123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037463
Parameters: 2 7 7 80 10 50 500
Length:  640906

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564--599	18	2.0	18	100	0	72	33	27	11	27	1.91
6914--6962	22	2.2	23	85	10	66	20	46	12	20	1.82
29861--29896	18	2.0	18	94	0	63	30	13	16	38	1.88
31228--31284	19	3.0	19	89	0	96	42	7	28	22	1.80
43849--43896	13	3.6	14	74	25	50	58	8	27	6	1.51
76611--76660	24	2.1	24	96	0	91	32	34	22	12	1.90
76925--76974	24	2.1	24	96	0	91	12	22	34	32	1.90
126249--126313	32	2.0	32	96	0	121	16	27	27	27	1.97
164454--164509	28	2.0	28	96	0	103	14	37	17	30	1.90
185268--185292	5	5.0	5	100	0	50	60	0	20	20	1.37
229427--229476	24	2.1	24	100	0	100	34	16	12	38	1.85
229689--229719	10	3.1	10	95	0	53	48	3	0	48	1.17
234474--234501	14	2.0	14	100	0	56	21	21	7	50	1.72
234519--234564	22	2.1	22	100	0	92	36	17	0	45	1.49
235018--235054	18	2.1	18	100	0	74	32	32	10	24	1.90
237305--237341	17	2.2	17	100	0	74	56	0	10	32	1.34
255756--255787	15	2.1	15	100	0	64	62	0	6	31	1.20
260222--260252	16	1.9	16	93	0	53	29	12	9	48	1.73
260281--260305	12	2.1	12	100	0	50	60	0	24	16	1.36
262615--262656	21	2.0	21	85	0	57	21	4	2	71	1.16
270415--270460	23	2.0	23	100	0	92	47	17	8	26	1.76
274593--274667	21	3.2	24	70	16	68	10	24	8	57	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283579--283624	23	2.0	23	100	0	92	26	8	17	47	1.76
300354--300392	21	1.9	20	89	5	60	30	10	25	33	1.89
309751--309799	25	2.0	24	92	4	80	42	4	8	44	1.53
309752--309806	25	2.2	25	87	6	76	45	3	9	41	1.53
311223--311264	18	2.3	18	100	0	84	19	23	11	45	1.83
314233--314275	21	2.0	22	95	4	79	46	11	18	23	1.82
320591--320621	15	2.1	15	93	0	53	87	0	3	9	0.66
326731--326764	16	2.1	16	94	0	59	26	2	5	64	1.30
369474--369503	15	2.0	15	100	0	60	26	0	26	46	1.53
409758--409826	24	2.9	24	72	8	77	33	8	33	24	1.86
416906--416954	16	3.1	16	88	5	73	8	22	18	51	1.72
416906--416953	15	3.1	15	90	3	69	8	22	18	50	1.74
427498--427535	18	2.1	18	95	0	67	63	5	7	23	1.42
441748--441790	18	2.6	16	82	10	52	20	20	32	25	1.97
491577--491614	18	2.1	19	90	5	60	52	21	23	2	1.59
495049--495091	8	5.2	8	88	5	50	46	0	9	44	1.35
503114--503154	18	2.2	20	86	8	59	56	9	0	34	1.32
506706--506736	14	2.2	14	94	0	53	58	3	0	38	1.15
530763--530810	25	2.0	24	87	4	69	18	12	27	41	1.86
545037--545072	18	2.0	18	94	0	63	30	33	2	33	1.72
556055--556091	16	2.3	16	95	0	65	56	35	0	8	1.29
565543--565622	40	2.0	40	100	0	160	20	22	12	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606152--606188	18	2.1	18	100	0	74	29	21	5	43	1.75
618338--618388	18	2.8	18	94	5	86	45	5	0	49	1.26
618338--618395	18	3.1	18	90	5	62	44	6	1	46	1.40

Tables:   1

The End!