Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: ON482180
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1414795
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 2 of 2
Found at i:1079783 original size:17 final size:17
Alignment explanation
Indices: 1079761--1079794 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
1079751 GCCACTGAAA
1079761 CCCAAAAT-ATATTATAT
1 CCCAAAATCA-ATTATAT
1079778 CCCAAAATCAATTATAT
1 CCCAAAATCAATTATAT
1079795 GTATCCTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.94
18 1 0.06
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (17 bp):
CCCAAAATCAATTATAT
Left flanking sequence: Indices 1079261 -- 1079760
TCCAAAAATGCCCCTCTCTATCAACCCCCTCTGTTCATTGTTCCTCGGTACTGTTGTATCAAGCA
TGTCAAACAAAGATGAGTAGTGAAACAAGGCCTCCCGGAATCGAGTCACGAAGAAGGGAGCACCA
TAAGACCCGTTAACAATTGCATGAATGAACACACGTGGGTTAATTCGCCTGAAGGTTTTTCAAAC
CCCTAGGGCTATCCATTGTCAAAGTCTCATCAACAAGATTGCGAAAGCGGTACAAACAATTTGCT
ATGACCACCTCATCCTGCCTTATTTGAAGATCTTCAACACGAATTGTTTCCCTTTTTTTAGCTAT
GCCTTGGTAGTCAAATGGTACACCAAAACTATTTGAATATTCTCTTAACCGTCGGCCTGTCTCCT
CCACCTGTCGGCCGAAACCCAGGTTTGGGCACCTCTATACCAGTGATCCTTAGCCTAGGAGTGGG
GCCCGACCTCTTAGCCAAATGCTCAATCAATGAAGGCCACTGAAA
Right flanking sequence: Indices 1079795 -- 1080294
GTATCCTCAAGGCCCCTTTGTAGAGTTCAGAATCGTCTTATTAGAGAAGTAAAAAGTCGCTCTTT
TTGCTCTAGCGAGCTCTTTTTGGCTCTTCTTTCTGCTCTACACGTTAGTAGTTACGAGCTCATTA
GTAGTTACTCGCTGGAAATCCTTTTTTATAGTTTCATTCGTTATCTCATACCGATAGGTAGTTAT
GGAACTCGTCTCAACTTGAATGAAGCCAGTCCTTTCCTTTAGTTACAATTTTCTAGGAAAGACTG
AGGCAATTGCACCGCTCGATCACGAGTACCGAACTTGACAGTCTGATCGATCAAGAGTTTCAGTT
TCAGTAGGTCTTGAGTAGAGATCCAAAGCATTGCCGGAAATAACGATTGCTTTCTTTTTATATGC
TTACTCTATATGTTAGCTCGCTCCTTATCCTCAATCCTCACTATCTCGACAGAATCAAGCATATT
CTTCGCTCGGTCAAAGTAGTCCATTCTGCTAAAGCACTCAAGCAG
Found at i:1087597 original size:18 final size:18
Alignment explanation
Indices: 1087574--1087629 Score: 103
Period size: 18 Copynumber: 3.1 Consensus size: 18
1087564 CCAGCGAGTA
1087574 ACTACTAACGAGCTCTAC
1 ACTACTAACGAGCTCTAC
*
1087592 ACTACTAATGAGCTCTAC
1 ACTACTAACGAGCTCTAC
1087610 ACTACTAACGAGCTCTAC
1 ACTACTAACGAGCTCTAC
1087628 AC
1 AC
1087630 ATGCCGTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.34, C:0.32, G:0.11, T:0.23
Consensus pattern (18 bp):
ACTACTAACGAGCTCTAC
Left flanking sequence: Indices 1087074 -- 1087573
ACTAGTTATTAAGTATAGTAGTTATACCGAAACCCTAGGATTCTTCCTTTATCAACTAAATCACT
TCAATCTGAGTTTTGAAGACGGAACGAAAACACTCCAAACTTGTTTGCAACGATAATTGAATAGT
GTAGAATCGATAATTGAGGCTCGCTCCCAGTGGACCGACACCCTAACTATACTCATCGGTTATTT
GTACGCTTGCAACTACCTTGATCTGGGTGAAAAATATGAGTGAGTCTGCCCGTTGCATTTAATTT
GTTTGAATAAATCAAAACCGAGGGGACGGTATTTATATTCTCTGTGATGCTTTCCGTTAGTTGCT
CCGTTCTATCAGTTTTCTCTGACAAGGGAAGAGTAGAAAGAAATGAAAGAGATACTTGGTTGGTT
AGTTTCTCTCGGAGTCCCTTATTATATTATCAAATCGAGCCCAGTTCAAGAATTAAGCGCTCATT
CTCCCGACCTCTCTCTCTAAAAACTAGAAATCTCCCCAGCGAGTA
Right flanking sequence: Indices 1087630 -- 1088129
ATGCCGTAGTTACTCGCTCGTGCCTACGTTACTCGCTGGGTGGGACAAGGGGAGGAAGTGTGCGT
ACTTGGTCAAACGGTCAACGACCACTAATATAACATCCTTTCCCGATGATAGGTGACCTGCCCCA
CTAACTCTGAATGCCCTACCTAAGCTTCTTAGAATTACTTTTATAAAACACCGGAAGGCATACTT
GACTTTTTCCTAAGGAAGAGTGGATTTCTTCTTCCAAAAACTAGAAAACCCGTGTTTTTTGGCAT
ACTTCACTGTTTCCCTTGGGACAGATCATTTGAAAAGTGTCAAAAGTAGCCCCCTACTTGTGCAA
CTACATCTTCTCTCTTGAAGTAAGGACAAGACAAAGCAAAAGGAATAGCTGGCTGGACATCCTCC
CTTGAGCATCCCATATTTTATTTTATACTTACCTTCGATATTACACTACTTTTTCTTGTTTACTC
AAAATTTCATTGGTTTTATACAGCGCATCTCTTTTCTCTCCGTTT
Found at i:1089278 original size:18 final size:18
Alignment explanation
Indices: 1089224--1089272 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
1089214 TGGCTCGTAA
1089224 CATTAGTAGTGTA-GAGCT
1 CATTAGTAGT-TACGAGCT
*
1089242 CGTTAGTAGTTACGAGCT
1 CATTAGTAGTTACGAGCT
1089260 CATTAGTAGTTAC
1 CATTAGTAGTTAC
1089273 TCGCTCGTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (18 bp):
CATTAGTAGTTACGAGCT
Left flanking sequence: Indices 1088724 -- 1089223
ATCCAGGCTACTCTTAGACTGATCGAGCAAACCCTACCTATACCTCAACCTATCCGTCCTCACAA
GCCTCGAATACATAAACCTTGACATGCTAGCTTACTTGCTTTGCTTGACGTCGTGAATAAATATC
TCGTGTATACCTACTGAGCAAGCCCTCTCAGCTTACCACCTACGTTCCGCCCTTTCGGAAGAGTT
TTCTCAACCTGTTTCCGATGTTTGGTTCCTCTGGCGCCTTGTCAACAACAACTACTTGACCTAGG
AAATTCAAAGAATCGATCTGCAAGACAGAGAATTGGGAGGCTCCAATCCGGCATCGAGAAGTCAC
TTTGTAAAGCCTATGCACTATGTTCCGGAGGCTGGATAGCAATCCTTTACGCAACGAGAATCAAG
TAAGCTTACCTCGAAGTCATCTTTGTGTCACTTCCCATATGCCTACTTCTAAGCTAAAGTAAGCT
CTTTTTGCTCTTGAAGGCTCTTCTTTCTGCTCTTTTGGCTCGTAA
Right flanking sequence: Indices 1089273 -- 1089772
TCGCTCGTGCCTACGTTACTCGCTGGCAAAGCAAAGGAGAGCGAGGAGCAAGTTTTCAAGAAGGA
GTTGAGCTCTATCTAGAAGTAGATTTTCTTTTCTCTTTTATGCCACGACGCATAAGACTGACTGA
CTCTATTAAGTTGTGCCTAGGGATAAGTTTTTTCAAAGAAAATAAGGCCCTGCACTTTTGAGAGT
GCGAGGGGAACTCAGTCCGTATCTGTAAAAATATATTTGGGTGAGGAGCTTTTCCTAATTATTAT
ATTAGTATATATATATAATTGATCGAAGGAAAGGGGGCAAGAAGAGAAGATTCTATGATCAACCT
ACTACCGAAAAAAAAGGATTTTTTCACGCCCTTCCCACGTCAAGGCCAAGAATACCTGCACCGAC
CCTAAAAAGAAGGATACTCCCTAAGAACTCTGTTCCTTTCAACTTGAATCTTCTTCCGGAACGCA
GAATTACAAGCTCCTTTAATTGTCAAGTTAATTTTTGACCTACTT
Found at i:1092194 original size:11 final size:13
Alignment explanation
Indices: 1092165--1092193 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1092155 GAAAAATTTC
1092165 TTTTTATCCTTTT
1 TTTTTATCCTTTT
1092178 TTTTTA-CCTTTT
1 TTTTTATCCTTTT
1092190 TTTT
1 TTTT
1092194 AAGGTCTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTATCCTTTT
Left flanking sequence: Indices 1091665 -- 1092164
AAGAAAAAAACTTGTCTTTCCACAATTTTAATCTCGAGGCTTTCAAAGGCATCAAAGCAATTGGT
ATCCGATTGAATGAAAGATTCGTGTCGACCCCTTTCCTATGTTGCTTTGCCTAAATAACTATCTG
GTACGTTCAGGTGAAGTTCTTCTTTTTTTCTAAAGGTTTTCCTTTATTTGTATAAAATCACTTTT
GAGCTTTTCATCAACGGAAAAATATATATAAATAATGGTTGAATAGATGCGAATCCCCTATAAAA
AGCTATGTATTTGATGTTTCATTATTAGGTTTTGATTTTTGTAGCTCACTGGTCTTCTCTACTGG
CCGCCCATTTGACCATTTTTTTGCACAAGCTTCTGGATTCACTTTTTAAGGGGAATAAAAAGGAA
ACCCTTGCCAGTGCCCTCACTCCAAATCCATTTCTTTTGTTTGAAGTGTGAAAGTTCAGTTTTTT
TTGAGAATTTTGAATAGAATTCTATTTAGAAAGTAGAAAAATTTC
Right flanking sequence: Indices 1092194 -- 1092693
AAGGTCTTGGGTTCATTATATCACCAATGACGCGCTCTTCTTGATGTTCTATGGCGGCAAGGTTG
TTGAATCAAGAAATTTCTCTCTAAATCATCCACCAGTGCTTTTTAATTCATCTCAATTTAAGTAT
ATATAATATGAAACCTTTGGGTATTTTCACAAGTTCTAATAAATTAACTTGAATGGGAGTCATGT
CTAGATTAATTCCATTATTTTTCTTTGTAGAAGTAACATGTTTTAACAATACATGCAGTACTTAA
CTATCTTTAGGAAATTTCTTTCTTTAAGCATTTCTTTATCCAAGTGCGGTTTTGGAACTTATGGT
TATTGGTTGAGGTGAAAATCAAACAATCATTTACAGTGTTTTTCTTCGCTATCGACTAGAGGGCT
TATAAATACTTTGAGATTTGAGACAAAAAAACAATCACCAAAAACCCACTTTCTAGTTAGTATAA
GCAAGTTTCAATTCAAAGTTGAACTGGCCAGAAGAAGGCAAAATA
Found at i:1105219 original size:10 final size:10
Alignment explanation
Indices: 1105206--1105232 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1105196 GAGCTCTTTT
1105206 GGCTCTTGAA
1 GGCTCTTGAA
1105216 GGCTCTTGAA
1 GGCTCTTGAA
1105226 GGCTCTT
1 GGCTCTT
1105233 TTTGGCTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.22, G:0.30, T:0.33
Consensus pattern (10 bp):
GGCTCTTGAA
Left flanking sequence: Indices 1104706 -- 1105205
CAACAATGCAATGCAACATAAGGGTTTGTGCAAGCTCTTAGGTCTTTATTACACAATTGAATACA
AAAAAGGGACTGAAAACAAAGTGACGGATGAGGCGCGCAGCGGGCAAATAAGTAATTTTTGTATT
GAAGTTGCAGGAGTAGCTGCCTTTTCTTAGCTATTACCACAGTGGGTGCAAGAACTGCAGCAAAG
CTATGCAGGTGATGACTGGATAGAGGGATTTAAGAGGCAAGCTAAAGAAGATCACTCATACAACA
CAAAGATCACAGTGCATCTAGGCACTGTCAGATATAAGATACCATCATAAAGTGGAAAGCTATGC
TCATATTTGTCACTAAATGCTAATATATTTTATTCAAGGAAATTATTTATTAGATAAAGAGTATT
TATTAACATGCTAGGGCGGTACAGACAACTTCTTGCTTGATTGGAATAGGAGGATAGGGCACAGC
TCTCATTCACTTAGTAGGGCTCTTTTTGCTCTAGCGAGCTCTTTT
Right flanking sequence: Indices 1105233 -- 1105732
TTTGGCTCTACACGTTAGTAGTGTAGAGCTCATTAGTAGTGTAGAGCTCGTTAGTAGTTACGAGC
TCATTAGTAGTTACTCGCTGGATGTAGCGAGCCAAAAAGAGCCAGGGAGCCCAAGAGCAGGTGCT
CCGGACACTGGAGGCTGACCCCAGCCAACTCGATGAAATCGTTCAAGATTCCATTAAGCATACCT
GCTGAGCCGGGGCTCGATCGAGGGCAAGCCGTACGAGAGTGAGTCTGACACCAAGAATTTCCTTC
GCTCGGGAGCTGAAGCAGGGAATCGAAAACAGTAGTTATAGGCCGGGGACAGGTCAAAGATCTCA
TTATAGATATCCGGATAGCCGGCAAAGAGTTGGCAGCATGAATGGTAGAGGTTGATTTATCGTTC
ATTCGTATCTGGCCGAATCATCTTCTCCAGCCAATAATGGTGAAACTCCAATGTGCTGTAAGGTC
CACACTACTACAGGTATGAAGAGACCGGTCTAGTCCTACTTGAGA
Found at i:1105311 original size:18 final size:18
Alignment explanation
Indices: 1105247--1105308 Score: 99
Period size: 18 Copynumber: 3.4 Consensus size: 18
1105237 GCTCTACACG
1105247 TTAGTAGTGTAGAGCTCA
1 TTAGTAGTGTAGAGCTCA
*
1105265 TTAGTAGTGTAGAGCTCG
1 TTAGTAGTGTAGAGCTCA
1105283 TTAGTAGT-TACGAGCTCA
1 TTAGTAGTGTA-GAGCTCA
1105301 TTAGTAGT
1 TTAGTAGT
1105309 TACTCGCTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 2 0.05
18 39 0.95
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.35
Consensus pattern (18 bp):
TTAGTAGTGTAGAGCTCA
Left flanking sequence: Indices 1104747 -- 1105246
GTCTTTATTACACAATTGAATACAAAAAAGGGACTGAAAACAAAGTGACGGATGAGGCGCGCAGC
GGGCAAATAAGTAATTTTTGTATTGAAGTTGCAGGAGTAGCTGCCTTTTCTTAGCTATTACCACA
GTGGGTGCAAGAACTGCAGCAAAGCTATGCAGGTGATGACTGGATAGAGGGATTTAAGAGGCAAG
CTAAAGAAGATCACTCATACAACACAAAGATCACAGTGCATCTAGGCACTGTCAGATATAAGATA
CCATCATAAAGTGGAAAGCTATGCTCATATTTGTCACTAAATGCTAATATATTTTATTCAAGGAA
ATTATTTATTAGATAAAGAGTATTTATTAACATGCTAGGGCGGTACAGACAACTTCTTGCTTGAT
TGGAATAGGAGGATAGGGCACAGCTCTCATTCACTTAGTAGGGCTCTTTTTGCTCTAGCGAGCTC
TTTTGGCTCTTGAAGGCTCTTGAAGGCTCTTTTTGGCTCTACACG
Right flanking sequence: Indices 1105309 -- 1105808
TACTCGCTGGATGTAGCGAGCCAAAAAGAGCCAGGGAGCCCAAGAGCAGGTGCTCCGGACACTGG
AGGCTGACCCCAGCCAACTCGATGAAATCGTTCAAGATTCCATTAAGCATACCTGCTGAGCCGGG
GCTCGATCGAGGGCAAGCCGTACGAGAGTGAGTCTGACACCAAGAATTTCCTTCGCTCGGGAGCT
GAAGCAGGGAATCGAAAACAGTAGTTATAGGCCGGGGACAGGTCAAAGATCTCATTATAGATATC
CGGATAGCCGGCAAAGAGTTGGCAGCATGAATGGTAGAGGTTGATTTATCGTTCATTCGTATCTG
GCCGAATCATCTTCTCCAGCCAATAATGGTGAAACTCCAATGTGCTGTAAGGTCCACACTACTAC
AGGTATGAAGAGACCGGTCTAGTCCTACTTGAGAACAAACTACAAGTGACCTAATAAAACAAATG
CCAAAACCAAAGCGATGGCATACCAATAAGAAATAACCAACAGAA
Found at i:1112439 original size:30 final size:30
Alignment explanation
Indices: 1112335--1112433 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
1112325 AGCGAGAACT
1112335 AAGGAAAGTCAAGTCAAAGCAGATGAAGTA
1 AAGGAAAGTCAAGTCAAAGCAGATGAAGTA
1112365 AAGGAAAGTCAAGTCAAAGCAGATGAAGTA
1 AAGGAAAGTCAAGTCAAAGCAGATGAAGTA
**
1112395 AAGGAAAGTTGAGTCAAAGCAGATGAAGTA
1 AAGGAAAGTCAAGTCAAAGCAGATGAAGTA
1112425 AAGGAAAGT
1 AAGGAAAGT
1112434 TGAGTCCGCC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.49, C:0.08, G:0.28, T:0.14
Consensus pattern (30 bp):
AAGGAAAGTCAAGTCAAAGCAGATGAAGTA
Left flanking sequence: Indices 1111835 -- 1112334
ATTAGTAATTAAACACTATCCATATATGAAGTTGGGCTCTCTAAGCGCAGTTCTGCTTTGTTTCA
CCTTCCTCCCAGGAGCGAGCTCATTGACACAGTACCGTATGAAGGGAATTCTTTTTGGGGCACAC
CACCCGTACGACCAAGGGAATGATTTCTGAGATGCAAAGCTTACTGAATCAGGATTATTAAATAC
AAGCAAGCTTCAAATCATCTGGGAGCTGCTCGGTGCCATCGAGATACTGTATTACTTTTCTCATG
CTGGGTCCGGATCCCCTTAGATGGTGGACCTACCAAGGCCAGAATGTCATAACCACCATCAAAAT
TTCCAATGCTCGCCGGCAAACCGTGAAAGTAGTGGGGGCTCTTTATAGCTACAAGGAAGTCGTCC
GCATAAGGAGCATAGCGGATCAGGATGTCAACCCGTCTCCAAATGGAACGATAGTGGCCGTACTT
GAATTTTGGAAAAACAGGAACAATAACCATATCAAAGCGAGAACT
Right flanking sequence: Indices 1112434 -- 1112933
TGAGTCCGCCTAGCTAGTCAATCGGTGGTGGCGGATTCTTATTGTATAGAAAGATAGATAAGAAG
CGGCGTACCCCATTCAAAGATGCTTTTTAGAGAGGCAAGCCTAAGCCAAGTGTTGAGAGAAAGTG
TCTCATAGGGTTGGAGAAAGTGAGGGGCCTAGCCTCTAAAAGTGAAGATTGACGCTTTTGAGACC
TATCAGGCTAGTTCCAGAATTGGTCGACTGGCTCCATAAAAGTGAGTATCAAGGGTTGAGAGAAT
CAATTCGTCAAAAGTCAGCAAAAGTAGTCGATTTTAGCTGACAACCAAGATTCTTCATCAGCTCT
ATCTCTTGCACTTGCCTTTCTTTGGTCATGGTGGATCTCGATCCGTGGTGAAGGTCAGCATACTT
ATTCTCATTGGTAGCACCAGCTTATGGAAAAACTGAAAATTAGTAAGTTAGTAGCGGAATGAAAA
TGAATTAATCCACTTTGCCATTGTATACATACGATAAACGTTTTC
Found at i:1119866 original size:19 final size:19
Alignment explanation
Indices: 1119842--1119879 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1119832 GAGTAACGTA
1119842 GGCACGAGCTCTACACTAC
1 GGCACGAGCTCTACACTAC
1119861 GGCACGAGCTCTACACTAC
1 GGCACGAGCTCTACACTAC
1119880 TAATGTGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.37, G:0.21, T:0.16
Consensus pattern (19 bp):
GGCACGAGCTCTACACTAC
Left flanking sequence: Indices 1119342 -- 1119841
AGCAAGCCATAGAAGAAGCTAATCAAACTAAAGAGAGCACATCCGTGCACAGCAGTAAAGTAGCA
TTGGTAGTAGCATTTAAGTAGTAAAAATAAGCTATTAATTAGTATAAGAAAGCAGGAAATTAGCT
AAGCTTTACATTAGTAAAACCTCCATTTTTTCATTTCAGCCCGCCTCAATGTTTCAACACTCGTG
CAGCTAAAGTGAAATTTGACCTTTTCTACCAGGTTTCTCAGATTGAGAACCCACCTTTATGTACC
GTAAGTTACTTATTTATACTTAAGCCGTTGACTATACACACCAAGCTACAGATGTGTTCAGAAAA
GTTGCAGATTACGTGGTATAGTTTTTCTTTTTAGAGCATTGAGTGGGTAATGGAGAATGCGAATT
TTCGCCTCCACCATTGAATGAATGGGATGATGCTTCGGTTAGTTAATAGTGATGCCATGGTTGGG
GAAGGTGCTCTAGATCTTGCTGCTGCTTTCCCAGCGAGTAACGTA
Right flanking sequence: Indices 1119880 -- 1120379
TAATGTGTAGAGCCAAAAAGAGCAGAAAGACGAGCAAAAAGAGTCAAAACCATACATATTTGAAG
TGAAGCTTACACTCCAAAAAAGGTATCACCCAATTTAATGAGTTTTTTTTTCTTTTTTTAAAGAA
TAGTCCACCAAAGTTTCAAGAGCGAGCGAAAAGATATTCTTTCAGAAAGGGCCAAGCACGGCTGA
GGTAGCTATCCGGGTTGAAAGATCTATATGCTATCCTAGGAATGGGGGAGGAGAAAGATAGTCGC
TGGTGGTGGCGTGAAGGCGGTTGTGGAAGGAAAAAGATGCAATGGAAATGAGATTCATTGTCAGT
TGAGGCTTCCTGGCTCTTCTTTTTGCTCGTAACATTAGTAGTTACGAGCTCGTTAGTAGTTACTC
GCTGGGGAAAAAAACAATTGAAATCAAAAAAAACTCTACTGTTCGAGTTCGATATTACCGATGCG
AGTCGGTGTAACAGGAGATCCATCTGCCGTATGAATAACTGGTAA
Found at i:1126543 original size:26 final size:25
Alignment explanation
Indices: 1126507--1126557 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
1126497 GAGTAGAAGC
1126507 AGAACAAGGCAGCAACTTACGACGCA
1 AGAACAAGGCAGCAACTTA-GACGCA
1126533 AGAACAAGGCAGCAACTTAGACGCA
1 AGAACAAGGCAGCAACTTAGACGCA
1126558 TAATAATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.43, C:0.25, G:0.24, T:0.08
Consensus pattern (25 bp):
AGAACAAGGCAGCAACTTAGACGCA
Left flanking sequence: Indices 1126007 -- 1126506
ATAACATCGAGCTCAAGGTCTTTGTTTTGGTTGGGGTGCATTGGATTTGTGGAATCTTCTGGTGA
AGTAGTTGCAGCGTGCACAATGGATTTCATACGAAAACACTTCTTTGTTTACTTGATTGTGTCTA
GTCTTTGAACTAAGATTAATTAGAGAATTAAATGGAGGTGAGCAAAGAAAGGATGTCAAGAATTC
AAAGGGATTTGGACTCAATGGTCCTGTATTTATGGACTTACCTATATGGAGAGAATAAACTACAA
GGAGGTGCGAGACAAGATAGAGGCTAGAGAGCTTCCCCTCGAAAGTAGTTCAGAAGACCACTGAG
TGAGGACCTATATACTGAGGGAGACTCTATACTAAAGTAAACAATACTAAGGTATAGGAGAGTGG
CTGGGATAGTAAGAATACGAAAGAGAAGAAATGTTCATCGACATAATATCATATAGCCGTGTGTT
GGTAGTCTTCTTTTTTATTCGTTCTTTCTTTTCTGGAGTAGAAGC
Right flanking sequence: Indices 1126558 -- 1127057
TAATAATAGAAATTCACTAAGAATCATGAGATAATTATCTCGAGATAAAGATCTAGTACTAATAA
AATAAGAGCTGTCTATATATATAGATCACACCTTAATAAAAGAAAGAACAGCATGCACAAATCAA
AACATTCTAAGCAAAGCCTTTAAATCAATTTGGTAGGGCTGGTATCGTCCGATTCTGCTCTTTTT
CATATATCACCACCCTTCCTTTGGATAAGAAAGAACTAGGTTGATGAAAGTGGTTAGAAAAGATA
AAGTCAAAGTATGATGGGACTTACTCTTGATCGATACAAGGCTGGTGTAGCCAAAGAAAGGCTAA
AGAAAGCAAGCCATAAGGTATAGACGGACGAGACATTAAGTAAAGAACTCAAGATAGCATCAAGG
GAGGTGTAACTTACTTGAAAAGTATAAAAACCCAGCGAGTAACTACTAATGTGTAGAGCCAAAAA
GAGCCAGGAAGCCTATTACTTACCACAAATTGTACCCAAGAAAAC
Found at i:1128343 original size:30 final size:30
Alignment explanation
Indices: 1128307--1128363 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
1128297 AGTTTTCTTT
* *
1128307 TTTGAAGCGGCAATTCAGGTTATGTTCCGA
1 TTTGAAGCGACAAGTCAGGTTATGTTCCGA
1128337 TTTGAAGCGACAAGTCAGGTTATGTTC
1 TTTGAAGCGACAAGTCAGGTTATGTTC
1128364 AGATCTTAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (30 bp):
TTTGAAGCGACAAGTCAGGTTATGTTCCGA
Left flanking sequence: Indices 1127807 -- 1128306
ATTCGATATTCTCCGTGAAGACTCATCCTTGCTTTCAAACAAAAGGAGAAGATAAGTTCTCTACC
CCAATTCTCGACCCATTGGCCGAATGAGGATGCCTTCGAATCACCATTGATAGCCGACCTCCCAA
TTCTCCTTTACTTCGCTTCTCACTTCATTTTCTTAAATCGACCCAGACCTACCAAAGAAATGAGT
TCACCCTTGACGCATCCCCCTTAATTTATACGGCAAGGGCTTTTCCTTTCCAGCTTGCATTTCTG
GTCATACCTTCCTGTCCCGCCTAATAACGGTTTACTTTCTTTTTGGTGTGACAAGCGAGCACCCT
TTACACGGAAAGCAGGCAGGTCCGTTTCAAGCTATTAAAGTCTAAGAAGCGGGAACACATGAGAG
CGTGAATGCTTTATCTGTGCCGGGACTGGTAAGAGTCGGCAGCACAAGGAACTCAATTAGACCCA
GTAGCTCCCCGGAGGCGTGTCAAATTGTTCCGATCAGTTTTCTTT
Right flanking sequence: Indices 1128364 -- 1128863
AGATCTTAGCCCACATATGTATGTTCGAGACCCACTTCGTTTTGGATGAAGGCAAGGATATCGCT
TAGTCTCATTTCCCAAGTTAGATATATTCGAATGCAAAAGCTAGATAGACAAGAGGAAAATAGAG
ATTATTTGGTGACGGAATTCTAGAACTTAATTAGCCAGTTATCTTAGCTTAGATCGATACACTTG
TTCGGCCATTTTAGTTTCACAAGTCTAAGGATAAGCCTCGTCGTTATTTGGTTAGTGAAACAGTT
CCTTTGCTCTACTTTTATCCTTTCTTGAATAGGAACTTAGGCGGTTGGATCCCGAGTCTTATCTT
TGTCACTTACTTGTTTGGGGTTCTTATAATCTCAGGTTTAATATGACCTGTTTATTTCTCTTCCT
AGCCTACTTTGACTGCCCCGGCTGGAGCGGATCATGCTTGAAATGGAGCACAGCTAGCAATAGTA
ATAAAAACAGTAAACCGTACGGAATTACTGCTCTTGTTGCTCCCT
Found at i:1128912 original size:19 final size:19
Alignment explanation
Indices: 1128888--1128949 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
1128878 CTACACATTA
1128888 GTAGTGTAGAGCTCGTGCC
1 GTAGTGTAGAGCTCGTGCC
*
1128907 GTAGTGTAGAGCTCATGCC
1 GTAGTGTAGAGCTCGTGCC
**
1128926 GTAGT-TACTCGCTCGTGCC
1 GTAGTGTA-GAGCTCGTGCC
1128945 GTAGT
1 GTAGT
1128950 TACTCGCTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
18 2 0.05
19 36 0.95
ACGTcount: A:0.16, C:0.23, G:0.32, T:0.29
Consensus pattern (19 bp):
GTAGTGTAGAGCTCGTGCC
Left flanking sequence: Indices 1128388 -- 1128887
TCGAGACCCACTTCGTTTTGGATGAAGGCAAGGATATCGCTTAGTCTCATTTCCCAAGTTAGATA
TATTCGAATGCAAAAGCTAGATAGACAAGAGGAAAATAGAGATTATTTGGTGACGGAATTCTAGA
ACTTAATTAGCCAGTTATCTTAGCTTAGATCGATACACTTGTTCGGCCATTTTAGTTTCACAAGT
CTAAGGATAAGCCTCGTCGTTATTTGGTTAGTGAAACAGTTCCTTTGCTCTACTTTTATCCTTTC
TTGAATAGGAACTTAGGCGGTTGGATCCCGAGTCTTATCTTTGTCACTTACTTGTTTGGGGTTCT
TATAATCTCAGGTTTAATATGACCTGTTTATTTCTCTTCCTAGCCTACTTTGACTGCCCCGGCTG
GAGCGGATCATGCTTGAAATGGAGCACAGCTAGCAATAGTAATAAAAACAGTAAACCGTACGGAA
TTACTGCTCTTGTTGCTCCCTGGCTCTTTTTGGCTCTACACATTA
Right flanking sequence: Indices 1128950 -- 1129449
TACTCGCTGGGCAAGAGGAAATGGATGTGACTTTTAACTATACTAGATAGATATGTGTTTCTTTC
TTGGCATAGGTAATAGTACCAGGGCATTTGGTCTTTGCATTTCTTGTCACTAAGCAAAATAAAAT
AGGTATTCCCTTCTTTCTCTTCATCCATTTGAAATCAAAAGCAACAAACCGCAATTTCTGGCTCA
GAGGCATTACAAAGGCAGTTGCAACAGCTATTCCACCTACACGACTCGGGTCTGGACCAAGCATT
TATTGATGCACTCCCCGTGTTCCTATACAAGGAGATTTTGGGGCCAAAGGAACCGTTTGACTGTG
CCGTGTGTCTCTGCGAGTTCTCTGACGAAGATAAATTGAGACTCTTACCCCCATGCATTTCATTG
AAATTGCATTGACACGTGGTTGCTCTCGAACTCTACATGCCCCCTTTGTAGAGGTGCTCTCTTCC
GGTCTGACCACCCAGTATTTTAATTTAAAGATTTGAGGTTGTCAT
Found at i:1128950 original size:19 final size:19
Alignment explanation
Indices: 1128898--1128957 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
1128888 GTAGTGTAGA
**
1128898 GCTCGTGCCGTAGTGTA-GA
1 GCTCGTGCCGTAGT-TACTC
*
1128917 GCTCATGCCGTAGTTACTC
1 GCTCGTGCCGTAGTTACTC
1128936 GCTCGTGCCGTAGTTACTC
1 GCTCGTGCCGTAGTTACTC
1128955 GCT
1 GCT
1128958 GGGCAAGAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
18 2 0.06
19 34 0.94
ACGTcount: A:0.13, C:0.28, G:0.28, T:0.30
Consensus pattern (19 bp):
GCTCGTGCCGTAGTTACTC
Left flanking sequence: Indices 1128398 -- 1128897
CTTCGTTTTGGATGAAGGCAAGGATATCGCTTAGTCTCATTTCCCAAGTTAGATATATTCGAATG
CAAAAGCTAGATAGACAAGAGGAAAATAGAGATTATTTGGTGACGGAATTCTAGAACTTAATTAG
CCAGTTATCTTAGCTTAGATCGATACACTTGTTCGGCCATTTTAGTTTCACAAGTCTAAGGATAA
GCCTCGTCGTTATTTGGTTAGTGAAACAGTTCCTTTGCTCTACTTTTATCCTTTCTTGAATAGGA
ACTTAGGCGGTTGGATCCCGAGTCTTATCTTTGTCACTTACTTGTTTGGGGTTCTTATAATCTCA
GGTTTAATATGACCTGTTTATTTCTCTTCCTAGCCTACTTTGACTGCCCCGGCTGGAGCGGATCA
TGCTTGAAATGGAGCACAGCTAGCAATAGTAATAAAAACAGTAAACCGTACGGAATTACTGCTCT
TGTTGCTCCCTGGCTCTTTTTGGCTCTACACATTAGTAGTGTAGA
Right flanking sequence: Indices 1128958 -- 1129457
GGGCAAGAGGAAATGGATGTGACTTTTAACTATACTAGATAGATATGTGTTTCTTTCTTGGCATA
GGTAATAGTACCAGGGCATTTGGTCTTTGCATTTCTTGTCACTAAGCAAAATAAAATAGGTATTC
CCTTCTTTCTCTTCATCCATTTGAAATCAAAAGCAACAAACCGCAATTTCTGGCTCAGAGGCATT
ACAAAGGCAGTTGCAACAGCTATTCCACCTACACGACTCGGGTCTGGACCAAGCATTTATTGATG
CACTCCCCGTGTTCCTATACAAGGAGATTTTGGGGCCAAAGGAACCGTTTGACTGTGCCGTGTGT
CTCTGCGAGTTCTCTGACGAAGATAAATTGAGACTCTTACCCCCATGCATTTCATTGAAATTGCA
TTGACACGTGGTTGCTCTCGAACTCTACATGCCCCCTTTGTAGAGGTGCTCTCTTCCGGTCTGAC
CACCCAGTATTTTAATTTAAAGATTTGAGGTTGTCATGTTGTTGA
Found at i:1138414 original size:18 final size:18
Alignment explanation
Indices: 1138391--1138426 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1138381 GGGCCAAAAC
1138391 TCTCCCCTAATGACTAAA
1 TCTCCCCTAATGACTAAA
1138409 TCTCCCCTAATGACTAAA
1 TCTCCCCTAATGACTAAA
1138427 GATAATCAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.06, T:0.28
Consensus pattern (18 bp):
TCTCCCCTAATGACTAAA
Left flanking sequence: Indices 1137891 -- 1138390
GCTATATTAGCCCGAAGCGCTATATTACCTTCTATTATATTAGTGGAGGGGTGGGCCCAAAAGAC
TAGTCCGAACGGTACTACGCCCCGCATGTTGTTTCGGTGAAAGATATCTCGTTCCCGCTCAAAGG
AAAGTAGGAATGTGAAACCCAATCTTGACATCGGCGGTACGATAACCCATCTGCCGACGAGCAGT
CGCTACTAAGGACTCGAGGCCATGTGACAGATTTCTCTCCTGTCTATTCACCTTCTTTAGTCCTA
TCTATCCTTTCTTTTCATAGAGCATAGCTGGAGGATTACTAAAGGAAGCTCTGGGATGAGGTCTC
AAAATGGGGGTTCTCAAACCGTACTGCCCCGCTTCTTTCACTATGCATTTGGAGTTGAGTGAAAG
GAGATAAAGAGCTCGTACCTTATTTGATCTTTTCATTCGTACTCGTACCTTACGATACCGGCTTA
CTTCAGAAGAAAGTTCGAAGGAAGGCGAAGAAAGCGGGCCAAAAC
Right flanking sequence: Indices 1138427 -- 1138926
GATAATCAGGGTGTACGAGAACAATGACTTATTAAATCAATGCCTGAGTAGAAGCTTTTCAAGAC
CCAGTATACCCAACAAGATAAAGAGCGAGAGTCACAGCGAAGTGTAGAATGTTGAAGAAGTGAGT
GCATGTGCTACCGCTCCTTCAATGCTAAGTAAGTGGTGAAAGAAGGTCCTTCAGCTGGCTGGCTG
ATGTAATATTTTGCGTGCAGGCCGGATAGGAAATAAAATAAAAGGCTGAAAGAAGACGAAACTCT
CTCTCGAACTCATGGAGTACGATCCTCACCTTGGATGAAGTTTTGGTTCGGTATACCGCCTCATT
GGAATATACGAAATGAGATAAAAGAAGCAAACACAACACAAAAGTACATTTATTGAACTTATAGT
AGAACTCTTTTTTCAAGGGTAAGGGTGCTTGCATATCTTATGGGGTAGGAGAGCTACTGGCAGGT
ACCGACAACTGCTATGGACTTTCTCTGCATCTGGTTTTTAGAGCT
Found at i:1139668 original size:18 final size:18
Alignment explanation
Indices: 1139645--1139691 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
1139635 ACATGCCTAC
1139645 GTGTAGAGCTC-TAAAGTA
1 GTGTAGAGCTCAT-AAGTA
*
1139663 GTGTAGAGCTCATTAGTA
1 GTGTAGAGCTCATAAGTA
1139681 GTGTAGAGCTC
1 GTGTAGAGCTC
1139692 GTGCCTACGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 26 0.96
19 1 0.04
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (18 bp):
GTGTAGAGCTCATAAGTA
Left flanking sequence: Indices 1139145 -- 1139644
AGATATGTCCAAATAAACTGAAAAAGTAACCAAAAAAGGGAACCGAGGCTGCTTCTTGGTTCTGA
CAATTTGATTGAATAATATCGCACCTTATTTTGTGGTTGAGGCTTCTAGCTAGATATATGGGGCC
TTTTCTTCTCAGTCAACAGGAGCATCTAGAAGGTCATCTTCATATCGCGCGAAAACACTTCAAGT
CAAAAAATCTTATTTATATGATATGTTGAAATATTTTATATACAATCCTTTCTCTTGTTGCATAC
TGTGATTTTCCTACTGGACTTTGTGCTTTCTCTGAACCTTAGCTGCACCAGCACCATAAATAAGG
GTAATGAACTGGTACATGAGGGGTTCAGGTATCTGTGCCAACGGTACACAGTGGTTTTGAAAGGC
ATTGATTCTAAGCTTTCAGATAAATAGTTGATACTGATGTAGTCTTCTTTCCTTGTGTAAATTGT
TGTCCTAAGTCTTTCAAAGCTCTTTTTGGCTCTACACATGCCTAC
Right flanking sequence: Indices 1139692 -- 1140191
GTGCCTACGTTACGAGCTCATTAGTAGTTACTCGCTCGTGCCTACGTTACTCGCTGGGTAAGTCA
CAAGTAGACTTTAAAGGAATAGAAAGACGGGATGGCAAGTATAGGTAATTATAGTCAAGAAAGTA
GAAGGCTGATTTAGTCAAAACCTACAAGAAGCAATGGTATTTCAGGTTGGATATATGCAAGAAAA
CAAGTAGTAGAAATGCTAGGGTATATGGAAGGTAGACAAGATATGCCTATTGAAAAGTTACTTGG
TAAAGTAATGTAAGGGATAAGTCAAGTAAGAAGAGAAAGATAGTCAAAGTTGACATCTTGAAATC
GACTCGCATGGGCCAAGTAAGTGCTTATAAAAGGAGGCTCAAGCAGAAAAAAATAATGAAAACTA
GAGGCATGTTGGATCATCTATAGTCCTAGAACAGACCTGGAAAATGAATCCGAGCGAGCGACAAT
GCCTTTATAAGCAAGCCTCTCTTTTTAGACTAGTCAACCTATGCA
Found at i:1139710 original size:19 final size:19
Alignment explanation
Indices: 1139686--1139741 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
1139676 TAGTAGTGTA
1139686 GAGCTCGTGCCTACGTTAC
1 GAGCTCGTGCCTACGTTAC
* ***
1139705 GAGCTCATTAGTA-GTTAC
1 GAGCTCGTGCCTACGTTAC
**
1139723 TCGCTCGTGCCTACGTTAC
1 GAGCTCGTGCCTACGTTAC
1139742 TCGCTGGGTA
Statistics
Matches: 26, Mismatches: 10, Indels: 2
0.68 0.26 0.05
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (19 bp):
GAGCTCGTGCCTACGTTAC
Left flanking sequence: Indices 1139186 -- 1139685
ACCGAGGCTGCTTCTTGGTTCTGACAATTTGATTGAATAATATCGCACCTTATTTTGTGGTTGAG
GCTTCTAGCTAGATATATGGGGCCTTTTCTTCTCAGTCAACAGGAGCATCTAGAAGGTCATCTTC
ATATCGCGCGAAAACACTTCAAGTCAAAAAATCTTATTTATATGATATGTTGAAATATTTTATAT
ACAATCCTTTCTCTTGTTGCATACTGTGATTTTCCTACTGGACTTTGTGCTTTCTCTGAACCTTA
GCTGCACCAGCACCATAAATAAGGGTAATGAACTGGTACATGAGGGGTTCAGGTATCTGTGCCAA
CGGTACACAGTGGTTTTGAAAGGCATTGATTCTAAGCTTTCAGATAAATAGTTGATACTGATGTA
GTCTTCTTTCCTTGTGTAAATTGTTGTCCTAAGTCTTTCAAAGCTCTTTTTGGCTCTACACATGC
CTACGTGTAGAGCTCTAAAGTAGTGTAGAGCTCATTAGTAGTGTA
Right flanking sequence: Indices 1139742 -- 1140241
TCGCTGGGTAAGTCACAAGTAGACTTTAAAGGAATAGAAAGACGGGATGGCAAGTATAGGTAATT
ATAGTCAAGAAAGTAGAAGGCTGATTTAGTCAAAACCTACAAGAAGCAATGGTATTTCAGGTTGG
ATATATGCAAGAAAACAAGTAGTAGAAATGCTAGGGTATATGGAAGGTAGACAAGATATGCCTAT
TGAAAAGTTACTTGGTAAAGTAATGTAAGGGATAAGTCAAGTAAGAAGAGAAAGATAGTCAAAGT
TGACATCTTGAAATCGACTCGCATGGGCCAAGTAAGTGCTTATAAAAGGAGGCTCAAGCAGAAAA
AAATAATGAAAACTAGAGGCATGTTGGATCATCTATAGTCCTAGAACAGACCTGGAAAATGAATC
CGAGCGAGCGACAATGCCTTTATAAGCAAGCCTCTCTTTTTAGACTAGTCAACCTATGCACGCCT
TTTCCAATATGCTAGAGCAGGCGATTAATTACATTTATTTTGAAG
Found at i:1139715 original size:37 final size:37
Alignment explanation
Indices: 1139668--1139741 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
1139658 AAGTAGTGTA
1139668 GAGCTCATTAGTAGTGTA-GAGCTCGTGCCTACGTTAC
1 GAGCTCATTAGTAGT-TACGAGCTCGTGCCTACGTTAC
**
1139705 GAGCTCATTAGTAGTTACTCGCTCGTGCCTACGTTAC
1 GAGCTCATTAGTAGTTACGAGCTCGTGCCTACGTTAC
1139742 TCGCTGGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 2 0.06
37 32 0.94
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (37 bp):
GAGCTCATTAGTAGTTACGAGCTCGTGCCTACGTTAC
Left flanking sequence: Indices 1139168 -- 1139667
AAGTAACCAAAAAAGGGAACCGAGGCTGCTTCTTGGTTCTGACAATTTGATTGAATAATATCGCA
CCTTATTTTGTGGTTGAGGCTTCTAGCTAGATATATGGGGCCTTTTCTTCTCAGTCAACAGGAGC
ATCTAGAAGGTCATCTTCATATCGCGCGAAAACACTTCAAGTCAAAAAATCTTATTTATATGATA
TGTTGAAATATTTTATATACAATCCTTTCTCTTGTTGCATACTGTGATTTTCCTACTGGACTTTG
TGCTTTCTCTGAACCTTAGCTGCACCAGCACCATAAATAAGGGTAATGAACTGGTACATGAGGGG
TTCAGGTATCTGTGCCAACGGTACACAGTGGTTTTGAAAGGCATTGATTCTAAGCTTTCAGATAA
ATAGTTGATACTGATGTAGTCTTCTTTCCTTGTGTAAATTGTTGTCCTAAGTCTTTCAAAGCTCT
TTTTGGCTCTACACATGCCTACGTGTAGAGCTCTAAAGTAGTGTA
Right flanking sequence: Indices 1139742 -- 1140241
TCGCTGGGTAAGTCACAAGTAGACTTTAAAGGAATAGAAAGACGGGATGGCAAGTATAGGTAATT
ATAGTCAAGAAAGTAGAAGGCTGATTTAGTCAAAACCTACAAGAAGCAATGGTATTTCAGGTTGG
ATATATGCAAGAAAACAAGTAGTAGAAATGCTAGGGTATATGGAAGGTAGACAAGATATGCCTAT
TGAAAAGTTACTTGGTAAAGTAATGTAAGGGATAAGTCAAGTAAGAAGAGAAAGATAGTCAAAGT
TGACATCTTGAAATCGACTCGCATGGGCCAAGTAAGTGCTTATAAAAGGAGGCTCAAGCAGAAAA
AAATAATGAAAACTAGAGGCATGTTGGATCATCTATAGTCCTAGAACAGACCTGGAAAATGAATC
CGAGCGAGCGACAATGCCTTTATAAGCAAGCCTCTCTTTTTAGACTAGTCAACCTATGCACGCCT
TTTCCAATATGCTAGAGCAGGCGATTAATTACATTTATTTTGAAG
Found at i:1159399 original size:18 final size:19
Alignment explanation
Indices: 1159374--1159427 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 19
1159364 CGTAAGTGGA
**
1159374 ACGAGCGAGTAACTACTTT
1 ACGAGCGAGTAACTACTGC
*
1159393 A-GAGCGAGTAACTACGGC
1 ACGAGCGAGTAACTACTGC
1159411 ACGAGCGAGTAACTACT
1 ACGAGCGAGTAACTACT
1159428 AATGAGCTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (19 bp):
ACGAGCGAGTAACTACTGC
Left flanking sequence: Indices 1158874 -- 1159373
GAGAGGGATAAAGCTAAAGGATCCGCTGTTTAATAAAATTGATGAGATATGATCAAAGAAGATTC
GTACATGTGGATCGAAATTATATATTCATAGATATTCAAAAGATTGCATTCTTTTGCCAGAAACC
CTATCCATCCTTCCCTACAAAAGGACATGCCGTCCTCATCGTTAGACATCAGGAAAAAAGAGATA
AGAAAACCAAAAATGAGCGGTGAAATACCATACCATGAGTATTTGTCGAATAGTAAGAGCAATTG
TCATGAGAGAGAGAACCACAAATAAAACAAAAGAAGTGAAAAAAAACTATTAATGAGTACAGGAT
TCATCTATGGTGATCTACTTAGTGAGGATTACTACATAGTATCTTATGTCAGCAATAGTGGAGAT
ATGATGGATGGAACTAGGAAACAGATTAAAAACTCAGCTGTACGAATATCAGCAGCGATTACAGC
TTCTGCAAGAATATATATGTACCCAGCGAGTGTAACGTAAGTGGA
Right flanking sequence: Indices 1159428 -- 1159927
AATGAGCTCTACACTACTAATGTGTAGAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTG
TAGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAAAGAGCAGAAAGACGAGCCAAA
AGAGCAAAAAGAAGAGCCAAAAAGAGCAAAAAGAGCGAGCAGAAAGACGAGCCAGAGAGCGAGCG
GAAGACTGTCACTGAGCTATTTCTTGACTTTGCCTATTACTGATAGATATTCTGAAACTGAGTAA
GAATGCCTAGCCCCAAGAAAAGATCTCCTGTACCTAGTTATTGCTACTCATGATACCGGTCACTT
CTGATATCTATATAATGAGGTATAAGTAGAAGTAGAAGAATAAAAGAAGGGGTATTTCTTAGCTG
GGCACCTAGGTAACGAGAGAGAGAGTAACCGTACGGGAAAAAGAAGTTTGGACACCGTTGAAATG
GCGTAACATAAATAACATGGTTTATTCTTTATTTATGGTTGGTAT
Found at i:1159457 original size:23 final size:22
Alignment explanation
Indices: 1159431--1159498 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 22
1159421 AACTACTAAT
1159431 GAGCTCTACACTACTAATGTGTA
1 GAGCTCTACACTACTAA-GTGTA
**
1159454 GAGCGAGTA-ACTACTAA---T-
1 GAGC-TCTACACTACTAAGTGTA
1159472 GAGCTCTACACTACTAACGTGTA
1 GAGCTCTACACTACTAA-GTGTA
1159495 GAGC
1 GAGC
1159499 AGAAAGACGA
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
17 2 0.06
18 12 0.35
19 1 0.03
22 1 0.03
23 16 0.47
24 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (22 bp):
GAGCTCTACACTACTAAGTGTA
Left flanking sequence: Indices 1158931 -- 1159430
GAAGATTCGTACATGTGGATCGAAATTATATATTCATAGATATTCAAAAGATTGCATTCTTTTGC
CAGAAACCCTATCCATCCTTCCCTACAAAAGGACATGCCGTCCTCATCGTTAGACATCAGGAAAA
AAGAGATAAGAAAACCAAAAATGAGCGGTGAAATACCATACCATGAGTATTTGTCGAATAGTAAG
AGCAATTGTCATGAGAGAGAGAACCACAAATAAAACAAAAGAAGTGAAAAAAAACTATTAATGAG
TACAGGATTCATCTATGGTGATCTACTTAGTGAGGATTACTACATAGTATCTTATGTCAGCAATA
GTGGAGATATGATGGATGGAACTAGGAAACAGATTAAAAACTCAGCTGTACGAATATCAGCAGCG
ATTACAGCTTCTGCAAGAATATATATGTACCCAGCGAGTGTAACGTAAGTGGAACGAGCGAGTAA
CTACTTTAGAGCGAGTAACTACGGCACGAGCGAGTAACTACTAAT
Right flanking sequence: Indices 1159499 -- 1159998
AGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAAAGAGCAGAAAGACGAGCCAAAAGAGCA
AAAAGAAGAGCCAAAAAGAGCAAAAAGAGCGAGCAGAAAGACGAGCCAGAGAGCGAGCGGAAGAC
TGTCACTGAGCTATTTCTTGACTTTGCCTATTACTGATAGATATTCTGAAACTGAGTAAGAATGC
CTAGCCCCAAGAAAAGATCTCCTGTACCTAGTTATTGCTACTCATGATACCGGTCACTTCTGATA
TCTATATAATGAGGTATAAGTAGAAGTAGAAGAATAAAAGAAGGGGTATTTCTTAGCTGGGCACC
TAGGTAACGAGAGAGAGAGTAACCGTACGGGAAAAAGAAGTTTGGACACCGTTGAAATGGCGTAA
CATAAATAACATGGTTTATTCTTTATTTATGGTTGGTATGAGAGAAAAGAAAGAACAGGGGTGAT
ATGGCAGTCAATACCCTAAGCAGCATAGGAGTTCGGTCGAAGCTC
Found at i:1159464 original size:41 final size:41
Alignment explanation
Indices: 1159413--1159498 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
1159403 ACTACGGCAC
*
1159413 GAGCGAGTAACTACTAATGAGCTCTACACTACTAATGTGTA
1 GAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGTA
1159454 GAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGTA
1 GAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGTA
1159495 GAGC
1 GAGC
1159499 AGAAAGACGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (41 bp):
GAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGTA
Left flanking sequence: Indices 1158913 -- 1159412
TGATGAGATATGATCAAAGAAGATTCGTACATGTGGATCGAAATTATATATTCATAGATATTCAA
AAGATTGCATTCTTTTGCCAGAAACCCTATCCATCCTTCCCTACAAAAGGACATGCCGTCCTCAT
CGTTAGACATCAGGAAAAAAGAGATAAGAAAACCAAAAATGAGCGGTGAAATACCATACCATGAG
TATTTGTCGAATAGTAAGAGCAATTGTCATGAGAGAGAGAACCACAAATAAAACAAAAGAAGTGA
AAAAAAACTATTAATGAGTACAGGATTCATCTATGGTGATCTACTTAGTGAGGATTACTACATAG
TATCTTATGTCAGCAATAGTGGAGATATGATGGATGGAACTAGGAAACAGATTAAAAACTCAGCT
GTACGAATATCAGCAGCGATTACAGCTTCTGCAAGAATATATATGTACCCAGCGAGTGTAACGTA
AGTGGAACGAGCGAGTAACTACTTTAGAGCGAGTAACTACGGCAC
Right flanking sequence: Indices 1159499 -- 1159998
AGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAAAGAGCAGAAAGACGAGCCAAAAGAGCA
AAAAGAAGAGCCAAAAAGAGCAAAAAGAGCGAGCAGAAAGACGAGCCAGAGAGCGAGCGGAAGAC
TGTCACTGAGCTATTTCTTGACTTTGCCTATTACTGATAGATATTCTGAAACTGAGTAAGAATGC
CTAGCCCCAAGAAAAGATCTCCTGTACCTAGTTATTGCTACTCATGATACCGGTCACTTCTGATA
TCTATATAATGAGGTATAAGTAGAAGTAGAAGAATAAAAGAAGGGGTATTTCTTAGCTGGGCACC
TAGGTAACGAGAGAGAGAGTAACCGTACGGGAAAAAGAAGTTTGGACACCGTTGAAATGGCGTAA
CATAAATAACATGGTTTATTCTTTATTTATGGTTGGTATGAGAGAAAAGAAAGAACAGGGGTGAT
ATGGCAGTCAATACCCTAAGCAGCATAGGAGTTCGGTCGAAGCTC
Found at i:1159518 original size:21 final size:22
Alignment explanation
Indices: 1159494--1159597 Score: 149
Period size: 21 Copynumber: 4.8 Consensus size: 22
1159484 ACTAACGTGT
*
1159494 AGAGCAGAAAGACGAGCC-AAA
1 AGAGCAAAAAGACGAGCCAAAA
*
1159515 AGAGCAAAAAGAAGAGCCAAAA
1 AGAGCAAAAAGACGAGCCAAAA
*
1159537 AGAGCAGAAAGACGAGCC-AAA
1 AGAGCAAAAAGACGAGCCAAAA
*
1159558 AGAGCAAAAAGAAGAGCCAAAA
1 AGAGCAAAAAGACGAGCCAAAA
1159580 AGAGCAAAAAGAGCGAGC
1 AGAGCAAAAAGA-CGAGC
1159598 AGAAAGACGA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
21 35 0.48
22 34 0.47
23 4 0.05
ACGTcount: A:0.57, C:0.16, G:0.27, T:0.00
Consensus pattern (22 bp):
AGAGCAAAAAGACGAGCCAAAA
Left flanking sequence: Indices 1158994 -- 1159493
GCCAGAAACCCTATCCATCCTTCCCTACAAAAGGACATGCCGTCCTCATCGTTAGACATCAGGAA
AAAAGAGATAAGAAAACCAAAAATGAGCGGTGAAATACCATACCATGAGTATTTGTCGAATAGTA
AGAGCAATTGTCATGAGAGAGAGAACCACAAATAAAACAAAAGAAGTGAAAAAAAACTATTAATG
AGTACAGGATTCATCTATGGTGATCTACTTAGTGAGGATTACTACATAGTATCTTATGTCAGCAA
TAGTGGAGATATGATGGATGGAACTAGGAAACAGATTAAAAACTCAGCTGTACGAATATCAGCAG
CGATTACAGCTTCTGCAAGAATATATATGTACCCAGCGAGTGTAACGTAAGTGGAACGAGCGAGT
AACTACTTTAGAGCGAGTAACTACGGCACGAGCGAGTAACTACTAATGAGCTCTACACTACTAAT
GTGTAGAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGT
Right flanking sequence: Indices 1159598 -- 1160097
AGAAAGACGAGCCAGAGAGCGAGCGGAAGACTGTCACTGAGCTATTTCTTGACTTTGCCTATTAC
TGATAGATATTCTGAAACTGAGTAAGAATGCCTAGCCCCAAGAAAAGATCTCCTGTACCTAGTTA
TTGCTACTCATGATACCGGTCACTTCTGATATCTATATAATGAGGTATAAGTAGAAGTAGAAGAA
TAAAAGAAGGGGTATTTCTTAGCTGGGCACCTAGGTAACGAGAGAGAGAGTAACCGTACGGGAAA
AAGAAGTTTGGACACCGTTGAAATGGCGTAACATAAATAACATGGTTTATTCTTTATTTATGGTT
GGTATGAGAGAAAAGAAAGAACAGGGGTGATATGGCAGTCAATACCCTAAGCAGCATAGGAGTTC
GGTCGAAGCTCAGCCGATTAGAGTGTCTGGTTGCAAGGGGGTCCATAGGCCTAAACCCAGGGATT
GTTCGAATCAGTGCCGGGTACCCGAAGAGAATAGAGAGAAAGAGT
Found at i:1159555 original size:43 final size:43
Alignment explanation
Indices: 1159494--1159597 Score: 190
Period size: 43 Copynumber: 2.4 Consensus size: 43
1159484 ACTAACGTGT
1159494 AGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAA
1 AGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAA
1159537 AGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAA
1 AGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAA
*
1159580 AGAGCAAAAAGAGCGAGC
1 AGAGCAGAAAGA-CGAGC
1159598 AGAAAGACGA
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
43 54 0.92
44 5 0.08
ACGTcount: A:0.57, C:0.16, G:0.27, T:0.00
Consensus pattern (43 bp):
AGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAA
Left flanking sequence: Indices 1158994 -- 1159493
GCCAGAAACCCTATCCATCCTTCCCTACAAAAGGACATGCCGTCCTCATCGTTAGACATCAGGAA
AAAAGAGATAAGAAAACCAAAAATGAGCGGTGAAATACCATACCATGAGTATTTGTCGAATAGTA
AGAGCAATTGTCATGAGAGAGAGAACCACAAATAAAACAAAAGAAGTGAAAAAAAACTATTAATG
AGTACAGGATTCATCTATGGTGATCTACTTAGTGAGGATTACTACATAGTATCTTATGTCAGCAA
TAGTGGAGATATGATGGATGGAACTAGGAAACAGATTAAAAACTCAGCTGTACGAATATCAGCAG
CGATTACAGCTTCTGCAAGAATATATATGTACCCAGCGAGTGTAACGTAAGTGGAACGAGCGAGT
AACTACTTTAGAGCGAGTAACTACGGCACGAGCGAGTAACTACTAATGAGCTCTACACTACTAAT
GTGTAGAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGT
Right flanking sequence: Indices 1159598 -- 1160097
AGAAAGACGAGCCAGAGAGCGAGCGGAAGACTGTCACTGAGCTATTTCTTGACTTTGCCTATTAC
TGATAGATATTCTGAAACTGAGTAAGAATGCCTAGCCCCAAGAAAAGATCTCCTGTACCTAGTTA
TTGCTACTCATGATACCGGTCACTTCTGATATCTATATAATGAGGTATAAGTAGAAGTAGAAGAA
TAAAAGAAGGGGTATTTCTTAGCTGGGCACCTAGGTAACGAGAGAGAGAGTAACCGTACGGGAAA
AAGAAGTTTGGACACCGTTGAAATGGCGTAACATAAATAACATGGTTTATTCTTTATTTATGGTT
GGTATGAGAGAAAAGAAAGAACAGGGGTGATATGGCAGTCAATACCCTAAGCAGCATAGGAGTTC
GGTCGAAGCTCAGCCGATTAGAGTGTCTGGTTGCAAGGGGGTCCATAGGCCTAAACCCAGGGATT
GTTCGAATCAGTGCCGGGTACCCGAAGAGAATAGAGAGAAAGAGT
Found at i:1159597 original size:13 final size:12
Alignment explanation
Indices: 1159495--1159609 Score: 70
Period size: 12 Copynumber: 10.3 Consensus size: 12
1159485 CTAACGTGTA
*
1159495 GAGCAGAAAGAC
1 GAGCAAAAAGAC
*
1159507 GAGC-CAAA-A-
1 GAGCAAAAAGAC
*
1159516 GAGCAAAAAGAA
1 GAGCAAAAAGAC
*
1159528 GAGCCAAAA-A-
1 GAGCAAAAAGAC
*
1159538 GAGCAGAAAGAC
1 GAGCAAAAAGAC
*
1159550 GAGC-CAAA-A-
1 GAGCAAAAAGAC
*
1159559 GAGCAAAAAGAA
1 GAGCAAAAAGAC
*
1159571 GAGCCAAAA-A-
1 GAGCAAAAAGAC
1159581 GAGCAAAAAGAGC
1 GAGCAAAAAGA-C
*
1159594 GAGCAGAAAGAC
1 GAGCAAAAAGAC
1159606 GAGC
1 GAGC
1159610 CAGAGAGCGA
Statistics
Matches: 82, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
9 8 0.10
10 23 0.28
11 12 0.15
12 29 0.35
13 10 0.12
ACGTcount: A:0.56, C:0.17, G:0.28, T:0.00
Consensus pattern (12 bp):
GAGCAAAAAGAC
Left flanking sequence: Indices 1158995 -- 1159494
CCAGAAACCCTATCCATCCTTCCCTACAAAAGGACATGCCGTCCTCATCGTTAGACATCAGGAAA
AAAGAGATAAGAAAACCAAAAATGAGCGGTGAAATACCATACCATGAGTATTTGTCGAATAGTAA
GAGCAATTGTCATGAGAGAGAGAACCACAAATAAAACAAAAGAAGTGAAAAAAAACTATTAATGA
GTACAGGATTCATCTATGGTGATCTACTTAGTGAGGATTACTACATAGTATCTTATGTCAGCAAT
AGTGGAGATATGATGGATGGAACTAGGAAACAGATTAAAAACTCAGCTGTACGAATATCAGCAGC
GATTACAGCTTCTGCAAGAATATATATGTACCCAGCGAGTGTAACGTAAGTGGAACGAGCGAGTA
ACTACTTTAGAGCGAGTAACTACGGCACGAGCGAGTAACTACTAATGAGCTCTACACTACTAATG
TGTAGAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGTA
Right flanking sequence: Indices 1159610 -- 1160109
CAGAGAGCGAGCGGAAGACTGTCACTGAGCTATTTCTTGACTTTGCCTATTACTGATAGATATTC
TGAAACTGAGTAAGAATGCCTAGCCCCAAGAAAAGATCTCCTGTACCTAGTTATTGCTACTCATG
ATACCGGTCACTTCTGATATCTATATAATGAGGTATAAGTAGAAGTAGAAGAATAAAAGAAGGGG
TATTTCTTAGCTGGGCACCTAGGTAACGAGAGAGAGAGTAACCGTACGGGAAAAAGAAGTTTGGA
CACCGTTGAAATGGCGTAACATAAATAACATGGTTTATTCTTTATTTATGGTTGGTATGAGAGAA
AAGAAAGAACAGGGGTGATATGGCAGTCAATACCCTAAGCAGCATAGGAGTTCGGTCGAAGCTCA
GCCGATTAGAGTGTCTGGTTGCAAGGGGGTCCATAGGCCTAAACCCAGGGATTGTTCGAATCAGT
GCCGGGTACCCGAAGAGAATAGAGAGAAAGAGTAGATTAAGCGAA
Found at i:1162310 original size:21 final size:21
Alignment explanation
Indices: 1162286--1162326 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1162276 TCTAAATGAC
1162286 GGCTCGTTCAAT-CACTCGCTA
1 GGCTCGTTC-ATCCACTCGCTA
1162307 GGCTCGTTCATCCACTCGCT
1 GGCTCGTTCATCCACTCGCT
1162327 GGGTGTCGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.15, C:0.37, G:0.20, T:0.29
Consensus pattern (21 bp):
GGCTCGTTCATCCACTCGCTA
Left flanking sequence: Indices 1161786 -- 1162285
GCTATGAAAGAGCGGCTTAAAGTCAAGCTCTATAGGTACCAACGCTATAGGTGATCCATGCAAAT
CAAAAGGTTGTTTTCGGAACTGAAAGAAAAAAAGGTAGAAAGAGACGTTCAATCCTCATTTCTTC
CATTCTACTCCGACTTAGTCACACCATTTCTCCATTCTTCTGGCAGGAGTATGATGTATTATGGT
ATAGGTACCCAGCGCCTCGTTTCTCACATGCTCCGGTCTCAAGGCCTTAGCACGAAGGAGAAGCT
ATTAAGGTAGGTGCAGGCATCTATGCGATAGAAGAGAGTCACTGCCCAAGAAGAGCTAAGAAGTT
TGATCAATAAGTGTATAAAATGTGTTTCGTTGAGAAAGCGCTTTCAAAGCACCCTTTTAGTGTGT
CTCATCATTCTATTCTACTTAGATGTTGTGAAAAGCAGCTATCTTCGATCAAAGCAATTAGATCA
ACAACTTCTCTGAAAGAAGGAAAGAAGGGAAATCTTCTAAATGAC
Right flanking sequence: Indices 1162327 -- 1162826
GGGTGTCGCCTTCGAATTGAGTATTGAGTCTACTTTCAATTAGACTTTCGATTCAAAAAGTCGAG
TTGCCAGCCTACAATTGACTCTCTGAGCTCACGAAGTGCACAACTTGAACAAAAACATATAAGCA
TCGAACATCATCAAACAATCAAAACGGAAGCTTAACTCTCTTTCGTCTGTCGAGAAAGAAGAGAA
CAAACTAGCATTTTGAAAGACCTAAGACCTGTATCACCCAGCCTCTTTGAATTGCTTTCTTCCAG
ACAATAAATAGCTGACTCTCTCACACTTCGCTTCAGGTGCCTGCTCTTATTGCTTCCACCATGAC
TCACAATAGCAATACCCTTAGTAGTCTCCTATTAGGTAGGTAGAAGACTCTCAGTTCATAGCAGG
CTGACTCTTCCTGTCCTACTGGCTTTAGGGAGCTACATCCGCATACTACTTGCATGAGAGAACTG
ACCCAGCTGTGAGGCAATGAAGTAGGCAAAGCATCAAAGACCCAT
Found at i:1171868 original size:19 final size:22
Alignment explanation
Indices: 1171830--1171875 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 22
1171820 CCCAGCGAGT
1171830 GTAACGTAAGTGCAACGAGCGA
1 GTAACGTAAGTGCAACGAGCGA
1171852 GTAACGT-AG-GC-ACGAGCGA
1 GTAACGTAAGTGCAACGAGCGA
1171871 GTAAC
1 GTAAC
1171876 TACTAATGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.54
20 2 0.08
21 2 0.08
22 7 0.29
ACGTcount: A:0.35, C:0.20, G:0.33, T:0.13
Consensus pattern (22 bp):
GTAACGTAAGTGCAACGAGCGA
Left flanking sequence: Indices 1171330 -- 1171829
TGCATTTCGGTTCTACTCTTGGACCGAACCAAGGCTTAGGTTGTTCAGTTTTCTCTATTTACGAA
AAATTTTAATGAAACTGGTATTGCTTCTCGGGTAATTCTGGTATGTAGCTAGGGAGGGAGCCGCA
CACTTTGTCTTGGTCTAGAAATCCTATCCGGAACTATTCCTTGTAGGAGAAGAAGGTCAGAATTG
CTTTCCGCAGACTTGATTTAGTGTTTAGGTCAGCCTGAAAGTTTAAGCTCGAAGTCCATCCGTCT
TGTCTCGGAGTACCACCTTACTTACTCTTGTGGCTCCAAACCTGGAAGAAATAAATAAATAGTAC
CTACCCCAGTAAGTCAGTGAGCCAATAGTAGGTGCTGGTCGATTGTCATGCACCTTATCTTCTTA
CCAATTCCAGTAAGCCTTCTGGTCAGCTACCACATATCTGCTTAGACTCAGCTTTTTACCTGAAA
CTCAGCTTTTTCTTCTACTTATTTTAGAGCCGGTACCCAGCGAGT
Right flanking sequence: Indices 1171876 -- 1172375
TACTAATGAGCTCTACACGTAGGCATGTGTAGAGCGAGTAACTACTAATGAGCTCTACACTACTA
ACGTGTAGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAAAGAGCCAGGGAGCGAG
CGGAAGTCTCGGTGCTCTTTGCTTCTTCTTTCTTCGTTGCGTCTTTGCTCTCCAGGAAAGAAATT
TGTGCTGATCTCGGAGTTTTCTTTGCTTGTTGTGATAAGTGATAATAAGAATGACTAGAAAGAAT
TGAGGAAGAGGGACTTGCAGTGTTGGTTCTGAGAGAGGGAAGGCGGGGAAGATTTACACGGAAGC
ATACTCACCAAGTCTCCAACCTCCGCGGTTTCATAATTTAGCCAACGTCTTTTCTTATTTTTTTT
TATACTTCATTCAGTATAAGTAATTAATGGTCAAGATATACATTTATCATATGAATTTTTTATAA
AAATACTCAGAATTTAGTATAAACACCACAACACTAACTAGAAAT
Found at i:1171896 original size:37 final size:38
Alignment explanation
Indices: 1171855--1171935 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 38
1171845 CGAGCGAGTA
*
1171855 ACGTAGGCA-CGAGCGAGTAACTACTAATGAGCTCTAC
1 ACGTAGGCATAGAGCGAGTAACTACTAATGAGCTCTAC
1171892 ACGTAGGCATGTGTAGAGCGAGTAACTACTAATGAGCTCTAC
1 ACGTAGGCA----TAGAGCGAGTAACTACTAATGAGCTCTAC
1171934 AC
1 AC
1171936 TACTAACGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
37 9 0.24
42 29 0.76
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (38 bp):
ACGTAGGCATAGAGCGAGTAACTACTAATGAGCTCTAC
Left flanking sequence: Indices 1171355 -- 1171854
GAACCAAGGCTTAGGTTGTTCAGTTTTCTCTATTTACGAAAAATTTTAATGAAACTGGTATTGCT
TCTCGGGTAATTCTGGTATGTAGCTAGGGAGGGAGCCGCACACTTTGTCTTGGTCTAGAAATCCT
ATCCGGAACTATTCCTTGTAGGAGAAGAAGGTCAGAATTGCTTTCCGCAGACTTGATTTAGTGTT
TAGGTCAGCCTGAAAGTTTAAGCTCGAAGTCCATCCGTCTTGTCTCGGAGTACCACCTTACTTAC
TCTTGTGGCTCCAAACCTGGAAGAAATAAATAAATAGTACCTACCCCAGTAAGTCAGTGAGCCAA
TAGTAGGTGCTGGTCGATTGTCATGCACCTTATCTTCTTACCAATTCCAGTAAGCCTTCTGGTCA
GCTACCACATATCTGCTTAGACTCAGCTTTTTACCTGAAACTCAGCTTTTTCTTCTACTTATTTT
AGAGCCGGTACCCAGCGAGTGTAACGTAAGTGCAACGAGCGAGTA
Right flanking sequence: Indices 1171936 -- 1172435
TACTAACGTGTAGAGCAGAAAGACGAGCCAAAAGAGCAAAAAGAAGAGCCAAAAAGAGCCAGGGA
GCGAGCGGAAGTCTCGGTGCTCTTTGCTTCTTCTTTCTTCGTTGCGTCTTTGCTCTCCAGGAAAG
AAATTTGTGCTGATCTCGGAGTTTTCTTTGCTTGTTGTGATAAGTGATAATAAGAATGACTAGAA
AGAATTGAGGAAGAGGGACTTGCAGTGTTGGTTCTGAGAGAGGGAAGGCGGGGAAGATTTACACG
GAAGCATACTCACCAAGTCTCCAACCTCCGCGGTTTCATAATTTAGCCAACGTCTTTTCTTATTT
TTTTTTATACTTCATTCAGTATAAGTAATTAATGGTCAAGATATACATTTATCATATGAATTTTT
TATAAAAATACTCAGAATTTAGTATAAACACCACAACACTAACTAGAAATAAAAATAAGTTCAAT
TTGAAACACCGAACTATTTCAGTTTCAATATAAGACTATACAAGT
Found at i:1171971 original size:21 final size:22
Alignment explanation
Indices: 1171947--1171994 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
1171937 ACTAACGTGT
* *
1171947 AGAGCAGAAAGACGAGCC-AAA
1 AGAGCAAAAAGAAGAGCCAAAA
1171968 AGAGCAAAAAGAAGAGCCAAAA
1 AGAGCAAAAAGAAGAGCCAAAA
1171990 AGAGC
1 AGAGC
1171995 CAGGGAGCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.56, C:0.17, G:0.27, T:0.00
Consensus pattern (22 bp):
AGAGCAAAAAGAAGAGCCAAAA
Left flanking sequence: Indices 1171447 -- 1171946
GGAGGGAGCCGCACACTTTGTCTTGGTCTAGAAATCCTATCCGGAACTATTCCTTGTAGGAGAAG
AAGGTCAGAATTGCTTTCCGCAGACTTGATTTAGTGTTTAGGTCAGCCTGAAAGTTTAAGCTCGA
AGTCCATCCGTCTTGTCTCGGAGTACCACCTTACTTACTCTTGTGGCTCCAAACCTGGAAGAAAT
AAATAAATAGTACCTACCCCAGTAAGTCAGTGAGCCAATAGTAGGTGCTGGTCGATTGTCATGCA
CCTTATCTTCTTACCAATTCCAGTAAGCCTTCTGGTCAGCTACCACATATCTGCTTAGACTCAGC
TTTTTACCTGAAACTCAGCTTTTTCTTCTACTTATTTTAGAGCCGGTACCCAGCGAGTGTAACGT
AAGTGCAACGAGCGAGTAACGTAGGCACGAGCGAGTAACTACTAATGAGCTCTACACGTAGGCAT
GTGTAGAGCGAGTAACTACTAATGAGCTCTACACTACTAACGTGT
Right flanking sequence: Indices 1171995 -- 1172494
CAGGGAGCGAGCGGAAGTCTCGGTGCTCTTTGCTTCTTCTTTCTTCGTTGCGTCTTTGCTCTCCA
GGAAAGAAATTTGTGCTGATCTCGGAGTTTTCTTTGCTTGTTGTGATAAGTGATAATAAGAATGA
CTAGAAAGAATTGAGGAAGAGGGACTTGCAGTGTTGGTTCTGAGAGAGGGAAGGCGGGGAAGATT
TACACGGAAGCATACTCACCAAGTCTCCAACCTCCGCGGTTTCATAATTTAGCCAACGTCTTTTC
TTATTTTTTTTTATACTTCATTCAGTATAAGTAATTAATGGTCAAGATATACATTTATCATATGA
ATTTTTTATAAAAATACTCAGAATTTAGTATAAACACCACAACACTAACTAGAAATAAAAATAAG
TTCAATTTGAAACACCGAACTATTTCAGTTTCAATATAAGACTATACAAGTTTGAACATTGGTCA
ATTCAATACAAACATCTTGCATCGTCAAGTGTTAATATTTAGTCT
Found at i:1187250 original size:18 final size:18
Alignment explanation
Indices: 1187227--1187301 Score: 105
Period size: 18 Copynumber: 4.1 Consensus size: 18
1187217 CCAGCGAGTA
1187227 ACTACTAACGAGCTCTAC
1 ACTACTAACGAGCTCTAC
*
1187245 ACTACTAAAGAGCTCTAC
1 ACTACTAACGAGCTCTAC
*
1187263 ACTACTAATGAGCTCTAC
1 ACTACTAACGAGCTCTAC
**
1187281 ACTACGGCACGAGCTCTAC
1 ACTAC-TAACGAGCTCTAC
1187300 AC
1 AC
1187302 GTAGGCATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
18 39 0.76
19 12 0.24
ACGTcount: A:0.33, C:0.32, G:0.13, T:0.21
Consensus pattern (18 bp):
ACTACTAACGAGCTCTAC
Left flanking sequence: Indices 1186727 -- 1187226
CCTTTGGGGAGTGATTGATTTAAGAGCACGGTATCCAAGTAAAGAACTCCAGGGGGGGAGCTAGA
TTTCACGTAAATAGCGAGATCACTCAAGTAGTTAAGTCTCCTTTCATCCAATCTCATCATCTTCG
TCAAGTCTACCACGGATCAAGCAGTGGAAGAGAGCATCGGAATTGGACGACCTACCCTGGCTACG
GCATCAAGTTCACCTTTCTTTCCTGGGGCACAGCATCTCGATCATGAGACATTGGTCAAGGAAAA
GCATTAGCCAAGTCCCTTCTTTCATAGCGGGCAAGCCAGACTCTGATCCCAGGAATCATTCGTAG
ATCACTTTATCAATCCTTACTTAATGGATTTATTTTCCTATTAATGAGAAAAGCGCCAGAACAAT
CGATAGTGCGCGGCTCCAACCCGATTTATTTGGAAGTTCTAGCTGGGGCTCATCATGGGGCGTAC
GTAAGACCTTGGCTTGACGAACTAGTCTTTCTTATCCAGCGAGTA
Right flanking sequence: Indices 1187302 -- 1187801
GTAGGCATGTGTAGAGCCAAAAAGAGCGAGTAACTACCTATCCTTAGAACTCCTTGAGCCCGACC
CAGGTGACCTCCTTTACACAACTACAAGTCATAGATATTCTACAGAATAGAAGAAATATTCTAGT
AGATCCCTAGTCACAAGCCCTAAGCAACTCCCGGCGGCCTACCTAAGCAAAGAATTGAACTCATA
GATAAGAATACCGAGTGCTCTTACCTGCTTGACCTAAGAAGAACTCTTTTCCCAGCTTGTGAAAC
TACTGAAAGAGATGTGGGTGGAAAGAGATAGCAGTGGGTCAATCAACTACTGCATCCCACTACTG
AAAGCACTATCTATAGATTCTATAAACCTATTACCTCTGACCGAAGGGAGATATAAGTAAGGAGA
ACCCAACGATCAGTCAGGTCTTGTCTCACCGAACGAAGACATGTGTGAGAAGCCCTTCTTTCTTT
TCCTTTTCCTTTTAGTTATATCAGAGGTAGGGCGACTAGTTCCAT
Found at i:1196554 original size:31 final size:31
Alignment explanation
Indices: 1196513--1196574 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
1196503 ATGACTTATC
*
1196513 GGAATAACATAATTGACACAGCCACAGAAGA
1 GGAATAACATAATGGACACAGCCACAGAAGA
* * *
1196544 GGAATGACATAATGGACACGGCCAGAGAAGA
1 GGAATAACATAATGGACACAGCCACAGAAGA
1196575 ATAGAAAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.45, C:0.18, G:0.26, T:0.11
Consensus pattern (31 bp):
GGAATAACATAATGGACACAGCCACAGAAGA
Left flanking sequence: Indices 1196013 -- 1196512
CATAATAAAAAAATAGGAAGTGAAAAATGTTAAGCTTTCCGGTCAAGTGAATTCAATCTCTGGCA
TCAATATTTAATAGTTACTCTGGGGAGTGTATCATACCATGATGTGGTCCATCTTATCAGTGAAT
TTGGACTTCTTATCTGGGTGAAACTCGAAGACTCTCTCAGTTACAAACTTGCTATCTTCATCAGC
TAGTTTCTCACCATCACTATACATAATACCAAAAAACAACAGAGACAAGAGTTTCTTTTAATAAA
GACTTTATGCACAGGTGCAATATAAGACAGTCTTAGCAGCCCATCTATCAGTGGGGTTCTGATCC
CACAAGTCACACATGCGTTCCCCGCGCGCACAACAGAGAGAGAGGGAGACGTCATACATGGCTTC
ACGCAAGATTCTTCTAGAAATTGAGTTCACCGAGGTACTCCTCTTCAGGCGAGTGCGTCGACAAG
GTTTCTAGTACTGTAATTAAGTTGCCCCCAGGATTATGACTTATC
Right flanking sequence: Indices 1196575 -- 1197074
ATAGAAAAAGGGGAAATGAACAATTAAGTAATGGACATGTTCGTGTTACCATGAGGTGTTTCCGA
CATGAACTTTCTTTCTACGAACTTCACCTTCTGTGTCTATTTCTTCTTAACCATCAAAGGTCAAG
GGATGTTGGGGCACAAGGACTCCACCGTGGTTCATGCTTCGTTGCTTTAGTCCGTATCCTCGCGA
GGAGGTGAATGAGCAAGCAAGTAGGGAAACCCACCCTTATAAAGATCTTACCCACTTTCTACTGC
TCCGGATATTAATGTAACAGTTCTCTTTTTTAGTTTCTTCATCTCGATTTGATCTATCAATTTGA
TAAACTACTGCCCTCGTGAACAACAAAAGATCAAATATAGCTTTTCATCTCTCAGCTCCTTAATT
AAAAAGGAATTCTGCCGACATTTGCATATTCCGGTCTTCCCTTAAAAAGAAGGAAGTCGGGTGCA
GATCGTTCCAAGTATGATAGAGAACTTCAATCTGTGGCAAGGGGA
Found at i:1234559 original size:34 final size:34
Alignment explanation
Indices: 1234516--1234587 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
1234506 CAAACCCAGC
* *
1234516 GAGTGAAACGTAAGTGGAACGAG-CAACAAGAGCA
1 GAGTGAAACGGAAGTGGAACGAGCCAA-AAGAGAA
1234550 GAGTGAAACGGAAGTGGAACGAGCCAAAAGAGAA
1 GAGTGAAACGGAAGTGGAACGAGCCAAAAGAGAA
1234584 GAGT
1 GAGT
1234588 CATACTTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 32 0.91
35 3 0.09
ACGTcount: A:0.44, C:0.12, G:0.35, T:0.08
Consensus pattern (34 bp):
GAGTGAAACGGAAGTGGAACGAGCCAAAAGAGAA
Left flanking sequence: Indices 1234016 -- 1234515
TCTACTCCTGATCTGAAAGGTAACAAGAACACACCTGGGTCTAGTAACCTGGTAAGAATGTTTAA
AAGAGGTGCACAATCCCTGGAAATTGATCCTAAATCCAATACCAAGAAATATGGGAAGTGAGCCT
AGTGTAAGAAATGGTGGTACCAACATGCAGTTCATGCCAAGAACTTAATTTCCTTTGAAGGGTCT
TACCCAGGACCATGAGGTGTGAGTTTGACTTTGACCTACATCAAACACCTGAATGTCAGAAGGAA
CGAATGGCCATTTTTCATTTTAGCCTGGATGTTAGGGATTGGTACCGTACCTATAATGTGAGCAA
TCCTCAGCATAATTGGGATGAATTGGTGGATGCAGTTAAAGATAGATTTTATGAAGGAAGTGAGG
GGGATGTGATAGATATCTTTAACAAAATGCAGCAACAAGGCGCGTAGCGTTGAAGAAACTATTGG
GAGGTTTGAGAAAATGAGAGCAAAATTGTTGCATTCAAACCCAGC
Right flanking sequence: Indices 1234588 -- 1235087
CATACTTGATTTCGAGTTTCAATAGCGGGTTGAGACCAGGCATTGGGTCAAAATTCAAAAACCGA
AAACTCTTAATGAACTATATCGTAGTGCTATCCACTATGATAAGGCCACAGAACTAACTATTCAA
AGAGCCAAAACCACCTACAAAACTCCTAAAAATCCAAATATGCAGCCTAGGTTCAATCAGACCAC
TGAAGGGCTTCCGCTCGCTCTTCCTGGCTCTTTTTGGCTCGTAACATTAGTAGTTACTCGCTGGG
GGATTTTTTGGGGTGGGGATAGATAGGGTTGGAAAGTTCATGAAGGAGAGGGGGCGCCTGATAGT
GAAACTTATACTATTGGAGTTGAGGCTTATAGGAAAGAAGGAATGATAAGATCTTTGATTTAGAA
GCAGTAACCGGTGTCAAGTAATAGGCATGGGCAAGGATAAAAAGTAGTTGGAAAAAAGGGTTTAT
TCACCTATGCAAGATAGGCAAGTACATGTTTTAGGAGATAGGCTA
Found at i:1252237 original size:23 final size:24
Alignment explanation
Indices: 1252191--1252240 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
1252181 ACTCTTGCCC
*
1252191 AGCGAGTAACTACGGCATGTTACG
1 AGCGAGTAACTACGGAATGTTACG
*
1252215 AGCGAGTAACTAC-TAATGTTACG
1 AGCGAGTAACTACGGAATGTTACG
1252238 AGC
1 AGC
1252241 CAAAAAGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (24 bp):
AGCGAGTAACTACGGAATGTTACG
Left flanking sequence: Indices 1251691 -- 1252190
AAAGAAGTCGCTACTCGAAATCTTTTCAAGTTTCCTAATTGAATATTGCCGTTGTTTAAAACAAA
AGCATGGAGTCTCACTATTCACAATATATCCAACCAACACAGGAAATAAAATCTCCCATAGAGTA
GTTGAAGTTACTATATATGAGAGTTACTTTCTGATGGATTCTTTGCTTACATTCCTAGTCTACTT
CATGAAGGAGTTGGGAAAAGAGCTCAGACTGACGGAAGAAAGCGAAGAAGTACCACACCTCTGCA
TTAGCTAGTTCTCCAAGAAGAGCAGTAGGCTGCTTGAGGAAATAAGGAAGACAGTCAAGGCCATT
ACCTTTTTTTCCTTAGCTTCCAAGCGCTATGCCAGGTAGCTGAGACCTACTTTCCGCTATCCTTA
TGCTTGTTTGGAACTCCCCTACTACTATGTTTAGTAATACGCTGGCAATGCCAATCGCTACTCTT
TCCCCGTTGTTTCCTAATCGGTCACTGTAACTACTACTCTTGCCC
Right flanking sequence: Indices 1252241 -- 1252740
CAAAAAGAGCAAAACCAACTCAAACCCTAAATTCAGGTGCATTTTCAAAAATATATCACCCCACA
TTCCTAGTGGAGTTTGAATTGGAGGGAAAGTAGAAAATGCCCCTACCTAACCTAATATTATCTCC
CACAACGTTTTCACAGAAAATGATTTGAAGTGATGTCCCTAGTGTTAGTTCTCCTGTGTTTGCCT
TCCTTCGTCTTTCCCATGCTTGCAGGAAAAGCACTTGCAAGTAAGTCGGATAAGCTCCGAGCTCT
CTGGATAAGTAAGTCCTTCCTTCAGAAAGTTCAGTAAATAGTCGTTCCGGAAGTGCTTAATGTGA
GTTTGATTCTAGCGTATGCTCAGCAGCTCCTACACATTCTTCTCAGTTAACCCGCGTGGTAAGTT
TTCTTCTTCTTCCTCTCAGGGCAGTTTACAGCACATCAGGGTGTGCTGCGGCGTACTTCTGGGTC
GATTTGGCAATAAAAATTTCAATTCATTTATGTTTTATAATGCTC
Found at i:1256320 original size:15 final size:15
Alignment explanation
Indices: 1256300--1256378 Score: 68
Period size: 15 Copynumber: 4.6 Consensus size: 15
1256290 GTACCTTGTT
1256300 TTGTTTTGATAGTAC
1 TTGTTTTGATAGTAC
1256315 TTGTTTTTAGAGTACGTAC
1 TTG-TTTT-GA-TA-GTAC
1256334 TTGTTTTGATAGTATATTAC
1 TTGTTTTGATAG-----TAC
1256354 TTTGTTTTGATAGTAC
1 -TTGTTTTGATAGTAC
1256370 TTGTTTTGA
1 TTGTTTTGA
1256379 AAGGGGATGC
Statistics
Matches: 54, Mismatches: 0, Indels: 20
0.73 0.00 0.27
Matches are distributed among these distances:
15 13 0.24
16 9 0.17
17 4 0.07
18 6 0.11
19 7 0.13
20 3 0.06
21 12 0.22
ACGTcount: A:0.20, C:0.06, G:0.19, T:0.54
Consensus pattern (15 bp):
TTGTTTTGATAGTAC
Left flanking sequence: Indices 1255800 -- 1256299
GAAATTCACTGCTTTAAGCAAAACAAGTATGTTGACAGAGTATAAAAGAGAAGCTTATTAATGAA
GGATATATATATGTGAGGAATAAAGAGGAGCTAGGGAAAAGCATTGGCTAGAGAGTAGCACCGGT
GTAGTCACGAGATAGCTTTGTTTGTTTGGAAAAGGCATCTGAGGCTTTTGTTTTGAAGCCAGCCG
CAGCAGTAAGAATGGGTGTTGTAGCCAGAGTCATAAATCTCATATAGAACCTAATATGTTGACTT
GGAATAGAAAGAAGAAATAGGGCTTAGAGCGATATATATGTCAAAGGTTTGTTATGTTGGGTCTA
GTCAAAGTTCAAACTAGCCAGGTGGCACTAAGTTTTTGTGGTCATGGGATAGACTTGAGAGCTAG
GGACAGGGGTGATAGGTTTGTCAGGTCTTTGAGTGAGCCAAAGACCGGTTTATGCATGCACGAAA
CTCAATAGTACTTGTTTTGAGAGTATACTAGTGGAGTACCTTGTT
Right flanking sequence: Indices 1256379 -- 1256878
AAGGGGATGCATAAGATAAGTCAAGTAGTCATCTACGGGCAGCGTCAAGGAGATAAGTTGTTAGG
TAAGCAAATAAAAGAGAAAGTAGGGCGTAACGAGTTTCCAGTTTGCGGCGAGGAGACCCTCCCTT
TCTAGTAGACTCAAAAAAGGGCATAAAATCTGAACGAACCCAGGGTCCGTTTTTTGCTAATAAGA
CTCACTAGATAAAGAATCGTTGGATGGAAGGAGAGAAAACCCACCATCACCAAAAGCTTTATCCG
GTTTAGAAATACTATCCCAAGTCAACCAACTCCGTAACATAACATTTGGAAAGGATCCCAGTCAA
AGAAAGAGTGCTAAACAAGATGGCCTTAACCAAAAGAAAAGCATCTGGTACGAGTTGCTGGTACG
GCTTTTGATGCACATAGAGAAGAAAGCAGGTTAGAACATAACATCATAGGAATGCGTTTTCATAA
AGAAAAGTCGAAGTCAAATATAATAGAAAAGCACGCCAGGGCAAG
Found at i:1256347 original size:19 final size:19
Alignment explanation
Indices: 1256311--1256369 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
1256301 TGTTTTGATA
* *
1256311 GTACTTGTTTTTAGAGTAC
1 GTACTTGTTTTGATAGTAC
*
1256330 GTACTTGTTTTGATAGTATA
1 GTACTTGTTTTGATAGTA-C
*
1256350 TTACTTTGTTTTGATAGTAC
1 GTAC-TTGTTTTGATAGTAC
1256370 TTGTTTTGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
19 16 0.48
20 3 0.09
21 14 0.42
ACGTcount: A:0.22, C:0.08, G:0.19, T:0.51
Consensus pattern (19 bp):
GTACTTGTTTTGATAGTAC
Left flanking sequence: Indices 1255811 -- 1256310
CTTTAAGCAAAACAAGTATGTTGACAGAGTATAAAAGAGAAGCTTATTAATGAAGGATATATATA
TGTGAGGAATAAAGAGGAGCTAGGGAAAAGCATTGGCTAGAGAGTAGCACCGGTGTAGTCACGAG
ATAGCTTTGTTTGTTTGGAAAAGGCATCTGAGGCTTTTGTTTTGAAGCCAGCCGCAGCAGTAAGA
ATGGGTGTTGTAGCCAGAGTCATAAATCTCATATAGAACCTAATATGTTGACTTGGAATAGAAAG
AAGAAATAGGGCTTAGAGCGATATATATGTCAAAGGTTTGTTATGTTGGGTCTAGTCAAAGTTCA
AACTAGCCAGGTGGCACTAAGTTTTTGTGGTCATGGGATAGACTTGAGAGCTAGGGACAGGGGTG
ATAGGTTTGTCAGGTCTTTGAGTGAGCCAAAGACCGGTTTATGCATGCACGAAACTCAATAGTAC
TTGTTTTGAGAGTATACTAGTGGAGTACCTTGTTTTGTTTTGATA
Right flanking sequence: Indices 1256370 -- 1256869
TTGTTTTGAAAGGGGATGCATAAGATAAGTCAAGTAGTCATCTACGGGCAGCGTCAAGGAGATAA
GTTGTTAGGTAAGCAAATAAAAGAGAAAGTAGGGCGTAACGAGTTTCCAGTTTGCGGCGAGGAGA
CCCTCCCTTTCTAGTAGACTCAAAAAAGGGCATAAAATCTGAACGAACCCAGGGTCCGTTTTTTG
CTAATAAGACTCACTAGATAAAGAATCGTTGGATGGAAGGAGAGAAAACCCACCATCACCAAAAG
CTTTATCCGGTTTAGAAATACTATCCCAAGTCAACCAACTCCGTAACATAACATTTGGAAAGGAT
CCCAGTCAAAGAAAGAGTGCTAAACAAGATGGCCTTAACCAAAAGAAAAGCATCTGGTACGAGTT
GCTGGTACGGCTTTTGATGCACATAGAGAAGAAAGCAGGTTAGAACATAACATCATAGGAATGCG
TTTTCATAAAGAAAAGTCGAAGTCAAATATAATAGAAAAGCACGC
Found at i:1262170 original size:27 final size:27
Alignment explanation
Indices: 1262131--1262184 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
1262121 CTATGATCGC
*
1262131 TGCGTGAGGAATGAATACCACTTACTA
1 TGCGTGAGAAATGAATACCACTTACTA
1262158 TGCGTGAGAAATGAATACCACTTACTA
1 TGCGTGAGAAATGAATACCACTTACTA
1262185 AGTTAGTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TGCGTGAGAAATGAATACCACTTACTA
Left flanking sequence: Indices 1261631 -- 1262130
GCAATACATAATGATATACGTTATGTGATTGATAAGTTAAAAACACACCGAAGAGATGACAAAAC
TAGGAAAGGTAAAGACGCGAGATAAGATAGGGCATTTTGCCTAGCCCCAGATTTCATAATGGGTG
TCCACTACCTACAGGCAGGAGTTTGTCTCTATCTTCACTTTCATTCAAAGAGCTTTAGCCTGCTT
CTATAATAATACCACAATCTCTATGTAAGCACACCTTTCTTTTTGCTTGTATGGAAGTGAAGCAT
TCATTTCTTTCTTACTTAGGTCTCCTCCTTTCAAGAAAGATAGAAGAACGGTATAGCAGGAACAG
TGGACTCAGCAGGGTGGACTCACTATGGAAAAAAGACTAGGGCGCTAAGCTGGTATGCCTCTTTC
TTTTTGTAAGTTCTATACAATAAAAGCTAATAAGGTTCCTTGAAGGACCCGAGTCAGATCGAGCG
AGGAGACGGTGGGCAGGTTCACTATGATTGCTAATCTATGATCGC
Right flanking sequence: Indices 1262185 -- 1262684
AGTTAGTGAGTCAACCTTCGTCCTAGAGGAAAAACTACTTGAGTGTGTAATGTAAGTACACAGCT
ACTTGAAAAGATGGTAGTTTTCATAGATATTTCATACATAGCCCGCTTAGATTAATTCTTGGCCG
AGAAGGAGCTAGCTGTATCCAAGAGTCATATTACTTTCAAAGAGGTTTAGTCATCAGCCTCAGTC
AATTGTTGTTTTGTATTCAAGGTAGGACTCCGTAGGCTTGCGTCGTCTGTTAAGCAGCGTCCACT
TCAGCCAAACGGGAGTCTTTTTAGTCCAACCTAAAGCATCCCTCTACTGGCTCTAATGCCTTAAC
CCCCAAAGACAGAGTACAAAAGGCTTCCTGGCTCTTTTTGGCTCTTCTTTTTGCTCGTAACATTA
GTAGTGTAGAGCTCATTAGTAGTTACTCGCTCGTTAGTAGTTACGAGCTCTTTAGTAGTTACTCG
CTGGAAAAGAAAGGTTGTTCCAAAATATAGGGCTAATAGAGAGTG
Found at i:1262593 original size:18 final size:18
Alignment explanation
Indices: 1262570--1262636 Score: 82
Period size: 18 Copynumber: 3.7 Consensus size: 18
1262560 TTGCTCGTAA
1262570 CATTAGTAGTGTA-GAGCT
1 CATTAGTAGT-TACGAGCT
**
1262588 CATTAGTAGTTACTCGCT
1 CATTAGTAGTTACGAGCT
*
1262606 CGTTAGTAGTTACGAGCT
1 CATTAGTAGTTACGAGCT
*
1262624 CTTTAGTAGTTAC
1 CATTAGTAGTTAC
1262637 TCGCTGGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
17 2 0.05
18 40 0.95
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (18 bp):
CATTAGTAGTTACGAGCT
Left flanking sequence: Indices 1262070 -- 1262569
CGAGTCAGATCGAGCGAGGAGACGGTGGGCAGGTTCACTATGATTGCTAATCTATGATCGCTGCG
TGAGGAATGAATACCACTTACTATGCGTGAGAAATGAATACCACTTACTAAGTTAGTGAGTCAAC
CTTCGTCCTAGAGGAAAAACTACTTGAGTGTGTAATGTAAGTACACAGCTACTTGAAAAGATGGT
AGTTTTCATAGATATTTCATACATAGCCCGCTTAGATTAATTCTTGGCCGAGAAGGAGCTAGCTG
TATCCAAGAGTCATATTACTTTCAAAGAGGTTTAGTCATCAGCCTCAGTCAATTGTTGTTTTGTA
TTCAAGGTAGGACTCCGTAGGCTTGCGTCGTCTGTTAAGCAGCGTCCACTTCAGCCAAACGGGAG
TCTTTTTAGTCCAACCTAAAGCATCCCTCTACTGGCTCTAATGCCTTAACCCCCAAAGACAGAGT
ACAAAAGGCTTCCTGGCTCTTTTTGGCTCTTCTTTTTGCTCGTAA
Right flanking sequence: Indices 1262637 -- 1263136
TCGCTGGAAAAGAAAGGTTGTTCCAAAATATAGGGCTAATAGAGAGTGTAGATTCCAATCTGTAT
CTATCGGGATAGTAAGGTCAGTTCGTTTTCAGTTCGTTCGTGAAGCCTTATTTATATAAGGGTAG
GCTGGCTAACTCTTAACTGGTAATGCCCAATCCTCCGATTACTTGACTGGGGTAACTAACTCTTT
ATGAATCAATTTATAGAAGCGATGACTCTGACAGCTTGCCTGACCGTGTGATAACTGAAAGGCCC
TGCCTCTTTTTCCGCATACTTCAATTACATACTTTTGGTTCATCTACGCACTTTGCTGGGAATGC
CCCTTGACTCGTTTCGTAAGTTGTTGAAGCGTAAAGCTCAAAGCTCGAATGCAAAAGGGGAAGTT
CAAAAACTTATATGATAATTTGGACCCGTTCGACTTTCTATTTATATGACTAGATAGTTTCTTAG
GGAATTTACCCCTATTCCAAAGTATGGGAAGAAGGGCACTATAGG
Found at i:1262623 original size:36 final size:36
Alignment explanation
Indices: 1262572--1262641 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 36
1262562 GCTCGTAACA
1262572 TTAGTAGTGTAGAGCTCATTAGTAGTTACTCGCTCG
1 TTAGTAGTGTAGAGCTCATTAGTAGTTACTCGCTCG
*
1262608 TTAGTAGT-TACGAGCTCTTTAGTAGTTACTCGCT
1 TTAGTAGTGTA-GAGCTCATTAGTAGTTACTCGCT
1262642 GGAAAAGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 2 0.06
36 30 0.94
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (36 bp):
TTAGTAGTGTAGAGCTCATTAGTAGTTACTCGCTCG
Left flanking sequence: Indices 1262072 -- 1262571
AGTCAGATCGAGCGAGGAGACGGTGGGCAGGTTCACTATGATTGCTAATCTATGATCGCTGCGTG
AGGAATGAATACCACTTACTATGCGTGAGAAATGAATACCACTTACTAAGTTAGTGAGTCAACCT
TCGTCCTAGAGGAAAAACTACTTGAGTGTGTAATGTAAGTACACAGCTACTTGAAAAGATGGTAG
TTTTCATAGATATTTCATACATAGCCCGCTTAGATTAATTCTTGGCCGAGAAGGAGCTAGCTGTA
TCCAAGAGTCATATTACTTTCAAAGAGGTTTAGTCATCAGCCTCAGTCAATTGTTGTTTTGTATT
CAAGGTAGGACTCCGTAGGCTTGCGTCGTCTGTTAAGCAGCGTCCACTTCAGCCAAACGGGAGTC
TTTTTAGTCCAACCTAAAGCATCCCTCTACTGGCTCTAATGCCTTAACCCCCAAAGACAGAGTAC
AAAAGGCTTCCTGGCTCTTTTTGGCTCTTCTTTTTGCTCGTAACA
Right flanking sequence: Indices 1262642 -- 1263141
GGAAAAGAAAGGTTGTTCCAAAATATAGGGCTAATAGAGAGTGTAGATTCCAATCTGTATCTATC
GGGATAGTAAGGTCAGTTCGTTTTCAGTTCGTTCGTGAAGCCTTATTTATATAAGGGTAGGCTGG
CTAACTCTTAACTGGTAATGCCCAATCCTCCGATTACTTGACTGGGGTAACTAACTCTTTATGAA
TCAATTTATAGAAGCGATGACTCTGACAGCTTGCCTGACCGTGTGATAACTGAAAGGCCCTGCCT
CTTTTTCCGCATACTTCAATTACATACTTTTGGTTCATCTACGCACTTTGCTGGGAATGCCCCTT
GACTCGTTTCGTAAGTTGTTGAAGCGTAAAGCTCAAAGCTCGAATGCAAAAGGGGAAGTTCAAAA
ACTTATATGATAATTTGGACCCGTTCGACTTTCTATTTATATGACTAGATAGTTTCTTAGGGAAT
TTACCCCTATTCCAAAGTATGGGAAGAAGGGCACTATAGGTACAG
Found at i:1264604 original size:15 final size:15
Alignment explanation
Indices: 1264584--1264613 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1264574 TAGAAGTAGA
*
1264584 ATACCATATCGCCGG
1 ATACCATACCGCCGG
1264599 ATACCATACCGCCGG
1 ATACCATACCGCCGG
1264614 CTACTTGCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.37, G:0.20, T:0.17
Consensus pattern (15 bp):
ATACCATACCGCCGG
Left flanking sequence: Indices 1264084 -- 1264583
CTTATTTCCTTTTTGAAGTAAGTGGGCGACCACGATAAGGCATCAAAGTCCAGGATGCCCGCTCA
CTCACTGAGGTGTACTCATTTCCATCTTGTAGAAAGAGTTACGTAAAAAGAGTCAAAGTACTTCA
TGCCGAGGGCCCCTTCCTTGGCTGAGAAAAGTAGAGCCAATGCTTATAGAGCAAAGGGAGGAGAA
CTAACTAACTCTGCTTATACAGCCTGTACTAAAACTCTTGCTGGCAAGCCTTTTTCTTTCTTGTA
AAGAGTCCTCAAGCAATATGGATGGATGGTAGACGGCCTATCTCATTGGTGCTATCTCCTTGGTA
AGGTTTATCCCTTAGGTCCTTGGTAGACCACCTATCTCATTAGTAGGGTTTATTTATACCTTACG
TATTGGTAAGCTTTATATATCTCTTACACAAACATATCTCTCCCTAAACAAAGAAAGAAATCCTC
CTTCCCTCCGGAGAATACCGCTTCTCGTATACCCGTAGAAGTAGA
Right flanking sequence: Indices 1264614 -- 1265113
CTACTTGCCCACTTAATATATATGGGCCCAAGAAGCAAACAAGCATAGGCGCGCAGCGGCTAGTT
GTCTAGTTTGTCAAAAACTAGCTTTCCGTTTCACTTCACTTTTGAAATGCTAATAATTTGGTTTT
AATATTTTAGAGAGTACTGCTGGATAACCAAGAGCTGGACTTGCTGAAGCTAGATAACAAGGTCC
GGTTCATACTTGGTGTGGTCGAGGGAGAGATAATAGTGAGCAATAGAAAGAGAGCCGACCTTCTC
CTTGAGCTGAAACAGAAGGGTTTCATCCCTTTAACAAAAAAGACAAAAGGCATGGTTGCGGGGTC
CCCAGGTGCAGAAGAGGATAATGAAGACATGTCTCCTGAGGCTGTTGCAGGAGGTGTGATTAGAG
CTAACGACTATGAATATCTCTTGTCGATGCCTTTCGGTACACTAACGCTTGAAAAGGTCCAGCAG
TTATGTGCTGAGAGGGACAAGTTGGAGGCCGAGGTTGCAGAGTTG
Found at i:1272471 original size:23 final size:18
Alignment explanation
Indices: 1272400--1272461 Score: 99
Period size: 18 Copynumber: 3.4 Consensus size: 18
1272390 CCAGCGAGTA
1272400 ACTACTAATGAGCTCGTA-
1 ACTACTAATGAGCTC-TAC
*
1272418 ACTACTAACGAGCTCTAC
1 ACTACTAATGAGCTCTAC
1272436 ACTACTAATGAGCTCTAC
1 ACTACTAATGAGCTCTAC
1272454 ACTACTAA
1 ACTACTAA
1272462 CGTGTAGAGC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 2 0.05
18 39 0.95
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.26
Consensus pattern (18 bp):
ACTACTAATGAGCTCTAC
Left flanking sequence: Indices 1271900 -- 1272399
TTCTTTATTCATCCTCTCACTATCCTAGCGGTAACTTTTTCTTCTTATCTCTAATTTCATGTCTA
TTGATGAGTCTGAAGAAAAGAAGAAATGTGTAGCTGCGGAGAAATTACCCGCTACACCTTCATCC
ACAAAGAAACGTGTAGCTAACAAGAAGCGACGAACTACAGCTTCACCTACTACTCCAGTTATGTC
GTTCATTTCTGACATGAAAGAAACTCGGCAAATTATGAATGAAACTTAAGTTAAGAAGAAGCTTA
TCAAAAATTCAAAGCTTCCTGCTCGACTCTTCAAAAGCTAAGCTGGTCTGACCTTGGTTGGTAGA
GAAAGTCCCCCCCCTTGCGCAGCGGGGGAAGGATAAAAGAAAAGAAGAAGAGTGGTTAGCAGGGC
GAGAGGTGTTGAAGCGAACCTCCGTCTTCCTTTCGATGTCTCGGGCATTCTAGAGCCTTTGAACT
CAATAGGCTTCCTGGCTCTTTTTGGCTCGCTACATCCAGCGAGTA
Right flanking sequence: Indices 1272462 -- 1272961
CGTGTAGAGCCAAAAAGAGCCTTCAAGAGCCTTCAAGAGCCAAAAGAGCTCGCTAGAGCAAAAAG
AGCCGCCGATAGGCCTGTGAAAGCCTTTCGTACACAGCATCTAACTGAGGAGCCGACCCGCCCTA
GTCTCCCAGATCCACTCATTGACTTAAGCACCTGGGAAAGAATATTACGTACTTGAACCTCACAA
GACAAGGGAAGTCGCCTTCTATTCGGGCGAGGGAAGATTCATCCATTCGATCTCGCCTGAAGAAG
AGCAAAAAGAAGAAAGGAGGAAAGGACTGAACGCCCCTGCTGGGCTACTTTGCGGATATAAGTCA
GAAAAGTAAGGAAGAGATGGCCTTATATAGCTAGCTAAAGCGTAGCGATTCGATCTATATCGGCA
TAAAAATTTCCTTTGCCTACTTGCTTTCTCTATACATAAATAAGTTTTTCCGTCTGCCCCTGTTG
ACTTATCGTCTTTAGTTAGGTTCTATAGAGAAGCATTCCCCCTTA
Found at i:1272489 original size:10 final size:10
Alignment explanation
Indices: 1272476--1272502 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1272466 TAGAGCCAAA
1272476 AAGAGCCTTC
1 AAGAGCCTTC
1272486 AAGAGCCTTC
1 AAGAGCCTTC
1272496 AAGAGCC
1 AAGAGCC
1272503 AAAAGAGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.22, T:0.15
Consensus pattern (10 bp):
AAGAGCCTTC
Left flanking sequence: Indices 1271976 -- 1272475
GAAGAAAAGAAGAAATGTGTAGCTGCGGAGAAATTACCCGCTACACCTTCATCCACAAAGAAACG
TGTAGCTAACAAGAAGCGACGAACTACAGCTTCACCTACTACTCCAGTTATGTCGTTCATTTCTG
ACATGAAAGAAACTCGGCAAATTATGAATGAAACTTAAGTTAAGAAGAAGCTTATCAAAAATTCA
AAGCTTCCTGCTCGACTCTTCAAAAGCTAAGCTGGTCTGACCTTGGTTGGTAGAGAAAGTCCCCC
CCCTTGCGCAGCGGGGGAAGGATAAAAGAAAAGAAGAAGAGTGGTTAGCAGGGCGAGAGGTGTTG
AAGCGAACCTCCGTCTTCCTTTCGATGTCTCGGGCATTCTAGAGCCTTTGAACTCAATAGGCTTC
CTGGCTCTTTTTGGCTCGCTACATCCAGCGAGTAACTACTAATGAGCTCGTAACTACTAACGAGC
TCTACACTACTAATGAGCTCTACACTACTAACGTGTAGAGCCAAA
Right flanking sequence: Indices 1272503 -- 1273002
AAAAGAGCTCGCTAGAGCAAAAAGAGCCGCCGATAGGCCTGTGAAAGCCTTTCGTACACAGCATC
TAACTGAGGAGCCGACCCGCCCTAGTCTCCCAGATCCACTCATTGACTTAAGCACCTGGGAAAGA
ATATTACGTACTTGAACCTCACAAGACAAGGGAAGTCGCCTTCTATTCGGGCGAGGGAAGATTCA
TCCATTCGATCTCGCCTGAAGAAGAGCAAAAAGAAGAAAGGAGGAAAGGACTGAACGCCCCTGCT
GGGCTACTTTGCGGATATAAGTCAGAAAAGTAAGGAAGAGATGGCCTTATATAGCTAGCTAAAGC
GTAGCGATTCGATCTATATCGGCATAAAAATTTCCTTTGCCTACTTGCTTTCTCTATACATAAAT
AAGTTTTTCCGTCTGCCCCTGTTGACTTATCGTCTTTAGTTAGGTTCTATAGAGAAGCATTCCCC
CTTAAGGAAGGCTAGCTATATGCTATAACCTGGACTGACTTTGTC
Found at i:1274403 original size:21 final size:21
Alignment explanation
Indices: 1274377--1274416 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
1274367 GAGCTGCCTT
1274377 CACTCTATTAGTAAGGACATG
1 CACTCTATTAGTAAGGACATG
1274398 CACTCTATTAGTAAGGACA
1 CACTCTATTAGTAAGGACA
1274417 AGAGTAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (21 bp):
CACTCTATTAGTAAGGACATG
Left flanking sequence: Indices 1273877 -- 1274376
TCGCAACTTTCAGTACAGGAACGGGGAAGCAGAGGCTGCCACTATGGATACGCCAAGGCGAAAGC
AAATGTAAGCAACGCTCATTCTGTCGATGGCTCTGGTACAACAATACCAAATTCTCTAATGCAAT
AGCAAACGGGAGGAAGAATCAGAACTCCATCTTCAATCTCATGGTCAATTACCAAATTATATCGT
ATATAGACGACATTGCCTAGGCCTTCGCAAACCACTACAAGGCGGGCATTCCCCTTTTCCTCCAT
ATGACTTGCAATGCAAGCCAAGGTCGGTCTTGATTGAAGGGGGGAGGAATGGTCTTTTCATGTCT
TGTAATGAGTTTTAATGGATAATACTATCTATGATATTAGTTAATGGCATTGCTTTGGAGTAGAA
CTAGATATTCCAACGTGAAGTTGGGATAGGGATACACAAGCGAAGCTCAAGCTCGAACCTATAGA
TAGTGAGAGGCACGCAGATGCAAGACTGCAAAGGAGAGCTGCCTT
Right flanking sequence: Indices 1274417 -- 1274916
AGAGTAGAAAAGAGTCGCAAGGGCAGGAGGACCACAGTATGGTGGAATAGCAATAACAGTGCTAC
CTGGGTCATTTTATCATAGAAGTCTTGAAGGAACATCTCTATCTCTCCTTTCCCTAATCCACTAG
GTAGGCGCCGCTATACTTTGAAGAGTGCGGTACCGGACCTTCTGATACTCCTATTTTCCTGTTTT
TGCAGTGAGTTCAGAGATGATAATGAATGCTATTTACGTGGGTGGCAATGAGTATCGAGTCGACT
CGCTTGTACTTTATCAGTCAAGAAATGAATCCATTATATCCATGAAAAAGATGTCACATAAAAGT
AAGCTCTTACTATGTATGCTATAAATCTTTCACATAGATGGAACCGCCGATGGTTTGGTTTCCTA
TTCAAAACGTAATCTCTGCTTTCAAATACGAAATTCAGATGCTTTCCAATACGATCAAATGCCAA
TGCCAATGATATCAGTTTTCTGGGCATGAGGATGGTACTTATATG
Found at i:1279670 original size:10 final size:10
Alignment explanation
Indices: 1279651--1279679 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1279641 GTTGAACTTC
1279651 CTTT-TTTTT
1 CTTTCTTTTT
1279660 CTTTCTTTTT
1 CTTTCTTTTT
1279670 CTTTCTTTTT
1 CTTTCTTTTT
1279680 TCCCCAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.21
10 15 0.79
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
CTTTCTTTTT
Left flanking sequence: Indices 1279151 -- 1279650
ATTATTAATATTACCCATGCTCTCCAAAGTGCTATTTCCGAAACGAAACTCAAGCATGAAATCCC
AGATAAAGCAGATAGTGGGCATATTGCATGCAGGAACGTAGTAATGGATCCGGGTTGCCGTACTG
AAAATCCTTGTGTCAGTAGTTCTCAGCGTGCCAGCAGCCCTTTCAAAAGATTATTCACGTCATGC
CATGCCAGGTGTAAAGAGCGAAGGTTATAAATAATAGCAGGACCCATTCTTTTATTAAAAAAGAA
CGAAGAGGAATAATCCGAGGATCTTGAAGCAATTTATTTGAATTCATAAATAAGCCTTTCTTTTC
CAGTAGTGAAAATAGCCCGGTGCGCGCGGAAGGAATGAAAGATCAAGGTGTGTTCCTCTGTAACC
GGTCTAATCTTTTTCCTTTCCTATCTATAAAACAAAATAAGAAATAGATGGCGGCGGCTTCTATT
TTCATAGATCTTGGCGTGGGTTCTACCAACGAAACGTTGAACTTC
Right flanking sequence: Indices 1279680 -- 1280179
TCCCCAAAACTGCCCTTTACTTTCCTACACTACAATGCAAGAGTCCCGATTCTATGCTTTAGCAT
CTAGTCCCAAGAGATTCATTGCGGATATGGAGTCGACGGTTGATGTATCAGACTCGACCCGTCTT
TTCTTTTTTTTTCTTCCGTAACTTCTTTTTCTTCTTCGGCTAGAGCTTCTTCGGCTAGTCTTTTT
TCTCACGGCACTATTGCTCATTCTATCGACTACTGTGAATGAACTTCTTTTCCCTAGACCATTCG
AATGAACTGCTTGCTTTTCACCATCAACTACTGATAACTCCTCTTCACAGGCTTTGCGGTCTTGA
ACAAACAAATGTAACTGCGGAATCAGCTAGTCTTTTGCATGAGAATTGCACTTCTTCTTTCTTTC
CTACCTAAATCACACCTTCTTAGACTGCTTAGCACTGCTTTTGCCTGGTTTGAACTTTAACATTC
TTCTATAGAAATAAAGTATAGAGGCTGCTTTCTTTGGTTGAACTG
Found at i:1288251 original size:21 final size:21
Alignment explanation
Indices: 1288227--1288266 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1288217 TTATGCTTCC
* *
1288227 TGGCTCTTCTTTTTGCTCTTT
1 TGGCTCGTCTTTCTGCTCTTT
1288248 TGGCTCGTCTTTCTGCTCT
1 TGGCTCGTCTTTCTGCTCT
1288267 ACACGTTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.28, G:0.17, T:0.55
Consensus pattern (21 bp):
TGGCTCGTCTTTCTGCTCTTT
Left flanking sequence: Indices 1287727 -- 1288226
TGCTGCTTGCTGGTTTTTCCATCATCCAATCCAAAATCGAATGAAAGCGCTGTTCTTTCAAACCC
AGGAGTGAGTGAATTGAACTCACGTTCCCGGCTCGAGATATCACTCGCTGCCTCAAAACCCGCTC
TCGCTCGCCGCTACTCACGGGGTCTCGGTTGATTTTCCTTCCTTTAGCTACTCAGATGTTTCAGT
TCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATC
GGAGATCCATGGATCACAGACACTCTCTCTCCCCATGGCCTTTCGCCTAGAAAAGCGTCCTTCCT
TCTCAATGCCAGGGCATCCATCCAATGCATTCGAATCGTTAGCCAAAATGAAAGTTTACTGAACA
CCCACACAATCTCAAAAGACAAATGAAAGAAAAAGCGCCAGATGAGTTGACTTTCCAAATTCATA
AAGAAATAAGACCTATGAGTCAAACATCATGCATATTATGCTTCC
Right flanking sequence: Indices 1288267 -- 1288766
ACACGTTAGTAGTGTAGAGCTCATTAGTAGTTACTCGCTCTACACATTAGTAGTGTAGAGCTCAT
TAGTAGTTACTCGCTAGGAAAAAGAAGGAATGAAAATTATACACTATATATGATACAAAAAAAGA
AAAGAACTTAACTCACTTGAAAATCAACCAATTTGATTTAGTATGCTGACCTCGAACTACACTTC
GGCGCCTGAGCTTGTCAGGTTGTTCACTAGTGGGCCTGTTCGACCAGTCTCTCATTCGGTTGAGT
CAAATCTAGTACCTAAGACTCGATGAGAATAGCTTGAATTCTCCTGTGCCAGAATTGAAGTGGTA
CGGAACCCATTCTATGGGACTGATACAATGGCCGGTACAAAAGGTACAACACAAAGCCAAATCGG
TGGCTGGCCAAACACATAACTTTTGCATATAGATGAAAATTGAAAAAATAAAATGGCTATGCAAA
TTGCACATTTTTAACATAATTTACTGGTAAACCGACACAGAATCT
Found at i:1288295 original size:18 final size:18
Alignment explanation
Indices: 1288272--1288338 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 18
1288262 GCTCTACACG
1288272 TTAGTAGTGTAGAGCTCA
1 TTAGTAGTGTAGAGCTCA
**
1288290 TTAGTAGT-TACTCGCTCTACACA
1 TTAGTAGTGTA---GAGCT-C--A
1288313 TTAGTAGTGTAGAGCTCA
1 TTAGTAGTGTAGAGCTCA
1288331 TTAGTAGT
1 TTAGTAGT
1288339 TACTCGCTAG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
17 2 0.05
18 17 0.45
20 4 0.11
21 4 0.11
23 9 0.24
24 2 0.05
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (18 bp):
TTAGTAGTGTAGAGCTCA
Left flanking sequence: Indices 1287772 -- 1288271
AGCGCTGTTCTTTCAAACCCAGGAGTGAGTGAATTGAACTCACGTTCCCGGCTCGAGATATCACT
CGCTGCCTCAAAACCCGCTCTCGCTCGCCGCTACTCACGGGGTCTCGGTTGATTTTCCTTCCTTT
AGCTACTCAGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGC
TTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACACTCTCTCTCCCCATGGCCTTTCG
CCTAGAAAAGCGTCCTTCCTTCTCAATGCCAGGGCATCCATCCAATGCATTCGAATCGTTAGCCA
AAATGAAAGTTTACTGAACACCCACACAATCTCAAAAGACAAATGAAAGAAAAAGCGCCAGATGA
GTTGACTTTCCAAATTCATAAAGAAATAAGACCTATGAGTCAAACATCATGCATATTATGCTTCC
TGGCTCTTCTTTTTGCTCTTTTGGCTCGTCTTTCTGCTCTACACG
Right flanking sequence: Indices 1288339 -- 1288838
TACTCGCTAGGAAAAAGAAGGAATGAAAATTATACACTATATATGATACAAAAAAAGAAAAGAAC
TTAACTCACTTGAAAATCAACCAATTTGATTTAGTATGCTGACCTCGAACTACACTTCGGCGCCT
GAGCTTGTCAGGTTGTTCACTAGTGGGCCTGTTCGACCAGTCTCTCATTCGGTTGAGTCAAATCT
AGTACCTAAGACTCGATGAGAATAGCTTGAATTCTCCTGTGCCAGAATTGAAGTGGTACGGAACC
CATTCTATGGGACTGATACAATGGCCGGTACAAAAGGTACAACACAAAGCCAAATCGGTGGCTGG
CCAAACACATAACTTTTGCATATAGATGAAAATTGAAAAAATAAAATGGCTATGCAAATTGCACA
TTTTTAACATAATTTACTGGTAAACCGACACAGAATCTCCTTTATAATCACACATGAGCACATTT
TGAGCATGCAGCTCCGACACATGCTTCACTCTGTCATCCGGACTC
Found at i:1288319 original size:41 final size:41
Alignment explanation
Indices: 1288262--1288346 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
1288252 TCGTCTTTCT
*
1288262 GCTCTACACGTTAGTAGTGTAGAGCTCATTAGTAGTTACTC
1 GCTCTACACATTAGTAGTGTAGAGCTCATTAGTAGTTACTC
1288303 GCTCTACACATTAGTAGTGTAGAGCTCATTAGTAGTTACTC
1 GCTCTACACATTAGTAGTGTAGAGCTCATTAGTAGTTACTC
1288344 GCT
1 GCT
1288347 AGGAAAAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (41 bp):
GCTCTACACATTAGTAGTGTAGAGCTCATTAGTAGTTACTC
Left flanking sequence: Indices 1287762 -- 1288261
ATCGAATGAAAGCGCTGTTCTTTCAAACCCAGGAGTGAGTGAATTGAACTCACGTTCCCGGCTCG
AGATATCACTCGCTGCCTCAAAACCCGCTCTCGCTCGCCGCTACTCACGGGGTCTCGGTTGATTT
TCCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTA
GCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACACTCTCTCTCCCCA
TGGCCTTTCGCCTAGAAAAGCGTCCTTCCTTCTCAATGCCAGGGCATCCATCCAATGCATTCGAA
TCGTTAGCCAAAATGAAAGTTTACTGAACACCCACACAATCTCAAAAGACAAATGAAAGAAAAAG
CGCCAGATGAGTTGACTTTCCAAATTCATAAAGAAATAAGACCTATGAGTCAAACATCATGCATA
TTATGCTTCCTGGCTCTTCTTTTTGCTCTTTTGGCTCGTCTTTCT
Right flanking sequence: Indices 1288347 -- 1288846
AGGAAAAAGAAGGAATGAAAATTATACACTATATATGATACAAAAAAAGAAAAGAACTTAACTCA
CTTGAAAATCAACCAATTTGATTTAGTATGCTGACCTCGAACTACACTTCGGCGCCTGAGCTTGT
CAGGTTGTTCACTAGTGGGCCTGTTCGACCAGTCTCTCATTCGGTTGAGTCAAATCTAGTACCTA
AGACTCGATGAGAATAGCTTGAATTCTCCTGTGCCAGAATTGAAGTGGTACGGAACCCATTCTAT
GGGACTGATACAATGGCCGGTACAAAAGGTACAACACAAAGCCAAATCGGTGGCTGGCCAAACAC
ATAACTTTTGCATATAGATGAAAATTGAAAAAATAAAATGGCTATGCAAATTGCACATTTTTAAC
ATAATTTACTGGTAAACCGACACAGAATCTCCTTTATAATCACACATGAGCACATTTTGAGCATG
CAGCTCCGACACATGCTTCACTCTGTCATCCGGACTCTCCTCTCA
Found at i:1288329 original size:23 final size:23
Alignment explanation
Indices: 1288262--1288329 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
1288252 TCGTCTTTCT
*
1288262 GCTCTACACGTTAGTAGTGTAGA
1 GCTCTACACATTAGTAGTGTAGA
**
1288285 G--CT---CATTAGTAGT-TACTC
1 GCTCTACACATTAGTAGTGTA-GA
1288303 GCTCTACACATTAGTAGTGTAGA
1 GCTCTACACATTAGTAGTGTAGA
1288326 GCTC
1 GCTC
1288330 ATTAGTAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 14
0.63 0.10 0.27
Matches are distributed among these distances:
17 2 0.06
18 10 0.30
20 2 0.06
21 2 0.06
23 15 0.45
24 2 0.06
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (23 bp):
GCTCTACACATTAGTAGTGTAGA
Left flanking sequence: Indices 1287762 -- 1288261
ATCGAATGAAAGCGCTGTTCTTTCAAACCCAGGAGTGAGTGAATTGAACTCACGTTCCCGGCTCG
AGATATCACTCGCTGCCTCAAAACCCGCTCTCGCTCGCCGCTACTCACGGGGTCTCGGTTGATTT
TCCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTA
GCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACACTCTCTCTCCCCA
TGGCCTTTCGCCTAGAAAAGCGTCCTTCCTTCTCAATGCCAGGGCATCCATCCAATGCATTCGAA
TCGTTAGCCAAAATGAAAGTTTACTGAACACCCACACAATCTCAAAAGACAAATGAAAGAAAAAG
CGCCAGATGAGTTGACTTTCCAAATTCATAAAGAAATAAGACCTATGAGTCAAACATCATGCATA
TTATGCTTCCTGGCTCTTCTTTTTGCTCTTTTGGCTCGTCTTTCT
Right flanking sequence: Indices 1288330 -- 1288829
ATTAGTAGTTACTCGCTAGGAAAAAGAAGGAATGAAAATTATACACTATATATGATACAAAAAAA
GAAAAGAACTTAACTCACTTGAAAATCAACCAATTTGATTTAGTATGCTGACCTCGAACTACACT
TCGGCGCCTGAGCTTGTCAGGTTGTTCACTAGTGGGCCTGTTCGACCAGTCTCTCATTCGGTTGA
GTCAAATCTAGTACCTAAGACTCGATGAGAATAGCTTGAATTCTCCTGTGCCAGAATTGAAGTGG
TACGGAACCCATTCTATGGGACTGATACAATGGCCGGTACAAAAGGTACAACACAAAGCCAAATC
GGTGGCTGGCCAAACACATAACTTTTGCATATAGATGAAAATTGAAAAAATAAAATGGCTATGCA
AATTGCACATTTTTAACATAATTTACTGGTAAACCGACACAGAATCTCCTTTATAATCACACATG
AGCACATTTTGAGCATGCAGCTCCGACACATGCTTCACTCTGTCA
Found at i:1306441 original size:45 final size:45
Alignment explanation
Indices: 1306370--1306460 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
1306360 TATTGAATGA
* *
1306370 ATTGAAGATACTTCATCAAAGTCATTTTTTAAAGCTATTCAAGCT
1 ATTGAAGATACTTCATAAAAGGCATTTTTTAAAGCTATTCAAGCT
1306415 ATTGAAGATACTTCA-AAGAAGGCATTTTTTAAAGCTATTCAAGCT
1 ATTGAAGATACTTCATAA-AAGGCATTTTTTAAAGCTATTCAAGCT
1306460 A
1 A
1306461 GCAGCTGCTG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (45 bp):
ATTGAAGATACTTCATAAAAGGCATTTTTTAAAGCTATTCAAGCT
Left flanking sequence: Indices 1305870 -- 1306369
AAAAGGTAAGATAAGGCAAGAAATAATGACAGACAGATAGAAGGAAATAAGATAAGGAAGGACAG
CTGTATGATAAGGAAAGTGCAATAACGGAATTAGGTTAATAAAAATAAGAATGGAAATGTGGTTT
CGGGGGGCCTCCCTCTCCTTTAGCGGATGCTTTGTTAAACTCCTCCAATGGATGTCCTACTATAT
TAGTATGGAGGCCCCATTCACACAGACCAGTGACGTCCGTCCCTAATCAAAAGTCACTGGCTGAC
ACCGACCTGTTAAGCACGGAGTGCGTTTTAAGGCTTTTCAGTTATCCTCCCGGAGATGATTCACT
TTTATAAAATATATTAATCATGATGCTTCTTGAATCTATTATAACTCGATTTCTAGGAAAATCTT
TCATGCAAGTTGCTCATAACGCGGGATACCATCCTGTGTTATTTGTTTCTATTATGTGTGTTATC
TTTATTTGCTCTTAGTCTTATTATGTTACATCATATATTGAATGA
Right flanking sequence: Indices 1306461 -- 1306960
GCAGCTGCTGCTCCTTATGTAGCTTCTGTTATATGCTTTATAGGATCCACTGTTACGCTTGCTCG
TGCTGCTTGGCTAGAGGAAATTCCTGAGGATAGCGATGCTGGGGCTTCAGAACAGCCTAAGGATA
GCACTGCTGTTCCTCCTGAACATCCTTTTCCTGCTCTCTGCGAACGCCGAGGTGTTATTGAAAAA
GGGACCCCCCCTTAACCCTTAATGAGTATATTAAGTCGATTATGCGTGAATGCGCGGGCGGGCGC
AATTTGGGATATTAGACAAGCTGAAGTATCACATGATCCTGATAGAATCACAACAATAATGGACG
AACGAAAAGCTTTAATATGTAATTAACTCATTTCTTCTACGTAAGATTCAACATCCTGATAGGTG
TTGCCGTTCCACGATAGTGCAAATGGGTATGCTCAGGGATGAGCTCTTTTTGGAATAAGGCTAAA
AACCCGCTATATAAGGAGTAAGGGTAAGGCATAAAAAAAGTTATA
Found at i:1316016 original size:33 final size:33
Alignment explanation
Indices: 1315974--1316041 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
1315964 GGTTCAGCAG
*
1315974 ATAAGTATGCAGATCCAGGGTCAGCCGATAAGT
1 ATAAGTATGCAGATCCAGGGTCAGCAGATAAGT
* *
1316007 ATAAGTATGCAGATCTAGGTTCAGCAGATAAGT
1 ATAAGTATGCAGATCCAGGGTCAGCAGATAAGT
1316040 AT
1 AT
1316042 GTTCCCGGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (33 bp):
ATAAGTATGCAGATCCAGGGTCAGCAGATAAGT
Left flanking sequence: Indices 1315474 -- 1315973
TTGTCGTGTCTCCCGTTCATCTACATCTAAAAAGAATGTTGATTCAGCAAGAAAGACGGATGCGC
TAATACGGCTTTCGCGCAGCCTTTGGGTGGGTGGAAATTATAGTTCGAATTAATTGTATGATCAA
AGTTGTCTATCTAATGGGAATCGCGCTTGATCGCCTCTTCCTCTTGGGGTCAAGTGAATCACCCT
TCGGAGCGGTGCAACCAGCGGTTTCTTATCAAATTAGTTTAGACAAACCCTAAATCTGGCTACGG
CTATCGCCTTGCGGATAGCACCTTTCGCAAAATAGGCATAAGTAATGAGGGACGGCGGAAGACAA
GGCCAAATAAACCTGACCGGTGAAGCTATTTCTTTTGAGCCTCCCTCTCTTAGTCTTCGAAACTC
TTCTTTTTCTTCTCTCTCAGTAGATTTATAAAGTAATAACTCCGCACGCCTAGCTTCTTCCGTAA
GCAACTACTGCTAACAAAGCAAAGCTTAATCAAGCGGTTCAGCAG
Right flanking sequence: Indices 1316042 -- 1316541
GTTCCCGGGGTTTTTTTCTTGGATCACTGGCTAATTCAATTCCTCGCGTAAAGTATATAGCTGAA
GGTTGACCCTTTTTTTTATGTTGTAGAGTCAAAGTACTCGGTCAACTCAGAATGAATTTGATTCG
GGAGCATCAGCATCAAATCGACTAGTAGAGTCATGTGATCCCCCGGCCCTAGTTATCGACTTGCT
TGCTCTGACCTTGCTTAGTTGAACGACACGGCCTCGTGTGATCTATTCTTCCCAGCAAGAACGGA
TAAAGTCAAGTAAAGTGGATAGCTCGAGAGGGTTGCATGCTTGCCTCAAGGATTGCCTTTTGAGC
GAGTTCGCTCTTATTAGGAAGAATGCAAGTAGTGACCTTACCTTAATTAAGTCGCTAAGTGCCCC
TTAGGCTTTACTACTTTTGGGCATTATACGCAATTTATGAGATAAACCCGGCCTGGTCTCGCTGG
TTAGTTTCATCCGCCATAATAAGTAAGCATAATCAAAGTTCACAA
Found at i:1318970 original size:19 final size:19
Alignment explanation
Indices: 1318935--1318994 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
1318925 TCCTGCACCC
1318935 AGCGAGTAACGTA-GGCACG
1 AGCGAGTAAC-TACGGCACG
*
1318954 AGCGAGTAACTACGGCATG
1 AGCGAGTAACTACGGCACG
**
1318973 AGC-TCTACACTACGGCACG
1 AGCGAGTA-ACTACGGCACG
1318992 AGC
1 AGC
1318995 TCTACACTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
18 4 0.11
19 31 0.89
ACGTcount: A:0.30, C:0.27, G:0.30, T:0.13
Consensus pattern (19 bp):
AGCGAGTAACTACGGCACG
Left flanking sequence: Indices 1318435 -- 1318934
CAACTGGGACGAGGTGAACATCACCTTTTAACCAATTTCTTAAAGGATCCACCCAACTGGGTTTA
TTATCTATGTCCATGACATCAAGGACATTTGTATCCTATATTTCTGGTATTTTTTTTTTACCAAA
AATACATCTTGTGGTATACCTTGTATAAAACCACTAGCACATTTAGCAATATAATCAGCTAAAGC
ATTATCCTTCCATGAAATCTTTTCCATCTTAAAATTGAAATCTCGTAACAGGAATTTCACCTTAC
CTAGGTATTTTGCCATCACCGGATCCTTTGCTTTATTAAACCCATTGACCCTTATTCACAATTGA
TTGTGAATGAGAATCCCCTCTTATTTAGATGTTCTTGACTCCAAATTCATGAGCCTGTTTGAGTC
CATGGATCAAGGCCTCATATTCCACCATGTTGTTTTAAGCAGTGAAGGATAGATGTATTGCGTGC
TGAGTATCAAATCCATCAGGGGACTTTCAAACTATTCCTGCACCC
Right flanking sequence: Indices 1318995 -- 1319494
TCTACACTACTAATGTGTAGAGCCAAAAAGAGCCAGGAAGAAGTAATGCCTATGCCAAGCAAAGA
TCTAGTCCAGCCAATGCCATACTTGACTCAATTTCCTCTTTCCTACTTTGGTTCTACTTATTACT
GAAATTGCCTGAATTTCCTTTCTTTTTGCGTAGTCTACCCGCCATACTTGCCTTTTGCCTTAGGA
AGACTTTCTGTCAATTACTATTTTTGACGAGAGACCGTGTTTTTTGTAATAAATGCTATTTGCCT
AAGGAAAACTAATTGGAAATGAAAAAAAAAGTAGTACTTTTCCATATATATGAAACAAACTTTCC
ATCAATTTTAAATAATGTTACCGAGGGAGAATCACTGTGATAACTTTGACATCTATATTAGATAA
AAACACAAGCAGAAACACATATCTACTTTGCTTATCTAGTAGTCCTACTCTGACTTCCCCTAGCT
CCAAGCACTACTTTACCTAAGCTGCTTCAAGTCCAAGATGTTTAC
Found at i:1318995 original size:19 final size:19
Alignment explanation
Indices: 1318962--1319004 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
1318952 CGAGCGAGTA
*
1318962 ACTACGGCATGAGCTCTAC
1 ACTACGGCACGAGCTCTAC
1318981 ACTACGGCACGAGCTCTAC
1 ACTACGGCACGAGCTCTAC
1319000 ACTAC
1 ACTAC
1319005 TAATGTGTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.19
Consensus pattern (19 bp):
ACTACGGCACGAGCTCTAC
Left flanking sequence: Indices 1318462 -- 1318961
TTAACCAATTTCTTAAAGGATCCACCCAACTGGGTTTATTATCTATGTCCATGACATCAAGGACA
TTTGTATCCTATATTTCTGGTATTTTTTTTTTACCAAAAATACATCTTGTGGTATACCTTGTATA
AAACCACTAGCACATTTAGCAATATAATCAGCTAAAGCATTATCCTTCCATGAAATCTTTTCCAT
CTTAAAATTGAAATCTCGTAACAGGAATTTCACCTTACCTAGGTATTTTGCCATCACCGGATCCT
TTGCTTTATTAAACCCATTGACCCTTATTCACAATTGATTGTGAATGAGAATCCCCTCTTATTTA
GATGTTCTTGACTCCAAATTCATGAGCCTGTTTGAGTCCATGGATCAAGGCCTCATATTCCACCA
TGTTGTTTTAAGCAGTGAAGGATAGATGTATTGCGTGCTGAGTATCAAATCCATCAGGGGACTTT
CAAACTATTCCTGCACCCAGCGAGTAACGTAGGCACGAGCGAGTA
Right flanking sequence: Indices 1319005 -- 1319504
TAATGTGTAGAGCCAAAAAGAGCCAGGAAGAAGTAATGCCTATGCCAAGCAAAGATCTAGTCCAG
CCAATGCCATACTTGACTCAATTTCCTCTTTCCTACTTTGGTTCTACTTATTACTGAAATTGCCT
GAATTTCCTTTCTTTTTGCGTAGTCTACCCGCCATACTTGCCTTTTGCCTTAGGAAGACTTTCTG
TCAATTACTATTTTTGACGAGAGACCGTGTTTTTTGTAATAAATGCTATTTGCCTAAGGAAAACT
AATTGGAAATGAAAAAAAAAGTAGTACTTTTCCATATATATGAAACAAACTTTCCATCAATTTTA
AATAATGTTACCGAGGGAGAATCACTGTGATAACTTTGACATCTATATTAGATAAAAACACAAGC
AGAAACACATATCTACTTTGCTTATCTAGTAGTCCTACTCTGACTTCCCCTAGCTCCAAGCACTA
CTTTACCTAAGCTGCTTCAAGTCCAAGATGTTTACCCATAACAAT
Found at i:1320907 original size:23 final size:24
Alignment explanation
Indices: 1320861--1320910 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
1320851 ACTCTTGCCC
*
1320861 AGCGAGTAACTACGGCATGTTACG
1 AGCGAGTAACTACGGAATGTTACG
*
1320885 AGCGAGTAACTAC-TAATGTTACG
1 AGCGAGTAACTACGGAATGTTACG
1320908 AGC
1 AGC
1320911 CAAAAAGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (24 bp):
AGCGAGTAACTACGGAATGTTACG
Left flanking sequence: Indices 1320361 -- 1320860
AAGCTTACACAGCGTAAGGTTTCCTCAAAAAAAGCACGAGCTGAGCGTCTGAAAGCAGGCACGCG
GTGCGATTAGTTTCTTTTAGTTTCGAGTGAGGGAGTAGAGTAAAGAATTAATAGATTTTTCAGAA
GTAATACATATTATTCGATAGGAAATCATAGAAGAGAAGAGAGATGAGAACAGTTTCGTATAGTT
TCGTTGAGGTAGCTATGGTAGAAGAAGAGAAGGCTTATACCGGAGTAAGAAAAGAAGAGAATACA
TTCACAACAGACAGAATCGAGGTTAGTTTGCCCTATCCCGAATGCCCATACCTAGCCACCCCATT
ACCTTTTTTTCCTTAGCTTCCAAGCGCTATGCCAGGTAGCTGAGACCTACTTTCCGCTATCCTTA
TGCTTGTTTGGAACTCCCCTACTACTATGTTTAGTAATACGCTGGCAATGCCAATCGCTACTCTT
TCCCCGTTGTTTCCTAATCGGTCACTGTAACTACTACTCTTGCCC
Right flanking sequence: Indices 1320911 -- 1321410
CAAAAAGAGCAGAAAGACGAGCCAGGAAGCGTCTTTCCCACCTGCCCTAGCCAGGTCTAGAGCTA
ATGAGTAGGAACTATCCATCTATCTCCAAGGATAGGAAGTTTTATAAGCGGAGGCAGGATTATTT
AAAGCTCGCATAAGCACCTCTTTTTTTTTTGCTCGAGAGGAAGGCCCATTCTAGATAAGGCAAGG
GCTAAGTCAAAAGCTAAGTAAAGGGATCCAATAGAGAAGGAAGGACGGATGCCTTTTTAAGCCAC
AAGCAAGCTCTGCATATCTTTCTTCTAAGGGGGCTGCTCGTGTAGCTAACCACTCAACTACATCT
TTCTTTCGTGCAAGAGCAACCGCTTGAAAGCAGTGAGTTTACTTCACGTGCTGGGACCCTACTCC
CCTTATGTGGAAGGAGGCTCCCCTAACCACTTCCATCCCAGTGATCACTTGCCCATTGGCGCTTA
TTTCGAGCTTATCTCCATTTCTTAGACCCAGCGCTGGGCCTTTCT
Found at i:1323189 original size:14 final size:14
Alignment explanation
Indices: 1323170--1323197 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1323160 GAGTATCTCG
1323170 TCTGCGTACCTGAT
1 TCTGCGTACCTGAT
1323184 TCTGCGTACCTGAT
1 TCTGCGTACCTGAT
1323198 GTAGTAGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.21, T:0.36
Consensus pattern (14 bp):
TCTGCGTACCTGAT
Left flanking sequence: Indices 1322670 -- 1323169
CTTTTTTGAAGAGGTGTGGTCTATCCAAATAGCTAGAAGCAGAACGATAAGAAGCTCTGAGACTA
TTTAAAGGCTTATTCGAGCCAGTCTAGTAGGCATCGCTTTCTATCGGAACCGTTAGCCTCGCCCC
ATAAAAAAGCTATAAATCTTATTTCTTTCCTGATAGTAGTGAAAGTAAAGCTGTTTCCTTCTCTC
CTTGCAGTCGAGCCTATAGCCTATTACTAACCTTTTTAATCTTTAAAAAATGAATGCATGCAAGG
TTGACTCTTCAGTCTTCGGCAGGAGGAGAAGTGGATGAACAAGGAATCCTTGATGCTTCTCAAAT
GTCTTGAAGAATGCTAAATGTGAGATAAAAAAAAGTAAAGTAAAAAAAAGTTCACAGTGAAACTC
CGAGCCGAGAGGGAAGTCTTAATTCCACTCCGATCTTAGTTAGCCGAGTAGCTTGTTTTTTCTTG
CTTCCACACTTCATCATAGGTTCGCGAAAACCGAGGAGTATCTCG
Right flanking sequence: Indices 1323198 -- 1323697
GTAGTAGAGTTTGATTGCTTTTTCGATTCCTTTTCTGTGCCCGGCGCTGCCAATATGAGAGTACC
CCAAGTGTTTGTCTAACAGGTGGGAATAAATTCATTAGAACCGGCGAGATTGGGCTCCGGTATGC
CTTTATCGGTGCATGCATGATTCACTCCCTCCCGATCCAGGCCGTGACCAGGAAGGTTTCAATCA
ACCAGTTCCACGAAGTCAAAGTTTTCCTTGCCAAACCGATCTAGCAACAGTGCTAGGAGAAGCGT
GTGATCTATGTTATCGAAGCACCTGACTATATCGCACTTGACAAGCCAATACATTTGAGGCCGAA
ACATCGCTCGCTGAAGAAAGTCCGAGCGCCCGACCCATGCGATGCACGAAAAAAGACAGGCTAAA
ATTCATCGCGGAGCAAGCGGGCCATTGCATCCAAAACAAGTCTGTCCTTATGAGCTGGCTGCGTG
ATAGCTTCAAACTTGCCCGGCTTCTTTGGAACAGGAATGTCTGAT
Found at i:1342835 original size:12 final size:12
Alignment explanation
Indices: 1342818--1342842 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1342808 GAATCTCAAG
1342818 AGTATGCCGGAA
1 AGTATGCCGGAA
1342830 AGTATGCCGGAA
1 AGTATGCCGGAA
1342842 A
1 A
1342843 ATAGCTTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (12 bp):
AGTATGCCGGAA
Left flanking sequence: Indices 1342318 -- 1342817
GGGAGCACGACTTGCCTTCAATTTCGAGAAATATGAGTCCATTCCTTGTCATTTCATTGAAATTA
TATAGGGCCTTAAACTCTATTTCCTTGTTGGGTGGCATCCGTTCTCGCACTGAAGAAAGAGAAGG
GGTAGTTGGACTGAAAAATCAAGTATACCCCACCAGGTGAATAACAACGACTTGTTCTATCAAAC
GAAGCGTTGGAAGTAATTCCTTGACCTCAAACTGAAAACCAAAGTACATGATCTGAACCACAAGG
CCAAGTGCGCTACATGCTAGAGTGATGTCAAGAAACTCTTTCGATTAAGTAAGGCATATTAAGTC
CCTATTATTAAGTAAGAAAGGAGAATTGCCATCTAGATTCTTTGAACACTTTCCTCCTTGTGACT
CTAAACAAGTAGTTTCGAAATGACTGAATCAAAATCTCTGATTATTCTATTGCATCTATGGTGGA
ATTGGTAGACACTGAAAGATCATTTCTGAGTAATTGAATCTCAAG
Right flanking sequence: Indices 1342843 -- 1343342
ATAGCTTGCCGGTTGGAGGCATAACATCTATATTAATTGTTCAATCTAGAATTGGTTGGATTGAA
ACTAGGTTAGGTTATTATTTAATAATGACTTTTTTCCACTTATTAATTTAAATAGAACTTGATTC
AACTTATTTACTTTCACGATGAGATTCCTTATTTTTCCTTTGCGAAGAGATCGATTGGTTTTTCA
TAGCAGCTAGATGATTCCTTCTTTTTTCCTTTTTTCTTATTTGAAATATTTGTTTGTTTGCTGGC
ACAGGTGGTATAGGCATTATCCACTCCTGCAGATGTATAATCTGAAAGGTGGAAGGATCTTTGGC
TATTGGCTCAGCTGTTAGGACAAAGACGGTGGATAGGCTGATCTTAATACTCTTGCCATGGTTCT
TGTGAAAGAATAGGCAGGCTTTGAGGCAACTATTGAATCCGCCTTACCAGATTCCGATGATGTTG
ATGCGTGGCGGCAAGAAGAAGGAGCTAGAGTGCTTGGCTTAGAAG
Found at i:1343949 original size:15 final size:15
Alignment explanation
Indices: 1343929--1343957 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1343919 GTCACAACTG
1343929 TCTACTGCTCTACTT
1 TCTACTGCTCTACTT
1343944 TCTACTGCTCTACT
1 TCTACTGCTCTACT
1343958 GTTTACCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.07, T:0.45
Consensus pattern (15 bp):
TCTACTGCTCTACTT
Left flanking sequence: Indices 1343429 -- 1343928
GGAAAGATCCGAGTAAAAGGAAAAAGAAAAGTAAGCCATATTAAGCCCTTACTCTATACTGGCGG
TATGAAAGTAAGAGTAAACTAGCCATCCTTCTTGAATCAAGTAAGTTAAGGCAATGAATGGCCCT
GGGAGGAAAAGTGCTTAATCAATGCAAGAAAGAGGGAAAGTCTCGACATTATTGAATGTTGAAAG
CAAAGCTGAAAGAACTCTAGTCTCTGTAGCTAGACCATGGACTCCGCCACTCTGGTGGTGATTTT
TCACAGAAAGAAGGTACCTTACATAAGGTCAATGGGTTCTTTCAATAGCAACTTTCCTCTATAGT
CTGAAGTATTACTTTAGAAAGCAAACTATTCTTTGCCATTTAAGTTCCCAATGTTGATGTACCGG
AACCGCTATTATTGTTCACAACTGGTGATTCAAGTCGTTTCATACTAATAACGCATTTCCGTGTT
GGTGTCATATATGACTGACAAAAGATAAGCTACTTGTCACAACTG
Right flanking sequence: Indices 1343958 -- 1344457
GTTTACCTATTGTGTCGGCGTTTTGCTCCATATAGAACTTTCTTTATTTGTCGGTGTTTTTTACC
AGAATTCAAAAAAGTACCATTTCGCCGACTAGCCAAGCTTATCTTGGGAGGAATTTTTTTATATT
CTAGAAAGATTGGACAAGGCTTACCGGCCAGCTGTATGTAGATCGGTGAATCTCGGCGCATTTGC
TGCTCCAGGCAAAGCTCCTGTTTAAACGGGTCTTAAAGAATTTCGTATGATAGAAACCAAGTGTA
AGGAAAACCTATGATGATTATGCATCATTTCACCGATTGATTACGAAGTAGACGGCGAGACCATT
TCCTTTTCAAAAGGGAAGCCTTTTGTTGGGACGAAGGAGAGCCGCTAACTTCTATGGTTTAGGAA
ATTCGAAATATGATTACCCCAGCCCCTTACCTATGTCGATCTTGTATTGGTCCTGCCCGCAGGGC
TGCTGCCGCTAATGGAAATCCTGTTCCCGTGTAAAGAGGTTCTTT
Found at i:1356040 original size:30 final size:30
Alignment explanation
Indices: 1355994--1356050 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
1355984 CCACTATCGA
*
1355994 TGCCTAAGAGTAGGTCTTTACCAGCTTTTC
1 TGCCAAAGAGTAGGTCTTTACCAGCTTTTC
* *
1356024 TGCCAAAGATTAGGTCTTTACCGGCTT
1 TGCCAAAGAGTAGGTCTTTACCAGCTT
1356051 GCCTAATAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (30 bp):
TGCCAAAGAGTAGGTCTTTACCAGCTTTTC
Left flanking sequence: Indices 1355494 -- 1355993
CAGCCTAAGAATACTAATAAATATTCAAGTACTTTATGCTCAATTCTGTATAGCAATCAATGTCT
GAGGGCATAGAGAACCTTAAGAGGATAGGAAAGAAAGTCTATTTATTTGAGACCTGTGAGGTCAG
AAATTCAAGCATTCGGGTAAAGACTATAAGGCGCTAGAAGGCCATACCTCAAAAGGCTCGCTACC
TTCTCTAGATACTTTATTGGAAGAGAGGGTAGATGTAAGAGAGTTCAAGCACTTCGCTGGAAGAA
GGGTATAATGGAAAGTCAATCAATATTTCATCCTGAACTAAATAGGTCATTTACGACTCAATGGT
TTAGAAATCAAATACATCAGCATTCCTCAATACTACCCTTATAACCTCACTCTTTGACTTAGAGG
GCCCCACCTTGACTTATATCTTATCCGTATACTCTTCCTTACTTCCCTTCTCCGGCCATGCGGTT
GAGGATATTTTCAAATAAGAAGAAATTGACAATACCCACTATCGA
Right flanking sequence: Indices 1356051 -- 1356550
GCCTAATAAGAGTAGTTTAATACCGGCTGACTTGTACAAGCTTATATTCTAAGAGTGAGTACGCT
ACCTTATTGATTATTAGAATAAGAAAGATATTTATTTTGAAACCTTCCTGGTGTCATTTACTTGA
ATAAAGAAAATCTTAGTAAATAAATGTGGGTGATCCAGAATAATACTTCTTTTTTGGTGCGAGGT
ACTAATATAACTCAACTTTATGCGTATAGGAAGGCGGCTGCTTAGAATGCTAAACAGGCCTACTA
AAAGGCTTATGCTAGAACAAGTCAAGCTCAACAATGCTTAAGCCCAAGGAATGGATGCGTTAAAG
ACTGGAAATAGAGAGTTTATCTCAACCTAACCTATGCAAGCACTTATCCCCTTGCCTTGGATTAG
GCACAACAACTATATGTTACTTATAATCTGACCAGTAACTATACCTTATGAAAAGTAAGCACTAG
CTATATTAAGAACTATATAGTCTCGAGTAAGTAAATAGATCAAGG
Found at i:1373625 original size:34 final size:35
Alignment explanation
Indices: 1373581--1373647 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
1373571 GCATACTAGC
*
1373581 TTGATGTTCGTATCGAGCCAATTGCATATTATCTA
1 TTGATGTTCGTATCGAGCAAATTGCATATTATCTA
* *
1373616 TTGAT-TTCGTATTGATCAAATTGCATATTATC
1 TTGATGTTCGTATCGAGCAAATTGCATATTATC
1373648 CTAAATGAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 24 0.83
35 5 0.17
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (35 bp):
TTGATGTTCGTATCGAGCAAATTGCATATTATCTA
Left flanking sequence: Indices 1373081 -- 1373580
GGAGAACTTCAATCGGAGAAAGCCCTAAAAAACATACTTTGTTATTACGAGGGCGCAGTTCGTAT
GTATGCTGCTGCTCGCAGGCATGGTTATGTTTAGTGAGAGCTTCCTAGATTAGCCCAGTGGAATG
GAATCGAGAGAGTTCCGTTCTCTTCAAAAATAAAGAATAGAAGGATAAGGTAGAGTTTCCCATGG
GTCTGTTTATTTTCTTCTTTCTTTTCTTTACTTATCTAGTTGTGGGATCTCAGTGCATCTCTGGT
CAGAGTCATCCGGTTAGAAGTATGACTGGTGCTGCAATCAATCACAAGTGGTCAGGGAGGTCTCC
GTCCAGGCTTCCCCTACTAGTAGAATGCTTCAGGTCTGTGCTCTGCTCCCGGATCTTGATGACAA
TTAATAACTCTACACTTGGGCAAGGTAGGAAGATACATTGGCATCTGGATCAATCATCATTATGT
ATTATTGGGTTGACATTGTTCTTGGCTTTTGAAGGGCATACTAGC
Right flanking sequence: Indices 1373648 -- 1374147
CTAAATGAGGAGGAGGGAGTTACGTCACCACCGTTCAAAGAACTCTTGTTGGATTTCAAAGAGAC
ACCCAGCGAGTAACTACTAACGAGCTCGTAACTACTAATGTTACGAGCAAAAAGAAGAGCGAGGA
GGCGAGCCTCTCGGGTCGAAAACATTAGGCACCAAGACGAAAGAAATTGATAAAAAAACAAAGGC
CCGTGCCTTCGTTTCACTCGTATCCATGTAAGAGAATGCGCTGCTACTCTCAACTGAGCAGGTTG
GTATATTCGACCGGATCTAGTTACATCGTTGATGGAAATAGAGGTTGAATGCAGCTCAGTAAAAG
GCACGGATGAATTACGTACGAAATGTGGCAGTCTTTATTTTTTTTCCCCGTCCATCTCCTCTTTA
TTATTCGCAGAAAAAAGTGCTTACTAAATATAGTCAGTTGACTCCAGTTTGCCAGGAATTCCTTT
AGGCACTTAAAAAAGCTTAGCAGATGAACGAGGAGAGCTGGCGCT
Found at i:1376803 original size:10 final size:9
Alignment explanation
Indices: 1376783--1376815 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
1376773 TCGTCTTCAT
1376783 CTACTCCAA
1 CTACTCCAA
1376792 CTACTCCCAA
1 CTACT-CCAA
1376802 CTACTCCAA
1 CTACTCCAA
1376811 CTACT
1 CTACT
1376816 ACAAACAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.30, C:0.45, G:0.00, T:0.24
Consensus pattern (9 bp):
CTACTCCAA
Left flanking sequence: Indices 1376283 -- 1376782
TTTCTTAAGCAATGCTTGGCTTATAAAGCACTTAAACGAGCCCCATATTAAGACAGTCGAGGTGC
AAGCTTAGACAAGGCGCCGGCAAAAAAGTCCCGGAGCTTCTGGGTGGATTGCGAAGCTAGCTCTT
GGGCGAGTAGGAAAGCTAGGAAAAGGGGAAAGGTGTAAAAAGGTCAAGCTCGGAAACCAGTATTT
TTGTGGCCTGGTGCTTTAAGTAAGTTCAATACATTGCACGCTCCTCTGTATCTTGCCCTGCTTCC
TTATACCATTTCTTGGCTTCACTTAAAAAAAAGAAAGATCTCAAAATATCTTCAGTGATGTGGCG
GTACTTTCTCTGAGCTACGACTCCTTATCTTTACCAAGTCGTCCATCTTGTTCTTCTTACTCTTC
TTTCTTTCTTCTTTTCTTTTTCAGGATTCAATCCAGCCACACCTAAGTGAAGAGATTAGAATCTC
TCGCTTGCCAAACAAATATGTGATCTTTCATTATGTCGTCTTCAT
Right flanking sequence: Indices 1376816 -- 1377315
ACAAACAAATCACCTATTCTCAATATTGCACCTTTTGGAACATGTGAACCCGAAAAGATGTTCAA
GATCAAATAACCTCGGAAGTACTCTTTTCTAAGCGGACCATTCTCAGTACAAGACTAAGGAATCC
GTTTTTGATGTGGTAGGTGATTGTGTAGTGTGCAGTCGCATAGCTGTATCGGGTGAACCTTATGG
TGAAGAAGGGAAGGATGAGGGAGTGTTATATCATGTTTTGATAGAATTATTCCCTAGTGGTATTC
TTTGGCCACAGTGTATTCTATCCTGAAGAGAAATCTTTTGGGTGTTGGTGAATTCGTTGTTGTTC
CACTTCATTCATTCGGTAAGGGCTTGCGTAAGATTATGGCTTCTGATCAAGCTCCTTACTTCTTC
AACTATACACTCCATAAGGCGAACATGATGTTCGACCTGATGAAAGTTCGAAAGAGTTACAAGCT
CTGGGATTTTCCAGACACGGGTGCTGTAACTACTAAGAAAGCTGT
Found at i:1397659 original size:13 final size:13
Alignment explanation
Indices: 1397641--1397691 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
1397631 AACGTTCAAC
1397641 CATACACTATTGA
1 CATACACTATTGA
1397654 CATACACTATTGA
1 CATACACTATTGA
* *
1397667 CAGAC-TTA-TGA
1 CATACACTATTGA
*
1397678 CATAAACTATTGA
1 CATACACTATTGA
1397691 C
1 C
1397692 TTACGAGACG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
11 6 0.19
12 4 0.13
13 21 0.68
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (13 bp):
CATACACTATTGA
Left flanking sequence: Indices 1397141 -- 1397640
TATGGAATGTCTAAATATTTTTTGCCCATGCCACATAAACAAATTTCCAAATTCGCTTTGAAGCA
GCAGTTTCAAAGACCAATAGAAAAAGAGCATTCGCTATGCCGCCCAATAAGTAGGTTATCCAGCC
AGATAGTTTTCCTTCATTCTCATTTGTTGAGTTGCGAGAATGGAAGAGACGGGACTAGTCAAGTT
ATCTATTGAACAAGGAAAAGCCCAAACCGGTTGCCCTTTCGTCTCCCTCTTCTTACCATTTGAAA
AAGTCCTGCCTACTCTATTCTGATTTGCTTCAAGCTCCAAGCTCTTTCCAAGCTTCACTCAGAGT
CGTTCCGTTCCTCATCAACCGTTCTTCTCCATCTTCTCTCGTTCCTCAGATATCCCATTCCACTT
TGAGGTGAAACGGCGCCTTAGGTTCCAGTCTGGATAATCCTAGATAGGTGTCTTCCCAATCTTCT
TCCGATCAATGTAAGTTCCTCCGACTAAGCCACTTAACGTTCAAC
Right flanking sequence: Indices 1397692 -- 1398191
TTACGAGACGTCACTTTGACTTGCTTCTACTGTAACGTACTGGCTTCTTTCTACTTTGACTTGCT
TCTATGGTAGGTAACGTACTGGTTGGTAACGAAGGTTTTGAACAGCTTTCTTTCTTGCTTTGATG
CTTGATACACTAACTGTTCCTATCTGTGCCTATTGAATGATGTTTTTGCCTCAGGTAGACTATTA
AGAATTTGTTTGTTATCGTGCAGAAGATCCTGGGTCAGTTAGGGACTCAGTCCAGAAACTTAATG
TATTGGGTCTCATCAAAGCTATCTTCGCTCACCCCGGTCCTTCCTTCCTCTTTCCATTCGGTACC
TAACTATTTCCTTCCATATTGAATAGCTTTTATCGGCACTTCTTCTTTTCCTCTGCTTTCAACAC
CTTACCTCTATTTTGAGATCAAAGCAATACCAGCAACTTTCAAACAAATTGACAGGAGACCGCTA
TATATGGTATTGAGGTCAAGCTTTGAGAGTTCCTACTTTGAAGTG
Found at i:1403428 original size:17 final size:18
Alignment explanation
Indices: 1403406--1403452 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
1403396 AACCTTATAG
*
1403406 AGAAAAAAGAATCCA-TT
1 AGAAAAAAGAATACATTT
**
1403423 AGAAAAACCAATACATTT
1 AGAAAAAAGAATACATTT
1403441 AGAAAAATAGAA
1 AGAAAAA-AGAA
1403453 CATGTGTGCA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 12 0.52
18 9 0.39
19 2 0.09
ACGTcount: A:0.62, C:0.11, G:0.11, T:0.17
Consensus pattern (18 bp):
AGAAAAAAGAATACATTT
Left flanking sequence: Indices 1402906 -- 1403405
CCCAGCAGTGCTGCCTTTCTTTTAATTGTGTAAGTTTGGTATTGGTGTGGGTAGGGTGCAAACTA
GAAAGTTTAGCAGTCTGTCAAATCAATAGTTCAAAGATGTATATGTATTTAGTATTACAGACCAG
TACCAGGCCTTACTTTCATTGTACCAAGATGTTATGATAATACAATACCATTAGAAATCCTGTTG
GCTATTTTAAAGGAAATTTATTCGAGAGAAGAGATTGAGGTGTGGCTTGATGTGCCTCTCTTGGC
TCGATAGCTATGCGAACAATACCATGATCCCAACAAATTGAGAATTACAGCTGAGAGGCAAACGG
GATAAAATCCAAATGAGCTGCTATGTATCCCCAACTAGTGCATCTCCAACACACTTCAACCTTCT
GATCTAGAGTGCTTCAGCACCTTGGGATCCTAGATAGAGCAAGAGAGATGAGTCAACCAATCCTA
GTTAGGCTTCTACACTGATTTCCTAGTGACATTAAAACCTTATAG
Right flanking sequence: Indices 1403453 -- 1403952
CATGTGTGCAGAAGAAAACGATGGCAGGAGAACAAATATAGATAGGGTAAACAGGAGTGCGGATG
TACAAACTACCATTTTGAATAAAGAAATTTCAAATAAATAAGAAGAAATGTAAAGGCAATCAGGA
GCCTATTTTTTAGCTCTTTAATATATTGTATAAAGACCAGAAAACCTTGTAGGAAGAGTTCATCT
TTCTTTAACTCAAAAGGATTAATATGAAAAGCTTAACAAATATAAGAAAATACTTATCTCTCACT
GATAAGAGTAGGAGTCAGTACTTTCTACCAGTCTGGTACCTGTTAAACGAAGTCTCCTATTATTA
TTGAGCTGGGTAACATACGGGTTTATCAAAAGCTCAATGGAAGTAATTCCAAACATTCTCCTAAA
GTAGTAACAGTAATCATACATGCTAAAAAGAAATCAAACATTCGCAGACAAAATCTCCCAAAAAC
CAAGAACCAAAAGGCTGCTTTAACCAATTCAGTTAACAAAGATTT
Done.