123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: ON482180
Parameters: 2 7 7 80 10 50 500
Length:  1414795

Tables:   1   2   

This is table  1  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145--195	24	2.0	27	85	11	72	27	9	19	43	1.82
1994--2109	22	5.2	22	79	8	92	28	15	18	37	1.92
2480--2525	23	2.0	23	83	8	58	50	10	34	4	1.57
11595--11635	19	2.2	19	95	0	73	31	19	36	12	1.89
59725--59762	19	2.0	19	100	0	76	26	31	10	31	1.90
100116--100159	21	2.0	22	91	4	72	0	25	18	56	1.41
103165--103190	13	2.0	13	100	0	52	69	0	23	7	1.14
111266--111294	13	2.1	14	93	6	51	10	20	6	62	1.50
129422--129452	15	2.1	15	100	0	62	32	22	19	25	1.97
138679--138732	18	3.0	18	75	20	67	29	14	24	31	1.95
139096--139156	31	2.1	28	82	14	72	27	31	13	27	1.94
173078--173122	19	2.4	19	85	3	65	53	13	6	26	1.64
183671--183700	15	2.0	15	100	0	60	20	13	26	40	1.89
200314--200361	21	2.3	21	82	7	53	16	18	12	52	1.75
202528--202583	24	2.7	20	76	23	62	23	26	17	32	1.97
216028--216089	19	3.3	19	90	0	97	29	22	32	16	1.95
224510--224534	12	2.1	12	100	0	50	16	32	36	16	1.90
256875--256906	16	2.0	16	100	0	64	12	31	6	50	1.65
269322--269365	19	2.3	19	96	0	79	31	20	36	11	1.88
270419--270455	18	2.1	18	89	0	56	43	2	13	40	1.58
270467--270495	14	2.1	14	100	0	58	27	0	27	44	1.54
271783--271834	25	2.1	25	85	3	70	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274721--274756	18	2.0	18	94	0	63	30	16	33	19	1.94
293544--293579	18	2.0	18	94	0	63	19	33	16	30	1.94
293976--294024	25	2.0	25	95	0	89	30	22	12	34	1.91
294174--294288	18	6.1	18	70	18	90	32	24	18	25	1.97
294161--294234	37	2.0	37	100	0	148	29	27	21	21	1.99
294161--294216	18	3.0	19	65	15	53	28	26	25	19	1.99
294220--294303	41	2.0	41	100	0	168	34	20	19	26	1.96
318717--318786	19	3.7	19	77	11	81	31	25	28	14	1.95
318730--318804	38	2.0	38	92	2	125	30	28	24	17	1.97
318813--318839	10	2.7	10	100	0	54	55	22	22	0	1.44
323833--323890	30	1.9	30	89	0	89	31	32	22	13	1.93
360993--361063	22	3.2	23	64	28	62	45	14	23	16	1.84
378947--378975	10	3.0	10	95	5	51	0	17	0	82	0.66
387522--387561	21	1.9	21	89	0	62	0	27	17	55	1.43
387567--387633	18	3.4	18	67	25	55	26	14	22	35	1.93
387557--387641	41	2.1	41	97	0	161	24	20	21	34	1.97
387557--387624	23	3.2	23	63	26	58	25	20	22	32	1.98
398449--398515	18	3.4	18	67	25	55	26	14	22	35	1.93
398439--398524	41	2.1	41	97	0	163	24	20	20	33	1.97
398439--398506	23	3.2	23	63	26	58	25	20	22	32	1.98
401351--401390	19	2.1	19	100	0	80	40	7	10	42	1.67
402065--402116	26	2.0	26	96	0	95	38	13	23	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416603--416644	21	2.0	21	90	0	66	30	33	4	30	1.78
464755--464801	23	2.0	23	100	0	94	53	8	21	17	1.70
467119--467169	23	2.4	21	87	12	70	31	39	0	29	1.57
467126--467169	23	1.9	23	95	0	79	27	43	0	29	1.55
474534--474561	14	2.0	14	100	0	56	42	28	0	28	1.56
481135--481216	41	2.0	41	95	0	146	26	13	20	39	1.90
482101--482140	20	2.0	20	95	0	71	45	12	25	17	1.83
487955--488015	24	2.5	24	89	0	95	40	16	4	37	1.70
497320--497385	30	2.2	30	91	0	105	16	28	6	48	1.70
499705--499742	18	2.1	18	90	0	58	39	23	18	18	1.92
507265--507301	18	2.1	18	94	0	65	48	24	16	10	1.77
524393--524427	18	1.9	18	94	0	61	48	2	42	5	1.41
545342--545397	19	3.0	19	86	2	78	28	32	17	21	1.96
545345--545400	18	3.1	18	86	2	76	32	30	14	23	1.94
557432--557476	23	2.0	23	100	0	90	31	28	8	31	1.88
564479--564505	10	2.7	10	100	0	54	33	29	22	14	1.94
567912--567938	10	2.7	10	100	0	54	0	22	22	55	1.44
587826--587881	28	2.0	28	96	0	103	25	7	26	41	1.81
592326--592393	14	4.9	14	67	13	50	45	23	11	19	1.83
593389--593489	41	2.5	41	95	3	177	34	18	21	24	1.96
593413--593490	23	3.6	23	70	22	87	34	16	20	28	1.94
593598--593640	19	2.3	19	84	8	52	39	25	25	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597750--597822	27	2.7	27	81	8	78	26	12	32	28	1.92
608524--608579	28	2.0	28	89	0	85	19	23	7	50	1.72
617024--617061	19	2.0	19	94	0	67	26	34	21	18	1.96
617071--617112	22	2.0	22	90	4	68	57	16	26	0	1.40
633703--633758	24	2.7	20	76	23	62	23	26	17	32	1.97
638976--639010	12	2.9	12	86	0	52	22	2	28	45	1.67
639156--639229	34	2.2	34	95	4	132	43	14	31	10	1.80
653835--653861	10	2.7	10	100	0	54	55	22	22	0	1.44
694051--694118	19	3.6	19	72	7	59	17	27	23	30	1.97
711656--711711	19	3.0	19	86	2	78	28	32	17	21	1.96
711659--711714	18	3.1	18	86	2	76	32	30	14	23	1.94
711729--711755	10	2.7	10	100	0	54	33	29	22	14	1.94
719432--719471	21	1.9	21	94	0	71	2	25	22	50	1.62
751311--751335	11	2.3	11	100	0	50	28	0	40	32	1.57
759599--759679	19	4.3	19	76	3	92	32	20	32	14	1.93
759607--759686	37	2.1	38	90	2	126	31	21	30	17	1.96
759599--759711	56	2.0	56	86	6	158	30	22	28	18	1.97
759636--759686	19	2.7	19	81	0	75	29	21	31	17	1.96
763261--763299	17	2.2	19	90	9	64	53	10	10	25	1.66
777380--777418	19	2.1	19	100	0	78	10	35	20	33	1.86
840428--840469	22	2.0	22	90	4	68	19	19	11	50	1.78
844579--844622	19	2.3	19	92	0	79	27	25	31	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
844587--844629	19	2.3	19	87	0	59	30	20	32	16	1.95
890797--890823	10	2.7	10	100	0	54	0	22	22	55	1.44
897964--898010	18	2.6	18	93	6	78	36	27	12	23	1.91
900568--900611	19	2.3	19	96	0	79	31	20	36	11	1.88
900603--900683	19	4.3	19	81	6	103	27	30	22	19	1.98
907566--907604	18	2.2	18	95	0	69	15	7	28	48	1.72
911066--911158	18	5.1	18	82	3	114	22	15	31	31	1.94
911069--911161	19	5.0	19	82	3	118	21	17	32	29	1.96
911069--911158	37	2.4	37	100	0	180	22	15	32	30	1.95
911153--911196	19	2.3	19	96	0	79	11	36	20	31	1.88
914906--914967	18	3.4	18	91	4	99	35	27	11	25	1.90
914973--915006	10	3.5	10	92	8	61	58	17	23	0	1.38
914973--915036	20	3.2	20	72	12	60	48	21	26	3	1.65
922782--922816	18	1.9	18	100	0	70	31	28	11	28	1.92
929743--929787	23	2.0	23	100	0	90	31	8	24	35	1.86
933840--933883	22	2.0	22	100	0	88	27	13	27	31	1.94
937584--937652	23	3.0	23	91	0	111	28	28	20	21	1.98
947674--947714	19	2.2	19	95	0	73	31	19	36	12	1.89
955889--955940	26	2.0	26	84	0	68	23	15	28	32	1.95
988571--988598	12	2.3	12	100	0	56	57	14	28	0	1.38
997135--997173	20	2.0	20	100	0	78	51	25	0	23	1.49
1004623--1004653	15	2.1	15	93	0	53	64	0	25	9	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013175--1013275	18	5.6	18	77	11	100	31	25	15	26	1.96
1017883--1017956	34	2.2	34	87	0	103	45	12	31	10	1.76
1022325--1022375	10	5.0	10	80	19	61	0	23	17	58	1.38
1022381--1022434	18	2.9	18	88	2	72	22	14	31	31	1.94
1022384--1022439	19	3.0	19	89	2	78	19	17	33	28	1.95
1025563--1025609	18	2.6	18	100	0	94	36	25	14	23	1.93
1045355--1045390	18	2.0	18	100	0	72	55	11	16	16	1.68
1062102--1062131	15	2.0	15	100	0	60	40	13	13	33	1.83
1071203--1071280	18	4.1	18	73	20	77	33	23	16	26	1.96
1071212--1071295	41	2.0	41	100	0	168	34	20	19	26	1.96

Tables:   1   2