Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_014043.1/NC_014043/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           379236
Total number of identified SSRs:                 48
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	39
2	6
3	1
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A	-	-	-	-	-	9	6	2	1	1	19
C	-	-	-	-	-	4					4
G	-	-	-	-	-	1					1
T	-	-	-	-	-	9	4	1	1		15
AG	-	1	1								2
AT	-	1	1	1							3
CT	-	1									1
AGA	1										1
AATGAG		1									1
TCATTC		1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A/T	-	-	-	-	-	18	10	3	2	1	34
C/G	-	-	-	-	-	5					5
AG/CT	-	2	1								3
AT/AT	-	1	1	1							3
AAG/CTT	1										1
AATGAG/ATTCTC		2									2