123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: ON482180
Parameters: 2 7 7 80 10 50 500
Length:  1414795

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079761--1079794	17	2.0	17	88	11	52	47	20	0	32	1.51
1087574--1087629	18	3.1	18	94	0	103	33	32	10	23	1.89
1089224--1089272	18	2.7	18	87	6	73	26	14	24	34	1.94
1092165--1092193	12	2.3	13	94	5	51	6	13	0	79	0.93
1105206--1105232	10	2.7	10	100	0	54	14	22	29	33	1.94
1105247--1105308	18	3.4	18	91	4	99	25	11	27	35	1.90
1112335--1112433	30	3.3	30	97	0	180	49	8	28	14	1.71
1119842--1119879	19	2.0	19	100	0	76	26	36	21	15	1.93
1126507--1126557	26	2.0	25	96	3	93	43	25	23	7	1.81
1128307--1128363	30	1.9	30	92	0	96	24	15	26	33	1.95
1128888--1128949	19	3.3	19	86	4	81	16	22	32	29	1.95
1128898--1128957	19	3.2	19	85	4	77	13	28	28	30	1.94
1138391--1138426	18	2.0	18	100	0	72	33	33	5	27	1.80
1139645--1139691	18	2.6	18	90	6	69	27	12	29	29	1.93
1139686--1139741	19	3.0	19	68	5	51	17	28	23	30	1.97
1139668--1139741	37	2.0	37	89	5	114	20	24	24	31	1.98
1159374--1159427	18	2.9	19	83	5	74	33	22	25	18	1.97
1159431--1159498	23	3.2	22	65	26	56	32	22	20	25	1.98
1159413--1159498	41	2.1	41	97	0	163	33	20	20	24	1.97
1159494--1159597	21	4.8	22	86	4	149	56	16	26	0	1.40
1159494--1159597	43	2.4	43	96	1	190	56	16	26	0	1.40
1159495--1159609	12	10.3	12	71	19	70	55	16	27	0	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162286--1162326	21	2.0	21	90	9	66	14	36	19	29	1.92
1171830--1171875	19	2.2	22	88	11	71	34	19	32	13	1.90
1171855--1171935	42	2.1	38	86	11	110	32	22	24	20	1.98
1171947--1171994	21	2.2	22	88	3	71	56	16	27	0	1.41
1187227--1187301	18	4.1	18	89	1	105	33	32	13	21	1.92
1196513--1196574	31	2.0	31	87	0	88	45	17	25	11	1.82
1234516--1234587	34	2.1	34	89	5	110	44	12	34	8	1.72
1252191--1252240	24	2.1	24	88	3	75	32	20	26	22	1.98
1256300--1256378	15	4.6	15	72	27	68	20	6	18	54	1.65
1256311--1256369	19	3.0	19	80	7	64	22	8	18	50	1.73
1262131--1262184	27	2.0	27	96	0	99	35	18	20	25	1.95
1262570--1262636	18	3.7	18	84	4	82	23	16	22	37	1.94
1262572--1262641	36	1.9	36	91	5	115	21	17	22	38	1.93
1264584--1264613	15	2.0	15	93	0	51	26	36	20	16	1.93
1272400--1272461	18	3.4	18	91	4	99	35	27	11	25	1.90
1272476--1272502	10	2.7	10	100	0	54	33	29	22	14	1.94
1274377--1274416	21	1.9	21	100	0	80	35	20	17	27	1.95
1279651--1279679	10	3.0	10	95	5	51	0	17	0	82	0.66
1288227--1288266	21	1.9	21	89	0	62	0	27	17	55	1.43
1288272--1288338	18	3.4	18	67	25	55	26	14	22	35	1.93
1288262--1288346	41	2.1	41	97	0	161	24	20	21	34	1.97
1288262--1288329	23	3.2	23	63	26	58	25	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1306370--1306460	45	2.0	45	91	4	148	37	14	13	35	1.85
1315974--1316041	33	2.1	33	91	0	109	35	14	25	25	1.94
1318935--1318994	19	3.2	19	81	9	61	30	26	30	13	1.94
1318962--1319004	19	2.3	19	95	0	77	27	34	18	18	1.95
1320861--1320910	24	2.1	24	88	3	75	32	20	26	22	1.98
1323170--1323197	14	2.0	14	100	0	56	14	28	21	35	1.92
1342818--1342842	12	2.1	12	100	0	50	36	16	32	16	1.90
1343929--1343957	15	1.9	15	100	0	58	13	34	6	44	1.71
1355994--1356050	30	1.9	30	88	0	87	21	22	21	35	1.96
1373581--1373647	34	1.9	35	87	3	100	26	14	14	43	1.85
1376783--1376815	9	3.6	9	92	8	57	30	45	0	24	1.53
1397641--1397691	13	4.1	13	77	10	61	39	21	9	29	1.85
1403406--1403452	17	2.6	18	76	6	51	61	10	10	17	1.55

Tables:   1   2

The End!