Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_050308
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 105766
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Found at i:1367 original size:19 final size:19
Alignment explanation
Indices: 1343--1380 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1333 AATTCCCCAG
1343 AGTATAATATTCAGTATAA
1 AGTATAATATTCAGTATAA
1362 AGTATAATATTCAGTATAA
1 AGTATAATATTCAGTATAA
1381 CCGTCAGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (19 bp):
AGTATAATATTCAGTATAA
Left flanking sequence: Indices 843 -- 1342
CGCCCTCTATATTATACAATCAAGCGCTGCGCCCTGCATCCTGCAATTAAGGGCTTTAGCAGATA
GCAACTGTGAACAACAGCATAGATATAGATATTTTCATAAAATAAATACTTATTTATTTTTTTTT
TAACTTATTTATTTTTTATAATATTTTAGTATAGGCCGATCGGCGCCGCAGGCGTATTGATTGTT
GTTTCATGGCCAGCTAATTGATGGGCGAAGCTCTCTGCGCCAGAGGCCGCAGGCCGATTTTAATC
GGCCTAGAGCCCCGATTAAAATCGGCCGCGCCGGGCCGATTACATGTGCCGCGTGGCAGCGCTTT
TCGGACAGTATTGCTGGAGCTGCCAACGTGTGCCAGCGGATTCCCGTTATTTTCTTTGACCTGCG
GCCTAAGTAATATACGTCACCGTCGACATTAATTCATGAGATATGCGTCTCTTTTATTAATTATC
GCCAATTATGCCAACCTATTAATGTAATTTAATGTAATTCCCCAG
Right flanking sequence: Indices 1381 -- 1880
CCGTCAGCTTTATCTTTCTAATAGCAAATGGTAGAGCAAGTAGTCAGAAGTAGATAGGGCTTTAG
CACTGTAATATGTAAGTAAAGCAGAAGAACAAACAAACAGAAATGTAGGTAGAATGTAGGTTTAC
GGCTAGAATGTAGATTGTGTAGGTTTATTTTACTTACTTTCCATTACTTACCCACCTTTTATCCT
TTCCTTTCCTTTCTTTTGTGTATTTCATTCCTTCCTAAGCCTCTCTCTCTCTCCTTTCTTCGGTC
CCGCGGAGCTGGGATTTATTTATTTAGGAAATTAATAAATCAAGAAAGGCTTTCCTATGTTCTGA
GGCTCGAACTACGGGAAAAGACGAAGTCCTAGAGATCGTATAATGCATAGAGAAGCTGAAATAAG
TTCATAAAACCTACACTATCTACACAATTTACATTCTACTTACATTTCTGGCAGAAATGAGTCAA
ATAAACCTACATAACCTACACTACCTACATTTTCTAAAAGAATGG
Found at i:7197 original size:12 final size:12
Alignment explanation
Indices: 7180--7204 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7170 ATCCCAAAAG
7180 ATCCCTACTATT
1 ATCCCTACTATT
7192 ATCCCTACTATT
1 ATCCCTACTATT
7204 A
1 A
7205 CCGGGGTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (12 bp):
ATCCCTACTATT
Left flanking sequence: Indices 6680 -- 7179
GCTAAAAGAGAGAGGATCCTTTGTTGGTTCTTTACTAATTGATGGATAGCCGCAAATTTCTTTCC
CAACATTGGCCACCGACCCTCGTTCATGATGACCGCGGCTTTCCTGGCGATAATTCGTGATTCTT
TTCGGGTCTCCTTCCATTCAGCGAAGAGACTGTCTGGAGATCCTGAGCCATTAGAGAAGCCGCGT
CTCTCTTTCCACGTCAAACGTTTCAGCATTACCCACATGTTATTGTGTATAGCCTTACGTCTCAT
CTCACCCTGTGATAGCATCATTGACTTGGATATATCAACAATGTCCAGTTGAATGGAAATGCCAA
TTTCGGCTCTAGAAAAAAGTTCCACTACAGGGGCAACGCTACCAATAGAATATCTGTCTTTTCGA
AAGATGTTGGGTCTCGAGTGGTCCGCCCGGGCAAGGGCCGAAGGCTTCTTGCACGCAACGTGTGA
AATCTTACCCTTAAAAGAAGGGAGGGCACACTCCAATCCCAAAAG
Right flanking sequence: Indices 7205 -- 7704
CCGGGGTCCAACCTAAAAGAGTTTGGAACTGAAACAAAAGAAAAAGGGGCTTCTTTTCTTTCTAT
GGTACCATCATCCTCTACCTTTCTCATGACATCGACTCCCAAACATCCCACCTCATTGCCAGTTA
TCTGCATTCCAGGCAGAGAATTTATTTGAGGCACAGAACAGCTGTGCTCGCTTAGGTAGCGCTGT
AAGGGCAGCGTACCACCTTTTCTATTGGCGCAATCGCGCCCATGACCAAAAAACCGAAACAGATG
CTGGTATAAAATTGGGTCTCCTCCTCCTGCAGGATCAAAAAAGGTTGTATTAAAGTTCCTATCAG
TTAATAACATGGTAATTGCCAATCTATTCACACACTTTTGGTCAGTGGAGCACAATAAAAATCGA
TTTTCTTTCATGCCGTTGTGGTGCAGTTTGGACTATATCTTCATCTCTTCTTAATTATACCCGCT
TTGATGCGCACAATATCCTTTTTTTTGCCCGCATTGACCGCGAGG
Found at i:30154 original size:12 final size:12
Alignment explanation
Indices: 30137--30161 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30127 TCTCATGCTA
30137 AATGAAATATAT
1 AATGAAATATAT
30149 AATGAAATATAT
1 AATGAAATATAT
30161 A
1 A
30162 TATATATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
AATGAAATATAT
Left flanking sequence: Indices 29637 -- 30136
ACCGAATGTATCATCATATATAATGTATTAACATCTTGATGTTAATAGGGCGCAACAAAAAATAG
ATATATTTGCCGTTTTCTTTTTTGAGTTTTGGAGAGTAAAACCTGCCAGACTAGGCAGGTGCATA
GACCCCTTCGCCTTTTACTTAATCAACAAGTTTCCCGTTTACACGGTTCTTTTGGGATTAGGCAG
GTACTATGGGTCCTCTGACTTCCAACTCGGACCATAGTGTACGGTTGGATCTCGCCGATATCACC
TGTGAGCTATAGCGCTTGAGATGTCGTTTAGTTCTCTGTCCCCATTACTTTGGGTAATCTGCTTC
CATGCGTAAAAATATATCTATTTTTTTTCGTCATTACCGTTCTTAGCCGCCAGCAGGCTGAAAGC
ATAACAGTGTTCGTTCGTGCGATTCCCCGCGTGCATTTTCTCCGCACTGGTTCGCTGTAGGGCAG
GCTGACCCGAAAAGAACTGCGATTCTGCTTTATCATCTCATGCTA
Right flanking sequence: Indices 30162 -- 30661
TATATATATTTCATTATATATTTCATTTAGCAAGCGCCAGCGGACTCGCGGAGGATTATTGATCA
GGCCGATAAACTAGCCGACAGCCGACGAATATCTCCTTTTTTATTGCTGCTTCTGTGGCGTGCTT
CCTTTGCTATCGGGTAAGCCCCGAGCCCCTCGAGCAGTAGTGCCTTTGTTGTAATCACAAGTGAT
CTAACGGCCGCCCCTAAGAAAGCCCCAGAAATTCTATGGAAGATAGAAAAAGTAGAAGTAAGTTG
TGGCTTATAAATGGTAAGATGAGGTGATAATGGTCGATTAATTTTCATGTTTTTAGTTGACTTTG
ATTTTGACTCAAGGTGACAGGATTTGAACCTATGACCCTCTGTACCCAAAACAGATGCGCTACCA
GACTGCGCTACACCTTGGCTGATGTTCCCTAATGAATATTTGATAGATGCTTAGACTGTTATTAA
GCAACATGCAGAAGAAACTAAGACTAATAAAAGAAACTCTATTTT
Found at i:30179 original size:12 final size:12
Alignment explanation
Indices: 30164--30188 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30154 AATATATATA
30164 TATATATTTCAT
1 TATATATTTCAT
30176 TATATATTTCAT
1 TATATATTTCAT
30188 T
1 T
30189 TAGCAAGCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATTTCAT
Left flanking sequence: Indices 29664 -- 30163
TTAACATCTTGATGTTAATAGGGCGCAACAAAAAATAGATATATTTGCCGTTTTCTTTTTTGAGT
TTTGGAGAGTAAAACCTGCCAGACTAGGCAGGTGCATAGACCCCTTCGCCTTTTACTTAATCAAC
AAGTTTCCCGTTTACACGGTTCTTTTGGGATTAGGCAGGTACTATGGGTCCTCTGACTTCCAACT
CGGACCATAGTGTACGGTTGGATCTCGCCGATATCACCTGTGAGCTATAGCGCTTGAGATGTCGT
TTAGTTCTCTGTCCCCATTACTTTGGGTAATCTGCTTCCATGCGTAAAAATATATCTATTTTTTT
TCGTCATTACCGTTCTTAGCCGCCAGCAGGCTGAAAGCATAACAGTGTTCGTTCGTGCGATTCCC
CGCGTGCATTTTCTCCGCACTGGTTCGCTGTAGGGCAGGCTGACCCGAAAAGAACTGCGATTCTG
CTTTATCATCTCATGCTAAATGAAATATATAATGAAATATATATA
Right flanking sequence: Indices 30189 -- 30688
TAGCAAGCGCCAGCGGACTCGCGGAGGATTATTGATCAGGCCGATAAACTAGCCGACAGCCGACG
AATATCTCCTTTTTTATTGCTGCTTCTGTGGCGTGCTTCCTTTGCTATCGGGTAAGCCCCGAGCC
CCTCGAGCAGTAGTGCCTTTGTTGTAATCACAAGTGATCTAACGGCCGCCCCTAAGAAAGCCCCA
GAAATTCTATGGAAGATAGAAAAAGTAGAAGTAAGTTGTGGCTTATAAATGGTAAGATGAGGTGA
TAATGGTCGATTAATTTTCATGTTTTTAGTTGACTTTGATTTTGACTCAAGGTGACAGGATTTGA
ACCTATGACCCTCTGTACCCAAAACAGATGCGCTACCAGACTGCGCTACACCTTGGCTGATGTTC
CCTAATGAATATTTGATAGATGCTTAGACTGTTATTAAGCAACATGCAGAAGAAACTAAGACTAA
TAAAAGAAACTCTATTTTTAACGCCACTGAAAAAAAGCACTACCA
Found at i:34069 original size:15 final size:15
Alignment explanation
Indices: 34049--34078 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
34039 TAATTAGATT
34049 TATTTAGAAATCTGA
1 TATTTAGAAATCTGA
34064 TATTTAGAAATCTGA
1 TATTTAGAAATCTGA
34079 AGGAAATCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
TATTTAGAAATCTGA
Left flanking sequence: Indices 33549 -- 34048
TGCGCTGGTTACTAACCTTATCCTAAATTTCCTTTTTCTATGATAGGCCACGGTAAAAAAAGATT
TACGATGTTTCTTAGGATAACTAGAAATGCAACATAATAAATGTTGTTTTGACAAATAGATCTTG
TTCACGAACTAAGTGGCTATACTCTTATGTTATATCAACAAAGTAGAATTAGCCGTTATGGTAGT
AGCTTCTGAATCATCATAGATAATTCATTGTTGTAGCAGAGCAAATGGGAGCGCGCGCGAATGTA
CATTGCTCCGGCTTGTTGCAAGATAAATTTAAGTAGGTCTACATGGCTTGCTTTCGATCGCCCTA
TTTATACGTAAAGGATAAATCAGGATAGAGGTGGTGGGAACGGGGCAGTAAACGACATTATAACA
TAGGCTAGGGCTCCGTGATTGGACAAGCCATGTAGAAAACAAACACGGTTAAAAGCATCTCGAGA
AGCGGTCGTATCTTATGTAGGTTATAATTAATAATTAATTAGATT
Right flanking sequence: Indices 34079 -- 34578
AGGAAATCTGCATGTTATATATATGCCGTGACTTGAAAATACGCAGAGACTAGAATTCCATATAA
CAGCGGCATCACCGGCGGCAATTCGATGTAGCCGACGCGTGGCCTGCGGCCTTGCGGGGCCGCAG
CGTTTCTCAGCGGCCGAAGGTTCTTTTCCGTCGGTTTTTACAAGAGATCAAAATAAAGTCAAGTT
AGAGAGCCCTGTGATCGGCGATTCTCGCCGGAGAGCACTTGTGTAGTCTACCTCGTTAAACGCAG
GAAACCTACGACTGAGCAAGTTAACTTTTTACTCTATTCATTAATCGCTACGCGCTTCCGGGCAC
TACGGTAAGACGTGAAAACACCCGATCCCATTCCGACCTCGAAATGTGAAATCGTCTTACGCTAT
ATGTACTGATTTATAAATTTCGGGAGACATGGTCCAGGCCCGGACAACGTCCAATTTCAATTATT
CTGAAACGCTATTAAAAGTGATGATTCATCCGTAGGCGCCAAATG
Found at i:41678 original size:81 final size:81
Alignment explanation
Indices: 41543--41692 Score: 257
Period size: 81 Copynumber: 1.9 Consensus size: 81
41533 AAAATACTCG
*
41543 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCATTTTCAC
1 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
41608 CAAGCGAGTATGCTCA
66 CAAGCGAGTATGCTCA
* *
41624 CTATCGGACTT-GAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCA
1 CTATCGGA-TTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCA
41688 CCAAG
65 CCAAG
41693 TGAGCTTAGG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (81 bp):
CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
CAAGCGAGTATGCTCA
Left flanking sequence: Indices 41043 -- 41542
ATACGGACAACTTCAATTTACTTTAGTCAATCATATGGATATAAAAAAAGCGGCTAATTTAGAAA
TAACATCAGTATTTCAACAACTTTTTGAGCTCATTTTTTACCCATATAATTCTTTATGTTCTTGT
CTGAACAAGCCAATTTATGCTTCACCCGCTATACAAGAAAAGACGCAAGGAGAATTACTTAGTCA
CCAGAGGATAACCACTTAGTAATTTGGGCCCCCACTTTGCCAATTAAGGCCGCAGGCTTTATTGA
CAGAACTGGGGCGCGTAGTTTGTAGCGAAGCTTTTTTTTTAATATTTTGGGAAACCCCCCAAAAA
TCTTTTTTGCTGCGAAAAGCAGCGCCCTCAAAGATTGTAAAGATTTAAAGTAATGGATGATTTGT
TTTTTTGGCGAATAACGGGATTCGAACCCGTGTTTTCAAATTCACAATCTGACACTTTCACCTAT
TAAGTTATACTCGCCCTTTTTCTAATTTAGACAGTAAAATACTCG
Right flanking sequence: Indices 41693 -- 42192
TGAGCTTAGGGAAGCGAAGCGCAGAGTGGAAACACAATCTTTTTGTTTCGTTTTATTTTCGCCAT
TTTATTTTATAGACATCCCCGGCTTATTCCGGCTCGGCTGGACCTGCGGCATTTTTTCAAATATT
TGAAAAATCTATAGTCCTTTGTCTCAAGGTGTGTAGAGACTCCTTTTTTATTGATACTAGTCTAT
CTTAGATCTGAGATAGTGCCGAAAAAATACTTGAATTGAATCTAACCACGGTTGCCTTGGCAATG
GCAATTACTCTTATACGATATGCAGAATACTCCAAAACCTCTATTTATTCTATTTAGAACTAAAA
GAAGATAATGCTTTTTTAGAAAAAAATCATAAAGTGCAAAGGTTAAAATTTTGAGCTTTGTTTTA
CGTAGTTTTGCCATCTATATAATATAATATAGTAAGAAATAATAAGTTGGCGAGGAAGTAAAAAA
AAATATATATATATCTTTTTTTTTTTTTCAATTCTGTGGTCCTGC
Found at i:74552 original size:2 final size:2
Alignment explanation
Indices: 74545--74570 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
74535 AACGAATAAA
74545 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
74571 TTTTTTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 74045 -- 74544
AAGGGTGTGAATATCTATTATTCTCGGGCCCCAAGGGGCCACAAAGCAGCACCCTTACTCTCCTA
GTCTATGTACATTGCTCTTTCTAGGAGGTTGGCTACCCATCCTAGATATTCCTATTTTCTACGTG
ATTCCGGGTTCCATTTGGTTTAGTATCAAGGTTCTTTTCTTTCCGTTTGTATATATATGGGTCCG
TGCAGCATTTCCACGATATCGTTATGACCAATTAATGAGGCTTGGTTGGAAAGTATTCTTACCTT
TATCATTAGCTTGGGTAGTTTTTGTATCTGGTGTTCTAGTAGCCTTTGACTGGCTCCCTCAATTC
ATTGAACAATTTCACTGCAGTGCAATTAAAAAATATATATTTTTAATTAAAAAAAACTCCGTTAA
AGAGCAGCTCGAAAACCAAATGAATTGATTAGAAGAAATATAAAATAATATATTTTATTCGTTCT
ATTAACTCCGTAAATGCAGGCTTTGAGCGTTCTAAAACGAATAAA
Right flanking sequence: Indices 74571 -- 75070
TTTTTTTATCTAAGGCCTTGTAATGATGGGTAAATCCTGCCCATGATGGATTGCGTTAATCATGA
AGAACACAAAGTTTCCATGATCCGCGAAAACAAGAAAGCATGAAACATTAATATGGCAAGACGAC
TATCGATTCTTAAACAACCTATATTTTCTACATTTAATAATCATTTGATAGATTATCCAACCCCG
AGCAATATAAGTTATTGGTGGAGTTTTGGTTCGTTGGCTGGTCTTTGCTTGTTCATTCAGATAAT
TACAGGCGTTTTTTTAGCTATGCATTATACGCCTCATGTGGATTTAGCTTTTTTAAGCGTAGAAC
ACATCATGAGAGATGTGAAAGGCGGCTGGTTGCTTCGTTATATGCATGCTAATGGGGCAAGTATG
TTTTTTATTGTGGTTTATCTTCATATTTTTCGTGGTCTATATTATGGAAGTTATTCGAGTCCTAG
GGAATTAGTTTGGTGTCTTGGAGTTGTTATTTTACTTTCAATGAT
Found at i:84328 original size:22 final size:22
Alignment explanation
Indices: 84300--84343 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
84290 GGCGCTTAGA
84300 GGCTGCAAGTGATGAATGTGTG
1 GGCTGCAAGTGATGAATGTGTG
* *
84322 GGCTGCAAGTTATGCATGTGTG
1 GGCTGCAAGTGATGAATGTGTG
84344 AGCGTTAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.39, T:0.30
Consensus pattern (22 bp):
GGCTGCAAGTGATGAATGTGTG
Left flanking sequence: Indices 83800 -- 84299
TGGCTGCCTTTTGTCAAAAATTTACACAGAGCTTTTTAGCAACTCATTCAGTTTAAAAAAATTCA
ACTAAAAAAAAATTTTCAGGCCGCTGGTTTTGTTTCCGTGCTTCCGGGTGGAGGGTGAAAGCGGC
CAGGGCGCAGCCAATTTTTTTTCTTCCGCCCTCTGGCTACGCCCTTAGTAAGGCTTCGTCATACG
AGCGGAGCTCGAAAACCCTCCATCCCCACATTAACAACATGTAGATTTGGAAAAAACAGGAACGC
AACAAAACCTTAACAAAATCGGGCCAGGAACGCTTATTTGTAGAATGTACTATTTGTAGGTTCTG
TAGGTTTTTACTACGTATTTGTACTATTAGATATTATTTACGTATGGCGTAGCCGGCAAAGATAA
CTGGATGACCCAGATTAACTCTGGCTACGCCCCTAATGCATCTGGCCACGGGCTCGCGCTTAGAT
AGATTAATGCATCAGTCTGGCGCTTTTCACTTTCTGGCGCTTAGA
Right flanking sequence: Indices 84344 -- 84843
AGCGTTAACAAAAACAATATATATTACATGGCTCCAGCAAATCAAGTCTATCGCCCCGCAACAAT
TTTTAAAATGAATCAATCATTTTCGATGATTGATAGTTACCTCCACTAAATTCTGGCTGGTGTAA
TCAGGAGAAAAGGGATTCGAACCCTTAACCTGTGGTTTTGGAGACCATTGTTCTACCATTGGAAC
TATTCTCCTAGAAAAAAAAGTGGTTCTTGGTTTATGGAATTTGCACCTATTTGTGTCTATTTAGT
AATAAGTTTGCTATTTTCTTTGATCTTAATCGGCGTTTCCTTTTTATTTGCTTCTTCTTCTAATT
TGGCTTATCCAGAGAAATTGTCAGCTTACGAATGCGGTTTTGATCCTTTTGATGATGCCAGAAGT
CGTTTTGATATACGATTTTATCTCGTTTCTATTTTATTCATTATATCTGATTCGGAAGTCACCTT
TTTATTTCCTTGGGCAGTTTCTCTTAACAAGATTGGTTTGTTTGG
Found at i:102256 original size:13 final size:13
Alignment explanation
Indices: 102238--102265 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
102228 ATGTAAGACT
102238 GTCAAACTTCTGA
1 GTCAAACTTCTGA
102251 GTCAAACTTCTGA
1 GTCAAACTTCTGA
102264 GT
1 GT
102266 TAACACGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (13 bp):
GTCAAACTTCTGA
Left flanking sequence: Indices 101738 -- 102237
AAGTGATATTTTTCAATAAAAAATAGATTTTTTTTACCTGCGGCCTGGACACGCTATGCCCCGGC
CAAAGGCCGAAGGGCTTGTGTTCAGATTACAATCCAGGATCTATAAGGCTTCGCGGCAGAATGAC
CATGGAAAGCAAAATGCAGGCACTCCAAAAGAGGCTCACGGCTGGAACACAGGCCATATTGATAG
GTATGTTGAACAAAGGCAGACTGTAAACAGGGTGGACAATACTCACCACCGAAGAGCCAAGATTA
AAGATGGCGCGAACATTGCAGTTGAATGAAGGTGCACAATCCGTGCATCGCATCCCTTCGACTTT
TGTTCAGCGACGAAATAAAAAAATATTTTTTTATTCTTGGTTAACCTATTTTCTAAGACAGGCGC
TTGGTTCGCCACCCGAACCCAGTTGCGAAAAAAAAACGTAAAAAAAAATATATATATTTTTTTGG
TAACCGTTCGATGGTGATACAATGTACTTAGTTAGATGTAAGACT
Right flanking sequence: Indices 102266 -- 102765
TAACACGAGCTTAGACTCTTGAAGATGGAGGGAAGCCCAAAGGATATGGATGTCAGGATTTTTTT
AGAAGTGGATCATATTACTCTCAAAAAAAGCGAAGGGCCGGCAGGACATTTATGCAAACGTTCAA
TTGCTAAAATTTTATTTTACATGGCCAAAACTCTCGAAGATACAAACATTATGAGAAGAGCCGTA
TGAGGCCGTAGGCTCACGTACGGTTCGGAAGCCGAGCTGCGTCAGCAATAGAGTGGCTTAGGTTA
ACATTGGAGCAGGAGCAGCTACCATTGCTTTAGCGGGAGCTGCTGTAGGTATTGGAAACGTATTT
AGTGTGCGCCTCGCTAGAGCGCGTTTGGATCAGCGAAGGTTAATAGATTATCGCCTGGGCGGTCC
CCTAACCCGTAGCGGAAACAGACCGCAGGGAACCATAGCATGGGGCCTGGTCAAGTTTCGTGGCA
CGGTTATCACGAGTGCGTCAGGGTCAAGCGTTACCCCTTCCAACA
Done.