Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_028040.1/NC_028040/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           105001
Total number of identified SSRs:                 82
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    14


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	58
2	24

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A	-	-	-	-	-	20	4			24
G	-	-	-	-	-	1				1
T	-	-	-	-	-	26	3	2	2	33
AT	-	13	3	4	1					21
CG	-	1								1
TA	-		2							2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A/T	-	-	-	-	-	46	7	2	2	57
C/G	-	-	-	-	-	1				1
AT/AT	-	13	5	4	1					23
CG/CG	-	1								1