Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_061056
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 162460
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 2
Found at i:54379 original size:13 final size:13
Alignment explanation
Indices: 54363--54389 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
54353 TATACTACTT
54363 TTACTTTATTTTA
1 TTACTTTATTTTA
54376 TTACTTTATTTTA
1 TTACTTTATTTTA
54389 T
1 T
54390 ATTATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
TTACTTTATTTTA
Left flanking sequence: Indices 53863 -- 54362
CAACAATTAGGATAAGCACGAAAATTAAAGCTTCTATAAATACAGATACCCCCAATACATCGAAA
CTCATTGCCCAGGGATAAAGAAAAACCGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACAT
ATAATAACGGATTCGAAATTGTAACCAAGCATCGCCCATTGGTTCTATGCCCGATTCATAACTCG
AAAGTTTCTCGGGCCCTTTGTTAATCGGGGATAAAACTCCGGAAATTATAAATGCCAAAATAGGA
ATAATGCTTGATATTATCAGAAATGCCCAGAAAATATCATATTCGTAAAGCAGAAACATAGGTGC
ACTCCTATGAATGTGAAAAATATAATAGAAAATATACTAGATTAGTCGAGTTGAATTGAAATTAA
TTGTCAACTCATCCATAACTGTTTAGTCAAAACAAGAATTTTTTTTTATTATTATACCTTATATA
CTACTTTATTTTATTATATTTATTATATACTACTTTATACTACTT
Right flanking sequence: Indices 54390 -- 54889
ATTATATTTTTTTTTATGTTTATAACTAGAGTTTACAATTCTAATCATCAAATAGAATCATCAAA
GGAGAGAGACTCCTTTCTTTTATATATTATATATGGTTTCTTATTAATTTAAAATGGAATGGAGG
AAAAAGCCAGATGTCGGAGAATGTCTAGGAATTTTCATCTTACAATTTAAAGTTAGAGTATAATG
TGGTGTTGGTATATTCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATC
GATAAAATAATAAAATCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATAT
CGATAAAATAATAAAATAAATCTATAAAAAAAAAAGAACTCTATAAAATAATAATATAAAACAAT
AATAAATTATATTAAGTTCTATTAAGTTCTATTAAGTTATATAGAATTAGATATTAATATCTTAA
TATGGATTAATATATAGATTAATATGGGCTTATATTGATTGAATA
Found at i:54388 original size:18 final size:18
Alignment explanation
Indices: 54362--54412 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
54352 TTATACTACT
*
54362 TTTACTTTATTTTATTAC
1 TTTATTTTATTTTATTAC
* *
54380 TTTATTTTATATTA-TAT
1 TTTATTTTATTTTATTAC
*
54397 TTTTTTTTATGTTTAT
1 TTTATTTTAT-TTTAT
54413 AACTAGAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTATTTTATTTTATTAC
Left flanking sequence: Indices 53862 -- 54361
CCAACAATTAGGATAAGCACGAAAATTAAAGCTTCTATAAATACAGATACCCCCAATACATCGAA
ACTCATTGCCCAGGGATAAAGAAAAACCGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACA
TATAATAACGGATTCGAAATTGTAACCAAGCATCGCCCATTGGTTCTATGCCCGATTCATAACTC
GAAAGTTTCTCGGGCCCTTTGTTAATCGGGGATAAAACTCCGGAAATTATAAATGCCAAAATAGG
AATAATGCTTGATATTATCAGAAATGCCCAGAAAATATCATATTCGTAAAGCAGAAACATAGGTG
CACTCCTATGAATGTGAAAAATATAATAGAAAATATACTAGATTAGTCGAGTTGAATTGAAATTA
ATTGTCAACTCATCCATAACTGTTTAGTCAAAACAAGAATTTTTTTTTATTATTATACCTTATAT
ACTACTTTATTTTATTATATTTATTATATACTACTTTATACTACT
Right flanking sequence: Indices 54413 -- 54912
AACTAGAGTTTACAATTCTAATCATCAAATAGAATCATCAAAGGAGAGAGACTCCTTTCTTTTAT
ATATTATATATGGTTTCTTATTAATTTAAAATGGAATGGAGGAAAAAGCCAGATGTCGGAGAATG
TCTAGGAATTTTCATCTTACAATTTAAAGTTAGAGTATAATGTGGTGTTGGTATATTCTTTTTAT
TTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAAATCTTTTTA
TTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAAATAAATCT
ATAAAAAAAAAAGAACTCTATAAAATAATAATATAAAACAATAATAAATTATATTAAGTTCTATT
AAGTTCTATTAAGTTATATAGAATTAGATATTAATATCTTAATATGGATTAATATATAGATTAAT
ATGGGCTTATATTGATTGAATAGGGCAATAGAAGATTACTTTGTT
Found at i:54678 original size:66 final size:66
Alignment explanation
Indices: 54599--54731 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
54589 GTTGGTATAT
54599 TCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAA
1 TCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAA
54664 A
66 A
54665 TCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAA
1 TCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAA
54730 A
66 A
54731 T
1 T
54732 AAATCTATAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.49
Consensus pattern (66 bp):
TCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAA
A
Left flanking sequence: Indices 54099 -- 54598
GAAATTATAAATGCCAAAATAGGAATAATGCTTGATATTATCAGAAATGCCCAGAAAATATCATA
TTCGTAAAGCAGAAACATAGGTGCACTCCTATGAATGTGAAAAATATAATAGAAAATATACTAGA
TTAGTCGAGTTGAATTGAAATTAATTGTCAACTCATCCATAACTGTTTAGTCAAAACAAGAATTT
TTTTTTATTATTATACCTTATATACTACTTTATTTTATTATATTTATTATATACTACTTTATACT
ACTTTTACTTTATTTTATTACTTTATTTTATATTATATTTTTTTTTATGTTTATAACTAGAGTTT
ACAATTCTAATCATCAAATAGAATCATCAAAGGAGAGAGACTCCTTTCTTTTATATATTATATAT
GGTTTCTTATTAATTTAAAATGGAATGGAGGAAAAAGCCAGATGTCGGAGAATGTCTAGGAATTT
TCATCTTACAATTTAAAGTTAGAGTATAATGTGGTGTTGGTATAT
Right flanking sequence: Indices 54732 -- 55231
AAATCTATAAAAAAAAAAGAACTCTATAAAATAATAATATAAAACAATAATAAATTATATTAAGT
TCTATTAAGTTCTATTAAGTTATATAGAATTAGATATTAATATCTTAATATGGATTAATATATAG
ATTAATATGGGCTTATATTGATTGAATAGGGCAATAGAAGATTACTTTGTTTTATGTTTTAACAG
GTAAAATATACCAAAAAAAGCCAAGTCCATTTGACAATGTTAATAATAAAAAATGTTAATAATGA
AAGATCTTCATTTTTCAAACTCCGGCTGTCTATAAATGCAGTAAGTCGTTCCTAAATCCTTGTAA
CGTACTAGTAGATTCGATTTTGGTTGGGTTAGGTTGGGATTTGTTTTTACCTTTACCCAAGTTGA
TGTCATGGTTTTGATTCTAAAAATTCACTAGGATTAGGTAAGTATCTCAAAGACAAAGAAAAGAA
GTATCACTAACTCTTTGATTGTGGACAGGAAAGGGGGAAAGTTCA
Found at i:54804 original size:10 final size:10
Alignment explanation
Indices: 54789--54817 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
54779 TAATAAATTA
54789 TATTAAGTTC
1 TATTAAGTTC
54799 TATTAAGTTC
1 TATTAAGTTC
54809 TATTAAGTT
1 TATTAAGTT
54818 ATATAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (10 bp):
TATTAAGTTC
Left flanking sequence: Indices 54289 -- 54788
AATTTTTTTTTATTATTATACCTTATATACTACTTTATTTTATTATATTTATTATATACTACTTT
ATACTACTTTTACTTTATTTTATTACTTTATTTTATATTATATTTTTTTTTATGTTTATAACTAG
AGTTTACAATTCTAATCATCAAATAGAATCATCAAAGGAGAGAGACTCCTTTCTTTTATATATTA
TATATGGTTTCTTATTAATTTAAAATGGAATGGAGGAAAAAGCCAGATGTCGGAGAATGTCTAGG
AATTTTCATCTTACAATTTAAAGTTAGAGTATAATGTGGTGTTGGTATATTCTTTTTATTTTATT
GATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAAATCTTTTTATTTTAT
TGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAAATAAATCTATAAAA
AAAAAAGAACTCTATAAAATAATAATATAAAACAATAATAAATTA
Right flanking sequence: Indices 54818 -- 55317
ATATAGAATTAGATATTAATATCTTAATATGGATTAATATATAGATTAATATGGGCTTATATTGA
TTGAATAGGGCAATAGAAGATTACTTTGTTTTATGTTTTAACAGGTAAAATATACCAAAAAAAGC
CAAGTCCATTTGACAATGTTAATAATAAAAAATGTTAATAATGAAAGATCTTCATTTTTCAAACT
CCGGCTGTCTATAAATGCAGTAAGTCGTTCCTAAATCCTTGTAACGTACTAGTAGATTCGATTTT
GGTTGGGTTAGGTTGGGATTTGTTTTTACCTTTACCCAAGTTGATGTCATGGTTTTGATTCTAAA
AATTCACTAGGATTAGGTAAGTATCTCAAAGACAAAGAAAAGAAGTATCACTAACTCTTTGATTG
TGGACAGGAAAGGGGGAAAGTTCATATGAAATTAACCTATGACATATGAAATTGACCTACGACAT
ATGTAATTTACCTATCGACATATGAAATTGACCTATGAAGAGGAA
Found at i:54878 original size:20 final size:20
Alignment explanation
Indices: 54855--54893 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
54845 TATGGATTAA
54855 TATATAGATT-AATATGGGCT
1 TATATAGATTGAATA-GGGCT
*
54875 TATATTGATTGAATAGGGC
1 TATATAGATTGAATAGGGC
54894 AATAGAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.38
Consensus pattern (20 bp):
TATATAGATTGAATAGGGCT
Left flanking sequence: Indices 54355 -- 54854
TACTACTTTTACTTTATTTTATTACTTTATTTTATATTATATTTTTTTTTATGTTTATAACTAGA
GTTTACAATTCTAATCATCAAATAGAATCATCAAAGGAGAGAGACTCCTTTCTTTTATATATTAT
ATATGGTTTCTTATTAATTTAAAATGGAATGGAGGAAAAAGCCAGATGTCGGAGAATGTCTAGGA
ATTTTCATCTTACAATTTAAAGTTAGAGTATAATGTGGTGTTGGTATATTCTTTTTATTTTATTG
ATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAAATCTTTTTATTTTATT
GATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATAATAAAATAAATCTATAAAAA
AAAAAGAACTCTATAAAATAATAATATAAAACAATAATAAATTATATTAAGTTCTATTAAGTTCT
ATTAAGTTATATAGAATTAGATATTAATATCTTAATATGGATTAA
Right flanking sequence: Indices 54894 -- 55393
AATAGAAGATTACTTTGTTTTATGTTTTAACAGGTAAAATATACCAAAAAAAGCCAAGTCCATTT
GACAATGTTAATAATAAAAAATGTTAATAATGAAAGATCTTCATTTTTCAAACTCCGGCTGTCTA
TAAATGCAGTAAGTCGTTCCTAAATCCTTGTAACGTACTAGTAGATTCGATTTTGGTTGGGTTAG
GTTGGGATTTGTTTTTACCTTTACCCAAGTTGATGTCATGGTTTTGATTCTAAAAATTCACTAGG
ATTAGGTAAGTATCTCAAAGACAAAGAAAAGAAGTATCACTAACTCTTTGATTGTGGACAGGAAA
GGGGGAAAGTTCATATGAAATTAACCTATGACATATGAAATTGACCTACGACATATGTAATTTAC
CTATCGACATATGAAATTGACCTATGAAGAGGAATGAAGAAAATTTGCTTTGTTTAGCCAAGATT
AGAAAAAATACGGATTGGATCTATTGAAATGCACTTTTTTTGGTT
Found at i:55293 original size:21 final size:21
Alignment explanation
Indices: 55230--55308 Score: 117
Period size: 20 Copynumber: 3.9 Consensus size: 21
55220 GGGGAAAGTT
*
55230 CATATGAAATTAACCTAT-GA
1 CATATGAAATTGACCTATCGA
55250 CATATGAAATTGACCTA-CGA
1 CATATGAAATTGACCTATCGA
* *
55270 CATATGTAATTTACCTATCGA
1 CATATGAAATTGACCTATCGA
55291 CATATGAAATTGACCTAT
1 CATATGAAATTGACCTAT
55309 GAAGAGGAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
20 33 0.63
21 19 0.37
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (21 bp):
CATATGAAATTGACCTATCGA
Left flanking sequence: Indices 54730 -- 55229
ATAAATCTATAAAAAAAAAAGAACTCTATAAAATAATAATATAAAACAATAATAAATTATATTAA
GTTCTATTAAGTTCTATTAAGTTATATAGAATTAGATATTAATATCTTAATATGGATTAATATAT
AGATTAATATGGGCTTATATTGATTGAATAGGGCAATAGAAGATTACTTTGTTTTATGTTTTAAC
AGGTAAAATATACCAAAAAAAGCCAAGTCCATTTGACAATGTTAATAATAAAAAATGTTAATAAT
GAAAGATCTTCATTTTTCAAACTCCGGCTGTCTATAAATGCAGTAAGTCGTTCCTAAATCCTTGT
AACGTACTAGTAGATTCGATTTTGGTTGGGTTAGGTTGGGATTTGTTTTTACCTTTACCCAAGTT
GATGTCATGGTTTTGATTCTAAAAATTCACTAGGATTAGGTAAGTATCTCAAAGACAAAGAAAAG
AAGTATCACTAACTCTTTGATTGTGGACAGGAAAGGGGGAAAGTT
Right flanking sequence: Indices 55309 -- 55808
GAAGAGGAATGAAGAAAATTTGCTTTGTTTAGCCAAGATTAGAAAAAATACGGATTGGATCTATT
GAAATGCACTTTTTTTGGTTTCAGCTTTATACTGTACCCTGAAAGATTCCTGTGAATAAACTTAT
AAGAATGCTTTTTTTCTTTTCGATGAACCAAACAACAAACAATACAATAATGAAGAAATGAAAAC
TATACAATTTTTACAATTTTTATATTTGAATTTTTTTTTTTCATTTTTTTAGGGCTATACGGATT
CGAACCGTAGACCTGCTCGGTAAAACAGATCAAACTTATTATTATCAAAATGATTCGAACTGTTT
CAAAGACCCAACATGCATTTTTTTTTGCATTGGGCTCTTTCATTAACTGATTATTTATATCAGTT
AGTCTACCAAAATTCTCTTGACAGAAAGATAAGAAGATGGCTCCATGTGCTCTGATTTATAATTT
GGATTACGATCCGAGAGTACTATACCAAAGTGCTTCAAAAAAGGG
Found at i:55300 original size:41 final size:40
Alignment explanation
Indices: 55230--55307 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 40
55220 GGGGAAAGTT
55230 CATATGAAATTAACCTATGACATATGAAATTGACCTACGA
1 CATATGAAATTAACCTATGACATATGAAATTGACCTACGA
* *
55270 CATATGTAATTTACCTATCGACATATGAAATTGACCTA
1 CATATGAAATTAACCTAT-GACATATGAAATTGACCTA
55308 TGAAGAGGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 16 0.46
41 19 0.54
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.31
Consensus pattern (40 bp):
CATATGAAATTAACCTATGACATATGAAATTGACCTACGA
Left flanking sequence: Indices 54730 -- 55229
ATAAATCTATAAAAAAAAAAGAACTCTATAAAATAATAATATAAAACAATAATAAATTATATTAA
GTTCTATTAAGTTCTATTAAGTTATATAGAATTAGATATTAATATCTTAATATGGATTAATATAT
AGATTAATATGGGCTTATATTGATTGAATAGGGCAATAGAAGATTACTTTGTTTTATGTTTTAAC
AGGTAAAATATACCAAAAAAAGCCAAGTCCATTTGACAATGTTAATAATAAAAAATGTTAATAAT
GAAAGATCTTCATTTTTCAAACTCCGGCTGTCTATAAATGCAGTAAGTCGTTCCTAAATCCTTGT
AACGTACTAGTAGATTCGATTTTGGTTGGGTTAGGTTGGGATTTGTTTTTACCTTTACCCAAGTT
GATGTCATGGTTTTGATTCTAAAAATTCACTAGGATTAGGTAAGTATCTCAAAGACAAAGAAAAG
AAGTATCACTAACTCTTTGATTGTGGACAGGAAAGGGGGAAAGTT
Right flanking sequence: Indices 55308 -- 55807
TGAAGAGGAATGAAGAAAATTTGCTTTGTTTAGCCAAGATTAGAAAAAATACGGATTGGATCTAT
TGAAATGCACTTTTTTTGGTTTCAGCTTTATACTGTACCCTGAAAGATTCCTGTGAATAAACTTA
TAAGAATGCTTTTTTTCTTTTCGATGAACCAAACAACAAACAATACAATAATGAAGAAATGAAAA
CTATACAATTTTTACAATTTTTATATTTGAATTTTTTTTTTTCATTTTTTTAGGGCTATACGGAT
TCGAACCGTAGACCTGCTCGGTAAAACAGATCAAACTTATTATTATCAAAATGATTCGAACTGTT
TCAAAGACCCAACATGCATTTTTTTTTGCATTGGGCTCTTTCATTAACTGATTATTTATATCAGT
TAGTCTACCAAAATTCTCTTGACAGAAAGATAAGAAGATGGCTCCATGTGCTCTGATTTATAATT
TGGATTACGATCCGAGAGTACTATACCAAAGTGCTTCAAAAAAGG
Found at i:56274 original size:23 final size:18
Alignment explanation
Indices: 56229--56264 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
56219 CCTTGTGCTT
56229 GTAATACATATTTTATTA
1 GTAATACATATTTTATTA
56247 GTAATACATATTTTATTA
1 GTAATACATATTTTATTA
56265 TGTCGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
GTAATACATATTTTATTA
Left flanking sequence: Indices 55729 -- 56228
AAGAAGATGGCTCCATGTGCTCTGATTTATAATTTGGATTACGATCCGAGAGTACTATACCAAAG
TGCTTCAAAAAAGGGGTATTTTGACGTAGGTCTGCTTTTGACTTAGGTCAACCTAAGTTAAATGG
AGTCTCCATCGCCTCGTTTCTGAATCAAATATGAAACTTCATACACCTTAAAGTTCATAAGATAT
AGGACGAAAAGAGAATTTTTTGAGGTCCTTATCCTCATTACTCATTATGCCTAGCATTGAATAGA
CTGGATATTCACCTTATCAATATCTTAAATCAATGATGGGTTCTATTGATTGCCTAAATAGGACC
CAATCTTTCGTCAGGCTATTGTTTTCCGGTTCCCTAAAAGTCACGGAGTAAGACATCGACTTCTC
ATCTCAATAAGTCTTTTGATTACATGATATACTCTTCTGAAAAAAAAAAACCACATTGGCGCGCG
TGTAAACGAGGTGCTCTACCTAACTGAGCTATAGCCCTTGTGCTT
Right flanking sequence: Indices 56265 -- 56764
TGTCGATAATTTCTTGTCAAGATAAATATTATATGATCCAATACTCTATTTATTTCTTTGATCTT
TGATCTGTTTGATCAGTATTGCTTATAAATAATATTCCATTTATAATCCATCGATGTGATGGGTT
CCATTTGTTTACCTTTGTAATGATAAATAACCTACTTAACTCAGTGGTTAGAGTATTGCTTTCAT
ACGGCGGGAGTCATTGGTTCAAATCCAATAGTAGGTAGAACTCATTAGATATTCGAATCAATGGT
ATCTAATAAGTTTTTCTACCCACCCTATATTTTAGTGATTTTTTATCTTTTCCATTCCATTCTAT
TTCTCTATTTCAATTTCGTTTTTGAATTCAAAAATTTGTTGTTGTATTAGAATCCAATTGTACTT
ATGATTCTATTCAATTGGCAGAATCAAATAAGGGATATAAACAGAACTTCTGTTTATACATTATA
CAGAAGTTCTGTTGATTATTCGTCCGCACCAACTAGTTACTAGTT
Found at i:61163 original size:13 final size:13
Alignment explanation
Indices: 61145--61170 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
61135 ATAGGAACTT
61145 ATTCATATTAATA
1 ATTCATATTAATA
61158 ATTCATATTAATA
1 ATTCATATTAATA
61171 GACATAGACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTCATATTAATA
Left flanking sequence: Indices 60645 -- 61144
CATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAG
GCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGGAAGGAGATAAAATTTGAATT
CCCAGCAATGGATACTTTGTAATCCATTAATTGGCGTTCATTCTCTTAATTGAATTGCAATTAAA
CTCGGCCCAATCTTTTACTAAAAGGATTGAGCCGAATACAAAGATACTAATACAAGGATTTTATT
GTATATATTTTTGATGATACATCCTTAGCTAAGTATACAAGATCTTAAATACAAAATATAAAACT
AAACGACTCAAATCTTTCTATTGTTGTCTTGAATCTACAATTAATCCTAAGGATCTATAGGATTG
GTGTATTCTTTTACATCTCTAGTTTCGGATCCTGGGTCGAGCCAAGTATCACAACTTCTTCTACC
CATCTTGTATATTGTCCTTTTCATTCCGTGTTGGAATAGGAACTT
Right flanking sequence: Indices 61171 -- 61670
GACATAGACGAAATCTTACAAAAAAATGTTCTTCTTCATAGTCTTATAAGATTATAAGAAAAGAA
ATCTTTCTTTTCTCGACGTGAATTTGATATAACATGACAAATTCCTATTCTACTTATATTTAGTA
TTTAGTTCTATTTAGAATTATTCTAATATTTAGAATTATTAAAATTGAAAATGTGGTTTTATCAC
TAATCATATATAGTGAAGTGATACTTCAGATTCTTACAAAAGCAAAAGAGAATCATTTTTTTTTT
TTTCAAAACCTATTCCTTATTTTGTTATATTAGTTAATACTCCTATTGATTGAATCGATATGCGT
ATTCTGAGCGGAAATGAAATATTGAAATGATTTTTCATCGAATGACTATTCATCTATTTATTTTG
ATGTAAATTAAATATCGGTAAGAAAGCTTTATGAAAAAATGGTGGTTCAGTTCGATAGTATCCAA
GGGGGAGTTAGAATACAGGTGTAAGTTAAGTAAATCGAGGGGTAG
Found at i:63299 original size:14 final size:14
Alignment explanation
Indices: 63280--63308 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
63270 GTAAACCTCT
63280 ATCAACAAGATAAA
1 ATCAACAAGATAAA
63294 ATCAACAAGATAAA
1 ATCAACAAGATAAA
63308 A
1 A
63309 GAGCGAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.14
Consensus pattern (14 bp):
ATCAACAAGATAAA
Left flanking sequence: Indices 62780 -- 63279
ATAAAAAGTTATTTTATGTATCAATCCTTACATCTCCTACGACCGGTGGGGTGACAGCTAGTTTT
GGTATGTTGGGGGATATCATTATTGCTGAACCCAACGCCTACATTGCATTTGCAGGTAAAAGAGT
AATTGAACAAACATTGAATAAAATAGTACCTGAAGGTTCACAAGCGGCCGAATTTTTATTCCATA
AGGGCTTATTCGATCCAATCGTACCACGTAATCCTTTAAAAAGTGTTCTGAATGAGTTATTTCAA
CTCCATGCTTTCTTTCCTTTGAATCATAAAGAAAGGGGGGCCTTAAGTTAATTAGTTAATTAACT
TAAGTTAATTTTTTTTTTTTTTCCGGCGAACAAATATTTATTTATTGTTTATCAGAATCAAAGGA
AAAATCTATTCCTTGGATTTTTTTTTTGGTGACATAAGAGTCAATTGTAGAAAGAATCATGCAAA
TAATTTTTTTTGTCGATAGTTCTGATTACTAATTAGTAAACCTCT
Right flanking sequence: Indices 63309 -- 63808
GAGCGAATTCTTTCTTCCGCGAAATTCAATTGGACAAGATAAATAATAAAGAAAACGAATTTCAT
GTTCTTTTCTTACCTATGTATTGTATAGAAAATATGGAGTCTTACGTATTTCTATAATCCCCCGA
ACCCCCCCCTAAAAATCCCTCTTGCTGCATCGAATTGGAACGAGTTTTTCGGTAATTTAGAAGCG
TAAAAATTTCTTTATTCTTTATTTTTATTAAAATTATTAAAATTCAAATTATAAGACAAGAAAAA
GATAATAAAAGAAGAATAACAAACATAATGGATTATCATACATATATTTCATGTAGAATTTCATG
TAGAAAGAGGAATAAATTCATTTAGTTAGTTTTACACTCCTTGCGCTTTATTATATATACTCATA
TATATTCACTTAGATATACTTATTATATACGAATTATAATGATTTTAAGATATATTTTTAACAAT
ATAATATAACAATAATAAATAACAATAATAAAACAATAATATAAC
Found at i:63631 original size:12 final size:12
Alignment explanation
Indices: 63614--63638 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63604 TCATACATAT
63614 ATTTCATGTAGA
1 ATTTCATGTAGA
63626 ATTTCATGTAGA
1 ATTTCATGTAGA
63638 A
1 A
63639 AGAGGAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ATTTCATGTAGA
Left flanking sequence: Indices 63114 -- 63613
TTTTTTTTTTTTTCCGGCGAACAAATATTTATTTATTGTTTATCAGAATCAAAGGAAAAATCTAT
TCCTTGGATTTTTTTTTTGGTGACATAAGAGTCAATTGTAGAAAGAATCATGCAAATAATTTTTT
TTGTCGATAGTTCTGATTACTAATTAGTAAACCTCTATCAACAAGATAAAATCAACAAGATAAAA
GAGCGAATTCTTTCTTCCGCGAAATTCAATTGGACAAGATAAATAATAAAGAAAACGAATTTCAT
GTTCTTTTCTTACCTATGTATTGTATAGAAAATATGGAGTCTTACGTATTTCTATAATCCCCCGA
ACCCCCCCCTAAAAATCCCTCTTGCTGCATCGAATTGGAACGAGTTTTTCGGTAATTTAGAAGCG
TAAAAATTTCTTTATTCTTTATTTTTATTAAAATTATTAAAATTCAAATTATAAGACAAGAAAAA
GATAATAAAAGAAGAATAACAAACATAATGGATTATCATACATAT
Right flanking sequence: Indices 63639 -- 64138
AGAGGAATAAATTCATTTAGTTAGTTTTACACTCCTTGCGCTTTATTATATATACTCATATATAT
TCACTTAGATATACTTATTATATACGAATTATAATGATTTTAAGATATATTTTTAACAATATAAT
ATAACAATAATAAATAACAATAATAAAACAATAATATAACAATAAAACAATAATAAATAAACCAA
TAATAAATAAAAAAATTAATATAACTATAACAATAAATAACAGGTACAAATATTAAATCGAGGTG
CCCATTCTATGACAATTCTCAACAACTTACCCTCTATTTTTGTGCCTTTAGTAGGCTTAATATTT
CCGGCAATTGCAATGGCTTCTTTATCTCTTCATGTTCAAAAAAACAAGATTTTTTAGATCTGATG
GGGCAAATTGAATTCCCGACATATATATTTTTCAAGACTTAGACTTGGGTTATAACACAAATATC
TATTTAGTATAATATCATATAAGACGCGGCTTCCTTCAAACATAA
Found at i:63773 original size:13 final size:13
Alignment explanation
Indices: 63757--63812 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 13
63747 GATATATTTT
63757 TAACAATATAATA
1 TAACAATATAATA
63770 TAACAATAATAA-A
1 TAACAAT-ATAATA
63783 TAAC-A-ATAATA
1 TAACAATATAATA
*
63794 AAAC-A-ATAATA
1 TAACAATATAATA
63805 TAACAATA
1 TAACAATA
63813 AAACAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
10 4 0.11
11 14 0.38
12 2 0.05
13 13 0.35
14 4 0.11
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (13 bp):
TAACAATATAATA
Left flanking sequence: Indices 63257 -- 63756
TGATTACTAATTAGTAAACCTCTATCAACAAGATAAAATCAACAAGATAAAAGAGCGAATTCTTT
CTTCCGCGAAATTCAATTGGACAAGATAAATAATAAAGAAAACGAATTTCATGTTCTTTTCTTAC
CTATGTATTGTATAGAAAATATGGAGTCTTACGTATTTCTATAATCCCCCGAACCCCCCCCTAAA
AATCCCTCTTGCTGCATCGAATTGGAACGAGTTTTTCGGTAATTTAGAAGCGTAAAAATTTCTTT
ATTCTTTATTTTTATTAAAATTATTAAAATTCAAATTATAAGACAAGAAAAAGATAATAAAAGAA
GAATAACAAACATAATGGATTATCATACATATATTTCATGTAGAATTTCATGTAGAAAGAGGAAT
AAATTCATTTAGTTAGTTTTACACTCCTTGCGCTTTATTATATATACTCATATATATTCACTTAG
ATATACTTATTATATACGAATTATAATGATTTTAAGATATATTTT
Right flanking sequence: Indices 63813 -- 64312
AAACAATAATAAATAAACCAATAATAAATAAAAAAATTAATATAACTATAACAATAAATAACAGG
TACAAATATTAAATCGAGGTGCCCATTCTATGACAATTCTCAACAACTTACCCTCTATTTTTGTG
CCTTTAGTAGGCTTAATATTTCCGGCAATTGCAATGGCTTCTTTATCTCTTCATGTTCAAAAAAA
CAAGATTTTTTAGATCTGATGGGGCAAATTGAATTCCCGACATATATATTTTTCAAGACTTAGAC
TTGGGTTATAACACAAATATCTATTTAGTATAATATCATATAAGACGCGGCTTCCTTCAAACATA
AATGAACCAACATAAATGAAACTTAGGCAAGCGTAAATAGGATATATGAGTAAATGAACTATTTG
AAAATAAGTCGAGATTGGGACAGATATCTGAATAAAAGCTAAGCCAATGTATCTATATGTATATA
GATAGCAGATCATATGAAAGAAAGGGCTCCTATTATTTTAGATCT
Found at i:63814 original size:19 final size:19
Alignment explanation
Indices: 63764--63823 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
63754 TTTTAACAAT
*
63764 ATAATATAACAATAATA-A
1 ATAATATAACAATAAAACA
* *
63782 AT-A-ACAATAATAAAACA
1 ATAATATAACAATAAAACA
63799 ATAATATAACAATAAAACA
1 ATAATATAACAATAAAACA
63818 ATAATA
1 ATAATA
63824 AATAAACCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
16 9 0.26
17 4 0.12
18 3 0.09
19 18 0.53
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.23
Consensus pattern (19 bp):
ATAATATAACAATAAAACA
Left flanking sequence: Indices 63264 -- 63763
TAATTAGTAAACCTCTATCAACAAGATAAAATCAACAAGATAAAAGAGCGAATTCTTTCTTCCGC
GAAATTCAATTGGACAAGATAAATAATAAAGAAAACGAATTTCATGTTCTTTTCTTACCTATGTA
TTGTATAGAAAATATGGAGTCTTACGTATTTCTATAATCCCCCGAACCCCCCCCTAAAAATCCCT
CTTGCTGCATCGAATTGGAACGAGTTTTTCGGTAATTTAGAAGCGTAAAAATTTCTTTATTCTTT
ATTTTTATTAAAATTATTAAAATTCAAATTATAAGACAAGAAAAAGATAATAAAAGAAGAATAAC
AAACATAATGGATTATCATACATATATTTCATGTAGAATTTCATGTAGAAAGAGGAATAAATTCA
TTTAGTTAGTTTTACACTCCTTGCGCTTTATTATATATACTCATATATATTCACTTAGATATACT
TATTATATACGAATTATAATGATTTTAAGATATATTTTTAACAAT
Right flanking sequence: Indices 63824 -- 64323
AATAAACCAATAATAAATAAAAAAATTAATATAACTATAACAATAAATAACAGGTACAAATATTA
AATCGAGGTGCCCATTCTATGACAATTCTCAACAACTTACCCTCTATTTTTGTGCCTTTAGTAGG
CTTAATATTTCCGGCAATTGCAATGGCTTCTTTATCTCTTCATGTTCAAAAAAACAAGATTTTTT
AGATCTGATGGGGCAAATTGAATTCCCGACATATATATTTTTCAAGACTTAGACTTGGGTTATAA
CACAAATATCTATTTAGTATAATATCATATAAGACGCGGCTTCCTTCAAACATAAATGAACCAAC
ATAAATGAAACTTAGGCAAGCGTAAATAGGATATATGAGTAAATGAACTATTTGAAAATAAGTCG
AGATTGGGACAGATATCTGAATAAAAGCTAAGCCAATGTATCTATATGTATATAGATAGCAGATC
ATATGAAAGAAAGGGCTCCTATTATTTTAGATCTAACGAATTTCA
Found at i:63823 original size:11 final size:11
Alignment explanation
Indices: 63764--63840 Score: 75
Period size: 11 Copynumber: 6.7 Consensus size: 11
63754 TTTTAACAAT
*
63764 ATAATATAACA
1 ATAATAAAACA
63775 ATAATAAATAACA
1 ATAAT-AA-AACA
63788 ATAATAAAACA
1 ATAATAAAACA
*
63799 ATAATATAACA
1 ATAATAAAACA
*
63810 ATAA-AACAATA
1 ATAATAA-AACA
*
63821 ATAAATAAACCA
1 AT-AATAAAACA
63833 ATAATAAA
1 ATAATAAA
63841 TAAAAAAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
10 1 0.02
11 34 0.62
12 9 0.16
13 11 0.20
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (11 bp):
ATAATAAAACA
Left flanking sequence: Indices 63264 -- 63763
TAATTAGTAAACCTCTATCAACAAGATAAAATCAACAAGATAAAAGAGCGAATTCTTTCTTCCGC
GAAATTCAATTGGACAAGATAAATAATAAAGAAAACGAATTTCATGTTCTTTTCTTACCTATGTA
TTGTATAGAAAATATGGAGTCTTACGTATTTCTATAATCCCCCGAACCCCCCCCTAAAAATCCCT
CTTGCTGCATCGAATTGGAACGAGTTTTTCGGTAATTTAGAAGCGTAAAAATTTCTTTATTCTTT
ATTTTTATTAAAATTATTAAAATTCAAATTATAAGACAAGAAAAAGATAATAAAAGAAGAATAAC
AAACATAATGGATTATCATACATATATTTCATGTAGAATTTCATGTAGAAAGAGGAATAAATTCA
TTTAGTTAGTTTTACACTCCTTGCGCTTTATTATATATACTCATATATATTCACTTAGATATACT
TATTATATACGAATTATAATGATTTTAAGATATATTTTTAACAAT
Right flanking sequence: Indices 63841 -- 64340
TAAAAAAATTAATATAACTATAACAATAAATAACAGGTACAAATATTAAATCGAGGTGCCCATTC
TATGACAATTCTCAACAACTTACCCTCTATTTTTGTGCCTTTAGTAGGCTTAATATTTCCGGCAA
TTGCAATGGCTTCTTTATCTCTTCATGTTCAAAAAAACAAGATTTTTTAGATCTGATGGGGCAAA
TTGAATTCCCGACATATATATTTTTCAAGACTTAGACTTGGGTTATAACACAAATATCTATTTAG
TATAATATCATATAAGACGCGGCTTCCTTCAAACATAAATGAACCAACATAAATGAAACTTAGGC
AAGCGTAAATAGGATATATGAGTAAATGAACTATTTGAAAATAAGTCGAGATTGGGACAGATATC
TGAATAAAAGCTAAGCCAATGTATCTATATGTATATAGATAGCAGATCATATGAAAGAAAGGGCT
CCTATTATTTTAGATCTAACGAATTTCATGAATTCGTCCTAAAGG
Found at i:66377 original size:14 final size:14
Alignment explanation
Indices: 66358--66386 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
66348 TTCTTCTCAC
66358 ATTTTAGTTTTAGT
1 ATTTTAGTTTTAGT
66372 ATTTTAGTTTTAGT
1 ATTTTAGTTTTAGT
66386 A
1 A
66387 AACATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (14 bp):
ATTTTAGTTTTAGT
Left flanking sequence: Indices 65858 -- 66357
TTTTTCACTTCTCGACAAATATAATCTGTTTCATTATTTTAAGTGGTTATTCTATTCTAAGTAAT
GAAAAACTTATTATTCTTAATTCTTGGGTGCAAGAATTCCTATATAACTTAAGTGACACAATAAA
AGCTTTTTCTATTCTTTTATTAACCGATTTATGTATAGGATTCCATTCACCCCACGGCTGGGAAC
TAATGATTGGCTCTATCTACAAAGATTTTGGATTTGCTCATAATGATCAAATTATATCTGGGCTT
GTTTCCACTTTTCCAGTCATTCTCGATACCATTTTTAAATATTGGATCTTTCGTTATTTAAATCG
TATATCTCCGTCACTTGTAGTGATTTATCATTCAATGAATGACTGAAAAATGATCCCCTAATCCA
ATTAGAATGTTTGTTATTTTATTTTGTACATAAGCAAAACATTCAAAATCTTACTTTTTTTTATA
CACTTCTTTTTTTCTATACATCCAAGAGATTCAGATTCTTCTCAC
Right flanking sequence: Indices 66387 -- 66886
AACATTTTTCAGTAAATACCAGCATCGTGGATAGGGAACTATATTAGCGACCTATCTAATTTTAT
TGTAGAAATTTTCGGGATCAAGATTGTACCATGCAAAATAGAAAGACCTTTTCTTGTATAAGGGA
AGAGATTACTCGCTCCATTTCCGTATCACTCATGATATATATAATAACTCGGTCATCCATTTCAA
ATGCATATCCCATTTTTGCACAGCAGGGTTATGAAAATCCGCGCGAAGCAACTGGCCGTATTGTA
TGTGCAAATTGTCATTTGGCGAATAAGCCCGTGGATATTGAAGTTCCACAGGCAGTACTTCCTGA
TACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATG
GCAAAAAAGGGGCTTTGAATGTGGGGGCTGTTCTTATTTTACCCGAGGGGTTTGAATTAGCCCCT
CCTGATCGTATTTCGCCAGAGATGAAAGAAAAGATAGGTAATCTG
Found at i:69776 original size:15 final size:15
Alignment explanation
Indices: 69758--69802 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
69748 GGAATCCCTT
69758 TTTTAATTTTAAGGA
1 TTTTAATTTTAAGGA
69773 TTTTAATTTTAAGGA
1 TTTTAATTTTAAGGA
69788 TTTTAATTTTAAGGA
1 TTTTAATTTTAAGGA
69803 ATTAGGTAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
TTTTAATTTTAAGGA
Left flanking sequence: Indices 69258 -- 69757
AATAGGGAAGGTATAGTAATGCTATGAATGACCCAATATCGAATACTGGTAATAATATCAGCAAA
AGAACGTTCTCCTGTGCTTCCAGACATGCTGAGCTCCCCATATTCTTGTACAGTCAAAAAGGGAT
CGATTTCGTAAAAGATAAGATCAGTAAATGCAAATTCACCGAAATTCCATCTTTGTGAGATCGTC
AATATTGTACCAAGGGTTTATTTAAAGTATACCGAATCAGTATAGCTATCCTTCTTCTGACACAG
CAACGCAACTTCAATCAGTAATAAAGTCCTAAAAAATTTCTTTCTTCTTTTTTTTTTTCTTGTCG
CTGTAAAACCGTGTACCCTAAATCAGGTAAAATGAGAATTTGACGGTTTGCTTTCTAATAATAAT
AATTCGTGAAAGAGATTATCATATTGTCACAATTAAATTCGATGCGAAATCTAAAAATCCCGCCT
TCGTAGTTGTAGTTGTATAAGAAGAGTTTTTTTTTGGAATCCCTT
Right flanking sequence: Indices 69803 -- 70302
ATTAGGTAGTCGTACAATAACAAGTATTGGTAGTAGAGAGTATTCGATGAAAGAAGGAGAACAAC
AAAAAATAATTGCAATAATTAATATTCACGATGCACACATTCTTCATTCTTGTATTAGATCAAAA
AGTGCTTTCTTGACACTTAACTACAGAGAGAACTACAGAGAGAGGGTTTTTTCTTTTAATATGGA
ATATGGAAAGAAAATAAAATGTAAACCCTAGAAAACAAAAACAAATAATAGGAATTACTAGTTTT
AGAATCTTAGAATCTAGTTGGACCAAAACAAAATAAAGATTGAATTTTTTGAGTGATTTGATCGT
GCGATACTTTTCTTATTCGAGATATTATGGGAATGAATCTACTAATAAATTTAATTAAGGTAAAA
TGAAAAAGTAACAAAAAAGTAACAAAAAAGTAAAAAGTAAAGGGTAAATAAAGGATATTATAAAG
AAAAATCGAGATCACTTTTCTTTCTAAAAAAAAAAATGGATTTGA
Found at i:69968 original size:12 final size:12
Alignment explanation
Indices: 69951--69975 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69941 CTTGACACTT
69951 AACTACAGAGAG
1 AACTACAGAGAG
69963 AACTACAGAGAG
1 AACTACAGAGAG
69975 A
1 A
69976 GGGTTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.24, T:0.08
Consensus pattern (12 bp):
AACTACAGAGAG
Left flanking sequence: Indices 69451 -- 69950
TCAATATTGTACCAAGGGTTTATTTAAAGTATACCGAATCAGTATAGCTATCCTTCTTCTGACAC
AGCAACGCAACTTCAATCAGTAATAAAGTCCTAAAAAATTTCTTTCTTCTTTTTTTTTTTCTTGT
CGCTGTAAAACCGTGTACCCTAAATCAGGTAAAATGAGAATTTGACGGTTTGCTTTCTAATAATA
ATAATTCGTGAAAGAGATTATCATATTGTCACAATTAAATTCGATGCGAAATCTAAAAATCCCGC
CTTCGTAGTTGTAGTTGTATAAGAAGAGTTTTTTTTTGGAATCCCTTTTTTAATTTTAAGGATTT
TAATTTTAAGGATTTTAATTTTAAGGAATTAGGTAGTCGTACAATAACAAGTATTGGTAGTAGAG
AGTATTCGATGAAAGAAGGAGAACAACAAAAAATAATTGCAATAATTAATATTCACGATGCACAC
ATTCTTCATTCTTGTATTAGATCAAAAAGTGCTTTCTTGACACTT
Right flanking sequence: Indices 69976 -- 70475
GGGTTTTTTCTTTTAATATGGAATATGGAAAGAAAATAAAATGTAAACCCTAGAAAACAAAAACA
AATAATAGGAATTACTAGTTTTAGAATCTTAGAATCTAGTTGGACCAAAACAAAATAAAGATTGA
ATTTTTTGAGTGATTTGATCGTGCGATACTTTTCTTATTCGAGATATTATGGGAATGAATCTACT
AATAAATTTAATTAAGGTAAAATGAAAAAGTAACAAAAAAGTAACAAAAAAGTAAAAAGTAAAGG
GTAAATAAAGGATATTATAAAGAAAAATCGAGATCACTTTTCTTTCTAAAAAAAAAAATGGATTT
GATACAAATAAAACAAATAAAATACAAGATAGAAATAAAATACAAATAAATCAATAATAAATAAA
CTGTTTTTATTATTAATATTTTATTGTTTTAATATTTGTATTGTTTTAATATTAGTTTTATATTT
TATTTCTCAAGAGTTGTACAACGAATCTTTTAATCTTTGAATTCG
Found at i:70211 original size:11 final size:11
Alignment explanation
Indices: 70195--70225 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
70185 AGGTAAAATG
70195 AAAAAGTAACA
1 AAAAAGTAACA
70206 AAAAAGTAACA
1 AAAAAGTAACA
70217 AAAAAGTAA
1 AAAAAGTAA
70226 AAAGTAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.06, G:0.10, T:0.10
Consensus pattern (11 bp):
AAAAAGTAACA
Left flanking sequence: Indices 69695 -- 70194
AATCTAAAAATCCCGCCTTCGTAGTTGTAGTTGTATAAGAAGAGTTTTTTTTTGGAATCCCTTTT
TTAATTTTAAGGATTTTAATTTTAAGGATTTTAATTTTAAGGAATTAGGTAGTCGTACAATAACA
AGTATTGGTAGTAGAGAGTATTCGATGAAAGAAGGAGAACAACAAAAAATAATTGCAATAATTAA
TATTCACGATGCACACATTCTTCATTCTTGTATTAGATCAAAAAGTGCTTTCTTGACACTTAACT
ACAGAGAGAACTACAGAGAGAGGGTTTTTTCTTTTAATATGGAATATGGAAAGAAAATAAAATGT
AAACCCTAGAAAACAAAAACAAATAATAGGAATTACTAGTTTTAGAATCTTAGAATCTAGTTGGA
CCAAAACAAAATAAAGATTGAATTTTTTGAGTGATTTGATCGTGCGATACTTTTCTTATTCGAGA
TATTATGGGAATGAATCTACTAATAAATTTAATTAAGGTAAAATG
Right flanking sequence: Indices 70226 -- 70725
AAAGTAAAGGGTAAATAAAGGATATTATAAAGAAAAATCGAGATCACTTTTCTTTCTAAAAAAAA
AAATGGATTTGATACAAATAAAACAAATAAAATACAAGATAGAAATAAAATACAAATAAATCAAT
AATAAATAAACTGTTTTTATTATTAATATTTTATTGTTTTAATATTTGTATTGTTTTAATATTAG
TTTTATATTTTATTTCTCAAGAGTTGTACAACGAATCTTTTAATCTTTGAATTCGGAATCATGCG
AGGATAGGTAGATCTCATAGATGATGAATTTATTTTTTTTACTTATACTCGGTTTAGTACTCTAT
TTTTGTTAGTACTGTCTATAATCTATAATGATAATGATTGATAAATTCAAAACGTTCACTTGGTA
TTTTTCTTTATTCTCCTATCTTTCAAAAAATTGAACTTAGGGAAGTGCTTTACAAACATATATGT
ATAAAAAAAAGAGTTTATTTAGCTCCTTCATGCTTATTATAACTA
Found at i:70399 original size:16 final size:17
Alignment explanation
Indices: 70378--70418 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
70368 GTTTTTATTA
70378 TTAATATTT-TATTGTT
1 TTAATATTTGTATTGTT
70394 TTAATATTTGTATTGTT
1 TTAATATTTGTATTGTT
70411 TTAATATT
1 TTAATATT
70419 AGTTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (17 bp):
TTAATATTTGTATTGTT
Left flanking sequence: Indices 69878 -- 70377
TGCAATAATTAATATTCACGATGCACACATTCTTCATTCTTGTATTAGATCAAAAAGTGCTTTCT
TGACACTTAACTACAGAGAGAACTACAGAGAGAGGGTTTTTTCTTTTAATATGGAATATGGAAAG
AAAATAAAATGTAAACCCTAGAAAACAAAAACAAATAATAGGAATTACTAGTTTTAGAATCTTAG
AATCTAGTTGGACCAAAACAAAATAAAGATTGAATTTTTTGAGTGATTTGATCGTGCGATACTTT
TCTTATTCGAGATATTATGGGAATGAATCTACTAATAAATTTAATTAAGGTAAAATGAAAAAGTA
ACAAAAAAGTAACAAAAAAGTAAAAAGTAAAGGGTAAATAAAGGATATTATAAAGAAAAATCGAG
ATCACTTTTCTTTCTAAAAAAAAAAATGGATTTGATACAAATAAAACAAATAAAATACAAGATAG
AAATAAAATACAAATAAATCAATAATAAATAAACTGTTTTTATTA
Right flanking sequence: Indices 70419 -- 70918
AGTTTTATATTTTATTTCTCAAGAGTTGTACAACGAATCTTTTAATCTTTGAATTCGGAATCATG
CGAGGATAGGTAGATCTCATAGATGATGAATTTATTTTTTTTACTTATACTCGGTTTAGTACTCT
ATTTTTGTTAGTACTGTCTATAATCTATAATGATAATGATTGATAAATTCAAAACGTTCACTTGG
TATTTTTCTTTATTCTCCTATCTTTCAAAAAATTGAACTTAGGGAAGTGCTTTACAAACATATAT
GTATAAAAAAAAGAGTTTATTTAGCTCCTTCATGCTTATTATAACTAGTTATTTCGGTTTTCTAC
TAACGGCTTTAACTATAACTTCAGTTCTTTTTATTGGTCTGAGCAAGATACGACTTATTTGAAAT
TCATTGAAATGAACAATTCCTAAAAAGAAAAATAAATTCTTTTGCAGTATTCCATCTATTCTCTA
GTTCCTTGCCGTATCAATTTTCAATTTTTGGTTATTGAGATTTCT
Found at i:70981 original size:15 final size:16
Alignment explanation
Indices: 70956--70987 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
70946 AGATATTACC
70956 TCCCTTTTTAAACAAA
1 TCCCTTTTTAAACAAA
70972 TCCC-TTTTAAACAAA
1 TCCCTTTTTAAACAAA
70987 T
1 T
70988 TGAAATGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (16 bp):
TCCCTTTTTAAACAAA
Left flanking sequence: Indices 70456 -- 70955
TCTTTTAATCTTTGAATTCGGAATCATGCGAGGATAGGTAGATCTCATAGATGATGAATTTATTT
TTTTTACTTATACTCGGTTTAGTACTCTATTTTTGTTAGTACTGTCTATAATCTATAATGATAAT
GATTGATAAATTCAAAACGTTCACTTGGTATTTTTCTTTATTCTCCTATCTTTCAAAAAATTGAA
CTTAGGGAAGTGCTTTACAAACATATATGTATAAAAAAAAGAGTTTATTTAGCTCCTTCATGCTT
ATTATAACTAGTTATTTCGGTTTTCTACTAACGGCTTTAACTATAACTTCAGTTCTTTTTATTGG
TCTGAGCAAGATACGACTTATTTGAAATTCATTGAAATGAACAATTCCTAAAAAGAAAAATAAAT
TCTTTTGCAGTATTCCATCTATTCTCTAGTTCCTTGCCGTATCAATTTTCAATTTTTGGTTATTG
AGATTTCTGGGCAATATAGATTAATATTTAAGGATAGATATTACC
Right flanking sequence: Indices 70988 -- 71487
TGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGTCTAATTCCTATTACTTTGGCTGGAT
TATTTGTAACTGCCTATTTACAATACAGAAGGGGTGATCAGTTGGACCTTTGATTGATTAACGCC
TTGTTTTTTTGACCTTCTCCCTTCTTTAATCCACAGGAGGTCAAATTGCTGTTCAATTTTTTCTG
TATAATTTTTGACCTAACAAAAGAAAAAGAGAATCACGCTCTGTAGGATTTGAACCTACGACATT
GGGTTTTGGAGACCCACGTTCTGCCGAACTGAACTAAGAGCGTTTTCTTATCACAAAAAATAAGA
CTGTAAGAAAAAAGATTCTTTTTTTTAACTCCAATACATCTTAAACGCCTATACTCTCATACATA
ATATGAGAAAAATGAAAGATTAGGTATGTCCAATTTGAATTGATCTTAATTGATCCTTCATTATT
GCTCAGGGGTGAAGTAATAGGTAGGGATGACAGGATTTGAACCCG
Found at i:71612 original size:21 final size:21
Alignment explanation
Indices: 71588--71629 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
71578 TGTTTTTCCA
71588 CATACTTATTTCATTTTCTCT
1 CATACTTATTTCATTTTCTCT
71609 CATACTTATTTCATTTTCTCT
1 CATACTTATTTCATTTTCTCT
71630 ATTGATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.00, T:0.57
Consensus pattern (21 bp):
CATACTTATTTCATTTTCTCT
Left flanking sequence: Indices 71088 -- 71587
GATCAGTTGGACCTTTGATTGATTAACGCCTTGTTTTTTTGACCTTCTCCCTTCTTTAATCCACA
GGAGGTCAAATTGCTGTTCAATTTTTTCTGTATAATTTTTGACCTAACAAAAGAAAAAGAGAATC
ACGCTCTGTAGGATTTGAACCTACGACATTGGGTTTTGGAGACCCACGTTCTGCCGAACTGAACT
AAGAGCGTTTTCTTATCACAAAAAATAAGACTGTAAGAAAAAAGATTCTTTTTTTTAACTCCAAT
ACATCTTAAACGCCTATACTCTCATACATAATATGAGAAAAATGAAAGATTAGGTATGTCCAATT
TGAATTGATCTTAATTGATCCTTCATTATTGCTCAGGGGTGAAGTAATAGGTAGGGATGACAGGA
TTTGAACCCGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTTTCAA
TTGGTTTACAATGTCATTGTAGAGAATCCCTGTCTTGTTTTTCCA
Right flanking sequence: Indices 71630 -- 72129
ATTGATATACATAGTTTATCTTGCTATTTTGGCTTTTTGATCTCATATCCATATCATATAAATAA
CAATAAACTTATATATACTTATATTATATATACTTATATATATATCTATATCTTATATATATATG
GAATATGGAATATATATGGAATATGGAAGGAAATATGAAAGGAAGGAAATATGAAAAAAAATATG
ATAAAAAATATGATTATGATAATGATATATATATGAAAAAATATGAAAAAAATTAGAAAACCCAC
CCTCAATTTCATAAATACTCGGGCGGAAAGAGACATATTTGATTTTTTGAAATTAAGAAAAGAAG
AATCTTATTTATTAAACCATTGTATATTTTAATTTGAATTAGGGATTTCGGATACAAACCAAATA
CGAGTGGCCGTTAACTACATATATATCTGATCATATATGGATTCAATTCTGTATTCCAATAAACA
TTATTTATTACACTAACGAAGGAGGATTTCAAATGCGAGATCTAA
Found at i:71723 original size:15 final size:15
Alignment explanation
Indices: 71703--71755 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
71693 AACAATAAAC
71703 TTATATATACTTATA
1 TTATATATACTTATA
71718 TTATATATACTTATA
1 TTATATATACTTATA
*
71733 -TATATAT-CTATATC
1 TTATATATACT-TATA
71747 TTATATATA
1 TTATATATA
71756 TATGGAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
13 2 0.06
14 10 0.29
15 22 0.65
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATATATACTTATA
Left flanking sequence: Indices 71203 -- 71702
AAGAAAAAGAGAATCACGCTCTGTAGGATTTGAACCTACGACATTGGGTTTTGGAGACCCACGTT
CTGCCGAACTGAACTAAGAGCGTTTTCTTATCACAAAAAATAAGACTGTAAGAAAAAAGATTCTT
TTTTTTAACTCCAATACATCTTAAACGCCTATACTCTCATACATAATATGAGAAAAATGAAAGAT
TAGGTATGTCCAATTTGAATTGATCTTAATTGATCCTTCATTATTGCTCAGGGGTGAAGTAATAG
GTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCG
CTACATCCCTTTCAATTGGTTTACAATGTCATTGTAGAGAATCCCTGTCTTGTTTTTCCACATAC
TTATTTCATTTTCTCTCATACTTATTTCATTTTCTCTATTGATATACATAGTTTATCTTGCTATT
TTGGCTTTTTGATCTCATATCCATATCATATAAATAACAATAAAC
Right flanking sequence: Indices 71756 -- 72255
TATGGAATATGGAATATATATGGAATATGGAAGGAAATATGAAAGGAAGGAAATATGAAAAAAAA
TATGATAAAAAATATGATTATGATAATGATATATATATGAAAAAATATGAAAAAAATTAGAAAAC
CCACCCTCAATTTCATAAATACTCGGGCGGAAAGAGACATATTTGATTTTTTGAAATTAAGAAAA
GAAGAATCTTATTTATTAAACCATTGTATATTTTAATTTGAATTAGGGATTTCGGATACAAACCA
AATACGAGTGGCCGTTAACTACATATATATCTGATCATATATGGATTCAATTCTGTATTCCAATA
AACATTATTTATTACACTAACGAAGGAGGATTTCAAATGCGAGATCTAAAAACATATCTATCCGT
GGCGCCCGTAATAAGTACTCTATGGTTCGGTGCTTTAGCAGGTCTATTGATAGAGATCAATCGTT
TTTTCCCGGATGCGTTGACATTCCCTTTTTTTTCATTTTAGTTAT
Found at i:71736 original size:19 final size:20
Alignment explanation
Indices: 71714--71756 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
71704 TATATATACT
71714 TATATTATATATA-CTTATA
1 TATATTATATATATCTTATA
*
71733 TATA-TATCTATATCTTATA
1 TATATTATATATATCTTATA
71752 TATAT
1 TATAT
71757 ATGGAATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (20 bp):
TATATTATATATATCTTATA
Left flanking sequence: Indices 71214 -- 71713
AATCACGCTCTGTAGGATTTGAACCTACGACATTGGGTTTTGGAGACCCACGTTCTGCCGAACTG
AACTAAGAGCGTTTTCTTATCACAAAAAATAAGACTGTAAGAAAAAAGATTCTTTTTTTTAACTC
CAATACATCTTAAACGCCTATACTCTCATACATAATATGAGAAAAATGAAAGATTAGGTATGTCC
AATTTGAATTGATCTTAATTGATCCTTCATTATTGCTCAGGGGTGAAGTAATAGGTAGGGATGAC
AGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TCAATTGGTTTACAATGTCATTGTAGAGAATCCCTGTCTTGTTTTTCCACATACTTATTTCATTT
TCTCTCATACTTATTTCATTTTCTCTATTGATATACATAGTTTATCTTGCTATTTTGGCTTTTTG
ATCTCATATCCATATCATATAAATAACAATAAACTTATATATACT
Right flanking sequence: Indices 71757 -- 72256
ATGGAATATGGAATATATATGGAATATGGAAGGAAATATGAAAGGAAGGAAATATGAAAAAAAAT
ATGATAAAAAATATGATTATGATAATGATATATATATGAAAAAATATGAAAAAAATTAGAAAACC
CACCCTCAATTTCATAAATACTCGGGCGGAAAGAGACATATTTGATTTTTTGAAATTAAGAAAAG
AAGAATCTTATTTATTAAACCATTGTATATTTTAATTTGAATTAGGGATTTCGGATACAAACCAA
ATACGAGTGGCCGTTAACTACATATATATCTGATCATATATGGATTCAATTCTGTATTCCAATAA
ACATTATTTATTACACTAACGAAGGAGGATTTCAAATGCGAGATCTAAAAACATATCTATCCGTG
GCGCCCGTAATAAGTACTCTATGGTTCGGTGCTTTAGCAGGTCTATTGATAGAGATCAATCGTTT
TTTCCCGGATGCGTTGACATTCCCTTTTTTTTCATTTTAGTTATT
Found at i:71774 original size:18 final size:18
Alignment explanation
Indices: 71751--71787 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
71741 TATATCTTAT
71751 ATATATATGGAATATGGA
1 ATATATATGGAATATGGA
71769 ATATATATGGAATATGGA
1 ATATATATGGAATATGGA
71787 A
1 A
71788 GGAAATATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.32
Consensus pattern (18 bp):
ATATATATGGAATATGGA
Left flanking sequence: Indices 71251 -- 71750
TTTTGGAGACCCACGTTCTGCCGAACTGAACTAAGAGCGTTTTCTTATCACAAAAAATAAGACTG
TAAGAAAAAAGATTCTTTTTTTTAACTCCAATACATCTTAAACGCCTATACTCTCATACATAATA
TGAGAAAAATGAAAGATTAGGTATGTCCAATTTGAATTGATCTTAATTGATCCTTCATTATTGCT
CAGGGGTGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAA
CGCGCTACCAAGCTGCGCTACATCCCTTTCAATTGGTTTACAATGTCATTGTAGAGAATCCCTGT
CTTGTTTTTCCACATACTTATTTCATTTTCTCTCATACTTATTTCATTTTCTCTATTGATATACA
TAGTTTATCTTGCTATTTTGGCTTTTTGATCTCATATCCATATCATATAAATAACAATAAACTTA
TATATACTTATATTATATATACTTATATATATATCTATATCTTAT
Right flanking sequence: Indices 71788 -- 72287
GGAAATATGAAAGGAAGGAAATATGAAAAAAAATATGATAAAAAATATGATTATGATAATGATAT
ATATATGAAAAAATATGAAAAAAATTAGAAAACCCACCCTCAATTTCATAAATACTCGGGCGGAA
AGAGACATATTTGATTTTTTGAAATTAAGAAAAGAAGAATCTTATTTATTAAACCATTGTATATT
TTAATTTGAATTAGGGATTTCGGATACAAACCAAATACGAGTGGCCGTTAACTACATATATATCT
GATCATATATGGATTCAATTCTGTATTCCAATAAACATTATTTATTACACTAACGAAGGAGGATT
TCAAATGCGAGATCTAAAAACATATCTATCCGTGGCGCCCGTAATAAGTACTCTATGGTTCGGTG
CTTTAGCAGGTCTATTGATAGAGATCAATCGTTTTTTCCCGGATGCGTTGACATTCCCTTTTTTT
TCATTTTAGTTATTAACGCCGGGGGGTGAAGAAGATTCGAGATAT
Found at i:71805 original size:16 final size:16
Alignment explanation
Indices: 71784--71815 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
71774 TATGGAATAT
71784 GGAAGGAAATATGAAA
1 GGAAGGAAATATGAAA
71800 GGAAGGAAATATGAAA
1 GGAAGGAAATATGAAA
71816 AAAAATATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.31, T:0.12
Consensus pattern (16 bp):
GGAAGGAAATATGAAA
Left flanking sequence: Indices 71284 -- 71783
AGAGCGTTTTCTTATCACAAAAAATAAGACTGTAAGAAAAAAGATTCTTTTTTTTAACTCCAATA
CATCTTAAACGCCTATACTCTCATACATAATATGAGAAAAATGAAAGATTAGGTATGTCCAATTT
GAATTGATCTTAATTGATCCTTCATTATTGCTCAGGGGTGAAGTAATAGGTAGGGATGACAGGAT
TTGAACCCGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTTTCAAT
TGGTTTACAATGTCATTGTAGAGAATCCCTGTCTTGTTTTTCCACATACTTATTTCATTTTCTCT
CATACTTATTTCATTTTCTCTATTGATATACATAGTTTATCTTGCTATTTTGGCTTTTTGATCTC
ATATCCATATCATATAAATAACAATAAACTTATATATACTTATATTATATATACTTATATATATA
TCTATATCTTATATATATATGGAATATGGAATATATATGGAATAT
Right flanking sequence: Indices 71816 -- 72315
AAAAATATGATAAAAAATATGATTATGATAATGATATATATATGAAAAAATATGAAAAAAATTAG
AAAACCCACCCTCAATTTCATAAATACTCGGGCGGAAAGAGACATATTTGATTTTTTGAAATTAA
GAAAAGAAGAATCTTATTTATTAAACCATTGTATATTTTAATTTGAATTAGGGATTTCGGATACA
AACCAAATACGAGTGGCCGTTAACTACATATATATCTGATCATATATGGATTCAATTCTGTATTC
CAATAAACATTATTTATTACACTAACGAAGGAGGATTTCAAATGCGAGATCTAAAAACATATCTA
TCCGTGGCGCCCGTAATAAGTACTCTATGGTTCGGTGCTTTAGCAGGTCTATTGATAGAGATCAA
TCGTTTTTTCCCGGATGCGTTGACATTCCCTTTTTTTTCATTTTAGTTATTAACGCCGGGGGGTG
AAGAAGATTCGAGATATAATTCAATATCTGTGATTACTACCCCCC
Found at i:71838 original size:12 final size:12
Alignment explanation
Indices: 71806--71838 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
71796 GAAAGGAAGG
*
71806 AAATATGAAAAA
1 AAATATGATAAA
71818 AAATATGATAAA
1 AAATATGATAAA
71830 AAATATGAT
1 AAATATGAT
71839 TATGATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (12 bp):
AAATATGATAAA
Left flanking sequence: Indices 71306 -- 71805
AATAAGACTGTAAGAAAAAAGATTCTTTTTTTTAACTCCAATACATCTTAAACGCCTATACTCTC
ATACATAATATGAGAAAAATGAAAGATTAGGTATGTCCAATTTGAATTGATCTTAATTGATCCTT
CATTATTGCTCAGGGGTGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTAC
CCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTTTCAATTGGTTTACAATGTCATTGTAGA
GAATCCCTGTCTTGTTTTTCCACATACTTATTTCATTTTCTCTCATACTTATTTCATTTTCTCTA
TTGATATACATAGTTTATCTTGCTATTTTGGCTTTTTGATCTCATATCCATATCATATAAATAAC
AATAAACTTATATATACTTATATTATATATACTTATATATATATCTATATCTTATATATATATGG
AATATGGAATATATATGGAATATGGAAGGAAATATGAAAGGAAGG
Right flanking sequence: Indices 71839 -- 72338
TATGATAATGATATATATATGAAAAAATATGAAAAAAATTAGAAAACCCACCCTCAATTTCATAA
ATACTCGGGCGGAAAGAGACATATTTGATTTTTTGAAATTAAGAAAAGAAGAATCTTATTTATTA
AACCATTGTATATTTTAATTTGAATTAGGGATTTCGGATACAAACCAAATACGAGTGGCCGTTAA
CTACATATATATCTGATCATATATGGATTCAATTCTGTATTCCAATAAACATTATTTATTACACT
AACGAAGGAGGATTTCAAATGCGAGATCTAAAAACATATCTATCCGTGGCGCCCGTAATAAGTAC
TCTATGGTTCGGTGCTTTAGCAGGTCTATTGATAGAGATCAATCGTTTTTTCCCGGATGCGTTGA
CATTCCCTTTTTTTTCATTTTAGTTATTAACGCCGGGGGGTGAAGAAGATTCGAGATATAATTCA
ATATCTGTGATTACTACCCCCCTTTTTTTTAATTAGAATAAGTTC
Found at i:73035 original size:17 final size:16
Alignment explanation
Indices: 73015--73061 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
73005 ATATTCTATT
*
73015 TAAATATTAAATAGAAA
1 TAAATAGTAAA-AGAAA
73032 TAAATAAGTAAAAGAAA
1 TAAAT-AGTAAAAGAAA
73049 TAAATAAGTAAAA
1 TAAAT-AGTAAAA
73062 TCCTATTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 23 0.82
18 5 0.18
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.23
Consensus pattern (16 bp):
TAAATAGTAAAAGAAA
Left flanking sequence: Indices 72515 -- 73014
TCTAATCTAAATACAGTTTAACACTTATTGTATTATTTTATTAAATTTTATTACTATATTCGTTG
CACTATATTTGTTGTTGCAACGAAATCCTTCATAATTTGCTTTCGAGTTAGCAACTTCTATTTTT
TCCTTCCTTTCTTCTTGACTTGGGATCGGAAAATAGAAGAGTTGAGTGAATAAAAAACCCAAAGC
AAAGGAGGTTCATGGCCAAGGGTAAAGATGCCCGAGTAAAGGTTTTTTTGGAATGTATCGTTTGT
GTTCGAACCAGCGGTAATAAGAAATCAACAGGCATTTCCAGATATATTACTCAAAAGAATCGACA
CAATACGCCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTACAAACATACACTTCATG
GGGAGATCAAGAAATAGATGGAACCGCTCACCTGCGGGTCACCTTTAGCTTTAGAAGGAAGATGA
AAACTGACATACTAACATATAATATGTTAGGATATATATTCTATT
Right flanking sequence: Indices 73062 -- 73561
TCCTATTTCTTAATTCTAAACATTATAATTTTTGATCCGAGCGAACGAAATAAGATTTTTTTTTG
GAAATGAAAAAAGGAATAAACAAACCATGGATAAATCCAAGCGACTTTTTCTCAAGTCCAAGCGA
TCTTTTCGCAGACGTTTGTCCCCTATCCAATCGGGGAATCGAATTAATTATAGAAACATGAGTTT
AATTAGTCGATTTATTAGTGAACAAGGAAAAATATTGTCTAGACGGGTGAATAGATTGACTTTAA
AACAACAACGATTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCCTTTCTT
AATAATGAAAAACAATTTGAAAAAAGCGAATTGGTTGCAAGAACTACTGGTCTTAGAATCAGAAA
AAAATAGGCTTATTCTTCAATTGAATCAAAATTCCAATCCGAACTCAAACATAGATTAATCGTTT
TCTCGAAAAATCCAAAAATCCAGATTTGATTGTCGTGTCTTAAGA
Found at i:73901 original size:18 final size:18
Alignment explanation
Indices: 73878--73913 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73868 GTACAGATTG
*
73878 TTTATTAATTTACTGTAA
1 TTTATTAATTTACAGTAA
73896 TTTATTAATTTACAGTAA
1 TTTATTAATTTACAGTAA
73914 CTATAGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTATTAATTTACAGTAA
Left flanking sequence: Indices 73378 -- 73877
CCCTTTCTTAATAATGAAAAACAATTTGAAAAAAGCGAATTGGTTGCAAGAACTACTGGTCTTAG
AATCAGAAAAAAATAGGCTTATTCTTCAATTGAATCAAAATTCCAATCCGAACTCAAACATAGAT
TAATCGTTTTCTCGAAAAATCCAAAAATCCAGATTTGATTGTCGTGTCTTAAGAAAAAAAAAAAA
CGAATTGGGGAAGACGAATAAATCTTTTTTTTATTGAATGTTTTTGCTCAGTTTGATTACTTGAT
CATATTAGCATCATATTTTATTATACTAATTATATTTATTTCTATTCTACTTTCCTTTCCCGGAA
TTCGTTCTCCAAGGAACTTCATGTAAAAAATTCGGTTGGCTTCTTTCCAATCTCTTTATTTTTAT
TTATTTTATTTAGAATGTCATTGGAAATCATATAAAGACAATTTCTATTTAATAGAGCTATTTGT
GCAAGTATTTTACGATTAAGAAGCAACTGTCTCTTGTACAGATTG
Right flanking sequence: Indices 73914 -- 74413
CTATAGGATACTTTATTCGTGCGAATTACTGCATTTATTCGAGAAATCCACAAACGACGAAAATT
TCTTTTTTGTCTATCTCTATCCCGCTGGGCCGAAACCAAAGCTCTTATTTTTTGTTGAATAATAG
TTCGAGTAAGTTTTGAATGAGACCCGCGAAAGCTTGAGGCGAATAAACGAATTTTTGTTCTACGT
CTCCGAGCTATATATCCTCGTCTAATTCTGGTCATTGAATAAAGGGAACTTTGATGAATAACTAA
TTTATTTCTTTTCTTTCAGTTATTCTTTTCTCCTTTTCTAGAATAACAAAACAGATTCTTCCAAT
GTATAAAACAATAATTCCAACGGCTTTTGCTACTATAACCTTCCCAACCACGATTTGTTCTTTTT
TTTTTCTAGGCATTTCGCCTAGAAAAAAAAAATTGTATTGATATTCCGTATCAAGCAAAAATATA
AATATAATAAATAAAAACAAGTAGTAAATAGAAATGGATAAAGAA
Found at i:76574 original size:17 final size:17
Alignment explanation
Indices: 76548--76581 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
76538 ATGAATCCTT
*
76548 TCTAGTTTCTTTTCTAA
1 TCTAGCTTCTTTTCTAA
76565 TCTAGCTTCTTTTCTAA
1 TCTAGCTTCTTTTCTAA
76582 GGAAGGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (17 bp):
TCTAGCTTCTTTTCTAA
Left flanking sequence: Indices 76048 -- 76547
ATTTATTCATATTATATTTCATACATATGGCGAAGACATAGTTTTCTTTTTTCGTTCAAATAAAA
ACTCATTGGCGCTAAGCGTGAGGGAATGCTAGACGTTTGGTAATTTTTCCGCCGACCAGGATAAA
AGATCCCATTGAAGCGGCTAATCCCATGCATACTGTCTGTACATCTGGTTGCACAAATTGCATAG
TATCATAAATAGCTACTCCAGGTATTACCCATCCGCCAGGAGAGTTTATAAACAAATACAAATCT
TTGGTCTCACTTTCCATACTGAGATATACCATAAGACCAATAAGTTGATTTGAGATCTCGCTGTC
AACATCTTGACCTAAAAAAAGTAATCTTTCTCGATAAAGTCGGTTGATTAGGATAAAATTCTATC
CAATAGTAACCGTACATGTATCTTTTGATGCATACGGTTCAACAAAAAGAAAATCGCGAAAAAAG
AATCAATGTGTAGATTCCAGCTCTCCTTTTTGATAATGAATCCTT
Right flanking sequence: Indices 76582 -- 77081
GGAAGGGGCTTTTCTTTCATTTTTCAAGAAAGATGAGTTTTGACCATAACTATAAAAAGTAATTT
ATTAAACCTATCAAACTAACTTCTTATTGATGTATTCTTTCATCGAAATCCAATTCAAATCACGA
CATCATTTTCTTGTTCCTGAATGGGCTTTTTCAATTCTTTTAGGTTTGTGCTCTACTCCGAGTAA
AGATCTGCCTGATTTTTATTTGCGCATATAGGGCAAATGCCCCCAATACCGCACCTTTTTGCTAC
AACTTCCGTTTTTTTTTTTTCAATTCCTTTCATGTTTTCCACCAAGTATTTACCGTATTCATCAT
ATTATTCGATTGATTATTATTAGCAGTTTGAAATTACTCCTATTTATTATTTATAAATATCTATT
TATAAATCGAATATGATAAAGGAGTAATCATAGCTATATTATCAGTTGGGTTTTTCTAAACGGAG
CCTGGATAGTTTATTTTATTGGTCCAAACAAGCCAACCATAAATT
Found at i:77575 original size:18 final size:18
Alignment explanation
Indices: 77552--77589 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
77542 TCCTGAACAA
*
77552 ATCTGTATGTATTCACTT
1 ATCTGTATGCATTCACTT
77570 ATCTGTATGCATTCACTT
1 ATCTGTATGCATTCACTT
77588 AT
1 AT
77590 ATAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (18 bp):
ATCTGTATGCATTCACTT
Left flanking sequence: Indices 77052 -- 77551
TTATTGGTCCAAACAAGCCAACCATAAATTATTCTAATTGATAATATTAATTTAGATACTTCCCA
AGGGATAGATCTAATTGCACTTCATTGTATTTCACGCTCCAAATTTTGGATGATTTAATCAAACT
TTTTGGGGCGAAACAGAGGATATCCCGATCTGGAGAGAGAACGGGGAAATTCCATACGGCCCAAT
ATATCTGACAAGTCGCACTATATGTCAATCCAAATTGAATCGTCCTCTCCAGGATTTCGAAAAGG
GACTTTTGGAACACCAATAGGCATTAAATGAAAGAAAAAAATTAAGTACTCTAGGTTACTTTGAT
ATGGATATGAAAATTTCACTTTGATTTTAAAACGTAATTAAGGAATTTATTGTCTTAATAATATT
ATATTAGTCTTTATTTTATCATATTTTATGCGTAGATTCGATAAGTTCATAAATAAAAAAGGGAA
GATAAAATGAATAAAGTCAAATTCTTACGACTAAGTCCTGAACAA
Right flanking sequence: Indices 77590 -- 78089
ATAATAATATAAATATAATATAAATATATAATAATATAAATAAAGAAAAGGGAGTCGGCCCCCCC
ATTGCGTATTGATACTTATCGAATATAGAATAGATTTGCTTCTCTTTGTTCTTACAAACAGAATT
GTTACATGATTACTAATTATTACTAAAACAATCGAAAGAATATTAGTCTTTTCTATGAGATAATT
TACTGAAAAGGCGGGGTCCATAATATCGGTTTTCCAGTGCAATAAAGTTACATAGTGTCTACTTT
TCGTTGATAAAGGGGTATTTCCATGGGTTTGCCTTGGTATCGTGTTCATACTGTCGTATTGAATG
ATCCCGGCCGTTTGCTGTCTGTTCATATAATGCATACAGCTTTGGTTGCTGGTTGGGCCGGTTCG
ATGGCTCTATATGAATTAGCGGTTTTTGATCCCTCTGACCCTGTTCTTGATCCGATGTGGAGACA
AGGTATGTTCGTTATACCTTTCATGACTCGTTTAGGAATAACCAA
Found at i:77609 original size:11 final size:11
Alignment explanation
Indices: 77593--77633 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
77583 CACTTATATA
77593 ATAATATAAAT
1 ATAATATAAAT
77604 ATAATATAAAT
1 ATAATATAAAT
77615 AT-ATA-ATAAT
1 ATAATATA-AAT
77625 ATAA-ATAAA
1 ATAATATAAA
77634 GAAAAGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 1 0.04
10 11 0.41
11 15 0.56
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATAATATAAAT
Left flanking sequence: Indices 77093 -- 77592
TAATATTAATTTAGATACTTCCCAAGGGATAGATCTAATTGCACTTCATTGTATTTCACGCTCCA
AATTTTGGATGATTTAATCAAACTTTTTGGGGCGAAACAGAGGATATCCCGATCTGGAGAGAGAA
CGGGGAAATTCCATACGGCCCAATATATCTGACAAGTCGCACTATATGTCAATCCAAATTGAATC
GTCCTCTCCAGGATTTCGAAAAGGGACTTTTGGAACACCAATAGGCATTAAATGAAAGAAAAAAA
TTAAGTACTCTAGGTTACTTTGATATGGATATGAAAATTTCACTTTGATTTTAAAACGTAATTAA
GGAATTTATTGTCTTAATAATATTATATTAGTCTTTATTTTATCATATTTTATGCGTAGATTCGA
TAAGTTCATAAATAAAAAAGGGAAGATAAAATGAATAAAGTCAAATTCTTACGACTAAGTCCTGA
ACAAATCTGTATGTATTCACTTATCTGTATGCATTCACTTATATA
Right flanking sequence: Indices 77634 -- 78133
GAAAAGGGAGTCGGCCCCCCCATTGCGTATTGATACTTATCGAATATAGAATAGATTTGCTTCTC
TTTGTTCTTACAAACAGAATTGTTACATGATTACTAATTATTACTAAAACAATCGAAAGAATATT
AGTCTTTTCTATGAGATAATTTACTGAAAAGGCGGGGTCCATAATATCGGTTTTCCAGTGCAATA
AAGTTACATAGTGTCTACTTTTCGTTGATAAAGGGGTATTTCCATGGGTTTGCCTTGGTATCGTG
TTCATACTGTCGTATTGAATGATCCCGGCCGTTTGCTGTCTGTTCATATAATGCATACAGCTTTG
GTTGCTGGTTGGGCCGGTTCGATGGCTCTATATGAATTAGCGGTTTTTGATCCCTCTGACCCTGT
TCTTGATCCGATGTGGAGACAAGGTATGTTCGTTATACCTTTCATGACTCGTTTAGGAATAACCA
ATTCATGGGGCGGTTGGAGTATCACAGGAGGAACTATAACGAATC
Found at i:77612 original size:16 final size:16
Alignment explanation
Indices: 77593--77633 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
77583 CACTTATATA
77593 ATAATATAAAT-ATAAT
1 ATAA-ATAAATAATAAT
*
77609 ATAAATATATAATAAT
1 ATAAATAAATAATAAT
77625 ATAAATAAA
1 ATAAATAAA
77634 GAAAAGGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAAATAAATAATAAT
Left flanking sequence: Indices 77093 -- 77592
TAATATTAATTTAGATACTTCCCAAGGGATAGATCTAATTGCACTTCATTGTATTTCACGCTCCA
AATTTTGGATGATTTAATCAAACTTTTTGGGGCGAAACAGAGGATATCCCGATCTGGAGAGAGAA
CGGGGAAATTCCATACGGCCCAATATATCTGACAAGTCGCACTATATGTCAATCCAAATTGAATC
GTCCTCTCCAGGATTTCGAAAAGGGACTTTTGGAACACCAATAGGCATTAAATGAAAGAAAAAAA
TTAAGTACTCTAGGTTACTTTGATATGGATATGAAAATTTCACTTTGATTTTAAAACGTAATTAA
GGAATTTATTGTCTTAATAATATTATATTAGTCTTTATTTTATCATATTTTATGCGTAGATTCGA
TAAGTTCATAAATAAAAAAGGGAAGATAAAATGAATAAAGTCAAATTCTTACGACTAAGTCCTGA
ACAAATCTGTATGTATTCACTTATCTGTATGCATTCACTTATATA
Right flanking sequence: Indices 77634 -- 78133
GAAAAGGGAGTCGGCCCCCCCATTGCGTATTGATACTTATCGAATATAGAATAGATTTGCTTCTC
TTTGTTCTTACAAACAGAATTGTTACATGATTACTAATTATTACTAAAACAATCGAAAGAATATT
AGTCTTTTCTATGAGATAATTTACTGAAAAGGCGGGGTCCATAATATCGGTTTTCCAGTGCAATA
AAGTTACATAGTGTCTACTTTTCGTTGATAAAGGGGTATTTCCATGGGTTTGCCTTGGTATCGTG
TTCATACTGTCGTATTGAATGATCCCGGCCGTTTGCTGTCTGTTCATATAATGCATACAGCTTTG
GTTGCTGGTTGGGCCGGTTCGATGGCTCTATATGAATTAGCGGTTTTTGATCCCTCTGACCCTGT
TCTTGATCCGATGTGGAGACAAGGTATGTTCGTTATACCTTTCATGACTCGTTTAGGAATAACCA
ATTCATGGGGCGGTTGGAGTATCACAGGAGGAACTATAACGAATC
Found at i:87483 original size:4 final size:4
Alignment explanation
Indices: 87483--87528 Score: 58
Period size: 4 Copynumber: 11.0 Consensus size: 4
87473 CGAATTTATT
87483 TTTA TTTA TTTA TTTAA TTTA TTTCA -TTA TTTA TTTAA TTTA TTTA
1 TTTA TTTA TTTA TTT-A TTTA TTT-A TTTA TTTA TTT-A TTTA TTTA
87529 AAAGTCTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 1 0.03
4 28 0.74
5 9 0.24
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (4 bp):
TTTA
Left flanking sequence: Indices 86983 -- 87482
AAAGTATTCTACCCGGTTTAGCGACAGCTACCCAATATTCGGGGGATCCTTTCCCCGAACCCATA
CGCGTTTCAGTGGGTCTTACGGTAACGGGTTTGTCGGGAAATATACGTACCCATATTTTTCCACC
GCGGCGCGCATTTCGTGTCATTGCCCGACGTCCCGCTTCGATTTGTCTAGATGTGATCCAGGCGG
GTTCAAGTGCCTGAAGAGCGTATTTACCGAAACAAATACGATTACCTCGATAAGATATTCCTTTC
ATTCTTCCTCTATGTTGTTTACGGAATCGCGTTCTTTTAGGGTTATAGTTGATGGTTCTTTCTCT
ACTCCATCTCTACTACAGAACTGAACATGAGAGTTTCTTCTCATTCAGCTCCTCGCGAATGAACT
GATTCAAATAAAAAAATCTATACATATACGTGTATATGTACGTAATTGATGAATAATATACTGAA
TCATGTGAATCTTTGAGAATTGACCTAATTTATTTCGAATTTATT
Right flanking sequence: Indices 87529 -- 88028
AAAGTCTTTATTATTATGATATTAGATTCCTTAAAGTTTAGGAATCCAATAACATAAAAATCTTC
GCGCGCGAATATTTACTCTTTCAATATTTACTTCAATTTGTAGGGTTAACCCACCATCTCTCAGA
ATAAATAGATTATTTCCTGGTTCGTTTCGCCATCCCGCCCAATAAATCATTAAGATTCGTTTTTA
ATAAAATAAATCTTATGTATTCACCGATTCCGTCGTTCCCATCACTTCTTGATTAATGGTTAGGT
CTTACTTTGACAGCGGAGCCCTTAATAAAATCCCCTAATAAAATAATGAAATTTGATGAAATTAG
TTCTTGAGTCAATCTTCTCAATCTTTATTGGCCCGAGACTCTTGATTTTTTTTGTTCCATGAACA
GCTTCCTTTAATTTGAATTAAATTTTCAATTAATTGAAAATTAATTGGTATTGATGCTTTATTAC
CTTGGCTTTTATGAGATGACTCATAGACCTTACATATTGGAATCC
Found at i:87490 original size:21 final size:20
Alignment explanation
Indices: 87483--87528 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
87473 CGAATTTATT
87483 TTTATTTATTTATTTAATTTA
1 TTTA-TTATTTATTTAATTTA
87504 TTTCATTATTTATTTAATTTA
1 TTT-ATTATTTATTTAATTTA
87525 TTTA
1 TTTA
87529 AAAGTCTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTATTATTTATTTAATTTA
Left flanking sequence: Indices 86983 -- 87482
AAAGTATTCTACCCGGTTTAGCGACAGCTACCCAATATTCGGGGGATCCTTTCCCCGAACCCATA
CGCGTTTCAGTGGGTCTTACGGTAACGGGTTTGTCGGGAAATATACGTACCCATATTTTTCCACC
GCGGCGCGCATTTCGTGTCATTGCCCGACGTCCCGCTTCGATTTGTCTAGATGTGATCCAGGCGG
GTTCAAGTGCCTGAAGAGCGTATTTACCGAAACAAATACGATTACCTCGATAAGATATTCCTTTC
ATTCTTCCTCTATGTTGTTTACGGAATCGCGTTCTTTTAGGGTTATAGTTGATGGTTCTTTCTCT
ACTCCATCTCTACTACAGAACTGAACATGAGAGTTTCTTCTCATTCAGCTCCTCGCGAATGAACT
GATTCAAATAAAAAAATCTATACATATACGTGTATATGTACGTAATTGATGAATAATATACTGAA
TCATGTGAATCTTTGAGAATTGACCTAATTTATTTCGAATTTATT
Right flanking sequence: Indices 87529 -- 88028
AAAGTCTTTATTATTATGATATTAGATTCCTTAAAGTTTAGGAATCCAATAACATAAAAATCTTC
GCGCGCGAATATTTACTCTTTCAATATTTACTTCAATTTGTAGGGTTAACCCACCATCTCTCAGA
ATAAATAGATTATTTCCTGGTTCGTTTCGCCATCCCGCCCAATAAATCATTAAGATTCGTTTTTA
ATAAAATAAATCTTATGTATTCACCGATTCCGTCGTTCCCATCACTTCTTGATTAATGGTTAGGT
CTTACTTTGACAGCGGAGCCCTTAATAAAATCCCCTAATAAAATAATGAAATTTGATGAAATTAG
TTCTTGAGTCAATCTTCTCAATCTTTATTGGCCCGAGACTCTTGATTTTTTTTGTTCCATGAACA
GCTTCCTTTAATTTGAATTAAATTTTCAATTAATTGAAAATTAATTGGTATTGATGCTTTATTAC
CTTGGCTTTTATGAGATGACTCATAGACCTTACATATTGGAATCC
Found at i:87503 original size:17 final size:16
Alignment explanation
Indices: 87483--87528 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
87473 CGAATTTATT
87483 TTTATTTATTTATTTAA
1 TTTATTTATTTATTT-A
87500 TTTATTTCA-TTATTTA
1 TTTATTT-ATTTATTTA
87516 TTTAATTTATTTA
1 TTT-ATTTATTTA
87529 AAAGTCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.19
17 20 0.77
18 1 0.04
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTTATTTATTTA
Left flanking sequence: Indices 86983 -- 87482
AAAGTATTCTACCCGGTTTAGCGACAGCTACCCAATATTCGGGGGATCCTTTCCCCGAACCCATA
CGCGTTTCAGTGGGTCTTACGGTAACGGGTTTGTCGGGAAATATACGTACCCATATTTTTCCACC
GCGGCGCGCATTTCGTGTCATTGCCCGACGTCCCGCTTCGATTTGTCTAGATGTGATCCAGGCGG
GTTCAAGTGCCTGAAGAGCGTATTTACCGAAACAAATACGATTACCTCGATAAGATATTCCTTTC
ATTCTTCCTCTATGTTGTTTACGGAATCGCGTTCTTTTAGGGTTATAGTTGATGGTTCTTTCTCT
ACTCCATCTCTACTACAGAACTGAACATGAGAGTTTCTTCTCATTCAGCTCCTCGCGAATGAACT
GATTCAAATAAAAAAATCTATACATATACGTGTATATGTACGTAATTGATGAATAATATACTGAA
TCATGTGAATCTTTGAGAATTGACCTAATTTATTTCGAATTTATT
Right flanking sequence: Indices 87529 -- 88028
AAAGTCTTTATTATTATGATATTAGATTCCTTAAAGTTTAGGAATCCAATAACATAAAAATCTTC
GCGCGCGAATATTTACTCTTTCAATATTTACTTCAATTTGTAGGGTTAACCCACCATCTCTCAGA
ATAAATAGATTATTTCCTGGTTCGTTTCGCCATCCCGCCCAATAAATCATTAAGATTCGTTTTTA
ATAAAATAAATCTTATGTATTCACCGATTCCGTCGTTCCCATCACTTCTTGATTAATGGTTAGGT
CTTACTTTGACAGCGGAGCCCTTAATAAAATCCCCTAATAAAATAATGAAATTTGATGAAATTAG
TTCTTGAGTCAATCTTCTCAATCTTTATTGGCCCGAGACTCTTGATTTTTTTTGTTCCATGAACA
GCTTCCTTTAATTTGAATTAAATTTTCAATTAATTGAAAATTAATTGGTATTGATGCTTTATTAC
CTTGGCTTTTATGAGATGACTCATAGACCTTACATATTGGAATCC
Found at i:87506 original size:34 final size:33
Alignment explanation
Indices: 87463--87528 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 33
87453 AGAATTGACC
*
87463 TAATTTATTTCGA-ATTTATTTTTATTTATTTATT
1 TAATTTATTTC-ATATTTA-TTTAATTTATTTATT
87497 TAATTTATTTCATTATTTATTTAATTTATTTA
1 TAATTTATTTCA-TATTTATTTAATTTATTTA
87529 AAAGTCTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 1 0.03
34 23 0.79
35 5 0.17
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.67
Consensus pattern (33 bp):
TAATTTATTTCATATTTATTTAATTTATTTATT
Left flanking sequence: Indices 86963 -- 87462
TGCTACTCCGTCCATTTCATAAAGTATTCTACCCGGTTTAGCGACAGCTACCCAATATTCGGGGG
ATCCTTTCCCCGAACCCATACGCGTTTCAGTGGGTCTTACGGTAACGGGTTTGTCGGGAAATATA
CGTACCCATATTTTTCCACCGCGGCGCGCATTTCGTGTCATTGCCCGACGTCCCGCTTCGATTTG
TCTAGATGTGATCCAGGCGGGTTCAAGTGCCTGAAGAGCGTATTTACCGAAACAAATACGATTAC
CTCGATAAGATATTCCTTTCATTCTTCCTCTATGTTGTTTACGGAATCGCGTTCTTTTAGGGTTA
TAGTTGATGGTTCTTTCTCTACTCCATCTCTACTACAGAACTGAACATGAGAGTTTCTTCTCATT
CAGCTCCTCGCGAATGAACTGATTCAAATAAAAAAATCTATACATATACGTGTATATGTACGTAA
TTGATGAATAATATACTGAATCATGTGAATCTTTGAGAATTGACC
Right flanking sequence: Indices 87529 -- 88028
AAAGTCTTTATTATTATGATATTAGATTCCTTAAAGTTTAGGAATCCAATAACATAAAAATCTTC
GCGCGCGAATATTTACTCTTTCAATATTTACTTCAATTTGTAGGGTTAACCCACCATCTCTCAGA
ATAAATAGATTATTTCCTGGTTCGTTTCGCCATCCCGCCCAATAAATCATTAAGATTCGTTTTTA
ATAAAATAAATCTTATGTATTCACCGATTCCGTCGTTCCCATCACTTCTTGATTAATGGTTAGGT
CTTACTTTGACAGCGGAGCCCTTAATAAAATCCCCTAATAAAATAATGAAATTTGATGAAATTAG
TTCTTGAGTCAATCTTCTCAATCTTTATTGGCCCGAGACTCTTGATTTTTTTTGTTCCATGAACA
GCTTCCTTTAATTTGAATTAAATTTTCAATTAATTGAAAATTAATTGGTATTGATGCTTTATTAC
CTTGGCTTTTATGAGATGACTCATAGACCTTACATATTGGAATCC
Found at i:89695 original size:15 final size:15
Alignment explanation
Indices: 89670--89704 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
89660 AGTTCGCTCT
89670 TTTAA-TTTTGAATA
1 TTTAATTTTTGAATA
89684 TTTAATTTTTGAATA
1 TTTAATTTTTGAATA
89699 -TTAATT
1 TTTAATT
89705 GAATAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (15 bp):
TTTAATTTTTGAATA
Left flanking sequence: Indices 89170 -- 89669
CTATACATATCATGAAATGTTGTATCTATGGACTTCTTTTTCTTTTTCCACCTTGATTTTCATTT
TATTAAGCTTATGTTAGACTCTTCATATTCTTCATAGAATTCATATAAAGCTATATTTTTTAATA
CAATAGTTATATGACAAGTTGGTCTTTTTATGAGATAATTCCGTCCACGAGCCCGAGGTTTAAAT
TTTTTAACATTCGTCCCTTCGTTGACTTCGACTTTACTAATGACAAAACTGGCTTCATTAAAATC
CATATTATGATTAGCATTTGTTACTGCAGAATAAATCAATTGAAAAATGGAATAACATGTTCGAT
AAGGCATGAGTTCGAGTATCATAAGTGTTTCCTCATAAGAACGCCCGCGAATTTGATCAATTATT
CTTCGTGCTTTGTAGGCGGATATAGATATATGTTGACCTAAAGTGTATACTTCTGTATATGGGTT
CTTTTTTCTTTTTTTTATCATAAGATTAACCTCTTAGTTCGCTCT
Right flanking sequence: Indices 89705 -- 90204
GAATAATTAATATTCAAAAATTAATGAATTACCGACGGGATTTATTATCATTTTTTGCATGACCC
TGGAAATTTAGACTAGGTGTAAATTCTCCCAATTTATGGCCCACCATACGATCTGTTATATAAAT
AGGTACATGTTCCTTTCCATTATAGATAGCAATAGTATGGCCAATCATTGTGGGTATAATGGTAG
ATGCTCGGGACCACGTTACTAGTATTTCTTTTTCCGCCTTTGTGTTAAGTTTATTTATTTTTCTT
AATAAATGATTTGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGTCAATTTCTCCTATTT
TTTTTTTTGAAAAGACGAAGAAACAAATTCTATTTTCTCTCCTATTTACTACGGCGACGAAGAAT
CAAATTATCACTATATTTATTCCTTTTTCTACTTCTTCTTCCAAGTGCAGGATAACCCCAAGGGG
TTGCGGGTTTTTTTCTACCAATTGGGGCCCTCCCTTCACCACCCC
Found at i:92449 original size:12 final size:12
Alignment explanation
Indices: 92432--92462 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
92422 CGATCAAGGG
92432 TGTAGTACTATT
1 TGTAGTACTATT
92444 TGTAGTACTATT
1 TGTAGTACTATT
92456 TGTAGTA
1 TGTAGTA
92463 GTGGTCCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.48
Consensus pattern (12 bp):
TGTAGTACTATT
Left flanking sequence: Indices 91932 -- 92431
GTTATGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATTGATACAGAG
CCAATTCCAATAGACTTATTGGAAGGTCCCATTGGCGTGCATCCAGTAGGAATTGAACCTACGAA
TTCGCCAATTATGAGTTGGGCGCTTTAACCATTCAGCCATGGATGCTTAGCGGGGATCCTCGTAC
ATGGTGAATAACCAAATTCCAATTGAACTAAAATTTTGAGGATAAATCAATCCAATTTCGGAGGA
ATCAATGAAAGGACATCAAGTCAAATCCTGGATTTTCGAATTGAGAGAGATATTGAGAGAGATCA
AGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACATT
TTTTTCCATCAAGAACGTTTTATAAAACTCTTGGATTCCCGAATTTGGAGTATCCTACTTTCACG
CAATTCACAGAGTTCAACAAGCAATCGATATTTCACGATCAAGGG
Right flanking sequence: Indices 92463 -- 92962
GTGGTCCTTATATATCGTATTAACAATCGAAAGATGGTCGAAAGAAAAAATCTCTATTTGACGGG
GCTTCTTCCTATACCTATGAATTCCATTGGACCCAGAAATGATACATTGGAAGAATCCTTTGGGT
CTTCCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGT
TTCCTGGATCCGAAAGAGAGTACTCGGGTTCTCCCAATAACTAAAAAGTGTATCATGTCTGAATC
TAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCTAGTTGTAAGATAT
CTAATGAAACTGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATCTGGAGTTT
CTTTTTGTATATTATATGGATGATCCAATCCGCAAGGACCCTGATTGGGAATTGTTTGATCGTCT
TTCTCCGAGGAAGGGTCGAAACATAATCAACTTGAATTCGGGACA
Found at i:94827 original size:24 final size:21
Alignment explanation
Indices: 94799--94888 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
94789 ACAAAAAAGA
*
94799 TTTGTCTAAGTCACTTCCTTTCTT
1 TTTGTCCAAGTCACTT-C-TT-TT
*
94823 TTTGTCCAAGTTACTTCTTTT
1 TTTGTCCAAGTCACTTCTTTT
**
94844 TTTGTCCAAGTTTCTTCTTTT
1 TTTGTCCAAGTCACTTCTTTT
* * *
94865 TTTGTCTAACTCACTTCCTTT
1 TTTGTCCAAGTCACTTCTTTT
94886 TTT
1 TTT
94889 CTTTGTGAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
21 41 0.71
22 2 0.03
23 1 0.02
24 14 0.24
ACGTcount: A:0.12, C:0.22, G:0.08, T:0.58
Consensus pattern (21 bp):
TTTGTCCAAGTCACTTCTTTT
Left flanking sequence: Indices 94299 -- 94798
GAAGATCCAAAACAAAAAAGAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATA
TGGATTGATCCGAAATCTGATTCAAATCCAATATAGCACCTATGGGTACATAAGAAATGTATTGA
ATCAATTCTTTTTAATGAATCGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATA
GGAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATCGAATTT
GACACAGAGTCAGAAGAAATGGTTCGATCTTCTTTTTTTTCTTTCTCGAACCGAGAGATCCATGA
ATTGGGATCCTAATGCATATAGATACAAATGGTCTAATGGGAGCAAGAAGTTCCAGGAACATTTG
GAACATTTCATTTCTGAGCAGAAGAGCCGTTTTCTTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 94889 -- 95388
CTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGATTCATATCTATGAATTGAAAGGTT
CGAATGATCAACTCTGCAATCAGCTGTTAGAACCAATAGGTCTTCAAATCGTTCATTTGAAAAAA
TTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATCGAAATTTTTGATCAATGGAGG
AACAATATCACTATTTTTGTTCAATAATAAGATACTAAAGTGGATGATTGACTCATTCCATACTA
GAAATAATAAATCTTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAAT
TGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAATCG
ACTTCGATTCTTGAATAATCTACATCACTTCTGTTTCTATTGTAACAAAAGATTCCCTTTTTATG
TGGAAAAGGCCCGTATCAAGAATTATGATTTTACGTATGGACAAT
Found at i:94847 original size:21 final size:21
Alignment explanation
Indices: 94821--94888 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
94811 ACTTCCTTTC
94821 TTTTTGTCCAAGTTACTTCTT
1 TTTTTGTCCAAGTTACTTCTT
*
94842 TTTTTGTCCAAGTTTCTTCTT
1 TTTTTGTCCAAGTTACTTCTT
* * * *
94863 TTTTTGTCTAACTCACTTCCT
1 TTTTTGTCCAAGTTACTTCTT
94884 TTTTT
1 TTTTT
94889 CTTTGTGAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.12, C:0.21, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTTTGTCCAAGTTACTTCTT
Left flanking sequence: Indices 94321 -- 94820
TGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATATGGATTGATCCGAAATCTGATT
CAAATCCAATATAGCACCTATGGGTACATAAGAAATGTATTGAATCAATTCTTTTTAATGAATCG
ATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATACTCTGAATCATA
GAACTATAATGAAATATACGATCAACCAACATTTATCGAATTTGACACAGAGTCAGAAGAAATGG
TTCGATCTTCTTTTTTTTCTTTCTCGAACCGAGAGATCCATGAATTGGGATCCTAATGCATATAG
ATACAAATGGTCTAATGGGAGCAAGAAGTTCCAGGAACATTTGGAACATTTCATTTCTGAGCAGA
AGAGCCGTTTTCTTTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATTGG
TCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTCCTTTC
Right flanking sequence: Indices 94889 -- 95388
CTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGATTCATATCTATGAATTGAAAGGTT
CGAATGATCAACTCTGCAATCAGCTGTTAGAACCAATAGGTCTTCAAATCGTTCATTTGAAAAAA
TTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATCGAAATTTTTGATCAATGGAGG
AACAATATCACTATTTTTGTTCAATAATAAGATACTAAAGTGGATGATTGACTCATTCCATACTA
GAAATAATAAATCTTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAAT
TGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAATCG
ACTTCGATTCTTGAATAATCTACATCACTTCTGTTTCTATTGTAACAAAAGATTCCCTTTTTATG
TGGAAAAGGCCCGTATCAAGAATTATGATTTTACGTATGGACAAT
Found at i:97264 original size:18 final size:17
Alignment explanation
Indices: 97241--97297 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 17
97231 AGGGTTTTCT
97241 TATTGATGATAGTGACGA
1 TATTGATG-TAGTGACGA
97259 TATTGATGCTAGTGACGA
1 TATTGATG-TAGTGACGA
97277 TATTGATGTGAGTGACGA
1 TATTGATGT-AGTGACGA
97295 TAT
1 TAT
97298 CGACCGTGAC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
17 1 0.03
18 36 0.97
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.35
Consensus pattern (17 bp):
TATTGATGTAGTGACGA
Left flanking sequence: Indices 96741 -- 97240
GTCGCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAAC
GACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATG
ACTCTGGTTATCAAATGATTGAAGAGCCGGGAGCAATTTACTTACGATACTTAGTTGACATTCAT
AAAAAGTATCTAATGAATTATGAGTTCAATACACTCTGTTTAGCAGAAAGACGGATATTCCTTGC
TCATTATCAGACAATCACTTATTCACAAACCTCGTGTGGGGCGAATAGTTTTCATTTCCCATCTC
ATGGAAAACCCTTTTCGCTCCGCTTAGCCCTATCCCCCTCTAGGGGTATTTTAGTGATAGGTTCT
ATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTAC
AGTATTTCTGAACAAGTTCCTGGATAATAAGCCTAAGGGTTTTCT
Right flanking sequence: Indices 97298 -- 97797
CGACCGTGACCTTGATACGGAGCTGGAGCTTCTAACTAGGATGAATGCGCTAACTATGGATATGA
TGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGC
ATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCT
ATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATGGCTT
CGACTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATT
AAGATACGAAGGCTTCTTATTCCACAACAACGAAAGTACTTTTTCACTCTTTCATATACTAGGGG
ATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATG
TACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTA
Found at i:99461 original size:12 final size:12
Alignment explanation
Indices: 99444--99468 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99434 TTGGTTTAAC
99444 TGAATAACTAAA
1 TGAATAACTAAA
99456 TGAATAACTAAA
1 TGAATAACTAAA
99468 T
1 T
99469 AAAATAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (12 bp):
TGAATAACTAAA
Left flanking sequence: Indices 98944 -- 99443
TATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATG
ACAAGGGCATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGAAAATTGGATTCATGTAATA
GGAGAAAGGTTTCCCATTCCTTAGCCTGAAAGATATGTGGCCATGAAATAGGGATTAAGTGGAAC
AGAATTGACTGGGTGGTAGAGTCGTGGAAACACCGGTTTCTTCCATATTTTGGATTTTGGACATG
GAACAATATGTTACTGCGGAAACATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGAT
GGTATGAACTGCCTAAACAAGAATTCTTGAACAGCGAGCAACCAGAGCTATTACTCACTACATCA
AAAAATTTCCATTAATGAAAGATGTAAATCCATTGGAAAATCAAAAATACGTATGTCGGATGAAA
TGGTGGTTGTTGCTATCTGCTCCAATAACGAATCATTGGTTTAAC
Right flanking sequence: Indices 99469 -- 99968
AAAATAGATAGACCCTTCTCTTCGTCTCCGGTCGATGGATCTTCTCAATCTCAATTGGAAGATCC
CCTATATGGATAATACACATTCCAGTTGACCGCGGGCCTAATTGTTTTGTTCCGAAGCAAAGATA
TCCACGGGGGAGAAGGAAGGCTGGAATGCCAACAGACGTCTATTATTGATATTGAATTCACCCGA
CCCGAGAGTCCCCATTTTTTTTTTGGGGGGGGGGGGACATCCAGTGCCAAAGTCACTGAATGGGT
AAGTCGCCAATCCCTAAAACGGACTATGTAATGTACTTTACCTGTTGGGTTACGGGCGGGCATTT
TACCAGAGGTTTCTATTGTATCAATCTACCCTTGTGTAATTCCTGTTGAAGCATATACTCGGGGG
TGGTTGCAGGGCGGACGATTTCAAATTTCAAAACGGACTCCCCATTCATTAGATAGAGAAGATCA
CCAAGATTTCTTGATCCGCTGCCGAACTTATTGAATTGCTCATTC
Found at i:100251 original size:14 final size:14
Alignment explanation
Indices: 100232--100259 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100222 CGGAAGATGC
100232 CTTATCTTATATAT
1 CTTATCTTATATAT
100246 CTTATCTTATATAT
1 CTTATCTTATATAT
100260 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (14 bp):
CTTATCTTATATAT
Left flanking sequence: Indices 99732 -- 100231
TCGCCAATCCCTAAAACGGACTATGTAATGTACTTTACCTGTTGGGTTACGGGCGGGCATTTTAC
CAGAGGTTTCTATTGTATCAATCTACCCTTGTGTAATTCCTGTTGAAGCATATACTCGGGGGTGG
TTGCAGGGCGGACGATTTCAAATTTCAAAACGGACTCCCCATTCATTAGATAGAGAAGATCACCA
AGATTTCTTGATCCGCTGCCGAACTTATTGAATTGCTCATTCAATGAGCATTCTCAATATTATGC
CTTGAAGAGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATT
TCACCACCAAGGCATCTTGAAAGTAAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGT
ATGGAATATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCC
GAGTCGGACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGC
Right flanking sequence: Indices 100260 -- 100759
ATATATTATATAATATATATTCTATTTATATTTATATCAAAATTATATCAAAATATCAAAATTAT
ATCAAAATATCAAAAAATGGACAATCAAACCCATTTCTCGATTCAATAGAAGCCCAAAGAGGTGA
ATAGAATAGGGTCCCAAATAAGGAGAGATATATATGTAAAAAGCAGGTCCGATTACGCCTATTCC
TAATCCTAAATGGAATGTAACGACGGAGGGATCCATATGTAAACATAGTATCTATTTAGATACGC
TCGAATGACCCCTTCTTATTCTTATTTCTTATTCTTATAATGAGAATGTATATAAGCCTATTCCG
GTCTGGTCCGGTATGGAATGAACTTATAATCATGGAATCGACTCGATTATCAGATTATAGATTAT
AAGTTCATAACCCTAGCCCATTCCCCTTTTGGGCGGAACAGATCTACTAATTCTTTGATTCCAGT
TAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGAAGCTAAA
Found at i:100262 original size:18 final size:17
Alignment explanation
Indices: 100239--100297 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 17
100229 TGCCTTATCT
100239 TATATATCTTATCTTATA
1 TATATATCTTAT-TTATA
* *
100257 TATATATATTATATA-A
1 TATATATCTTATTTATA
100273 TATATAT-TCTATTTATA
1 TATATATCT-TATTTATA
*
100290 TTTATATC
1 TATATATC
100298 AAAATTATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 1 0.03
16 13 0.38
17 9 0.26
18 11 0.32
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATATCTTATTTATA
Left flanking sequence: Indices 99739 -- 100238
TCCCTAAAACGGACTATGTAATGTACTTTACCTGTTGGGTTACGGGCGGGCATTTTACCAGAGGT
TTCTATTGTATCAATCTACCCTTGTGTAATTCCTGTTGAAGCATATACTCGGGGGTGGTTGCAGG
GCGGACGATTTCAAATTTCAAAACGGACTCCCCATTCATTAGATAGAGAAGATCACCAAGATTTC
TTGATCCGCTGCCGAACTTATTGAATTGCTCATTCAATGAGCATTCTCAATATTATGCCTTGAAG
AGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCAC
CAAGGCATCTTGAAAGTAAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGTATGGAAT
ATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGAGTCGG
ACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATCT
Right flanking sequence: Indices 100298 -- 100797
AAAATTATATCAAAATATCAAAATTATATCAAAATATCAAAAAATGGACAATCAAACCCATTTCT
CGATTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGGTCCCAAATAAGGAGAGATATATATGTA
AAAAGCAGGTCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGGAGGGATCCATAT
GTAAACATAGTATCTATTTAGATACGCTCGAATGACCCCTTCTTATTCTTATTTCTTATTCTTAT
AATGAGAATGTATATAAGCCTATTCCGGTCTGGTCCGGTATGGAATGAACTTATAATCATGGAAT
CGACTCGATTATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCCTTTTGGGCGGAA
CAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGA
AGCTAAAAAAGGGTATCTTGAGCAATTTCAATAATCGGGTTCATT
Found at i:100293 original size:6 final size:7
Alignment explanation
Indices: 100238--100296 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
100228 ATGCCTTATC
100238 TTATATA
1 TTATATA
*
100245 TCT-TATC
1 T-TATATA
100252 TTATATA
1 TTATATA
100259 -TATATA
1 TTATATA
100265 TTATATA
1 TTATATA
*
100272 ATATATA
1 TTATATA
*
100279 TTCTAT-
1 TTATATA
100285 TTATAT-
1 TTATATA
100291 TTATAT
1 TTATAT
100297 CAAAATTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
6 18 0.42
7 24 0.56
8 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (7 bp):
TTATATA
Left flanking sequence: Indices 99738 -- 100237
ATCCCTAAAACGGACTATGTAATGTACTTTACCTGTTGGGTTACGGGCGGGCATTTTACCAGAGG
TTTCTATTGTATCAATCTACCCTTGTGTAATTCCTGTTGAAGCATATACTCGGGGGTGGTTGCAG
GGCGGACGATTTCAAATTTCAAAACGGACTCCCCATTCATTAGATAGAGAAGATCACCAAGATTT
CTTGATCCGCTGCCGAACTTATTGAATTGCTCATTCAATGAGCATTCTCAATATTATGCCTTGAA
GAGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCA
CCAAGGCATCTTGAAAGTAAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGTATGGAA
TATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGAGTCG
GACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATC
Right flanking sequence: Indices 100297 -- 100796
CAAAATTATATCAAAATATCAAAATTATATCAAAATATCAAAAAATGGACAATCAAACCCATTTC
TCGATTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGGTCCCAAATAAGGAGAGATATATATGT
AAAAAGCAGGTCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGGAGGGATCCATA
TGTAAACATAGTATCTATTTAGATACGCTCGAATGACCCCTTCTTATTCTTATTTCTTATTCTTA
TAATGAGAATGTATATAAGCCTATTCCGGTCTGGTCCGGTATGGAATGAACTTATAATCATGGAA
TCGACTCGATTATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCCTTTTGGGCGGA
ACAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAG
AAGCTAAAAAAGGGTATCTTGAGCAATTTCAATAATCGGGTTCAT
Found at i:100305 original size:11 final size:11
Alignment explanation
Indices: 100291--100332 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
100281 CTATTTATAT
100291 TTATATCAAAA
1 TTATATCAAAA
100302 TTATATC-AAA
1 TTATATCAAAA
100312 --ATATCAAAA
1 TTATATCAAAA
100321 TTATATCAAAA
1 TTATATCAAAA
100332 T
1 T
100333 ATCAAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 5 0.18
9 3 0.11
10 3 0.11
11 17 0.61
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.36
Consensus pattern (11 bp):
TTATATCAAAA
Left flanking sequence: Indices 99791 -- 100290
TTTTACCAGAGGTTTCTATTGTATCAATCTACCCTTGTGTAATTCCTGTTGAAGCATATACTCGG
GGGTGGTTGCAGGGCGGACGATTTCAAATTTCAAAACGGACTCCCCATTCATTAGATAGAGAAGA
TCACCAAGATTTCTTGATCCGCTGCCGAACTTATTGAATTGCTCATTCAATGAGCATTCTCAATA
TTATGCCTTGAAGAGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCT
ACCATTTCACCACCAAGGCATCTTGAAAGTAAATCGTATTCCATGAATATGATATCTATCTAGTG
TGATGTATGGAATATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTCATAT
AGGCCCGAGTCGGACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATCTTATATAT
CTTATCTTATATATATATATTATATAATATATATTCTATTTATAT
Right flanking sequence: Indices 100333 -- 100832
ATCAAAAAATGGACAATCAAACCCATTTCTCGATTCAATAGAAGCCCAAAGAGGTGAATAGAATA
GGGTCCCAAATAAGGAGAGATATATATGTAAAAAGCAGGTCCGATTACGCCTATTCCTAATCCTA
AATGGAATGTAACGACGGAGGGATCCATATGTAAACATAGTATCTATTTAGATACGCTCGAATGA
CCCCTTCTTATTCTTATTTCTTATTCTTATAATGAGAATGTATATAAGCCTATTCCGGTCTGGTC
CGGTATGGAATGAACTTATAATCATGGAATCGACTCGATTATCAGATTATAGATTATAAGTTCAT
AACCCTAGCCCATTCCCCTTTTGGGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAGA
GGGATCTTGAACTAAGAAATAGATTCTAGAAGCTAAAAAAGGGTATCTTGAGCAATTTCAATAAT
CGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATAC
Found at i:100315 original size:19 final size:19
Alignment explanation
Indices: 100293--100339 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
100283 ATTTATATTT
100293 ATATCAAAATTATATCAAA
1 ATATCAAAATTATATCAAA
100312 ATATCAAAATTATATCAAA
1 ATATCAAAATTATATCAAA
100331 ATATCAAAA
1 ATATCAAAA
100340 AATGGACAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.30
Consensus pattern (19 bp):
ATATCAAAATTATATCAAA
Left flanking sequence: Indices 99793 -- 100292
TTACCAGAGGTTTCTATTGTATCAATCTACCCTTGTGTAATTCCTGTTGAAGCATATACTCGGGG
GTGGTTGCAGGGCGGACGATTTCAAATTTCAAAACGGACTCCCCATTCATTAGATAGAGAAGATC
ACCAAGATTTCTTGATCCGCTGCCGAACTTATTGAATTGCTCATTCAATGAGCATTCTCAATATT
ATGCCTTGAAGAGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTAC
CATTTCACCACCAAGGCATCTTGAAAGTAAATCGTATTCCATGAATATGATATCTATCTAGTGTG
ATGTATGGAATATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTCATATAG
GCCCGAGTCGGACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATCTTATATATCT
TATCTTATATATATATATTATATAATATATATTCTATTTATATTT
Right flanking sequence: Indices 100340 -- 100839
AATGGACAATCAAACCCATTTCTCGATTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGGTCCC
AAATAAGGAGAGATATATATGTAAAAAGCAGGTCCGATTACGCCTATTCCTAATCCTAAATGGAA
TGTAACGACGGAGGGATCCATATGTAAACATAGTATCTATTTAGATACGCTCGAATGACCCCTTC
TTATTCTTATTTCTTATTCTTATAATGAGAATGTATATAAGCCTATTCCGGTCTGGTCCGGTATG
GAATGAACTTATAATCATGGAATCGACTCGATTATCAGATTATAGATTATAAGTTCATAACCCTA
GCCCATTCCCCTTTTGGGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCT
TGAACTAAGAAATAGATTCTAGAAGCTAAAAAAGGGTATCTTGAGCAATTTCAATAATCGGGTTC
ATTGATATTCCTGGTATAGTAGATGCTATCACACATACAATCATA
Found at i:100550 original size:13 final size:13
Alignment explanation
Indices: 100532--100557 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
100522 GAATGACCCC
100532 TTCTTATTCTTAT
1 TTCTTATTCTTAT
100545 TTCTTATTCTTAT
1 TTCTTATTCTTAT
100558 AATGAGAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TTCTTATTCTTAT
Left flanking sequence: Indices 100032 -- 100531
TTTTGAGTCTCGCGTGTCTACCATTTCACCACCAAGGCATCTTGAAAGTAAATCGTATTCCATGA
ATATGATATCTATCTAGTGTGATGTATGGAATATATGACAAAGGCGGAGTCTTGGAGTATTTCTA
TTGATCGGTCATGTCATATAGGCCCGAGTCGGACATCCAATTGCTTCGATTTGAATTATCCGGAA
GATGCCTTATCTTATATATCTTATCTTATATATATATATTATATAATATATATTCTATTTATATT
TATATCAAAATTATATCAAAATATCAAAATTATATCAAAATATCAAAAAATGGACAATCAAACCC
ATTTCTCGATTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGGTCCCAAATAAGGAGAGATATA
TATGTAAAAAGCAGGTCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGGAGGGAT
CCATATGTAAACATAGTATCTATTTAGATACGCTCGAATGACCCC
Right flanking sequence: Indices 100558 -- 101057
AATGAGAATGTATATAAGCCTATTCCGGTCTGGTCCGGTATGGAATGAACTTATAATCATGGAAT
CGACTCGATTATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCCTTTTGGGCGGAA
CAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGA
AGCTAAAAAAGGGTATCTTGAGCAATTTCAATAATCGGGTTCATTGATATTCCTGGTATAGTAGA
TGCTATCACACATACAATCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTAT
AATTTCGCACGTGAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGA
TAATAGTAGAGAGAAACAACGCTCGTAAGGAGTCCTATTGAAACCAAAAAATATAGGCCTGCCTG
CCATCCACACCAGAATAAATGGAGTTTTCCGAAAAAACCTGCTAG
Found at i:105083 original size:14 final size:14
Alignment explanation
Indices: 105044--105083 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
105034 TTATAATTAT
*
105044 ATTAT-TTATTTGA
1 ATTATATTATTTTA
*
105057 ATTCTATTATTTTA
1 ATTATATTATTTTA
105071 ATTATATTATTTT
1 ATTATATTATTTT
105084 TCCCTCTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (14 bp):
ATTATATTATTTTA
Left flanking sequence: Indices 104544 -- 105043
CAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTG
GAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCATACATGAGATTTTCACCTC
ATACGGCTCCTCGTTCAATTCTTTCAAAGTCATTGGATCCTTTTCCTCGTTCGAGAAGCTCCTCC
CTTCCTCCACTCCGTCCCGAAGAGTAACTAGGACAAATTCAGTCACGTTTTCATGTTCCAATTGA
ACACTTTCCTTTTTTGATTATTCTCAAAGGAGAAGATTCTTCTTTTTACCAAACATCTGCGGATC
CAATCACGATCTTATAATAAGAACAAGAAATCTTTCTCGATCAATCCCTTTGCCCCTCATTCTTC
GAGAATCAGAAATATTTTTTTTTTCAAGTTTGAATTTGTTCATTTGGAATCTGGGCTCTTCTACT
TCATTTTTATTTATTTTTTTTTTTTTTTATTATTCTTATAATTAT
Right flanking sequence: Indices 105084 -- 105583
TCCCTCTCTTTTCTTTTTTTATTCCCTTCCGTCATTCCTTAAGTCCCATAGGTTTGATCCTGTAG
AATCTAACCCATTTTCTCATTAAGCGAAGGGTACAAAATAAATCAGATTGATTTTTCGATCAAAA
GTACTATGTGAAATCTTCGGTTTTTTCCTCTTTCGCTATCCCTATCCCATAGGTACAGCGTTTGA
ATCAATAGAGAACCTTTTCTTCTATATCTGTATGAATCGATATTATTCCATTCCAATTCCTTCTC
GACACCTCCCAAGGAAAACCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATG
CGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGG
TCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGC
GTAAAGCACGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAA
Found at i:105622 original size:23 final size:24
Alignment explanation
Indices: 105592--105636 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
105582 AAGACAGTTC
105592 TTTTCTATTCTATTAGT-TTAGTA
1 TTTTCTATTCTATTAGTATTAGTA
105615 TTTTCTATTCTATTAGTATTAG
1 TTTTCTATTCTATTAGTATTAG
105637 ATTAGTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.60
Consensus pattern (24 bp):
TTTTCTATTCTATTAGTATTAGTA
Left flanking sequence: Indices 105092 -- 105591
TTTTCTTTTTTTATTCCCTTCCGTCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTAAC
CCATTTTCTCATTAAGCGAAGGGTACAAAATAAATCAGATTGATTTTTCGATCAAAAGTACTATG
TGAAATCTTCGGTTTTTTCCTCTTTCGCTATCCCTATCCCATAGGTACAGCGTTTGAATCAATAG
AGAACCTTTTCTTCTATATCTGTATGAATCGATATTATTCCATTCCAATTCCTTCTCGACACCTC
CCAAGGAAAACCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATG
CACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAG
ATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCA
CGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTC
Right flanking sequence: Indices 105637 -- 106136
ATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAG
TCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGGCTCAGCGAGAAGAGGATTGTACCATGAG
AGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGA
CTCCCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAG
GATAGCAAGTTACAAATTCTGTCTCGGTAGGATAGACATGTATTTTATTTCTATTACTATGAAAT
TCATAAATGAAGTAGTTAATAAATGAAATAGTTAATGGTGGGGTTACCATTATCCTTTTTGTAGT
GACGAATCTTGTATGTGTTCCTAAGAAAAGGAATTTGTCCATTTTTCGGGGTCTCAAAGGGGCGT
GGAAACGCATAAGAACTCTTGAATGGAAATGGAAAAGAGATGTAA
Found at i:105985 original size:16 final size:16
Alignment explanation
Indices: 105964--105997 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
105954 TATGAAATTC
*
105964 ATAAATGAAGTAGTTA
1 ATAAATGAAATAGTTA
105980 ATAAATGAAATAGTTA
1 ATAAATGAAATAGTTA
105996 AT
1 AT
105998 GGTGGGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (16 bp):
ATAAATGAAATAGTTA
Left flanking sequence: Indices 105464 -- 105963
CTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCC
GATCGATTGCGTAAAGCACGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTT
TTCTATTCTATTAGTTTAGTATTTTCTATTCTATTAGTATTAGATTAGTATTAGTTAGTGATCCC
GGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTACATTTTGTCTCTGTGGA
CCGAGGAGAAAGGGGCTCAGCGAGAAGAGGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCT
TTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGACTCCCATGTCGATCCGAATGAA
TCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGT
CTCGGTAGGATAGACATGTATTTTATTTCTATTACTATGAAATTC
Right flanking sequence: Indices 105998 -- 106497
GGTGGGGTTACCATTATCCTTTTTGTAGTGACGAATCTTGTATGTGTTCCTAAGAAAAGGAATTT
GTCCATTTTTCGGGGTCTCAAAGGGGCGTGGAAACGCATAAGAACTCTTGAATGGAAATGGAAAA
GAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAAGGGTTGATCCG
TATCATCTTGACTTGGTTCTGATTTCTCTATTTATTTAAGAATACCGAGCCGGGGTCTTCTCCTA
CCCGTATCAAATAGAACATGTTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGG
GAAAATCATACGCTTTTATGAAACCATGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTCCGA
TAGGAGCAGTTGACAATTGAATCCAATTTTTCCCATTATTTTATTTTCGTATCCGTAATAGTGCG
AAAAGAGGGTCCGACTCCAAGTTGTTCAAGAATAGTGGCGTTGAG
Found at i:119209 original size:19 final size:19
Alignment explanation
Indices: 119185--119224 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
119175 TTTATATCTA
119185 ATTTATTTTATAAATAATT
1 ATTTATTTTATAAATAATT
119204 ATTTATTTTATAAATAATT
1 ATTTATTTTATAAATAATT
119223 AT
1 AT
119225 AGCAAAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTATTTTATAAATAATT
Left flanking sequence: Indices 118685 -- 119184
GGGTCGATCAAGTGTCCAAACTCTAAAGAAAAATCATTATTGATGGTCCAAGACCATACATATTG
ATAGATAGAACTGCTACTGATTTGTTGAATAGACAAATCTATCGAAAAAATCATAACTATACTTA
ACAATAAAACACTTGGAAAAACCCACATACGACGAAATTTTTTTGTTGCTGTCGGAAAAAATAGG
AGTCCCGCTCCTATTACCATAGGGACTGGAAGTGTAACAAAAGATATGATCCATGAATATTGATA
TGTATGTTCCATAAAAAAATCTTATTAGTTTTAATTAATAATTAATTGTTTCTTGTTTCTGAACT
TAAATAGAATTTTCTATTCTTAATTATTCTAAATCTTTTTCAAATACGTCACATATTCAAATCAA
GAAGTCGGAAGTGGTTAAATTATATAACCAAAATACTAGGGAAAAAATATTTTTTCTAAAGAAAA
TGAAAATTTCAATTATTATTTATAGATTACAAAAATTTATATCTA
Right flanking sequence: Indices 119225 -- 119724
AGCAAAACTAGTATTTGATTTTTAATAGGAATAAGAAAAAAAGATAATTTTTTTTAATTGCTTTA
TTCATAATCATTAATTAGTGCATTTTGGGATTGATTTGTGGTCTTGTATTCATTATGTTTGTAAA
AAATACTACGATATTTGATTTGACATTTGACCTTTAATAGGATAAAAAGAAAAAATTAGTAAAAT
TTTTTACATAGTATATCCTTTATCAATCCTATATTTATATTTTTTAACAAATTCACTAATAGTTT
CATTTGAGTTTGAAAATGGAATTTCAATTAGGTATACTTTTTCTTTGAGCTTGACTATTTACTCG
AAAAAAGATTAAAGTTTTTTTATTAGGATAAATAGGATTTAAGTTCTTAAATTCTTTGATGGATT
TTATTACATGTATAAATAGAATAGGACGAAAAAGTAAAGAAATAGAAATCGAAATGAAATGTAAG
CAGACAGACTTTTTTATAAACAGAATAGACTTTGGAAACTAAATC
Found at i:120052 original size:12 final size:12
Alignment explanation
Indices: 120035--120070 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
120025 GTGTTTTTTG
120035 TTTATTGTTTAT
1 TTTATTGTTTAT
* *
120047 TTTATTGGTTAG
1 TTTATTGTTTAT
120059 TTTATTGTTTAT
1 TTTATTGTTTAT
120071 GATATTTTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (12 bp):
TTTATTGTTTAT
Left flanking sequence: Indices 119535 -- 120034
TTGACTATTTACTCGAAAAAAGATTAAAGTTTTTTTATTAGGATAAATAGGATTTAAGTTCTTAA
ATTCTTTGATGGATTTTATTACATGTATAAATAGAATAGGACGAAAAAGTAAAGAAATAGAAATC
GAAATGAAATGTAAGCAGACAGACTTTTTTATAAACAGAATAGACTTTGGAAACTAAATCGATAG
ATAATGAATAAAATACTAAAGAACAATTTTTTTTTGAACAATAGATGTCTTTCACATCCAACTAT
AAGAAAAAATTTCTTCATTCTTGAAATGGCAGTTCCAAAAAAGCATACTTCTATATCAAAAAAGC
GTATTCGAAAAAATATTTGGAAAAGAAAGGGATATTGGGCAGCCTTGAAAGCTTTGTCGTTAGCA
AAATCTCTTTCTACTAATAATTCAAAAAGTTTTTTTGTGCGACAAATAAAAAATCAAACGGTGGA
ATAATCTGACTCCCTTTGACGTAAGGAAAGTTCTAGTGTTTTTTG
Right flanking sequence: Indices 120071 -- 120570
GATATTTTATATTTTTATATTATAATATAAAATATTAAATATAAAATATTAAATATAAAATAGAA
AAAAGAATTCTATTCTTGAATGTTTTGAATTAATCAATGAATTAATCAATATTAAATTGAACTCA
TTTCATTTTTATCCTATCATATGTAGAATTATCATATGTCAAATAAAAATATGTCAAATAAAAAT
TTTTTTGTTTAAGAAGTTTTAAAAACAATACTTTTTTTTTTTGTTTTCAAAAAAAAAGAATAATA
AAGCAAAGACCCGAAGCAAAGACACAAAGTTTCACTTTTTTTTTTTTCTTTTTAGTATAGTGTAA
TATTTACAAGATGGGGATTTTTATTTTCCCCATCGGCCTACTTGTCACAATTCCACACAATTCCA
ATAATAAATATAAATATTGATTCCAATACTTCCAATACTAAAATAAGAAATATTGATAAGTTTTG
TCTTCTTTCTATTTATACTATTTGAATAAAAAAAAGCATATCTAC
Found at i:120104 original size:7 final size:7
Alignment explanation
Indices: 120094--120137 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
120084 TTTATATTAT
120094 AATATAA
1 AATATAA
*
120101 AATATTA
1 AATATAA
120108 AATATAA
1 AATATAA
*
120115 AATATTA
1 AATATAA
120122 AATATAA
1 AATATAA
*
120129 AATAGAA
1 AATATAA
120136 AA
1 AA
120138 AAGAATTCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (7 bp):
AATATAA
Left flanking sequence: Indices 119594 -- 120093
TCTTAAATTCTTTGATGGATTTTATTACATGTATAAATAGAATAGGACGAAAAAGTAAAGAAATA
GAAATCGAAATGAAATGTAAGCAGACAGACTTTTTTATAAACAGAATAGACTTTGGAAACTAAAT
CGATAGATAATGAATAAAATACTAAAGAACAATTTTTTTTTGAACAATAGATGTCTTTCACATCC
AACTATAAGAAAAAATTTCTTCATTCTTGAAATGGCAGTTCCAAAAAAGCATACTTCTATATCAA
AAAAGCGTATTCGAAAAAATATTTGGAAAAGAAAGGGATATTGGGCAGCCTTGAAAGCTTTGTCG
TTAGCAAAATCTCTTTCTACTAATAATTCAAAAAGTTTTTTTGTGCGACAAATAAAAAATCAAAC
GGTGGAATAATCTGACTCCCTTTGACGTAAGGAAAGTTCTAGTGTTTTTTGTTTATTGTTTATTT
TATTGGTTAGTTTATTGTTTATGATATTTTATATTTTTATATTAT
Right flanking sequence: Indices 120138 -- 120637
AAGAATTCTATTCTTGAATGTTTTGAATTAATCAATGAATTAATCAATATTAAATTGAACTCATT
TCATTTTTATCCTATCATATGTAGAATTATCATATGTCAAATAAAAATATGTCAAATAAAAATTT
TTTTGTTTAAGAAGTTTTAAAAACAATACTTTTTTTTTTTGTTTTCAAAAAAAAAGAATAATAAA
GCAAAGACCCGAAGCAAAGACACAAAGTTTCACTTTTTTTTTTTTCTTTTTAGTATAGTGTAATA
TTTACAAGATGGGGATTTTTATTTTCCCCATCGGCCTACTTGTCACAATTCCACACAATTCCAAT
AATAAATATAAATATTGATTCCAATACTTCCAATACTAAAATAAGAAATATTGATAAGTTTTGTC
TTCTTTCTATTTATACTATTTGAATAAAAAAAAGCATATCTACTAGGATCTTTAGTCAAAAATAA
TGGATTAACTTTCAACCTTATTTTGTAACTTTCTTAAGAATTATT
Found at i:120113 original size:14 final size:14
Alignment explanation
Indices: 120087--120132 Score: 83
Period size: 14 Copynumber: 3.2 Consensus size: 14
120077 TTATATTTTT
120087 ATATTATAATATAAA
1 ATATTA-AATATAAA
120102 ATATTAAATATAAA
1 ATATTAAATATAAA
120116 ATATTAAATATAAA
1 ATATTAAATATAAA
120130 ATA
1 ATA
120133 GAAAAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 25 0.81
15 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATTAAATATAAA
Left flanking sequence: Indices 119587 -- 120086
TTTAAGTTCTTAAATTCTTTGATGGATTTTATTACATGTATAAATAGAATAGGACGAAAAAGTAA
AGAAATAGAAATCGAAATGAAATGTAAGCAGACAGACTTTTTTATAAACAGAATAGACTTTGGAA
ACTAAATCGATAGATAATGAATAAAATACTAAAGAACAATTTTTTTTTGAACAATAGATGTCTTT
CACATCCAACTATAAGAAAAAATTTCTTCATTCTTGAAATGGCAGTTCCAAAAAAGCATACTTCT
ATATCAAAAAAGCGTATTCGAAAAAATATTTGGAAAAGAAAGGGATATTGGGCAGCCTTGAAAGC
TTTGTCGTTAGCAAAATCTCTTTCTACTAATAATTCAAAAAGTTTTTTTGTGCGACAAATAAAAA
ATCAAACGGTGGAATAATCTGACTCCCTTTGACGTAAGGAAAGTTCTAGTGTTTTTTGTTTATTG
TTTATTTTATTGGTTAGTTTATTGTTTATGATATTTTATATTTTT
Right flanking sequence: Indices 120133 -- 120632
GAAAAAAGAATTCTATTCTTGAATGTTTTGAATTAATCAATGAATTAATCAATATTAAATTGAAC
TCATTTCATTTTTATCCTATCATATGTAGAATTATCATATGTCAAATAAAAATATGTCAAATAAA
AATTTTTTTGTTTAAGAAGTTTTAAAAACAATACTTTTTTTTTTTGTTTTCAAAAAAAAAGAATA
ATAAAGCAAAGACCCGAAGCAAAGACACAAAGTTTCACTTTTTTTTTTTTCTTTTTAGTATAGTG
TAATATTTACAAGATGGGGATTTTTATTTTCCCCATCGGCCTACTTGTCACAATTCCACACAATT
CCAATAATAAATATAAATATTGATTCCAATACTTCCAATACTAAAATAAGAAATATTGATAAGTT
TTGTCTTCTTTCTATTTATACTATTTGAATAAAAAAAAGCATATCTACTAGGATCTTTAGTCAAA
AATAATGGATTAACTTTCAACCTTATTTTGTAACTTTCTTAAGAA
Found at i:120178 original size:12 final size:12
Alignment explanation
Indices: 120161--120185 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
120151 TTGAATGTTT
120161 TGAATTAATCAA
1 TGAATTAATCAA
120173 TGAATTAATCAA
1 TGAATTAATCAA
120185 T
1 T
120186 ATTAAATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
TGAATTAATCAA
Left flanking sequence: Indices 119661 -- 120160
AATCGAAATGAAATGTAAGCAGACAGACTTTTTTATAAACAGAATAGACTTTGGAAACTAAATCG
ATAGATAATGAATAAAATACTAAAGAACAATTTTTTTTTGAACAATAGATGTCTTTCACATCCAA
CTATAAGAAAAAATTTCTTCATTCTTGAAATGGCAGTTCCAAAAAAGCATACTTCTATATCAAAA
AAGCGTATTCGAAAAAATATTTGGAAAAGAAAGGGATATTGGGCAGCCTTGAAAGCTTTGTCGTT
AGCAAAATCTCTTTCTACTAATAATTCAAAAAGTTTTTTTGTGCGACAAATAAAAAATCAAACGG
TGGAATAATCTGACTCCCTTTGACGTAAGGAAAGTTCTAGTGTTTTTTGTTTATTGTTTATTTTA
TTGGTTAGTTTATTGTTTATGATATTTTATATTTTTATATTATAATATAAAATATTAAATATAAA
ATATTAAATATAAAATAGAAAAAAGAATTCTATTCTTGAATGTTT
Right flanking sequence: Indices 120186 -- 120685
ATTAAATTGAACTCATTTCATTTTTATCCTATCATATGTAGAATTATCATATGTCAAATAAAAAT
ATGTCAAATAAAAATTTTTTTGTTTAAGAAGTTTTAAAAACAATACTTTTTTTTTTTGTTTTCAA
AAAAAAAGAATAATAAAGCAAAGACCCGAAGCAAAGACACAAAGTTTCACTTTTTTTTTTTTCTT
TTTAGTATAGTGTAATATTTACAAGATGGGGATTTTTATTTTCCCCATCGGCCTACTTGTCACAA
TTCCACACAATTCCAATAATAAATATAAATATTGATTCCAATACTTCCAATACTAAAATAAGAAA
TATTGATAAGTTTTGTCTTCTTTCTATTTATACTATTTGAATAAAAAAAAGCATATCTACTAGGA
TCTTTAGTCAAAAATAATGGATTAACTTTCAACCTTATTTTGTAACTTTCTTAAGAATTATTATT
CTAACTCAATTCTAACTCACTATCTCACTATAATAGAACTATATA
Found at i:120252 original size:15 final size:15
Alignment explanation
Indices: 120234--120265 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
120224 TAGAATTATC
120234 ATATGTCAAATAAAA
1 ATATGTCAAATAAAA
120249 ATATGTCAAATAAAA
1 ATATGTCAAATAAAA
120264 AT
1 AT
120266 TTTTTTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (15 bp):
ATATGTCAAATAAAA
Left flanking sequence: Indices 119734 -- 120233
TGAATAAAATACTAAAGAACAATTTTTTTTTGAACAATAGATGTCTTTCACATCCAACTATAAGA
AAAAATTTCTTCATTCTTGAAATGGCAGTTCCAAAAAAGCATACTTCTATATCAAAAAAGCGTAT
TCGAAAAAATATTTGGAAAAGAAAGGGATATTGGGCAGCCTTGAAAGCTTTGTCGTTAGCAAAAT
CTCTTTCTACTAATAATTCAAAAAGTTTTTTTGTGCGACAAATAAAAAATCAAACGGTGGAATAA
TCTGACTCCCTTTGACGTAAGGAAAGTTCTAGTGTTTTTTGTTTATTGTTTATTTTATTGGTTAG
TTTATTGTTTATGATATTTTATATTTTTATATTATAATATAAAATATTAAATATAAAATATTAAA
TATAAAATAGAAAAAAGAATTCTATTCTTGAATGTTTTGAATTAATCAATGAATTAATCAATATT
AAATTGAACTCATTTCATTTTTATCCTATCATATGTAGAATTATC
Right flanking sequence: Indices 120266 -- 120765
TTTTTTGTTTAAGAAGTTTTAAAAACAATACTTTTTTTTTTTGTTTTCAAAAAAAAAGAATAATA
AAGCAAAGACCCGAAGCAAAGACACAAAGTTTCACTTTTTTTTTTTTCTTTTTAGTATAGTGTAA
TATTTACAAGATGGGGATTTTTATTTTCCCCATCGGCCTACTTGTCACAATTCCACACAATTCCA
ATAATAAATATAAATATTGATTCCAATACTTCCAATACTAAAATAAGAAATATTGATAAGTTTTG
TCTTCTTTCTATTTATACTATTTGAATAAAAAAAAGCATATCTACTAGGATCTTTAGTCAAAAAT
AATGGATTAACTTTCAACCTTATTTTGTAACTTTCTTAAGAATTATTATTCTAACTCAATTCTAA
CTCACTATCTCACTATAATAGAACTATATAGAATAAATCTTCCATTACTTTTATTTTAATCCAAT
TTAATTAATAAAAGTACCTTGCATATTTATCTAGAGAAAAATGGA
Found at i:130778 original size:21 final size:21
Alignment explanation
Indices: 130754--130808 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
130744 TTATTGATCA
130754 GTAATAATAATAATAAATAAT
1 GTAATAATAATAATAAATAAT
** *
130775 GTAATTGTTATAATAAATAAT
1 GTAATAATAATAATAAATAAT
*
130796 -AAATAATGAATAA
1 GTAATAAT-AATAA
130809 AGTCAGTTCA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (21 bp):
GTAATAATAATAATAAATAAT
Left flanking sequence: Indices 130254 -- 130753
CGAAGAACGCCATGCATTGAAGGGTGGTGGGGGCCCATATTGACTATCATAAGGTCTTTTCTTAT
AACTGGTACATTCATAGGGGTTTCCTCGATTCATTCTTCCATGAATTACTGAAAACGAAAAGAAA
TTAATCAAAATTCACGATCTAATAAATCAAATAATAAAAAAAAAAAAAAAGACTCTTCAAATTAA
CGAATTGTTGACTCCCGAATATCCAGCTGGGTAATTACTTCTTTATAACGTACTCTATTTTTCTT
TGCCAAATAAGACAGCAGCCGTTGGCGTTTTCCTAGTATTTTCCGTAAACCTCTTTGAGATAAAT
AATCTTTTCTATGAAATTCCAAATGTGAAGTAAGCCTTCGTATCTTATTAGTAAAATTGACTATT
TGAAATTCGACGGATCCCCTGTTTTCTTCTTGTGAAATAACTGAGATGAATGAATTTTTTATCAT
AAAAAGAAATCCCTCCTGTTTTTTTGATAAAATTTTTATTGATCA
Right flanking sequence: Indices 130809 -- 131308
AGTCAGTTCATTTTAATTTCGTATACAGACTAATCTGTACTTCGTTAGGAATTCCTAACGAAGTC
AAATAAAATTTATCATTTTTTTTATTCGGCTAGAGATACAAAAGAATCGTATATTTCTTGGTTTA
CAAAAGAGAAAAATGTATATCTAAAAAAAAAAGAAAGGTAAAAAATCTCATTGATTGATTTCTAG
ATCTAATTAATGTATGATTGAATTACATGTATCAAAATAAGATATGAATGTAAAACAATGTATGT
ACTCATCTCTTTTTTTTTTTTTTATACTAGATTTATATACTAGACCAGGCATGCTATGGAATATA
TGAAAAATACGCCCTTACCAAATTTTCACCGAATTTTCAATTTTGGATATATATGTATCCTTAAC
ATACTGAACCGACTCGCGTTATTGGTATTAAACCAATATCGATTCATACAAGCTAAATCTTCTAA
TCGATAAGTGGGCCAAAGAAAAAGCTTTAATTTAAGTAGTTTATT
Found at i:132156 original size:18 final size:18
Alignment explanation
Indices: 132135--132169 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
132125 CTTTCTATTG
* *
132135 ATTTTTTTATTTTCATTT
1 ATTTTTTCATTGTCATTT
132153 ATTTTTTCATTGTCATT
1 ATTTTTTCATTGTCATT
132170 AAAATTTACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTTTCATTGTCATTT
Left flanking sequence: Indices 131635 -- 132134
GATATATAATAAAGTGTCCGTTATTTTTTACCGATAGACACATTGGTTCAATAATCAATATTCCT
CTTTTCATCAATTCTGTAAGAGTGAAATTTTTTTGAATCATCAGAATATCCAGACTCATTTCGCC
TCTTTGAACAGAGGATATAATAATTTCTCGTGGATTCGTTAGTCTAAGTAGGAGACAAAATACTT
TGATATTATTAATTATTTTTTGATTTAAACAAGCATCCCATCTTAATTGAAAACCTAAATGTTTT
TTTAGGAAAGAATAAAGTTCTATTTCCGTATTACTTTTGTATTGTTTTTGCTTTCTACGTTTTTT
TGTGTTTGATCCCACATAATCTTCTTCAATATCTTTTTCTTGGTTTGACAGAACTGATCCACGAT
CCATTGGGTCCTCGGATTCTTTTTCTTCGTGGTTTCGATTCTCTAATTCAATAGATTTTTTTTTA
TTCGACAATATAGATATAAAAAAATCACCATTTTTCTTTCTATTG
Right flanking sequence: Indices 132170 -- 132669
AAAATTTACAAGAAGTAATTTGATTGGTATTACCCACGGTTTTATCTCATATGTGTTGCAAAATA
TCCCCCATTTTGGAAAAAACCAAAGTTCCAAATTGGATATGGGCTGATTTAGGATTTCTTCATTC
ATTTCCATCCAATCAAAAAGGTTTTTTTTTTTATTGGCTGAATCGACTTCGTGATCTTGTTGAAT
CGTAAGAGAAAAAATATCTTTGTTATCAATTTTATCAATTATTTGATACTTATGAGTTCCAGTCT
TAATATTTTTTTTTTCTTTGGTTCCGGTATCGACCCAGGACTCAATATTCACTTTCTTTCTAATA
CAAAACTTGATAATTTTCCAAGCAAAATATTTTCTATCTGAGGGTTTCTCCATATCGATACTATC
CTCTTCTGTTAGATAATTATTAATAGGTATATCTCCGAACATATCAAAAAAATTGCTATTAGTTG
TGTTAGAATTATAAGAAATCTCATGTTTATTATTTATTTGTAATG
Found at i:134482 original size:15 final size:15
Alignment explanation
Indices: 134441--134476 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
134431 TCCGGGTTTT
*
134441 TTCTTTTCTTTTGTC
1 TTCTTCTCTTTTGTC
134456 TTCTTCTCTTTTGTC
1 TTCTTCTCTTTTGTC
134471 TTCTTC
1 TTCTTC
134477 GTTTTTCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.25, G:0.06, T:0.69
Consensus pattern (15 bp):
TTCTTCTCTTTTGTC
Left flanking sequence: Indices 133941 -- 134440
TTTTGAAATTTTATAAAATTTTTTCCAAGTTTTTTAAAGATGGGTTCAAGAACTGAAAGTTTTTT
TCGGGGAACCCCAAAAGGCAGTTCAGTTTCCATTCCCCAAACTGTTAAAAAACAAAAATTCTTTT
TTTGCCCTTTCTTTTTCATTCGATCTTTATGAGGGAAGTTTAACTTAGGTCTGTGCCAAGGTTTT
AAACGAAAAGGAAAGAGAATCTTTATTTGAATACCATCTGTTAACCAGTTTTTTGGAAATTCTGT
TTCGGATAATTGAATTCCATTATAAGTACATTTAACATGCATTTCTCGATTCCAATCCGTTAAAT
CCTCAGCCCATTCGGGAAATTGAAATAATAGCATACGAATGATGTTTTTAACTATTATTACTGAA
GGCAATAGAATATATTTTCTAATAATTGATTGGGTTAGTAAAACACAACCTCTTATTACTTGAGC
AAATAGAATACTATCCCAGGCTTCTGCTATATCCATCCGGGTTTT
Right flanking sequence: Indices 134477 -- 134976
GTTTTTCTCACTTTCTTTTGGTTTTTCTTCTATATCAGTAGAATCCGAAATCATGAATCCAGATT
TTTTACATATCCAGTTTATAAACAGTATTTTCATCAACTCGGAAATATCCAAATCAAAAAAACGG
GATTTGTCTATTCTGTCCAAAAAAAGGAGAGAATGGACATTTGCTTGAAATAGTTCCCAAATCGC
GGTTTTGCGTCTTTGCGCTCGCATGGAGCCTTTTATTATGTCTCGGCGAAAGTCGGACTGTTGTG
AATAACGTATCAAAGTTACTTCGTCTGTTTGATCAGAATTAGTTACATCTTTGATATTATTATAA
GTATCAATATTTTTTTCATTATGAGTAAAAATTACTACACGTTTGCTTTTTCGTGAACGAATCTC
AGGATTTGCTGCTATGTTTGTTTCATTTTCTCTCTCTTGCTGTTCCAAATCGTCAATTAATTTGT
ATGACCATCGAGGAATTTTTTTACTTATTTCTTTTATTCCAATAG
Found at i:146299 original size:16 final size:16
Alignment explanation
Indices: 146278--146311 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
146268 TAACCCCACC
*
146278 ATTAACTATTTCATTT
1 ATTAACTACTTCATTT
146294 ATTAACTACTTCATTT
1 ATTAACTACTTCATTT
146310 AT
1 AT
146312 GAATTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTAACTACTTCATTT
Left flanking sequence: Indices 145778 -- 146277
CTCAACGCCACTATTCTTGAACAACTTGGAGTCGGACCCTCTTTTCGCACTATTACGGATACGAA
AATAAAATAATGGGAAAAATTGGATTCAATTGTCAACTGCTCCTATCGGAAATAGGATTGACTAC
GGATTCGAGCCATAGCACATGGTTTCATAAAAGCGTATGATTTTCCCGATCTAAATAAAGCAGGT
TTTACATGAAGAAGATTTGGCTCAACATGTTCTATTTGATACGGGTAGGAGAAGACCCCGGCTCG
GTATTCTTAAATAAATAGAGAAATCAGAACCAAGTCAAGATGATACGGATCAACCCTTTCTTCTT
GCGCCAAAGATCTTACCATTTCCGAAGGAACTGGAGTTACATCTCTTTTCCATTTCCATTCAAGA
GTTCTTATGCGTTTCCACGCCCCTTTGAGACCCCGAAAAATGGACAAATTCCTTTTCTTAGGAAC
ACATACAAGATTCGTCACTACAAAAAGGATAATGGTAACCCCACC
Right flanking sequence: Indices 146312 -- 146811
GAATTTCATAGTAATAGAAATAAAATACATGTCTATCCTACCGAGACAGAATTTGTAACTTGCTA
TCCTCTTGCCTAGCAGGCAAAGATTGACCTCCGTGGAAAGGATGATTCATTCGGATCGACATGGG
AGTCCAACTACATTGCATTGCCAGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTT
CTCTCATGGTACAATCCTCTTCTCGCTGAGCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAG
GACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCGGGATCACTAACTAATACTA
ATCTAATACTAATAGAATAGAAAATACTAAACTAATAGAATAGAAAAGAACTGTCTTTTCTGTAT
ACTTTCCCCGGTTCCGTTGCTACCGCGTGCTTTACGCAATCGATCGGATCATATAGATATCCCTT
CAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAG
Found at i:146670 original size:23 final size:24
Alignment explanation
Indices: 146639--146683 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
146629 TAATACTAAT
146639 CTAATACTAATAGAATAGAAAATA
1 CTAATACTAATAGAATAGAAAATA
146663 CTAA-ACTAATAGAATAGAAAA
1 CTAATACTAATAGAATAGAAAA
146684 GAACTGTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.22
Consensus pattern (24 bp):
CTAATACTAATAGAATAGAAAATA
Left flanking sequence: Indices 146139 -- 146638
TTACATCTCTTTTCCATTTCCATTCAAGAGTTCTTATGCGTTTCCACGCCCCTTTGAGACCCCGA
AAAATGGACAAATTCCTTTTCTTAGGAACACATACAAGATTCGTCACTACAAAAAGGATAATGGT
AACCCCACCATTAACTATTTCATTTATTAACTACTTCATTTATGAATTTCATAGTAATAGAAATA
AAATACATGTCTATCCTACCGAGACAGAATTTGTAACTTGCTATCCTCTTGCCTAGCAGGCAAAG
ATTGACCTCCGTGGAAAGGATGATTCATTCGGATCGACATGGGAGTCCAACTACATTGCATTGCC
AGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCATGGTACAATCCTCTTC
TCGCTGAGCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAACAGTTCATCA
CGGAAGAAAGGACTCACTGAGCCGGGATCACTAACTAATACTAAT
Right flanking sequence: Indices 146684 -- 147183
GAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGTGCTTTACGCAATCGATCGG
ATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCA
CGAAAGCCAGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCT
CACACTAACCCGTCAATTTGGGATCCAATTCGGGGTTTTCCTTGGGAGGTGTCGAGAAGGAATTG
GAATGGAATAATATCGATTCATACAGATATAGAAGAAAAGGTTCTCTATTGATTCAAACGCTGTA
CCTATGGGATAGGGATAGCGAAAGAGGAAAAAACCGAAGATTTCACATAGTACTTTTGATCGAAA
AATCAATCTGATTTATTTTGTACCCTTCGCTTAATGAGAAAATGGGTTAGATTCTACAGGATCAA
ACCTATGGGACTTAAGGAATGACGGAAGGGAATAAAAAAAGAAAA
Found at i:147211 original size:14 final size:14
Alignment explanation
Indices: 147192--147231 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
147182 AAGAGAGGGA
147192 AAAATAATATAATT
1 AAAATAATATAATT
*
147206 AAAATAATAGAATT
1 AAAATAATATAATT
*
147220 CAAATAA-ATAAT
1 AAAATAATATAAT
147232 ATAATTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (14 bp):
AAAATAATATAATT
Left flanking sequence: Indices 146692 -- 147191
TTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGTGCTTTACGCAATCGATCGGATCATATA
GATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCC
AGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAA
CCCGTCAATTTGGGATCCAATTCGGGGTTTTCCTTGGGAGGTGTCGAGAAGGAATTGGAATGGAA
TAATATCGATTCATACAGATATAGAAGAAAAGGTTCTCTATTGATTCAAACGCTGTACCTATGGG
ATAGGGATAGCGAAAGAGGAAAAAACCGAAGATTTCACATAGTACTTTTGATCGAAAAATCAATC
TGATTTATTTTGTACCCTTCGCTTAATGAGAAAATGGGTTAGATTCTACAGGATCAAACCTATGG
GACTTAAGGAATGACGGAAGGGAATAAAAAAAGAAAAGAGAGGGA
Right flanking sequence: Indices 147232 -- 147731
ATAATTATAAGAATAATAAAAAAAAAAAAAAATAAATAAAAATGAAGTAGAAGAGCCCAGATTCC
AAATGAACAAATTCAAACTTGAAAAAAAAAATATTTCTGATTCTCGAAGAATGAGGGGCAAAGGG
ATTGATCGAGAAAGATTTCTTGTTCTTATTATAAGATCGTGATTGGATCCGCAGATGTTTGGTAA
AAAGAAGAATCTTCTCCTTTGAGAATAATCAAAAAAGGAAAGTGTTCAATTGGAACATGAAAACG
TGACTGAATTTGTCCTAGTTACTCTTCGGGACGGAGTGGAGGAAGGGAGGAGCTTCTCGAACGAG
GAAAAGGATCCAATGACTTTGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTAT
GGTTCTGTAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAAC
CAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCTG
Found at i:151734 original size:13 final size:13
Alignment explanation
Indices: 151718--151743 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
151708 CATTCTCATT
151718 ATAAGAATAAGAA
1 ATAAGAATAAGAA
151731 ATAAGAATAAGAA
1 ATAAGAATAAGAA
151744 GGGGTCATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
ATAAGAATAAGAA
Left flanking sequence: Indices 151218 -- 151717
CTAGCAGGTTTTTTCGGAAAACTCCATTTATTCTGGTGTGGATGGCAGGCAGGCCTATATTTTTT
GGTTTCAATAGGACTCCTTACGAGCGTTGTTTCTCTCTACTATTATCTAAAAATAATCAAGTTAT
TAATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCCCCTTTAAGA
TCAAACAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATC
AATGAACCCGATTATTGAAATTGCTCAAGATACCCTTTTTTAGCTTCTAGAATCTATTTCTTAGT
TCAAGATCCCTCTTACTAACTGGAATCAAAGAATTAGTAGATCTGTTCCGCCCAAAAGGGGAATG
GGCTAGGGTTATGAACTTATAATCTATAATCTGATAATCGAGTCGATTCCATGATTATAAGTTCA
TTCCATACCGGACCAGACCGGAATAGGCTTATATACATTCTCATT
Right flanking sequence: Indices 151744 -- 152243
GGGGTCATTCGAGCGTATCTAAATAGATACTATGTTTACATATGGATCCCTCCGTCGTTACATTC
CATTTAGGATTAGGAATAGGCGTAATCGGACCTGCTTTTTACATATATATCTCTCCTTATTTGGG
ACCCTATTCTATTCACCTCTTTGGGCTTCTATTGAATCGAGAAATGGGTTTGATTGTCCATTTTT
TGATATTTTGATATAATTTTGATATTTTGATATAATTTTGATATAAATATAAATAGAATATATAT
TATATAATATATATATATAAGATAAGATATATAAGATAAGGCATCTTCCGGATAATTCAAATCGA
AGCAATTGGATGTCCGACTCGGGCCTATATGACATGACCGATCAATAGAAATACTCCAAGACTCC
GCCTTTGTCATATATTCCATACATCACACTAGATAGATATCATATTCATGGAATACGATTTACTT
TCAAGATGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAA
Found at i:151959 original size:11 final size:11
Alignment explanation
Indices: 151943--151984 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
151933 ATTTTTTGAT
151943 ATTTTGATATA
1 ATTTTGATATA
151954 ATTTTG--AT-
1 ATTTTGATATA
151962 ATTTTGATATA
1 ATTTTGATATA
151973 ATTTTGATATA
1 ATTTTGATATA
151984 A
1 A
151985 ATATAAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 6 0.21
9 2 0.07
10 2 0.07
11 18 0.64
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.55
Consensus pattern (11 bp):
ATTTTGATATA
Left flanking sequence: Indices 151443 -- 151942
GTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGAAATTGCTCAAGA
TACCCTTTTTTAGCTTCTAGAATCTATTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATCAAA
GAATTAGTAGATCTGTTCCGCCCAAAAGGGGAATGGGCTAGGGTTATGAACTTATAATCTATAAT
CTGATAATCGAGTCGATTCCATGATTATAAGTTCATTCCATACCGGACCAGACCGGAATAGGCTT
ATATACATTCTCATTATAAGAATAAGAAATAAGAATAAGAAGGGGTCATTCGAGCGTATCTAAAT
AGATACTATGTTTACATATGGATCCCTCCGTCGTTACATTCCATTTAGGATTAGGAATAGGCGTA
ATCGGACCTGCTTTTTACATATATATCTCTCCTTATTTGGGACCCTATTCTATTCACCTCTTTGG
GCTTCTATTGAATCGAGAAATGGGTTTGATTGTCCATTTTTTGAT
Right flanking sequence: Indices 151985 -- 152484
ATATAAATAGAATATATATTATATAATATATATATATAAGATAAGATATATAAGATAAGGCATCT
TCCGGATAATTCAAATCGAAGCAATTGGATGTCCGACTCGGGCCTATATGACATGACCGATCAAT
AGAAATACTCCAAGACTCCGCCTTTGTCATATATTCCATACATCACACTAGATAGATATCATATT
CATGGAATACGATTTACTTTCAAGATGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAAT
CTCGTGCTAAAGAGCGTGGAGGTTCGAATCCTCTTCAAGGCATAATATTGAGAATGCTCATTGAA
TGAGCAATTCAATAAGTTCGGCAGCGGATCAAGAAATCTTGGTGATCTTCTCTATCTAATGAATG
GGGAGTCCGTTTTGAAATTTGAAATCGTCCGCCCTGCAACCACCCCCGAGTATATGCTTCAACAG
GAATTACACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAA
Found at i:151960 original size:19 final size:19
Alignment explanation
Indices: 151936--151982 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
151926 ATTGTCCATT
151936 TTTTGATATTTTGATATAA
1 TTTTGATATTTTGATATAA
151955 TTTTGATATTTTGATATAA
1 TTTTGATATTTTGATATAA
151974 TTTTGATAT
1 TTTTGATAT
151983 AAATATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (19 bp):
TTTTGATATTTTGATATAA
Left flanking sequence: Indices 151436 -- 151935
TATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGAAATTG
CTCAAGATACCCTTTTTTAGCTTCTAGAATCTATTTCTTAGTTCAAGATCCCTCTTACTAACTGG
AATCAAAGAATTAGTAGATCTGTTCCGCCCAAAAGGGGAATGGGCTAGGGTTATGAACTTATAAT
CTATAATCTGATAATCGAGTCGATTCCATGATTATAAGTTCATTCCATACCGGACCAGACCGGAA
TAGGCTTATATACATTCTCATTATAAGAATAAGAAATAAGAATAAGAAGGGGTCATTCGAGCGTA
TCTAAATAGATACTATGTTTACATATGGATCCCTCCGTCGTTACATTCCATTTAGGATTAGGAAT
AGGCGTAATCGGACCTGCTTTTTACATATATATCTCTCCTTATTTGGGACCCTATTCTATTCACC
TCTTTGGGCTTCTATTGAATCGAGAAATGGGTTTGATTGTCCATT
Right flanking sequence: Indices 151983 -- 152482
AAATATAAATAGAATATATATTATATAATATATATATATAAGATAAGATATATAAGATAAGGCAT
CTTCCGGATAATTCAAATCGAAGCAATTGGATGTCCGACTCGGGCCTATATGACATGACCGATCA
ATAGAAATACTCCAAGACTCCGCCTTTGTCATATATTCCATACATCACACTAGATAGATATCATA
TTCATGGAATACGATTTACTTTCAAGATGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAA
ATCTCGTGCTAAAGAGCGTGGAGGTTCGAATCCTCTTCAAGGCATAATATTGAGAATGCTCATTG
AATGAGCAATTCAATAAGTTCGGCAGCGGATCAAGAAATCTTGGTGATCTTCTCTATCTAATGAA
TGGGGAGTCCGTTTTGAAATTTGAAATCGTCCGCCCTGCAACCACCCCCGAGTATATGCTTCAAC
AGGAATTACACAAGGGTAGATTGATACAATAGAAACCTCTGGTAA
Found at i:152017 original size:18 final size:18
Alignment explanation
Indices: 151978--152036 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
151968 ATATAATTTT
*
151978 GATATAAATATAA-AT-A
1 GATATATATATAAGATAA
* *
151994 GA-ATATATATTATATAA
1 GATATATATATAAGATAA
*
152011 TATATATATATAAGATAA
1 GATATATATATAAGATAA
152029 GATATATA
1 GATATATA
152037 AGATAAGGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 8 0.24
16 4 0.12
17 2 0.06
18 20 0.59
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (18 bp):
GATATATATATAAGATAA
Left flanking sequence: Indices 151478 -- 151977
AATGAACCCGATTATTGAAATTGCTCAAGATACCCTTTTTTAGCTTCTAGAATCTATTTCTTAGT
TCAAGATCCCTCTTACTAACTGGAATCAAAGAATTAGTAGATCTGTTCCGCCCAAAAGGGGAATG
GGCTAGGGTTATGAACTTATAATCTATAATCTGATAATCGAGTCGATTCCATGATTATAAGTTCA
TTCCATACCGGACCAGACCGGAATAGGCTTATATACATTCTCATTATAAGAATAAGAAATAAGAA
TAAGAAGGGGTCATTCGAGCGTATCTAAATAGATACTATGTTTACATATGGATCCCTCCGTCGTT
ACATTCCATTTAGGATTAGGAATAGGCGTAATCGGACCTGCTTTTTACATATATATCTCTCCTTA
TTTGGGACCCTATTCTATTCACCTCTTTGGGCTTCTATTGAATCGAGAAATGGGTTTGATTGTCC
ATTTTTTGATATTTTGATATAATTTTGATATTTTGATATAATTTT
Right flanking sequence: Indices 152037 -- 152536
AGATAAGGCATCTTCCGGATAATTCAAATCGAAGCAATTGGATGTCCGACTCGGGCCTATATGAC
ATGACCGATCAATAGAAATACTCCAAGACTCCGCCTTTGTCATATATTCCATACATCACACTAGA
TAGATATCATATTCATGGAATACGATTTACTTTCAAGATGCCTTGGTGGTGAAATGGTAGACACG
CGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAGGTTCGAATCCTCTTCAAGGCATAATATTGAG
AATGCTCATTGAATGAGCAATTCAATAAGTTCGGCAGCGGATCAAGAAATCTTGGTGATCTTCTC
TATCTAATGAATGGGGAGTCCGTTTTGAAATTTGAAATCGTCCGCCCTGCAACCACCCCCGAGTA
TATGCTTCAACAGGAATTACACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCGC
CCGTAACCCAACAGGTAAAGTACATTACATAGTCCGTTTTAGGGA
Found at i:152033 original size:14 final size:14
Alignment explanation
Indices: 152016--152043 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
152006 TATAATATAT
152016 ATATATAAGATAAG
1 ATATATAAGATAAG
152030 ATATATAAGATAAG
1 ATATATAAGATAAG
152044 GCATCTTCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (14 bp):
ATATATAAGATAAG
Left flanking sequence: Indices 151516 -- 152015
TTTAGCTTCTAGAATCTATTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATCAAAGAATTAGT
AGATCTGTTCCGCCCAAAAGGGGAATGGGCTAGGGTTATGAACTTATAATCTATAATCTGATAAT
CGAGTCGATTCCATGATTATAAGTTCATTCCATACCGGACCAGACCGGAATAGGCTTATATACAT
TCTCATTATAAGAATAAGAAATAAGAATAAGAAGGGGTCATTCGAGCGTATCTAAATAGATACTA
TGTTTACATATGGATCCCTCCGTCGTTACATTCCATTTAGGATTAGGAATAGGCGTAATCGGACC
TGCTTTTTACATATATATCTCTCCTTATTTGGGACCCTATTCTATTCACCTCTTTGGGCTTCTAT
TGAATCGAGAAATGGGTTTGATTGTCCATTTTTTGATATTTTGATATAATTTTGATATTTTGATA
TAATTTTGATATAAATATAAATAGAATATATATTATATAATATAT
Right flanking sequence: Indices 152044 -- 152543
GCATCTTCCGGATAATTCAAATCGAAGCAATTGGATGTCCGACTCGGGCCTATATGACATGACCG
ATCAATAGAAATACTCCAAGACTCCGCCTTTGTCATATATTCCATACATCACACTAGATAGATAT
CATATTCATGGAATACGATTTACTTTCAAGATGCCTTGGTGGTGAAATGGTAGACACGCGAGACT
CAAAATCTCGTGCTAAAGAGCGTGGAGGTTCGAATCCTCTTCAAGGCATAATATTGAGAATGCTC
ATTGAATGAGCAATTCAATAAGTTCGGCAGCGGATCAAGAAATCTTGGTGATCTTCTCTATCTAA
TGAATGGGGAGTCCGTTTTGAAATTTGAAATCGTCCGCCCTGCAACCACCCCCGAGTATATGCTT
CAACAGGAATTACACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCGCCCGTAAC
CCAACAGGTAAAGTACATTACATAGTCCGTTTTAGGGATTGGCGA
Found at i:152824 original size:12 final size:12
Alignment explanation
Indices: 152807--152831 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
152797 TATCTATTTT
152807 ATTTAGTTATTC
1 ATTTAGTTATTC
152819 ATTTAGTTATTC
1 ATTTAGTTATTC
152831 A
1 A
152832 GTTAAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (12 bp):
ATTTAGTTATTC
Left flanking sequence: Indices 152307 -- 152806
GAATGAGCAATTCAATAAGTTCGGCAGCGGATCAAGAAATCTTGGTGATCTTCTCTATCTAATGA
ATGGGGAGTCCGTTTTGAAATTTGAAATCGTCCGCCCTGCAACCACCCCCGAGTATATGCTTCAA
CAGGAATTACACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCGCCCGTAACCCA
ACAGGTAAAGTACATTACATAGTCCGTTTTAGGGATTGGCGACTTACCCATTCAGTGACTTTGGC
ACTGGATGTCCCCCCCCCCCCAAAAAAAAAATGGGGACTCTCGGGTCGGGTGAATTCAATATCAA
TAATAGACGTCTGTTGGCATTCCAGCCTTCCTTCTCCCCCGTGGATATCTTTGCTTCGGAACAAA
ACAATTAGGCCCGCGGTCAACTGGAATGTGTATTATCCATATAGGGGATCTTCCAATTGAGATTG
AGAAGATCCATCGACCGGAGACGAAGAGAAGGGTCTATCTATTTT
Right flanking sequence: Indices 152832 -- 153331
GTTAAACCAATGATTCGTTATTGGAGCAGATAGCAACAACCACCATTTCATCCGACATACGTATT
TTTGATTTTCCAATGGATTTACATCTTTCATTAATGGAAATTTTTTGATGTAGTGAGTAATAGCT
CTGGTTGCTCGCTGTTCAAGAATTCTTGTTTAGGCAGTTCATACCATCCATACATAGTGTTTTGA
TCTAAGATTTCAATTCTTCCATGTTTCCGCAGTAACATATTGTTCCATGTCCAAAATCCAAAATA
TGGAAGAAACCGGTGTTTCCACGACTCTACCACCCAGTCAATTCTGTTCCACTTAATCCCTATTT
CATGGCCACATATCTTTCAGGCTAAGGAATGGGAAACCTTTCTCCTATTACATGAATCCAATTTT
CATTTCATCCGGGAAAAGCCATCTTTTTCTCAACAATGCCCTTGTCATTTGATCCAATAGCGTTC
CGTTAGATAGGAACAGATTTGATAAATACTGATAACTCTCGGATA
Found at i:154999 original size:18 final size:18
Alignment explanation
Indices: 154978--155034 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
154968 GTCACGGTCG
154978 ATATCGTCACTCA-CATCA
1 ATATCGTCACT-AGCATCA
154996 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
*
155014 ATATCGTCACTATCATCA
1 ATATCGTCACTAGCATCA
155032 ATA
1 ATA
155035 AGAAAACCCT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
17 1 0.03
18 36 0.97
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (18 bp):
ATATCGTCACTAGCATCA
Left flanking sequence: Indices 154478 -- 154977
TACTAATCGATAGGGCCTCATTGGTAAGTGCTACAAGATCTCGTACATTGGAACCCATGGTTATG
GACCCGAATCCATTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATATGAAAGAGT
GAAAAAGTACTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTAATTTAT
TCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCCATAACAAGAATATTT
CTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCACTAATAGACCGAGGGATAAGTAATT
CGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTGCTTTTG
CTAATTCGAATTGAAGGGTGATATAAAATCGGTCTATTTCCGGCATCATATCCATAGTTAGCGCA
TTCATCCTAGTTAGAAGCTCCAGCTCCGTATCAAGGTCACGGTCG
Right flanking sequence: Indices 155035 -- 155534
AGAAAACCCTTAGGCTTATTATCCAGGAACTTGTTCAGAAATACTGTAATGAAAGGAACATAGGA
GTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAATAC
CCCTAGAGGGGGATAGGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGAAAACTA
TTCGCCCCACACGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCGTCTTTC
TGCTAAACAGAGTGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTAAGTATC
GTAAGTAAATTGCTCCCGGCTCTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGATCA
CTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAACTGAAC
CAAGAATTCTCTTTCTTTATCATCAATCGAATCACTGTTCGCGAC
Found at i:157413 original size:21 final size:21
Alignment explanation
Indices: 157387--157476 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
157377 ACTCACAAAG
* * *
157387 AAAAAAGGAAGTGAGTTAGAC
1 AAAAAAAGAAGTAACTTAGAC
* *
157408 AAAAAAAGAAGAAACTTGGAC
1 AAAAAAAGAAGTAACTTAGAC
*
157429 AAAAAAAGAAGTAACTTGGAC
1 AAAAAAAGAAGTAACTTAGAC
*
157450 AAAAAGAAAGGAAGTGACTTAGAC
1 -AAAA-AAA-GAAGTAACTTAGAC
157474 AAA
1 AAA
157477 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
21 36 0.62
22 4 0.07
23 6 0.10
24 12 0.21
ACGTcount: A:0.58, C:0.08, G:0.22, T:0.12
Consensus pattern (21 bp):
AAAAAAAGAAGTAACTTAGAC
Left flanking sequence: Indices 156887 -- 157386
ATTGTCCATACGTAAAATCATAATTCTTGATACGGGCCTTTTCCACATAAAAAGGGAATCTTTTG
TTACAATAGAAACAGAAGTGATGTAGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGA
AGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTTGATCGTGGGATA
TCATTGAGAAATAGGAATCCGTGTTATCAAAAGATTTATTATTTCTAGTATGGAATGAGTCAATC
ATCCACTTTAGTATCTTATTATTGAACAAAAATAGTGATATTGTTCCTCCATTGATCAAAAATTT
CGATTTTTGGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACGATTT
GAAGACCTATTGGTTCTAACAGCTGATTGCAGAGTTGATCATTCGAACCTTTCAATTCATAGATA
TGAATCTCGGACCTATGAATGGGGATATTCCCGAAACTCACAAAG
Right flanking sequence: Indices 157477 -- 157976
TCTTTTTTGTCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGATCGAACAC
TACTTGAAAAAGAAAACGGCTCTTCTGCTCAGAAATGAAATGTTCCAAATGTTCCTGGAACTTCT
TGCTCCCATTAGACCATTTGTATCTATATGCATTAGGATCCCAATTCATGGATCTCTCGGTTCGA
GAAAGAAAAAAAAGAAGATCGAACCATTTCTTCTGACTCTGTGTCAAATTCGATAAATGTTGGTT
GATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTC
CATATTCGAAGTTGCGATCGGATCGATTCATTAAAAAGAATTGATTCAATACATTTCTTATGTAC
CCATAGGTGCTATATTGGATTTGAATCAGATTTCGGATCAATCCATATTGATTGACTGCCTCCAT
TATGTTGTTGCTAGCAAATACCACTCTTTTTTGTTTTGGATCTTC
Found at i:159830 original size:12 final size:12
Alignment explanation
Indices: 159813--159843 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
159803 TAAGGACCAC
159813 TACTACAAATAG
1 TACTACAAATAG
159825 TACTACAAATAG
1 TACTACAAATAG
159837 TACTACA
1 TACTACA
159844 CCCTTGATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.26
Consensus pattern (12 bp):
TACTACAAATAG
Left flanking sequence: Indices 159313 -- 159812
TGTCCCGAATTCAAGTTGATTATGTTTCGACCCTTCCTCGGAGAAAGACGATCAAACAATTCCCA
ATCAGGGTCCTTGCGGATTGGATCATCCATATAATATACAAAAAGAAACTCCAGATATTTGATAT
CTTTCTCTTTGAATGAGATCTCAATTCCAGCGACAGTTTCATTAGATATCTTACAACTAGAATCC
CTCTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGACATGATACACTT
TTTAGTTATTGGGAGAACCCGAGTACTCTCTTTCGGATCCAGGAAACAGCTCTCAGAGATCTTTT
TTCCTTTTGGAAGATACAGGAGCGAAACAATCAACCTATTGGAAGACCCAAAGGATTCTTCCAAT
GTATCATTTCTGGGTCCAATGGAATTCATAGGTATAGGAAGAAGCCCCGTCAAATAGAGATTTTT
TCTTTCGACCATCTTTCGATTGTTAATACGATATATAAGGACCAC
Right flanking sequence: Indices 159844 -- 160343
CCCTTGATCGTGAAATATCGATTGCTTGTTGAACTCTGTGAATTGCGTGAAAGTAGGATACTCCA
AATTCGGGAATCCAAGAGTTTTATAAAACGTTCTTGATGGAAAAAAATGTGAATGAAAGATCCCA
CTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCT
CTCAATTCGAAAATCCAGGATTTGACTTGATGTCCTTTCATTGATTCCTCCGAAATTGGATTGAT
TTATCCTCAAAATTTTAGTTCAATTGGAATTTGGTTATTCACCATGTACGAGGATCCCCGCTAAG
CATCCATGGCTGAATGGTTAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTAC
TGGATGCACGCCAATGGGACCTTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTC
ATCATCCATACATAACGAATTGGTGTGGTATATTCATATCATAAC
Done.