Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_057143
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 538434
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Found at i:50615 original size:36 final size:36
Alignment explanation
Indices: 50526--50615 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
50516 TGCTTCTTCC
* * *
50526 CCTCATTATCCATATCCATAATTGTTTCATTATACT
1 CCTCATTATCCATATCCTTAATAGTTTCATAATACT
* *
50562 CCTCATTATTCATATCCTTGATAGTTTCATAATACT
1 CCTCATTATCCATATCCTTAATAGTTTCATAATACT
50598 CCTCATTATCCATATCCT
1 CCTCATTATCCATATCCT
50616 CCACATTCTG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.27, C:0.27, G:0.03, T:0.43
Consensus pattern (36 bp):
CCTCATTATCCATATCCTTAATAGTTTCATAATACT
Left flanking sequence: Indices 50026 -- 50525
AGATGCGCATGTAGTCGTAGTAGTCGGCCCAGAATGCCTCCCTCTGTTCTATACTATAGAATAAG
GTCAAATTTGATCATCTTCTTAACTAAACCACTGGTTAGACTTAGTTTTGCTTATTTTTATTTTC
TTTTTCTTTATATTTATATCTGTGCTATACACCACGATCTCATATATCGTTTGATTCCTCATAAG
GGGTTTAATAATATATTTCTCTCTATACTTAGAATAATGATGTAATATTATAATACCATCGAATC
TCGATAAGTTATGAAAGTAAACTCTTCGAATCTGATTTTCAGAAGATACCTCACTTAATCGCTCT
ATAAACTTTTTCATCATATTATCACTTTTATTTAAAAAACTATTATCCTCAGTATTCTCCAATTT
GAGGGGATTATAGAAATATGTGTTAAAGTCTGATTTCTTCTTCTGAGACTTTAAATCATCACCCG
GCCGTACCACTAATAAACCACAAGCGTAAGGCACATGCTTCTTCC
Right flanking sequence: Indices 50616 -- 51115
CCACATTCTGTATGAGAATTTTTTTATCCTCCACATTATCCTCCACCACTTTATCCAAGATAGTT
TCAATATCCGCAACAATGAAGGGGTCCGGATTCATATCCTTACTCTTAGGTTTGAGTGATTTTAT
ATATTCTGGGTATCGAGGAGGCTTTCGATCAATTGGTGTCGGATCATAATCCCCTATGGGACTAC
TATTCAAGATTTCCCAGATTTTATCATCAACATCTTCAGGGCTAATTGCTAACTTTTCATCTTTA
TCATGAATATCTATCATATATGCTTGAATACATAGCCCGTATAGTTTATCCGCTCCATATATATC
TAATCGAGTAGATATGGCATCTAATATTTTCTTATATATATGTTAGGAACAGCATGCCCGTTAGA
CTCTAATAAAGGAATGGCGTTTCCTACTATGAAGTTGACGCGATCTTTTGTAGAATTGCTTTTTG
ATGTATAACCAATTGTAAACTTACTCTTAGATGTAAAAAAATATT
Found at i:52710 original size:12 final size:12
Alignment explanation
Indices: 52693--52723 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
52683 TTCCTACTTC
52693 CTCTTCTCATTT
1 CTCTTCTCATTT
52705 CTCTTCTCATTT
1 CTCTTCTCATTT
52717 CTCTTCT
1 CTCTTCT
52724 TTTGCTTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.35, G:0.00, T:0.58
Consensus pattern (12 bp):
CTCTTCTCATTT
Left flanking sequence: Indices 52193 -- 52692
CCACTTAATAATGATCCATAAGCTTCACGAATATCATTAGACATAGCTAAAACAGTTTTACCATA
TATCAATGGCATAAAGAGACTTTTGATGAGCTTTCTCGATAATTTCGATTCTATCATATTATACT
TATTAATATGTAATTGATCTTTTAAGTATTCTAGAAGATCCGTCCTTAGAGAGGTATATAAATAT
TTGCTTTCATTAGAAGAAATAAGATTGGTATTTTTAGCCAGCGTTTTATTAAGCAAAAGATAACT
CATGATTTGATAAGCACTAGCAGAGGCATCTTGACTCACAGGTATCCTATTAAAACCTAGAAGTC
TTTCTTCATAACTACTAACTCTATCACAAGATAGAAACTTAGCTAGGAACTGAAAAGGATCATTA
GCCTTAAAACCAAAATAGATTATTTTAATATCCAATTTCTTTTTTTCATTATCAGATAGAGAATG
ATAGTCTACGATTTTATCTTCCTGCGTTCCTGGATTTCCTACTTC
Right flanking sequence: Indices 52724 -- 53223
TTTGCTTGGGTTTGGCATTCCCATCATTGCCTATTGTGACGACGGGGACGAACAAACCAGTTCGG
ACGGAGAAACCGACGCTGGCATAGGCGCACAGGAATCCATTGGAGCTCGTGCTCCAGGAGAAGGT
GCGTCCAATATGGAGTTGGAGTCTGCTCCTGAATCGCACAAAAGGAAAGCGGATCGGGGGGATGA
TGTCGGCCCCTCCTCGCGACGAAGAATAGAGGATTCTGCTTCTGCTTCTGAGAACAGTAACTCAA
GCAGTTGGCGGAAATACCTAAACCTATCCTCTGATTCAGAAGGTCAGGGTCAGGGGCCGGAAAAT
AACGAAGCCGAACCCGCTTCGAGAAAAAGGAGCGCTGATCCCAGAGAGGACGTCGGGCCTTCTTC
GGTAAGGCAACGAGTGGATTTGCTGAACGCTCCCGGAGCAGGCGATCCTTCTGGCCCTTCATCAT
CCATATCGGAACTACGAACGTATCTGAAGGAGTTGGGAACAGCAA
Found at i:56824 original size:14 final size:13
Alignment explanation
Indices: 56797--56821 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56787 TTCTTCCCAC
56797 TAAACGAATCCCG
1 TAAACGAATCCCG
56810 TAAACGAATCCC
1 TAAACGAATCCC
56822 CGTGCTTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.16
Consensus pattern (13 bp):
TAAACGAATCCCG
Left flanking sequence: Indices 56297 -- 56796
CCTATTGTCTTGATTAGTTCCGTGGGGCTTGAAAGCCCCTCCAGTGTTCAAGTGGTGAAAGCTTC
AGGAGAACCTGTTCAATCCTTTAGGAGGAAGATGGAGGGTTCTCGTACTCGCTTGAAAGCGCGGG
GATGATGCCCTGACTAGAACCTTTCTGAGCAGCTATTGAGCCTATCCTATTAGCTTCTTGCCCGC
ATCCCTTCGCCTTGATATTCGAATAGATCAGTCTTCTTCGCCAAGTAAGAACTTCTATAATAAGG
TGAGCCCATGACTTTGACTTATAAGATTCGGATTTCTAATCAATATCAAAGTCAGCAACCTTTTC
TAAGAGGCGGTGGCTTCCTAGCCCCAGGACTGATACCGTACTCACCGACCGAAAGAACAAGGATG
AAAAGCCACTAGAAGACTGAAGCTTTCAAGCCCTAAGAAAGAGTCCCATTCAAGCTCCTGCTCCT
AGAGAATTTTGGTAGTACTCGATTGCCTTTCCTTCTTCTTCCCAC
Right flanking sequence: Indices 56822 -- 57321
CGTGCTTGAGTAGAAGTGGCTTCCTATCTTCGCCCTCTAGCGTTCAATCTCCACTTTCATTTTCC
CGGGATTTTAGGCTGCAAGTCCATTTCCGCTCGTAGATGGGATCTCAAATAGGCCTTTTTGCGTT
TTACCGGGAAAATTGCTTGTTTTCGGATTTCTCTTCCTAAGGCAGCATCTCAATGTGATAAAAAT
CCCCAACCCCCGTGTTTTGGGCTTGTTTTTGATCGGATTGGCAGGTTTGTTTGGAGTGGAGGATA
AAGACTTAGATTCTGATTCAGTGCCCTTCTGATTCTGTGCTGTCTGAACAAAGTATGCAAGCAAC
CCCCTATTCCACTACGGAGATTGAGTTACCTGTCTTCGAACCTAAACTGGCTCACTAGCCCACAG
AACTTAGATTGGAATGGATTGTGAATCGGATTAAATAGTTCATGAGCTTGACTAAACCGTACTCT
CTATTCTTTCTACTTGAGCTATCTCGCCACTTTCGGACTTAGCCT
Found at i:110779 original size:18 final size:18
Alignment explanation
Indices: 110739--110781 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
110729 ACCGCCCTGC
110739 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
110758 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
110775 CATAGTC
1 CATAGTC
110782 AACAAGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 110239 -- 110738
ATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCA
ATCGGGGAAGGTTTTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAAC
GAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACG
CAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGAC
GAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATTGGATGATCGGGCCGAGGTT
CGACGTAGTTGACTCTTCCCCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTT
TCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGCGAAACGCATTTTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 110782 -- 111281
AACAAGGTGGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAAAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:124620 original size:18 final size:18
Alignment explanation
Indices: 124597--124632 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
124587 TCCACCATAC
*
124597 GAAACTCTAAATTCTGAT
1 GAAACTCGAAATTCTGAT
124615 GAAACTCGAAATTCTGAT
1 GAAACTCGAAATTCTGAT
124633 TGACAGGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
GAAACTCGAAATTCTGAT
Left flanking sequence: Indices 124097 -- 124596
ACCCATACAGATGGATGCACGACGGAAAAGCCAGCTGTTGACCAGCTGGATTAAAAGAGCTCTTC
TTCGTCTTTCCGGCCCCCCACTCGTACTGATACTGATTGTGCTTTCCATGTTTGCTTTGCAATAT
TTTGTATTCTTTTGAGATAGCATTTGGTCTTACAAAAAAAAGTAAGTTTTTTCATTGATTGCGGA
TTGCGTTTCTACGCTTTCAAAAAAGTAAGTTTTTTGGGATGTTAATGTCCTTCGCTGGCTCCGTG
ACAACAGATACATTTACATAAAAGAATTGTGGACCGACCAAGCGGTAAGGCCTCCCATGTGGCGC
ACCCTCAGACCAATAGAAGGGGATTTCGAACTAAGCTAATGAAGGTGATTCGCTCCAACTACGGG
ATGAACGCCAACCCCGCCGGGTAGAGCTCCTCTTCCGTATCTGTATATCCGCATCTTCCTCAGAT
GTAGTTTCTATGCCTTCAGAAAGGCCTATTATTGATCCACCATAC
Right flanking sequence: Indices 124633 -- 125132
TGACAGGTTCTATTATGGATTCCTGTGGGTTCCACGAGCGAGTCTGACCAGTTCCACTCGCGGTT
GCACCGACTCAAGACTAGTTCCAATAGATATTATGACGGGGTGATGGGTCGTGCACTTGCAAGCT
CCACTCTTGATTTCGAGGAGGGCAAATGCAGATGATTTCGGTCATTCATATGAGGCTAATGAATC
AAAACCGTGCCCAGCAAGACTGAATCTAGGCCTCGGGCTCACATGGGCGATCCATTCCAAACGTA
GTGAAAGGATCAAATCCAAAGAAAGGTTTTGAAGGCATAAGCACATAGATCACTACGCGCTAAGC
CAATTCCATTTGAAGTCTTACCCATAGGAAGATGGATCTCTCCAAACAAAGAGATGAGCTATCCA
CAAGAAAAGACGAGGACAAAACAAAACACCCGAATTAGATTATGTCATTCTTTCTATTTTCAAGA
GTCTCCCATTCAGCAGTTTTTTCTTCGGCGGAATCTAACTCTCCT
Found at i:156089 original size:22 final size:23
Alignment explanation
Indices: 156053--156101 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
156043 GAAGGACAGA
*
156053 TAGGGACTGTCAGGTA-TGGCAGG
1 TAGGGACTGCCAGGTAGT-GCAGG
156076 TAGGG-CTGCCAGGTAGTGCAGG
1 TAGGGACTGCCAGGTAGTGCAGG
156098 TAGG
1 TAGG
156102 TAGCTGAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.20, C:0.14, G:0.45, T:0.20
Consensus pattern (23 bp):
TAGGGACTGCCAGGTAGTGCAGG
Left flanking sequence: Indices 155553 -- 156052
TGTAGGGACCTATTTACACCCGGTTCTTTACTTTAATTAACAAGGCTGCTTTCTTTCCCCCTTCT
CGGAGATTGCCAGGCCAGGTGTGAGACGATCCCTTCTCGCCAAGGAAAGAAGTCCAATAGCAGCT
GATCTTAGCTTTGAGCGCTTATACCTTTTTTCCCAGCTACCTCTGAGAGTGGTCAAGAGCTTATT
GGAATCTGAGCTTTTTCAAGCATTCCCATAGGTTGAAGGTCAACCGAAGCCAATATCCATCTCTG
TTAATGAATGCTCCTACTCCTATCGGTTCTATATCCAATTCCAACAGCTAAGGAGTTGGAAGAAG
GAAAGAGAGAACTACTTACTTCTTCTTATGCTGATCAGGCATCAAGCCTATCCCTTGACCCTTTC
CGGGATCAACTATAAAGTAAAGAAGTTCCCAGTCGAAAGAGAAAAGGCTAGCTTGTTTCACTTCA
TACTCACAGGTTCGGGATCTATCTCATGAGCTAAAGAAGGACAGA
Right flanking sequence: Indices 156102 -- 156601
TAGCTGAGATGGATAGAGCTACAGGTTCAATCCAATAAGACTAGTTAGACAGTGAAGGACGCTAT
GGATCCCTCTTCTTACGAGGAAGAGGGTTGCCTATACTAGACTGACACTAACAGGGACGGCATAC
ACTCAATTACTCTCATCTGAACCCTTTACCTTTTTGTGTAGCGAAGCAGAGCCGGGTCACCATCA
AAGGCAGCTTCAGTTTCAAGTGAAAATCGAAGTCTGGTCTTCCCGTGCAGTCAGGCAGAATCAGA
AGAAAAGAGGTAATAAATGGGCAGCCACTTCTACTCACCGGGATTTATTCCTAAACCTAAAGCGA
GGACTTTGCCCCGCTCTCCTTAGAAGCCTTGGTTGAACCGCTTGACTCTATCTCCGTTGATTACT
TACTCTTACTATTGGATTGAGCTATAGAAGCTATTTGACCTACGTGAACACTTCAGCTAGAAAAA
CTGTATTGATAATTCAATACATTCTATTGACAAAGACAGGAAAGA
Found at i:170427 original size:4 final size:4
Alignment explanation
Indices: 170420--170458 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
170410 GCTATATATA
170420 TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT
170459 AAGCTAACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Left flanking sequence: Indices 169920 -- 170419
CAAAGGAAGGGACACCCCTTTCTAAAGAAAAGACTAAGAACCTACGGCAAATGCATACAGCCCCA
AGGAAGCTTTCCCCCCCGATCCCGATTAACAACCTTTAGGGTTGTCCTATCGATAACTAGAAGAA
AGAGCGGAGTCGAACTGACCCCACCACCCCCAACCAACCTTAGAATACAAAGTCGTTATGGAACT
CCGCATAAGGGAAATCCCTGTATTTAGTAAACATCAAAATATAGTAAAGAATCCGTACTACTTTA
CAAAGCCAGTTCCGTCGCCGGTAAGAAAATAACTCAACCAACGCCAATTGAAAGAGCCCTAGGAG
TCCCGGGAAGATAGAGGCAAGACAAGCCAATCCGCTATTCTGCCTTTGCGCAGATTGATCACTCG
CGGCACACAAGCTAGATGATCGATGATTCCAATGCGCCTCGATTTCACATACATCTTCGCTTTCT
CTTTCGTAGAAAGCCCTACTTTCATAACATCTGACGCTATATATA
Right flanking sequence: Indices 170459 -- 170958
AAGCTAACATAATTTCATTATAATACATCACTTGGCACTAGACTGAAAGTCAAAGAGAGAGTACT
ATAGGAAGCGTTACGTTCAGATGCCCTTAACCCTACCCGAAGGAGAAAAGAAAACGAAGAAGACT
AAGCCCAAAGAAAGCGGGGAAGGTGGGTGTGCAAGGCGTTATCGATGATTACTTTCAGCTAGTCA
CAAAAGTTCAGCTCCGCTCTTCATGCGGCCAAAGACTTTTTCCTCTTCTATATACAATGATAGTG
GCTAGCTCCTTTAGCATCTTCGGGTGCCTACTCCTCTTCCGCAGATTCGGATTAGTAACAAGGGA
CCTAACTAGGCTCATAGTCTTTACCCAAGAGATGTCCCTGCTTCGATCTTATAAAAAAATTACCC
ATCATTTGCACATCGATACGTACCTGCTACTGCGGAATTGGTGCACCTTAACGTTATAAGATTCC
TTACCCTTACTTTAGCGGAAATGGCACTTTCCAGCAAGAAGAAAG
Found at i:175676 original size:13 final size:13
Alignment explanation
Indices: 175655--175691 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
175645 GCTAATACTA
175655 ATAAT-TAATAAT
1 ATAATATAATAAT
175667 ATAATATAATAAT
1 ATAATATAATAAT
175680 ATAATATAATAA
1 ATAATATAATAA
175692 AGTAAAGGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 5 0.21
13 19 0.79
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATAATATAATAAT
Left flanking sequence: Indices 175155 -- 175654
AAGGGACTTCTACCAATCTTAAACAAAGGGCTAGAACCCTCGCCAGATAGGCTATCCACTATGGT
TTCGGAAAGGAATAGGGATAGAAAGGAAGGGAGATGAAATGCTCAAAGGAAAAGGAATTCTTTCA
GAAGCTCAGTACGGAGTGAATAAGGAAGGGTAGTTTGCAACTTCAGTAGTGAACTTTCATTCATC
CTTCTTGGGAGAAATTGATAATAGAACAGAACGCTAGTCAACTGATTTTAGAACTTTCAATAGGC
AGTCTGCAAGACTGTGAAAGCTAAGGCAGTGTAACTGAGAGTAAAAGTTAAGGATCGGGATCGTC
TGTGCTATGAGTTTCTCTTCCTCGATAGTGATCTAAGGCAAGTAGAAATTCCTCTTACTCAATAG
TGGCTAAGGCAAGAAAGTATGATCAATGATCTTCTGCTAATGCTAGCGTCTTTTTCATCTCTAAT
CTCATCTATGCTTCAGGAAAAAGTTTAACCTACCCGCTAATACTA
Right flanking sequence: Indices 175692 -- 176191
AGTAAAGGGCTGGCTGCTCTCCTTAATTTCAAATTGAGTCGTTTTTGCTCCTTGCCCTTAGTGAA
GCGAGTGGCTTCTGCTCCCCAATTTAGCATTTGTGAGCGGCTTTCGCTTCTCTTCTTTTCAATCT
AAATCTTCTCTCTTTCTCTTTCTGTGTCTATCAATCTTCCCGCCCCAAGCCCCTGTTGTCTTTAG
CGCTTGATTCTTTGATAGAGATCGACCCGCTTTCATAAGCACTTGTTGGCAAGTTCGGAAGAAGG
CTTTGAGGGGAACTAACTCGATGTGGCTCCGGTTCAGTACTGCCTCTCGCTTAAAATCTCTTCCA
GCCAAGTTGCACTAACAGGCTTACGTAAAGTAAATAAAATTTTAGTGACTACATGCGAAAGCTTT
TGCTTCTTCCTTCCCTTCTGCTGGCAAGTAGCTCTCCTTTTTTCCTGTAGTTCAGGATTCCCTCT
CTATGCCCATATCTATTTAGTCAAAAGGCTAGTTCAATCGCTCTG
Found at i:185035 original size:15 final size:15
Alignment explanation
Indices: 185015--185044 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
185005 CAAACTCCTA
185015 TTGAAGGTATTGATT
1 TTGAAGGTATTGATT
185030 TTGAAGGTATTGATT
1 TTGAAGGTATTGATT
185045 CCACCGCGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (15 bp):
TTGAAGGTATTGATT
Left flanking sequence: Indices 184515 -- 185014
TCGAACGAAGCCTTGCACCCCTCCCTCGATGATAGTAGCTGGGTGGACTATTGGATACGGAACAT
AGAACTACCAGGCGAAGGAGAGAACCCTGGGATCGGCTCTCGTCTGCTATGATCTCCCCAGTAAA
AATCTCGGATTTGTAACCGAACGAGAGTTGTTGTTGCGATTTCTAAATGAAATTGAATTTCAATG
TTTCCCGCTAAGCATTAGATTCGCTTCGCTGGGGCTATGAAATGTATGCATATGAAAACCTTCCT
ACTTAGAACAAGTAATTGTCGTCGATCAACCCTACCTTCGAATTTTGCGTATAGCACCCCCGGTC
TTGAACTGACAGGAATACAGGCTTTGGTATCCAAAGTGAAACGGATACTAGTTTTAATCATGAGT
GGGGTAACCCGTCCCCTCTCGAGCCGTCTTTACATCTGCCTATGTTGTATGGTTAGGGATGAACC
GCAACATGCGCTCGCTACTTCTTGCTCGAGCAACTCAAACTCCTA
Right flanking sequence: Indices 185045 -- 185544
CCACCGCGACTGCTGCTTCATCTTCTTCTCATTCCCCCGCTCCAGCCATGCTGGCTGCTGCTATC
TCAGCTCGGTCAACTGGCTCTGGACCAATAGATGGGACTGAATGTTTGAACCTCTGCATCTCGAA
ACTTGGAGACTAGTTCTCAATGATCGATCGATAACTAACTAACTTCTGCCCGAACCCACCTATTT
ACGCTTCATTCCGATCCCTACGCACTCGCACTGGTTTGGAGAGCTATTGAGACGAATCCGGTGTT
TGGCCCTATATAGGTTGGCGGGGGGGCTACAAAATCCGCTGAAACGAAAATCCAACTAGTCCCCA
GTAATCCGAATGGAGCTTCGTATGGTGCGCAAGGTGCAAAGTCTACTTTCGCACGCAGAATCTAC
TGAATCCACTGCTTAACCAACTGTGGCTATACGATGCGATGATAAAAACATCCGCTGTTGCTGGA
CCACCCCAGCCCGTGCTGCCTTAATTGTTTGCTGGTTCAACGGAT
Found at i:206856 original size:15 final size:15
Alignment explanation
Indices: 206832--206879 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
206822 AAAGAAGAAA
*
206832 AAACCTAAGGGTAAG
1 AAACCCAAGGGTAAG
206847 AAACCCAAGGGTAAG
1 AAACCCAAGGGTAAG
*
206862 AAAACCCAAGGCTAAG
1 -AAACCCAAGGGTAAG
206878 AA
1 AA
206880 GACACTACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 16 0.53
16 14 0.47
ACGTcount: A:0.50, C:0.19, G:0.23, T:0.08
Consensus pattern (15 bp):
AAACCCAAGGGTAAG
Left flanking sequence: Indices 206332 -- 206831
TTTTAAGTCCCCTCCTTCCAAACTTGGGGTTCTTAGAAACAACAAAAGATGATAATATAATTAAA
CACAAAGGAATCGCTAAAAGATTAGCCTCTTTTGAATGGTTTGATTCTCAATACAAGAGGTGAAG
AATACCGTGGATAATTACTTCAAAATAGAGTGGAAGGATCTAAACATAATCAAAAAGGAAAGCAA
AGTTATGCTTGCTACCGGTAGCAAAAGGGATCCTGTCTATGATAATGATAATAATTGGGTAGACA
CTCGTCCTAAGGACGTAACATACGAGGATACCTCACTCAATTCTCAAATTGAGATTGAACTTGTT
TCAGGTGATAAGATTCTCAATCAAGAAAAAGAGAAAAAATCAGCTTATTGAGAAACTGAAGAATG
ATATTCAAGAGATGTCATCCAAAATGGAGCTCCTGCAAAAAAGGCAAAGGGTTGCTAAGATTTCT
AAGGTACCGGCTATAACCAAACAGTTGCAATCCATAAAGAAGAAA
Right flanking sequence: Indices 206880 -- 207379
GACACTACCTAACACCTAAACAGGCTACCCTAGTCGAATTGGTTAAGCCCAGAGGGAACTGAACC
TTATAGATAGGCCTTTTCACTTAAATAGTTATTTATCCCGATTGAAAGTAGTGGAAGATAGGTAT
AGTGCCTAGTAGCATTACTAATACTTAAAGATTAAGTAGTGGACATGCCTACTTGTTGATGAGTT
TCGGTACTCTTGGTTTACCTCCGTTTTCCGTCCTTTAATGAATAAGATCCTTATGTTTGACTAAG
GACCTTTGCGCTAACATCAGTGGGAAATAGCTGCTCCTATTTCTATTCTATATACGCAAATATCT
GTTTGTGATGAAATCGACTCTCACCCACCGTAGACAGAGTTAGTAGTACACCTTCTCATACAGTT
TGAAGATCGGTGAAAGGGTTGCCCTAAAAAGAGAGCTCCAAGTGAATGCCAGTAAGAGAAGGTCT
CCTCTAACAACGTCAGGCCTTAGCCCTCTTTTGATCCCGAATAAG
Found at i:206868 original size:16 final size:16
Alignment explanation
Indices: 206831--206879 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
206821 TAAAGAAGAA
*
206831 AAAACCTAAGGGTAAG
1 AAAACCCAAGGGTAAG
206847 -AAACCCAAGGGTAAG
1 AAAACCCAAGGGTAAG
*
206862 AAAACCCAAGGCTAAG
1 AAAACCCAAGGGTAAG
206878 AA
1 AA
206880 GACACTACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 14 0.47
16 16 0.53
ACGTcount: A:0.51, C:0.18, G:0.22, T:0.08
Consensus pattern (16 bp):
AAAACCCAAGGGTAAG
Left flanking sequence: Indices 206331 -- 206830
GTTTTAAGTCCCCTCCTTCCAAACTTGGGGTTCTTAGAAACAACAAAAGATGATAATATAATTAA
ACACAAAGGAATCGCTAAAAGATTAGCCTCTTTTGAATGGTTTGATTCTCAATACAAGAGGTGAA
GAATACCGTGGATAATTACTTCAAAATAGAGTGGAAGGATCTAAACATAATCAAAAAGGAAAGCA
AAGTTATGCTTGCTACCGGTAGCAAAAGGGATCCTGTCTATGATAATGATAATAATTGGGTAGAC
ACTCGTCCTAAGGACGTAACATACGAGGATACCTCACTCAATTCTCAAATTGAGATTGAACTTGT
TTCAGGTGATAAGATTCTCAATCAAGAAAAAGAGAAAAAATCAGCTTATTGAGAAACTGAAGAAT
GATATTCAAGAGATGTCATCCAAAATGGAGCTCCTGCAAAAAAGGCAAAGGGTTGCTAAGATTTC
TAAGGTACCGGCTATAACCAAACAGTTGCAATCCATAAAGAAGAA
Right flanking sequence: Indices 206880 -- 207379
GACACTACCTAACACCTAAACAGGCTACCCTAGTCGAATTGGTTAAGCCCAGAGGGAACTGAACC
TTATAGATAGGCCTTTTCACTTAAATAGTTATTTATCCCGATTGAAAGTAGTGGAAGATAGGTAT
AGTGCCTAGTAGCATTACTAATACTTAAAGATTAAGTAGTGGACATGCCTACTTGTTGATGAGTT
TCGGTACTCTTGGTTTACCTCCGTTTTCCGTCCTTTAATGAATAAGATCCTTATGTTTGACTAAG
GACCTTTGCGCTAACATCAGTGGGAAATAGCTGCTCCTATTTCTATTCTATATACGCAAATATCT
GTTTGTGATGAAATCGACTCTCACCCACCGTAGACAGAGTTAGTAGTACACCTTCTCATACAGTT
TGAAGATCGGTGAAAGGGTTGCCCTAAAAAGAGAGCTCCAAGTGAATGCCAGTAAGAGAAGGTCT
CCTCTAACAACGTCAGGCCTTAGCCCTCTTTTGATCCCGAATAAG
Found at i:226527 original size:25 final size:24
Alignment explanation
Indices: 226499--226546 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
226489 AAAGAGGGGG
226499 TAGCTTCCTGGTGGATAGCTTGTAA
1 TAGCTTCCTGGTGGATAG-TTGTAA
* *
226524 TAGCTTCTTTGTGGATAGTTGTA
1 TAGCTTCCTGGTGGATAGTTGTA
226547 GTATAAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.42
Consensus pattern (24 bp):
TAGCTTCCTGGTGGATAGTTGTAA
Left flanking sequence: Indices 225999 -- 226498
AAGAGAAAGAAGACAATTTTCAATGTTCTGATAAGATGGAATTTGCCTTATTGCCTGGATATGAT
CCTCCTTGTGATAAGGATCCTCTTGTATCTTTTGTAGATAGGGACTTTAGTGTTCCCCCTGTATT
GCATGCTCATTCCGACAGGTCTCACTCATCCGATGAAAGTGAAGCTCAAGAAGAGCCTCCCCCTC
CACAGACTTCATCCTCGGCACCGGATTCAGGTTCAGTCATGCTTCGCCCTTCTTCACGTAAGTCT
ATTCTTCCCGTTGATTATGAGACATTCACTCCTCGACACCGTGCTTTTCTTGCTTCACTTGTCTC
CTATGATGAACCTAGGACCTATAAGGAAGCGAAAGCTCACTCGACCAAGAGGGAGCCTGCCCTAT
CACTACAAGCCGGAATTCAAACTAAGTTGTTGTTAACTAAACTAGCTTCTTAATATGACACTGAC
ACCCCATTGTCAGTGGTTACAAGGCTTTTAGTTAAAAAGAGGGGG
Right flanking sequence: Indices 226547 -- 227046
GTATAAGAATTAATGATGTCATCTACTAGAGACCATCATCTGGTCTTCCTCTGTGAGACTTTCAC
ATAGTGTTACTCTGCGCATAAAGCATGGTCTCGTCTTGCTGTGGCTAGCATGTTTGGTGTATATT
GCTAGTTAGCCATCCCTCGCATCCCAGCGCAATGAGAATCGATATTTTGAATCAACTCCACAAGG
AGAATCTATAATAGCATGTTTGCGCACGGCCTGGAATAGACGTCAGATCTCTCACTGAACAAAGC
TCTTCCAACTCCACCTGTACCACAACACCTGGACAATCAGAGGGCCTTCTATTGATCTATCTTGT
ATATGTATACCCATTAGCTTTTAATTGGTATACATATATTCCTCCTTCTCTCCCTCTCCGGATTG
ATCAGAAGATCCTTTCTATCTACTCCGACTGAGAGATGGCCCCTTTGCGGTCGTGAAAGCCAATG
CTGAACCCTTGCCGGCTTAATAGATCCAGGATGTGCCTTCTACTC
Found at i:236071 original size:16 final size:16
Alignment explanation
Indices: 236046--236092 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
236036 TTTTCCCTCG
236046 CTTTTCTTTTTTTATTT
1 CTTTT-TTTTTTTATTT
236063 CTTTTTTTTTTTATTT
1 CTTTTTTTTTTTATTT
* *
236079 -TATTTTATTTTATT
1 CTTTTTTTTTTTATT
236093 CCCTTCCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 12 0.43
16 11 0.39
17 5 0.18
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (16 bp):
CTTTTTTTTTTTATTT
Left flanking sequence: Indices 235546 -- 236045
GAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGA
AAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCTCAT
ACGGCTCCTCGTTCAATTCTTTCGAAAGAATTGGGTCCTTTTCCTCCTTCGATAATCTCCTCCCT
TCTTCCACTCCGTCCCCAAGAGTAACTAGGACCAATTCAGTCACGTTTTCATGTTCCAATTGAAC
ACTTTCCATTTTTGATTATTCTCAAAGGAGAAGATTATTCTTTTTACCAAACATCTGCGGATCCA
ATCACACGATCTTATAACTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCCTTGCCCCTC
ATTCTTCGAGAATCAGAAAGATCCTTTTCAAGTTTCAATTTGTTCATTTGGAATCTGGGTTCTTC
TACTTCATTTTTATTTACTTATTTCTTTATTATTTTTTTCCCTCG
Right flanking sequence: Indices 236093 -- 236592
CCCTTCCATCATTCCTTAAGTCCCATAGGGTTGATCCTATAGAATCTGATCCATTTTCTCGTTGA
GCGAAGGGTACGAAATAGATCGGATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTT
TTTCCTCTTTCTCTATCCTTATCCCATAGGTACAGCATTTGAATCAATAGAGAACTTTTTCTTCT
GTATCTATATGAATCGATATTATTCCATTCCAATTCCTTCCCGATACCTCCCAAGGAAAATCCCG
AATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATGGG
AATCCTTTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGACGACC
TATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGTGTAAAGCCCGCGGTAGCAACGGA
ACCGGGGAAAGTATACATAAGTATACAGAAAAGACAGTTCTTTTC
Found at i:236611 original size:18 final size:18
Alignment explanation
Indices: 236588--236625 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
236578 AAGACAGTTC
236588 TTTTCTATTATATTAGTA
1 TTTTCTATTATATTAGTA
*
236606 TTTTCTATTCTATTAGTA
1 TTTTCTATTATATTAGTA
236624 TT
1 TT
236626 AGATTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTTCTATTATATTAGTA
Left flanking sequence: Indices 236088 -- 236587
TTATTCCCTTCCATCATTCCTTAAGTCCCATAGGGTTGATCCTATAGAATCTGATCCATTTTCTC
GTTGAGCGAAGGGTACGAAATAGATCGGATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTC
GGTTTTTTCCTCTTTCTCTATCCTTATCCCATAGGTACAGCATTTGAATCAATAGAGAACTTTTT
CTTCTGTATCTATATGAATCGATATTATTCCATTCCAATTCCTTCCCGATACCTCCCAAGGAAAA
TCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGA
ATGGGAATCCTTTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGA
CGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGTGTAAAGCCCGCGGTAGCA
ACGGAACCGGGGAAAGTATACATAAGTATACAGAAAAGACAGTTC
Right flanking sequence: Indices 236626 -- 237125
AGATTAGTATTAGTTAGCGATCCCGGCTCAGCGAGTCCTTTCTTCCTGTTGGCACCAGTCCTACA
TTTTGTCTCTGTGGACCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTGTACCATGAGAGAAGC
AAGGAGGTCAACCTCTTTCAAATATACACCGTGTATTCTGGCAATGCAATGTAGTAGGACTTTCA
TCTTGATCCGAATGAATCATCTTTTCCACGGAGGCAAATCTTTGCCTGCTAGGCAAGAGGATAGC
AAGTTCAAAATTCTGTTTCGGTAGGACATGTATTTCTATTACTATGAAATTCATAAATGAAGTAG
TTAATCGTTTTGTCAATTTTTCGGGGGCTTAAAGGGGCGCGGAAAGACATAAGAACTCTTGAATG
GAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGGAG
GGGTTGATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTT
Found at i:260017 original size:10 final size:10
Alignment explanation
Indices: 259973--260015 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
259963 TTATATTATT
259973 ATATAGAATA
1 ATATAGAATA
259983 ATATAG-AT-
1 ATATAGAATA
259991 ATATAGAATA
1 ATATAGAATA
*
260001 ATATATAATA
1 ATATAGAATA
260011 ATATA
1 ATATA
260016 TATAGATAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 6 0.20
9 4 0.13
10 20 0.67
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (10 bp):
ATATAGAATA
Left flanking sequence: Indices 259473 -- 259972
AGGCTTGCGAAACTAAGTAGGGCCTTTTGAATTGAATCTTAAGTAGTCTATCAGTGGTGCGAAGC
GGCTTTGCCCCTTTTCAGTAGGGGAGCGAAAGGTTAGACTTAGACCTTAGAAAGTCAGCGAACAG
CGGTTCTTCTATGTAGGTATGGTGTTCCCCCTTGACTTGACTCTCCTAACGTCGAGCTAAGTGAC
TTCGTAACCTTTGCGTAGCGTAGTAGAATGAAGGCTACGCACTGACGCTCTCTTATCTATTAGCC
TAAGCGTCTTCGCTAACTCGCTCGCCTACTATACTATACCCGACTATACAATACATTAGTAGAAG
TAAGCGGCTGAGTTAGCAAAGCCTACCCTACTAATGTATTGTATAGTAGCGCCTTTTCCTTTTTG
AATAACCCATTCTCATTATCTTTCATAAGTCAAGTAGGCGAACCTATAGGTCCTTAATTGCGTTG
ACAAAGAAGAACAGCCGGTTAAAAGACAGCGAATCTTATATTATT
Right flanking sequence: Indices 260016 -- 260515
TATAGATAGGCCAGCTTGACAAGCTACCCTTCTTCTTGATCTGAGGTGCGAAGAGAAACATCTCT
TTTTTATGACTTCCACTTTTCAATCCCGGCCCGGAAAAGTGACCGACCAGGGCCTATTGATGAAT
GAAAGAAAGGGTTTATGAGCCCTAGCCCTGTAAGCCCACACCTGTGTAGAGTAGATCGTTCAACA
CCTGCGGCACAAACCCATTTTTGACCTATTGGTCCTAGTCTCATAGGCGATCGAACGGCCGCCCC
CTAATTACTAGACCGACCTGCTGTAATAATTCCATAAACACCTAGCGAAGATATGGCAAACAAAT
AAAGTAGTCCTATGTTCGGATCTGACAATACCATACCATAATCAAAAGGTACAACGGCCCGAGCG
ACCAGACTTAACATAAATGTAACCACTGGAGCCATTCTAAAAAGGGAGAAATTAGCACTACTCGG
TGAAATAGGTTCTTTTAGAATCAATTTCGAACCATCTGCTAGAGG
Found at i:272192 original size:18 final size:18
Alignment explanation
Indices: 272169--272205 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
272159 GGTTGAATAA
272169 TACTTAGATAGAAGAAGT
1 TACTTAGATAGAAGAAGT
272187 TACTTAGATAGAAGAAGT
1 TACTTAGATAGAAGAAGT
272205 T
1 T
272206 GTGATATAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.30
Consensus pattern (18 bp):
TACTTAGATAGAAGAAGT
Left flanking sequence: Indices 271669 -- 272168
ATTTCGAGGACGGGGCCTCTCCTTCCAGCCGCGTTTCTTTCATCCACTCTCCTTCCTTTGTTTGT
CAGTCGAGTGCCAGGTCCATGATCGGCGTGTTCAAGACGTGCTTATGAGGTTCGACTCCTCACCG
ATCATCCGTTCGTTGGACAGTTCGTTTGGTTGGAAAATACGTATATTTATAACAGCTCTACTAAC
TGGTGTTTATTTCCGGAGTGATTGATGCTGTCGCCTAAAAAGATAACACACCAGGACGAAACTTC
GGGAGTAGCGGCTCACTGTTGATCCTAGGGCCCAGCATAAAGATTTCCCAACCAACCGGATCGAA
CCAAAAAAAAAGATGAATAGGTTTTAACAACCCATCCTTGTCCGTGCGTGGAAGGAGGAGAGTTG
TAGCTGGATAAGGAAATTACTTTATTCTGTTATGTCCTTCTCATGATCGTAGACCACCATCCTAG
CTAGAGGGATGAAATTGAAGTTCCGAGGAAAGAGAGGTTGAATAA
Right flanking sequence: Indices 272206 -- 272705
GTGATATAGCGTATATATCTAGATGACTGGACTTGGCTGCGCCCTAAGCCAAGCTGTACTACGTA
GCCCCTATAACTCTAAAACCATTACCTATCCCGTCCAAAACAACATATACCTCAACAGCAGAAGA
AGTCACCCTTCATCTTCCCACATTGAAGACACGAAAGAGAAACCTCACCTAATGAAATGACCTCA
CGCCAGCGCTACCCTTAAAAAAAAGGTTTTACGGAGCTTTACCGCTCTTCCTGCGATTCTTCTTT
TTAATGAGAACAGCACGGAACTAGACTAAGGAAGTCATCTGCAGTGCCCCTTGCACTTCCTAATG
GGACTTTCCCTGGTTGACTATTCTTACTATGAGAACAATGAGCACCAGCTTCATTCACAAGAGAA
TGGGCTTCCTCCAGTCATAATCATCCCGTACGCTAAGAACACTGCTGATTCGAGGGGGCAAGAGG
TTCCACTCATCAAAGTGAGAGACGTAGGGCTTCTGCCTGGCCTAT
Found at i:286047 original size:15 final size:16
Alignment explanation
Indices: 286005--286047 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
285995 TCCTACCTTA
286005 ACAGTCGATCATGCGCTC
1 ACAGTCGATCATGCG--C
*
286023 ACACTCGATCATGCG-
1 ACAGTCGATCATGCGC
286038 ACAGTCGATC
1 ACAGTCGATC
286048 TGTCCATCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.21
Consensus pattern (16 bp):
ACAGTCGATCATGCGC
Left flanking sequence: Indices 285505 -- 286004
TAGGTCAATGGCATCTTTCTGCCTAATCAGTGCAATCCGGTTAATCCCTCAGAGCTGATTCAATT
GCATTTGTAAGAGCGGAGTTGTCAACTTCTCTTCCTCCAACAGTTTAGTCTGTGCATTCATGTGC
AGCAGATTCGTTCACAGACGATTCAATAGCAACCCCTCTTTGCAACCTATACCTCTAAAGTAGGG
TTCTTGCCTTTCCGAGCTAGTTGGAAGCTATGCATCGTGAACTGCAGCGTTCATTGAACCCTTTC
TTGCTTGTTTGGAACCCTTCTTTCTATTCTCTAATCTCGTATGGCTGCTTTCAGTCTCATCTTCA
GTTTCGGGACATTGTTCCTATGCCTCTTTCTTTGAAGTGAAGCCCTTATATCGAATGATTCAAGA
CCAAGACATTGGGATTTGATAATCGAAATGATACAATCTTGGGACAGCCGAATTGACAGAAAATA
GTCTGAACTTGTTGATCAACCCTCTTTGTTGAAGGTCCTACCTTA
Right flanking sequence: Indices 286048 -- 286547
TGTCCATCCGACTACATTCACTGGGGGGTGAGGTTGTCCAATTTCAATTATGTGCCGCTCGTTGA
CATCTAGTTTCCATTACCCACTTACTTATAGGTGTGAGAGATCTTCCTTCGGTTCTAGTCAAGTA
TGGCAGCTCTTTCCCCATCATTCTAATATCCACCTATCACCCACCAGGCGCCTATTTCACAACAA
ATCTTTGAATATCAAGACCATCGTCGATATCATCAATAAGAAAACCTTTAGGCTTGTTATCCAGG
AACTTGTTCGGAAATACCATAATGAAAGGAAGTCTGGAACAGCTCCGCCCCTCCCAAGCTAGCTT
TATAGGGAAGGCACATAAAGGATGAACAACCTTGTATTTTGATTGAATTTCGACTGAAACTGAAA
AGTAAACCCTGTTGAAGAGTTCGTTCGTCTGCAAGACTCAGAAAGTGGGTCGTACTAAACCTTAA
ATCCCAGATGGCACTTAATCCTGGATGGCCTTTCTTGTAGTTTAC
Found at i:329799 original size:18 final size:18
Alignment explanation
Indices: 329776--329825 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
329766 TACAAAGTCT
329776 TAGAGGATACCCAAGCGG
1 TAGAGGATACCCAAGCGG
*
329794 TAGAGGATACCCAAGGGG
1 TAGAGGATACCCAAGCGG
329812 TAGAGGATACCCAA
1 TAGAGGATACCCAA
329826 CCGACTCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.36, C:0.20, G:0.32, T:0.12
Consensus pattern (18 bp):
TAGAGGATACCCAAGCGG
Left flanking sequence: Indices 329276 -- 329775
TCCTAAGTGTTATCTATTAAAAACCAAATCAGGTAATATAATTAAGAATAAAGGTATAGCTAAAG
ATTTGGTCGATGCAGATTGGTTTGAATCTCAGTACCTTAATCCTTCTCAAACTATTACTAAGACC
ATAGATAGATATTTCATGATTGATTGGGAGAGATTACATATCTACTTTAAGAAATCCAAAGTAGT
ACTTACTAGCCATATTGAATACAAAAGGGAACCAATATACAATAATCAAGGTCGTGTGGTTGACA
CAAAAGCTAAGATTGCTAGAGATGATCCTAATAATGTCTTATTATATAAATGTAGATTGATATCT
CGTCAGCAAGAATATGAAAAGATACTTAAAGAAAAAGATAATATTATTGTGGAAAAAGATCATTC
TATTCTGAAACTGAAGAAAGAAATTCAAGAGTTGTCTTCACAAATGGATATAGTCCAAAATAATA
CTATGGATAATACGATAAAGAAGATTAAAGAATCCTACAAAGTCT
Right flanking sequence: Indices 329826 -- 330325
CCGACTCTATTCCCCACCAACCCTAAGAAAACACCCAAGAAAAAGAAAAGGGCTAAGAAGAAACC
CCCATCCAAGGCTAAGAAAAAGAAGAAAGGATGGTCGTAGATCACTGATGTCGAATTCATATGAA
AGATTATGGGTACCCTGAGGGTATATAGTATTTGTTACGGTTCACTGGATGGTGAGAACCAGAAT
GAGATTGATAGCAATCCGGCCGATACACCATATCTTCATTTTATTTTTTCACCAAAAAAGGTTTC
ATCACTTCTATGTCATTCTGAGCTTACAGAATTGGGCACCTACTACTTATGCGTCAACCATCACT
TATTCATCGTTGGGAACCGGGCGTCTTCGAGACGAAAACCAGATTCATCTTTGTGGATGTGCCTA
TTCGTTCATCACTAAAAAAAGACCTCCCTTGACTCGCCAATAGCGCCTCTTTGCACCAGCAGAGC
AGCGGTTCGATTCAGCCACGAAAGTGACAACATCAAGGACACTGA
Found at i:345189 original size:32 final size:32
Alignment explanation
Indices: 345153--345217 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
345143 TTCATATCTC
345153 ACGCCCGTTGGCCACTAAAGCGAAGTGATCAG
1 ACGCCCGTTGGCCACTAAAGCGAAGTGATCAG
*
345185 ACGCCCGTTGGCCACTAAAGCGTAGTGATCAG
1 ACGCCCGTTGGCCACTAAAGCGAAGTGATCAG
345217 A
1 A
345218 ATATTAATCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17
Consensus pattern (32 bp):
ACGCCCGTTGGCCACTAAAGCGAAGTGATCAG
Left flanking sequence: Indices 344653 -- 345152
TGTACTTCTAATTAGATCAGTTAAGCCATCCGTAAAGGTCAAGCCCTGTCACTCGACTTGGGAGA
ATCATTCTTTTTCTCAAATCTTCTTATTCTCCTGGCCAGTTCCTCTCCGCGAACTATTAGATCTA
TCTTAGCTTTTTTATGAGAATACTATAGAGTTACGAAGTAACGTAAGAGCGATTAAGCGTAAGAG
CGTAGTTTACGTAGCGTAAGACCTTTTTCTTTGAAAAAGCGATAGCTAGAGCGAGCGGAATACTT
GAAGCGAGTATATAAAGAACTAGAGTAGAAAAAGCGACTAGTTGGAGAGAGGGGAAGAGCTTCAC
TCAATCCCTGCCTTTGCATCTTTCTTCTCTGAGCCCGGTATCAAAATGCTTGACTATCTCCCCGA
ATGAGACAGATTTCCTCTCTCTGCTCTGGAATCAGGAAGGAGAATGTCACTATGGGAAAATAGAA
TGAGCATGCGTCGGCCTATGCTCAGGGTCACTCTTTTCATATCTC
Right flanking sequence: Indices 345218 -- 345717
ATATTAATCCAACAGCAAATATCATCTCATCTCACGCCCGTTGGCCTGATGTTCGAAAAGAGCGG
ATTTGTTCAAGCAAGCTAATCAAATTTCCCTTTCTAGGGGGTACGATGTCATTACTCTCTTTTGC
TCTCTCACCCCTTGAAGAAGAGCGAACAGCTGATCTTTCCTGGTCCTTTCGAACCAGTCTTTCTA
AACCTGGAAAAAGACTTTGGCTACGATTCGATCTCGAAAGCCCAGACTTCATAAAAGGCGACTGC
CTCTTCCACTGCTACATGAACCATCCGCTTCTTTTCCGATGCTGCTTCAAATAAGTGAATAGATC
TTTGTGATTCAATCGATTCGATTCTCGTTCTCACCCTCGAGTCAGGAGATACCTTGAGAACAGTG
AACAGTGAAAGCAGAATCCTATTTAATTTAGAAGAAGGCTTTGTCTCGTCCCTTCCCATAGTAGG
CTAAACCGGAAAGAGAGATCGGGATGATGGAGACTTGAAGAAGTA
Found at i:418422 original size:24 final size:24
Alignment explanation
Indices: 418386--418435 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
418376 ACACCGAAGA
418386 TGGGGAGACCTCGGGTTCATCTTC
1 TGGGGAGACCTCGGGTTCATCTTC
*
418410 TGGGGAGATCTCGGGTTCATCTTC
1 TGGGGAGACCTCGGGTTCATCTTC
418434 TG
1 TG
418436 CACATAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.22, G:0.34, T:0.32
Consensus pattern (24 bp):
TGGGGAGACCTCGGGTTCATCTTC
Left flanking sequence: Indices 417886 -- 418385
GCAAAGCAGAAATTCTCGTAGATAAAATCATTGTTTTTTTGTTATTCGTGGAGGGGTTCACGGAA
GAATAAGAATAGAATTGGGTTCGATTCCCATTGCCCCTTTGTGGTGAAAAAGACTGATTCAACGA
GATATGCCATGTCTGCATTAAGATTTAAAACTTGTCGTCTACTTTCAGGAAATGTTCGGAAGAGA
GAACTTACAATAATACAACGCCGCATTCTCCGAAGATTGAGGAAGAAAATGAGATCTATTAAGAG
AAAGATTTATCCGAGAGAAAATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCC
TTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAACAAACTACACGAAAGATG
AAAGTTTTCTTCTTAGAAATACTGGGAAACTTTATAATTCCAGTAGTTATATTATATCTCTTTCT
ATATCTATTCGGTATACCACTCATTGCATTTTGCGACACCGAAGA
Right flanking sequence: Indices 418436 -- 418935
CACATAAGAGGAAGAGGGGATTTGATCTCAACAGTACTCCGGCCATAACGGAGGAAAAGGAGATT
CGGGGGGCTATAGATCTGAACAAGACCCCTCTCCAACTCGACGTCGAAGCTCAATTGCTTCAGAG
ACACCAACTAGAAATGGATGAAACACGGGCGTCCATCCGAGCATGGGTCGATTGTAAAATAAGGA
AAGAGATGGAAGCCCAAGGGGGTACTCCGCTTGTCGGTCCGATAGCTCACTTGGACGAAGAAGTC
TCTACGGTAATAGCATATGGTCCCCAACCGAAAAATCCATCCAACCTTAGCAATGTGCGCCGATG
TCTTTCCATGCTTAATAACGCATTATGGTCGGAAAAAGACTCGCCGCTCAAAATAAAGGTGGAAA
AGGCCATCGTCGATGCTGTTCGCCTTTTCTTAGTAGACGAAAGGGAAAGGAAAAGGCAAAGATAA
GACCGGGGACCAGAGCACAGAGCAAGTTGGGTTGGGGTTGGGGTA
Found at i:431236 original size:18 final size:18
Alignment explanation
Indices: 431213--431248 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
431203 AGGGTCGGGC
431213 CTCAACCAATCTACTTAT
1 CTCAACCAATCTACTTAT
*
431231 CTCAACCGATCTACTTAT
1 CTCAACCAATCTACTTAT
431249 AAGTAATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.03, T:0.33
Consensus pattern (18 bp):
CTCAACCAATCTACTTAT
Left flanking sequence: Indices 430713 -- 431212
GGTGGGTTACGGCATAGGCATTCTTCAAATCCGTGTGGAAGCATACGAAGAAGGATTCGGACCAA
GAGCTCCAGCCCGATCCCTGTGATCTCGTACTTGGTGTTCCCCTCTTTTCTGTTCGTCCTGGTAT
GGTATGTACCCTTTCACTCCAGGGAAGGTTCCCGAGCTGGCCGCACCAAATCCTGGAAGTGGCAC
CGCTCTGGCGATTGGCAAGACATATCCGAGGAGCGCTGCCTGAACGAAGCGTGGGCGTCAAGCAT
CAAGTGGAGGCGCCGAATCGTTGCAAGAGGGGGCGGGATCGACCGGTCAGAAGTCAAGCTGGCCA
AAAGGCATAGGGCCAAGGCTGAGCTGGCAGGCTCATCTCACTGATTGTGTGCTTTTATTGGATAA
CATCCATCAAGGGAAAAGCTCTATTCCGTTTCCACAACGTGTTGGTTTCCCGCTCAGCCCCCTAA
ACACTATGGCATCAAGGTCGGCAACCCCAAAGGAAAGGGTCGGGC
Right flanking sequence: Indices 431249 -- 431748
AAGTAATAAGTAAGGGGAAAGCCACGAATATCGGGGAAACTCTTATATATATATAATAGGTGTAT
CCTAGAAACACGGGCTAGAGTAAGCGCCAAGCGCTGGCCCATTAGTGGTGAAATTCCTGCTTGCC
TTTCATATCATAGTGAAAGATTGAGTGAAAGCCCACGCATGACCAATATCAATGGCTTGGGATCT
TTTCTTGGAAGAAAGACGAAGCGGAGATCTTTCTCTTTCTATTCATGAAAGAATGATAAATAGAA
GAATTCGAGTGACTCACAAGGGGAAAATCCAGATTGTTCCAAACGGGTTCTCAAGCAAGACAAGC
CCCAGGTAGTGGACTTAACTAACATCACTGCCAGACTCAATCCATAGAATCCGTTTCGTCTCAAG
CCTAACGGCTTCCTTCATTGCCCTTACCCGCCCGTTAACTAAAAAAAATCTTTAGTTCGAAGTTC
AATACTACTAATTAGTATTATTAGCTAGGAAGCAAATCCTGTAGT
Found at i:489898 original size:18 final size:19
Alignment explanation
Indices: 489875--489912 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
489865 AAACACAAAC
*
489875 AAGCAAGCCAGGCAA-AGA
1 AAGCAAGCCAAGCAATAGA
489893 AAGCAAGCCAAGCAATAGA
1 AAGCAAGCCAAGCAATAGA
489912 A
1 A
489913 TAAGAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.53, C:0.21, G:0.24, T:0.03
Consensus pattern (19 bp):
AAGCAAGCCAAGCAATAGA
Left flanking sequence: Indices 489375 -- 489874
CATAATTTCTTTCTAGATTTATCGATGCGTATAGTTCTAGTAAGCTGATCTACGACCATCCCCCA
CAGCCTTTGTTTCGGGTTCGATTTCTTATGCAGTTAGGAGTGGGGCGTGCTAGCGGGAAGTCCGG
TTATGAACATATATCAATCCCTCAATCAACCTGAGTATATATTTTATAGGACACGGGGCGATATG
ATATTATAGTGCATATATTCGCTCCTTGTTAAGACCCGACTAACTAAATTGAATCGAATCTCCTC
TTCTAGGCAACCGGGTCTGAGTCCCTGTCCCTAGTCTGAGTGTTAGTAGTTTCATTAGAGCAAGC
TCCTCAGTGTTAGGGTTTTGACTTGCTTGCTTACCGGCGGGAAAGGACAGAGTTTCATAGTCCCA
TTCCCCACCCAGTGATAAGATAGAGACAACCCTGCCAACCAGTAGTCCCCAGCCAGCCAGTTCAA
AAGCATAGGAATAGGTAGAGTAGATTAGATCTATTAAACACAAAC
Right flanking sequence: Indices 489913 -- 490412
TAAGAGAAGTGAAGGAGCGAAATGATAATAGATAGAGTGATTGGCAGATAGAGTTCTAGGCCAGT
TCAAGGGAAGCTTCACTCCACCCTCCTTTACGTAGCGAGCGGGGCAGGGATATTACATATCGCCA
GGAAAGCCAATTTATTGGCTTGAAAGAGCTTTGATCACGACTGGTTGTAAACAAACCACTGTCTC
GCCTCTGCTTTCTTTCGAGCTCCGCTCTCCCCGCCCCATTCATGGCTTGCTGTTCGGATAGTCAG
AAATAAATTCCGGGAGGCAACGAGTAAGGAATTGATATGGCCCACTTTCTGTCGTTCTAGCTGAT
GCAGTCGGTTGATTCAGCTTCTTTTTATGCGTTAATATATTATATTCTATAAGTGCTCGCTGGGT
TCCTTTTTGAAAAAAAAAACACACGGGGCTCAGACAGGTACCGAAACCTATTGTCATCCTTACAT
ACAATAGAATGAAAAATGCATTTGTTTGAGATCTATATGAGAAAG
Found at i:493352 original size:8 final size:8
Alignment explanation
Indices: 493341--493374 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
493331 TTTATTATTC
*
493341 TAATTAAT
1 TAATTAAG
493349 TAATTAAG
1 TAATTAAG
493357 TAATTAAG
1 TAATTAAG
*
493365 TAGTTAAG
1 TAATTAAG
493373 TA
1 TA
493375 GTAGTGAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (8 bp):
TAATTAAG
Left flanking sequence: Indices 492841 -- 493340
CGGGAATGAGTACCTATCCCTTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCC
TAACCACTGGACGAAAGGGACCAAAAAGCCATTCTTCATATACCTCAGCTCCGAGAATATAAGTG
GTTCGTTCTATACGCAATTCAAGATTTCGTTTGTGTTCATGTTGGCGATTTCTGATTTCTGATGT
GAATTCGGCGGGTCGTCCACCCCTTCCTACGGGTTCCCCCACCGATCCAGTAACACACCAACCCT
CCCTTTCTACGATCATAAAGCCCCCTGATTCCTTTCTTTGTCTTTCATCCCCCCTGAACAGAATA
AGTAAGGCTTTCTAATTCAAAAAAAAAAGAAAATAGGGGCGAAGCGCCCGTTTGAAGTGGCGAAG
GCCTATGCTAAAGTAAGAAAGAAAGTACGTTAAGGTTACGAAGTAAGGTCAGCTGGTTAAGGAAA
GCTCAGGTTATGAAATCGCTTAGCCGTTTTTTTATTTTATTATTC
Right flanking sequence: Indices 493375 -- 493874
GTAGTGAGGCGTCGGTACGGAGTTGCGTCAGCTGTACATATAGACTAGGCTAAGGCGGACTTCAT
CTCTTCTATTCTCTTCACTTACACTTCCGCTGAGTCTAACAAGGCTCAGGTGCGGAGCTTTCCAC
TGTGGACCGAGACTACGCAAAGGTAGAACACCATAGAAACTTCACTGACTTTATCATAAACCTTG
ATTTCGCTACGCTCAATAAGAACCCGGAATAGCGGAAATAGGTTCGTGTTCCGCTTCCAAAGTCA
GTCGTCTTTGCCCAAGTGTGAACTGCAGACGACTCTCCGGTGGTTCCATTCCTTCTTACTTGACT
TCTGGGTCAACCCAAGCCGAATGGGAAGAAAGGGGTCAGCCAAACAGCAGTCCACTTTGTACATT
TTCTGAGGCAGACCAATCAGGCATTTTAGAAAGGGGAAGGGCACTTCTCACCGAAGGAGGCAGTA
GGAATGAAGGAGGCGGGAAGCTACCGCTTCTAGAACTAGAATGCA
Found at i:505033 original size:14 final size:14
Alignment explanation
Indices: 505014--505044 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
505004 TTTAATCCGG
505014 TATAAATATAATAA
1 TATAAATATAATAA
*
505028 TATAAATATCATAA
1 TATAAATATAATAA
505042 TAT
1 TAT
505045 GACGGTCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
TATAAATATAATAA
Left flanking sequence: Indices 504514 -- 505013
TCTTTTTGTTTTGACAGGAGTCGAAAAAAAAAGAAGAAATATTTTAATACGATTAGATTTCATCC
AAATGTAGTAGAGAATGAAAGGAACTATTCCTATTCCGATTTGATCGAAGTTGAAGAATCAAAGA
ATTTATCCTGCGGATTAGGAGAATTCTATAAGTTTTTCTTATTCTTAAATTATGACCCAAAGAAG
AAAAAGAATCGAATAATCGTTCTATGATGAAAATAGAATAACCCTCTTGTGTTTTGTGCATAGCG
GGTATACGCTTATACACTAGAAAATAAAATCTAAAAATCCCTGGGATGATTTATGAATTTGTAAT
AGATTTACGGGTTAAGGGGTTGTTGTTGAGCGATCTAAAACTGGAAAGGAATTTTAGAATTCGTA
TAGAAATGGAATTTTTTTTTAATAATTATGATCTAAAGGTATCCATTAACCATAGTCTAAAAAAA
ATAGACCGATCAGTTGATTCGTTCCAATTCATTGATTTAATCCGG
Right flanking sequence: Indices 505045 -- 505544
GACGGTCTTGACAAACATGAATAGAAATAGTTCTTAAAAAAAAATAATAATTGTTTTTTTTCCTC
GCTTTGAAAAAAAGTTTATAATGGGTTGGTCGTACCTTTACTGCAAGAATATGAATGACTCGCTA
TTCACTCGCGGGTTCTGGGTCATAATCATAAGATTATGCAGGAGAGATGGCCGAGTGGTTCAAGG
CGTAGCATTGGAACTGCTATGTAGGCTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTAC
CTTCACCTAATTCACCAACGTTACCGACCGCAATGTATCAAATTCCAATCGATACCATTATTCCA
ACAAAGCCCTTTTTTTTCCCTACCAAATTCTATCTATCCCTGCCTGCTTCTTCCCCTTCCTTCTT
TACTGGTAGAACTGTTAGACTCGCATCGGCTTATTCAGTTTGTTATCCGTTTCACCGAGAGTGAG
GCTTTCCCACGGTAATGGAAAGGTCAGCGGAATGCGTAAAGGAAT
Found at i:529057 original size:25 final size:24
Alignment explanation
Indices: 529029--529076 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
529019 AAAGAGGGGG
529029 TAGCTTCCTGGTGGATAGCTTGTAA
1 TAGCTTCCTGGTGGATAG-TTGTAA
* *
529054 TAGCTTCTTTGTGGATAGTTGTA
1 TAGCTTCCTGGTGGATAGTTGTA
529077 GTATAAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.42
Consensus pattern (24 bp):
TAGCTTCCTGGTGGATAGTTGTAA
Left flanking sequence: Indices 528529 -- 529028
AAGAGAAAGAAGACAATTTTCAATGTTCTGATAAGATGGAATTTGCCTTATTGCCTGGATATGAT
CCTCCTTGTGATAAGGATCCTCTTGTATCTTTTGTAGATAGGGACTTTAGTGTTCCCCCTGTATT
GCATGCTCATTCCGACAGGTCTCACTCATCCGATGAAAGTGAAGCTCAAGAAGAGCCTCCCCCTC
CACAGACTTCATCCTCGGCACCGGATTCAGGTTCAGTCATGCTTCGCCCTTCTTCACGTAAGTCT
ATTCTTCCCGTTGATTATGAGACATTCACTCCTCGACACCGTGCTTTTCTTGCTTCACTTGTCTC
CTATGATGAACCTAGGACCTATAAGGAAGCGAAAGCTCACTCGACCAAGAGGGAGCCTGCCCTAT
CACTACAAGCCGGAATTCAAACTAAGTTGTTGTTAACTAAACTAGCTTCTTAATATGACACTGAC
ACCCCATTGTCAGTGGTTACAAGGCTTTTAGTTAAAAAGAGGGGG
Right flanking sequence: Indices 529077 -- 529576
GTATAAGAATTAATGATGTCATCTACTAGAGACCATCATCTGGTCTTCCTCTGTGAGACTTTCAC
ATAGTGTTACTCTGCGCATAAAGCATGGTCTCGTCTTGCTGTGGCTAGCATGTTTGGTGTATATT
GCTAGTTAGCCATCCCTCGCATCCCAGCGCAATGAGAATCGATATTTTGAATCAACTCCACAAGG
AGAATCTATAATAGCATGTTTGCGCACGGCCTGGAATAGACGTCAGATCTCTCACTGAACAAAGC
TCTTCCAACTCCACCTGTACCACAACACCTGGACAATCAGAGGGCCTTCTATTGATCTATCTTGT
ATATGTATACCCATTAGCTTTTAATTGGTATACATATATTCCTCCTTCTCTCCCTCTCCGGATTG
ATCAGAAGATCCTTTCTATCTACTCCGACTGAGAGATGGCCCCTTTGCGGTCGTGAAAGCCAATG
CTGAACCCTTGCCGGCTTAATAGATCCAGGATGTGCCTTCTACTC
Done.