCCAGTGTTTGAAGTTA
Found at i:506725 original size:14 final size:14
Alignment explanation
Indices: 506706--506736 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
506696 TTTAATCCGG
506706 TATAAATATAATAA
1 TATAAATATAATAA
*
506720 TATAAATATCATAA
1 TATAAATATAATAA
506734 TAT
1 TAT
506737 GACGGGATCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
TATAAATATAATAA
Left flanking sequence: Indices 506206 -- 506705
TTCTTTTTGTTTTGACAGGAGTCGAAAAAAAAAGAAGAAATATTTTAATACGATTAGATTTCATC
CAAATGTAGTAGAGAATGAAAGGAACTATTCCTATTCCGATTTGATCGAAGTTGAAGAATCAAAG
AATTTCTCCTGCGGATTAGGAGAATTCTATAAGTTTTTCTTATTCTTAAATTATGACCCAAAGAA
GAAAAAGAATCGAATAATCGTTCTATGATGAAAATAGAATAACCCTCTTGTGTTTTGTGCATAGC
GGGTATACGCTTATACACTAGAAAATCAAATCTAAAAATCCCTGGGATGATTTATGAATTTGTAA
TAGATTTACGGGTTAAGGGGTTGTTGTTGAGCGATCTAAAACTGGAAAGGAATTTTAGAATTCGT
ATAGAAATGGAATTTTTTTTAATAATTATGATCTAAAGGTATCCATTAACCATAGTCTAAAAAAA
ATAGACCGATCAGTTGATTCGTTCCAATTCATTGATTTAATCCGG
Right flanking sequence: Indices 506737 -- 507236
GACGGGATCGTCGTCTTGACAAACATGAATAGAAATAGTTCTTAAAAAAAAATAATAATTGTTTT
TTTTCCTCGCTTTGAAAAAAAGTTTATAATGGGTTGGTCGTACCTTTACTGCAAGAATATGAATG
ACTCGCTATTCACTCGCGGGTTCTGGGTCATAATCATAAGATTATGCAGGAGAGATGGCCGAGTG
GTTCAAGGCGTAGCATTGGAACTGCTATGTAGGCTTTTGTTTACCGAGGGTTCGAATCCCTCTCT
TTCCGTACCTTCACCTAATTCACCAAGGTTACCGACCGCAATGTATCAAATTCCAATCGATACCA
TTATTCCAACAAAGCCCTTTTTTTTCCCTTACCAAATTCTATCTATCCCTGCCTGCTTCTTCCCC
TTCCTTCTTTACTGGTAGAACTGTTAGACTCGCATCGGCTTATTCAGTTTGTTATCCGTTTCACC
GAGAGTGAGGCTTTCCCACGGTAATGGAAAGGTCAGCGGAATGCG
Found at i:530791 original size:25 final size:24
Alignment explanation
Indices: 530763--530810 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
530753 AAAGAGGGGG
530763 TAGCTTCCTGGTGGATAGCTTGTAA
1 TAGCTTCCTGGTGGATAG-TTGTAA
* *
530788 TAGCTTCTTTGTGGATAGTTGTA
1 TAGCTTCCTGGTGGATAGTTGTA
530811 GTATAAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.42
Consensus pattern (24 bp):
TAGCTTCCTGGTGGATAGTTGTAA
Left flanking sequence: Indices 530263 -- 530762
AAGAGAAAGAAGACAATTTTCAATGTTCTGATAAGATGGAATTTGCCTTATTGCCTGGATATGAT
CCTCCTTGTGATAAGGATCCTCTTGTATCTTTTGTAGATAGGGACTTTAGTGTTCCCCCTGTATT
GCATGCTCATTCCGACAGGTCTCACTCATCCGATGAAAGTGAAGCTCAAGAAGAGCCTCCCCCTC
CACAGACTTCATCCTCGGCACCGGATTCAGGTTCAGTCATGCTTCGCCCTTCTTCACGTAAGTCT
ATTCTTCCCGTTGATTATGAGACATTCACTCCTCGACACCGTGCTTTTCTTGCTTCACTTGTCTC
CTATGATGAACCTAGGACCTATAAGGAAGCGAAAGCTCACTCGACCAAGAGGGAGCCTGCCCTAT
CACTACAAGCCGGAATTCAAACTAAGTTGTTGTTAACTAAACTAGCTTCTTAATATGACACTGAC
ACCCCATTGTCAGTGGTTACAAGGCTTTTAGTTAAAAAGAGGGGG
Right flanking sequence: Indices 530811 -- 531310
GTATAAGAATTAATGATGTCATCTACTAGAGACCATCATCTGGTCTTCCTCTGTGAGACTTTCAC
ATAGTGTTACTCTGCGCATAAAGCATGGTCTCGTCTTGCTGTGGCTAGCATGTTTGGTGTATATT
GCTAGTTAGCCATCCCTCGCATCCCAGCGCAATGAGAATCGATATTTTGAATCAACTCCACAAGG
AGAATCTATAATAGCATGTTTGCGCACGGCCTGGAATAGACGTCAGATCTCTCACTGAACAAAGC
TCTTCCAACTCCACCTGTACCACAACACCTGGACAATCAGAGGGCCCTTCTATTGATCTATCTTG
TATATGTATACCCATTAGCTTTTAATTGGTATACATATATTCCTCCTTCTCTCCCTCTCCGGATT
GATCAGAAGATCCTTTCTATCTACTCCGACTGAGAGATGGCCCCTTTGCGGTCGTGAAAGCCAAT
GCTGAACCCTTGCCGGCTTAATAGATCCAGGATGTGCCTTCTACT
Found at i:545060 original size:18 final size:18
Alignment explanation
Indices: 545037--545072 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
545027 AGGGTCGGGC
545037 CTCAACCAATCTACTTAT
1 CTCAACCAATCTACTTAT
*
545055 CTCAACCGATCTACTTAT
1 CTCAACCAATCTACTTAT
545073 AAGTAATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.03, T:0.33
Consensus pattern (18 bp):
CTCAACCAATCTACTTAT
Left flanking sequence: Indices 544537 -- 545036
GGTGGGTTACGGCATAGGCATTCTTCAAATCCGTGTGGAAGCATACGAAGAAGGATTCGGACCAA
GAGCTCCAGCCCGATCCCTGTGATCTCGTACTTGGTGTTCCCCTCTTTTCTGTTCGTCCTGGTAT
GGTATGTACCCTTTCACTCCAGGGAAGGTTCCCGAGCTGGCCGCACCAAATCCTGGAAGTGGCAC
CGCTCTGGCGATTGGCAAGACATATCCGAGGAGCGCTGCCTGAACGAAGCGTGGGCGTCAAGCAT
CAAGTGGAGGCGCCGAATCGTTGCAAGAGGGGGCGGGATCGACCGGTCAGAAGTCAAGCTGGCCA
AAAGGCATAGGGCCAAGGCTGAGCTGGCAGGCTCATCTCACTGATTGTGTGCTTTTATTGGATAA
CATCCATCAAGGGAAAAGCTCTATTCCGTTTCCACAACGTGTTGGTTTCCCGCTCAGCCCCCTAA
ACACTATGGCATCAAGGTCGGCAACCCCAAAGGAAAGGGTCGGGC
Right flanking sequence: Indices 545073 -- 545572
AAGTAATAAGTAAGGGGAAAGCCACGAATATCGGGGAAACTATTATATATAATTAATAGGTGTAT
CCTAGAAACACGGGCTAGAGTAAGCGCCAAGCGCTGGCCCATTAGTGGTGAAATTCCTGCTTGCC
TTTCATATCATAGTGAAAGATTGAGTGAAAGCCCACGCATGACCAATATCAATGGCTTGGGATCT
TTTCTTGGAAGAAAGACGAAGCGGAGATCTTTCTCTTTCTATTCATGAAAGAATGATAAATAGAA
GAATTCGAGTGACTCACAAGGGGAAAATCCAGATTGTTCCAAACGGGTTCTCAAGCAAGACAAGC
CCCAGGTAGTGGACTTAACTAACATCACTGCCAGACTCAATCCATAGAATCCGTTTCGTCTCAAG
CCTAACGGCTTCCTTCATTGCCCTTACCCGCCCGTTAACTAAAAAAAATCTTTAGTTCGAAGTTC
AATACTACTAATTAGTATTATTAGCTAGGAAGCAAATCCTGTAGT
Found at i:556074 original size:16 final size:16
Alignment explanation
Indices: 556055--556091 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
556045 AGTTTCCCTT
556055 ACTCAAACAAACCAAA
1 ACTCAAACAAACCAAA
556071 ACTCAAACAAACCAAA
1 ACTCAAACAAACCAAA
*
556087 CCTCA
1 ACTCA
556092 TTTTTTGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.57, C:0.35, G:0.00, T:0.08
Consensus pattern (16 bp):
ACTCAAACAAACCAAA
Left flanking sequence: Indices 555555 -- 556054
TCCGGGAACCAGTAACACGTAAACCATGTCAAACCAAGACCGATCAATATCCGAACGGAACGGAT
TCGAACTTCTCCTAGAAGAGTTTCCGGTGCGAAATGAAATTCATAGGATATATATATGAGTAATT
CAAAGGAAAAATAGAAATATTTGATTAGAAGCCCCGAGCCCGCGCAGGAGAGGAAAGGTTGGTTG
CACGTTTTCCGGGTGGGAGTAATGCCTCCCTGCCGATTACTTTCTCTCTCTCCCGAGGACGATGG
ATCTCGAACGGAAATAAATGAGCGGAACTACCCGACTCTGCGAACTCTGGCCTTCGGAGCACATC
CTATCATTTTTCTTTCACTTTTTTTGAGATCGTTGTGACCTAGTGCAAAAAAAGTCAAGCGAAAG
AAGCCCGCATACCCACTCTTCTTTCCCCCCCTTGCCTTGGGCTTGGGGGGCCTCGTTGTCACCTT
TGGCTCCAACTACTTTACTTTTAGCTTGCTGCCAAAGTTTCCCTT
Right flanking sequence: Indices 556092 -- 556591
TTTTTTGATTTCAAGCGCCCAAAATCGACCCGGCGGGTCTCGTATAAAAACAGAATTACTACAAG
TTAAGTAACAAACTCAAAACGGAATTGGAATTCTGGGTCAACGATAATCTTTTAGAAGACATCTT
ATACAATCGTAGATTTCATTATTTATATCTCCTTCTTTTTTGACTAGGTTGAAAGCCTGTAGTCA
ATTTTTGTGGACCGAATCAAGCAAGTTCATTTTAGGGGCGGGTATCAATCCGGCATCCCGGAGAA
GTTCAGAGGCTACCTTATTTAAGAAACTGGGTGTTTCTATATAAGGGTGAGCTCCGGGGAACTCG
GCAATTCTATTTTTTTTTATTTTGTTAAATACGCGTCCACTTCTTGAAATACAAGATTGCGTAAA
CAATCCTCCTTCTCTTTTCTTTTATCCTTTCTGTTATTATTAGAATTTGAAGAAGATGAGGAAGA
AGCGGGCGCCTGAGAAGCATTTAGATTTAGCATGTGGTTGATTAC
Found at i:565587 original size:40 final size:40
Alignment explanation
Indices: 565543--565622 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
565533 GCAGCTACTA
565543 TAGCTAATCAATTTCCTGCTTTCATTCCGTTTGGAATCTT
1 TAGCTAATCAATTTCCTGCTTTCATTCCGTTTGGAATCTT
565583 TAGCTAATCAATTTCCTGCTTTCATTCCGTTTGGAATCTT
1 TAGCTAATCAATTTCCTGCTTTCATTCCGTTTGGAATCTT
565623 AATGCGATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (40 bp):
TAGCTAATCAATTTCCTGCTTTCATTCCGTTTGGAATCTT
Left flanking sequence: Indices 565043 -- 565542
TGTGAGGAACCGGCCACTTCTTTATATACGTCGCCATTTGACGATCTGTCTTTAGTAGGTCGTCT
ATTCTTTCTTACCTCGGGATAGGAGTTCCCAATTTTATGACTATGAAACGGTCTCTGTCCGCCTT
ACCAGCTGTCTGAGATGAGCGTCCAAACCGAATCGATCTTTTTGCCCCCCTCAGCTATCCTTTCC
CGTCTTCGTTTAGCAGCGAACTCAAGGATGGACTTTATGTATGAGCTGAAAAGGAGGTATCCATA
GATACCAACCAAACTAGCTAGTCAGGGAAGGTAGGTAAGTCAGAGGCAGATCTAGGGAGTCTTTA
CTTCTTCGACTTCTTATTCATAGTTGAGATTGAGATACTCCCAAGCTCCACCAGCAAGCAGCACC
GGAGTGAATCGTAACCTTTCGATCTGTTTATAAGGGGTCAGTACTCGTCAAGAGACGAGACGTAG
CTAATGCTGTTTGATCACCGTCACGAGATTTGTTTGCAGCTACTA
Right flanking sequence: Indices 565623 -- 566122
AATGCGATCTGAGAGCGGATCTAGGAATCCCCTGGTAGTGGTAGTTGGGTTGGTGAAATCCGATA
ATCGATTGGCTTTAGAAAGGCGGCTTTCCCAACCTAGACATTGTAACTGAAAGTTCTGCCTACTT
GTAGGCTTAGGGTAGTCCTCGACAACCTTCTTCTTTTTCTTTTACTGGGCATTAAACGATTCTTT
ATCCTTTTCCTTTGCTCAGACCCAAGTTACCTGAAGTTCGTGTTCAACGCCAGCGACTTCCCATC
GGAATGGTATTCCTATTGTCCCCTCAATTTTGAGCACTCACTGATACAAGTTGTGGGGATTACAG
ATTGAGGGGCTTACATAGAAGCAAGCAGCATCAAATGTCATTCCTTTTGCATCCCCTGCTCATTC
TGTGTTCATCCGTACACCATCCTCACCTCTTTACCTCACAGTGGCTACCCTCATTGAGAAGATTG
CAGGGCCAGTCTCGAGTGGTTTTCTTAGACTGGCTTCAACAGATG
Found at i:606175 original size:18 final size:18
Alignment explanation
Indices: 606152--606188 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
606142 GCTATATCAC
606152 AACTTCTTCTATCTAAGT
1 AACTTCTTCTATCTAAGT
606170 AACTTCTTCTATCTAAGT
1 AACTTCTTCTATCTAAGT
606188 A
1 A
606189 TTATTCAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.05, T:0.43
Consensus pattern (18 bp):
AACTTCTTCTATCTAAGT
Left flanking sequence: Indices 605652 -- 606151
TATAGGCCAGGCAGAAGCCCTACGTCTCTCACTTTGATGAGTGGAACCTCTTGCCCCCTCGAATC
AGCAGTGTTCTTAGCGTACGGGATGATTATGACTGGAGGAAGCCCATTCTCTTGTGAATGAAGCT
GGTGCTCATTGTTCTCATAGTAAGAATAGTCAACCAGGGAAAGTCCCATTAGGAAGTGCAAGGGG
CACTGCAGATGACTTCCTTAGTCTAGTTCCGTGCTGTTCTCATTAAAAAGAAGAATCGCAGGAAG
AGCGGTAAAGCTCCGTAAAACCTTTTTTTAAGGGTAGCGCTGGCGTGAGGTCATTTCATTAGGTG
AGGTTTCTCTTTCGTGTCTTCAATGTGGGAAGATGAAGGGTGACTTCTTCTGCTGTTGAGGTATA
TGTTGTTTTGGACGGGATAGGTAATGGTTTTAGAGTTATAGGGGCTACGTAGTACAGCTTGGCTT
AGGGCGCAGCCAAGTCCAGTCATCTAGATATATACGCTATATCAC
Right flanking sequence: Indices 606189 -- 606688
TTATTCAACCTCTCTTTCCTCGGAACTTCAATTTCATCCCTCTAGCTAGGATGGTGGTCTACGAT
CATGAGAAGGACATAACAGAATAAAGTAATTTCCTTATCCAGCTACAACTCTCCTCCTTCCACGC
ACGGACAAGGATGGGTTGTTAAAACCTATTCATCTTTTTTTTGGTTCGATCCGGTTGGTTGGGAA
ATCTTTATGCTGGGCCCTAGGATCAACAGTGAGCCGCTACTCCCGAAGTTTCGTCCTGGTGTGTT
ATCTTTTTAGGCGACAGCATCAATCACTCCGGAAATAAACACCAGTTAGTAGAGCTGTTATAAAT
ATACGTATTTTCCAACCAAACGAACTGTCCAACGAACGGATGATCGGTGAGGAGTCGAACCTCAT
AAGCACGTCTTGAACACGCCGATCATGGACCTGGCACTCGACTGACAAACAAAGGAAGGAGAGTG
GATGAAAGAAACGCGGCTGGAAGGAGAGGCCCCGTCCTCGAAATT
Found at i:618389 original size:20 final size:18
Alignment explanation
Indices: 618338--618388 Score: 86
Period size: 18 Copynumber: 2.8 Consensus size: 18
618328 AGCTGGCCTA
618338 TCTATAAATATATATTAT
1 TCTATAAATATATATTAT
618356 TCTATAAATATATATTAT
1 TCTATAAATATATATTAT
618374 TCTATATAATA-ATAT
1 TCTATA-AATATATAT
618389 AAGATTCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
TCTATAAATATATATTAT
Left flanking sequence: Indices 617838 -- 618337
TTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCGAGTAGTGCTAA
TTTCTCCCTTTTTAGAATGGCTCCAGTGGTTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTG
TACCTTTTGATTATGGTATGGTATTGTCAGATCCGAACATAGGACTACTTTATTTGTTTGCCATA
TCTTCGCTAGGTGTTTATGGAATTATTACAGCAGGTCGGTCTAGTAATTAGGGGGCGGCCGTTCG
ATCGCCTATGAGACTAGGACCAATAGGTCAAAAATGGGTTTGTGCCGCAGGTGTTGAACGATCTA
CTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCATAAACCCTTTCTTTCATTCATCAATAGGC
CCTGGTCGGTCACTTTTCCGGGCCGGGATTGAAAAGTGGAAGTCATAAAAAAGAGATGTTTCTCT
TCGCACCTCAGATCAAGAAGAAGGGTAGCTTGTCAAGCTGGCCTA
Right flanking sequence: Indices 618389 -- 618888
AAGATTCGCTGTCTTTTAACCGGCTGTTCTTCTTTGTCAACGCAATTAAGGACCTATAGGTTCGC
CTACTTGACTTATGAAAGATAATGAGAATGGGTTATTCAAAAAGGAAAAGGCGCTACTATACAAT
ACATTAGTAGGGTAGGCTTTGCTAACTCAGCCGCTTACTTCTACTAATGTATTGTATAGTCGGGT
ATAGTATAGTAGGCGAGCGAGTTAGCGAAGACGCTTAGGCTAATAGATAAGAGAGCGTCAGTGCG
TAGCCTTCATTCTACTACGCTACGCAAAGGTTACGAAGTCACTTAGCTCGACGTTAGGAGAGTCA
AGTCAAGGGGGAACACCATACCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCTAAGT
CTAACCTTTCGCTCCCCTACTGAAAAGGGGCAAAGCCGCTTCGCACCACTGATAGACTACTTAAG
ATTCAATTCAAAAGGCCCTACTTAGTTTCGCAAGCCTTTGTCATT
Found at i:618395 original size:20 final size:18
Alignment explanation
Indices: 618338--618395 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
618328 AGCTGGCCTA
**
618338 TCTATAAATATATATTAT
1 TCTATAAATATATAAGAT
**
618356 TCTATAAATATATATTAT
1 TCTATAAATATATAAGAT
618374 TCTATATAATAATATAAGAT
1 TCTATA-AAT-ATATAAGAT
618394 TC
1 TC
618396 GCTGTCTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 24 0.67
19 3 0.08
20 9 0.25
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.47
Consensus pattern (18 bp):
TCTATAAATATATAAGAT
Left flanking sequence: Indices 617838 -- 618337
TTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCGAGTAGTGCTAA
TTTCTCCCTTTTTAGAATGGCTCCAGTGGTTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTG
TACCTTTTGATTATGGTATGGTATTGTCAGATCCGAACATAGGACTACTTTATTTGTTTGCCATA
TCTTCGCTAGGTGTTTATGGAATTATTACAGCAGGTCGGTCTAGTAATTAGGGGGCGGCCGTTCG
ATCGCCTATGAGACTAGGACCAATAGGTCAAAAATGGGTTTGTGCCGCAGGTGTTGAACGATCTA
CTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCATAAACCCTTTCTTTCATTCATCAATAGGC
CCTGGTCGGTCACTTTTCCGGGCCGGGATTGAAAAGTGGAAGTCATAAAAAAGAGATGTTTCTCT
TCGCACCTCAGATCAAGAAGAAGGGTAGCTTGTCAAGCTGGCCTA
Right flanking sequence: Indices 618396 -- 618895
GCTGTCTTTTAACCGGCTGTTCTTCTTTGTCAACGCAATTAAGGACCTATAGGTTCGCCTACTTG
ACTTATGAAAGATAATGAGAATGGGTTATTCAAAAAGGAAAAGGCGCTACTATACAATACATTAG
TAGGGTAGGCTTTGCTAACTCAGCCGCTTACTTCTACTAATGTATTGTATAGTCGGGTATAGTAT
AGTAGGCGAGCGAGTTAGCGAAGACGCTTAGGCTAATAGATAAGAGAGCGTCAGTGCGTAGCCTT
CATTCTACTACGCTACGCAAAGGTTACGAAGTCACTTAGCTCGACGTTAGGAGAGTCAAGTCAAG
GGGGAACACCATACCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCTAAGTCTAACCT
TTCGCTCCCCTACTGAAAAGGGGCAAAGCCGCTTCGCACCACTGATAGACTACTTAAGATTCAAT
TCAAAAGGCCCTACTTAGTTTCGCAAGCCTTTGTCATTGTCAGTC
Done.