Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_012116.1/NC_012116/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           476890
Total number of identified SSRs:                 50
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	36
2	13
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A	-	-	-	-	-	9	2	1		12
C	-	-	-	-	-	3	1			4
G	-	-	-	-	-	2	2	2		6
T	-	-	-	-	-	10	2	1	1	14
AC	-	1								1
AG	-	1	1							2
AT	-	3	2	1						6
CT	-		1							1
TA	-	3								3
TAT	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A/T	-	-	-	-	-	19	4	2	1	26
C/G	-	-	-	-	-	5	3	2		10
AC/GT	-	1								1
AG/CT	-	1	2							3
AT/AT	-	6	2	1						9
AAT/ATT	1									1