Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_042883
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 287405
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:9200 original size:12 final size:12
Alignment explanation
Indices: 9183--9229 Score: 69
Period size: 12 Copynumber: 3.9 Consensus size: 12
9173 ACTCCCTTGA
9183 GCTTGGTAAGGG
1 GCTTGGTAAGGG
*
9195 GCTTGGTAAGGT
1 GCTTGGTAAGGG
9207 GCTTGGT-AGGG
1 GCTTGGTAAGGG
9218 CGCTTGGTAAGG
1 -GCTTGGTAAGG
9230 TGGTCTTTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
11 3 0.10
12 25 0.81
13 3 0.10
ACGTcount: A:0.15, C:0.11, G:0.47, T:0.28
Consensus pattern (12 bp):
GCTTGGTAAGGG
Left flanking sequence: Indices 8683 -- 9182
TTTTTACCCTTTCGCATAAAGGAAGTGAAACCGTATGGAGCGGTAGTGCTTTGGGATGTCAATGG
TGAACACTTCACGGTGAATGGCCAGCGCCTTAAGCCATACCTTGCTGATGAGAGCATGCCAAGCA
AGGAAAAGTTGACGATCTGTTTAGCCTTTCTCACAACAACTTGCTCCTCTTCCTTATCATCTCTC
ACAACTTCCTCAAGCTCTTTTCCACTTCTAAGCATTATGTAAAATGTTCCCTTGGGTTTGCTTCC
GGTTTACCGGGTAGTGTTCCCATGGGTCTCTTTGATGAAGAGGCGGTTTAAGCAACTTGGTTGTC
AAGAGATTTGACATGAGAGGCCAAAGTTTCAAACTTCCCATTAAGATCATTGTACATGTTGTCCA
CCTTTGTGTTCATCTCAATGGTACTTTTCTTTTGTCCTTCAAGGAATTGTTGCAACATTAGCTTC
ACCTCACTATCTGGTGCAGTTGGAGCAGAAAAAGAACTCCCTTGA
Right flanking sequence: Indices 9230 -- 9729
TGGTCTTTGTTGGAGCAGTAGCCCCTCTAGCTTGGAACCCTTGGTTGAAAGGCCTTGGTTGGAAT
CCTTGACCTCCAACATAGTTCAACTCTTCTTGTGGCTCCTCATACCCTTCAACACCAAAGTCTTG
GTACCCTTGATATCCACCATACTCTTCACAAGAGTTTACCGTCATCTTTTCTTTTGGTCACGCTT
CAATATCTTATCCATTTTTGCATTCAGCTCTTGGATGGCATGATGAGATTCATCATTGTTTTTCC
TTGTAGTCCGATCATAATCCGAGCCATGACTCCCATTGCTTTGTGCGAGATTCTCTACCAAAGTA
TAAGTATCGGCTTCCTCAATTGTTTGACTCATGAAGCTTCTCGTAGACACCAGAGCTCTGGAGAG
GTTTAAATAACTCGACTGAAAGGAAAGGAACGAAGTCACATCTTTCGCCCAAGTTCAGCGGACTC
AATCGCACCCTTCCTTCGTCGTATAAAAGATAGTTCCGATCGTTG
Found at i:9222 original size:24 final size:24
Alignment explanation
Indices: 9183--9231 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
9173 ACTCCCTTGA
9183 GCTTGGTAAGGGGCTTGGTAAGGT
1 GCTTGGTAAGGGGCTTGGTAAGGT
9207 GCTTGGT-AGGGCGCTTGGTAAGGT
1 GCTTGGTAAGGG-GCTTGGTAAGGT
9231 G
1 G
9232 GTCTTTGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.14, C:0.10, G:0.47, T:0.29
Consensus pattern (24 bp):
GCTTGGTAAGGGGCTTGGTAAGGT
Left flanking sequence: Indices 8683 -- 9182
TTTTTACCCTTTCGCATAAAGGAAGTGAAACCGTATGGAGCGGTAGTGCTTTGGGATGTCAATGG
TGAACACTTCACGGTGAATGGCCAGCGCCTTAAGCCATACCTTGCTGATGAGAGCATGCCAAGCA
AGGAAAAGTTGACGATCTGTTTAGCCTTTCTCACAACAACTTGCTCCTCTTCCTTATCATCTCTC
ACAACTTCCTCAAGCTCTTTTCCACTTCTAAGCATTATGTAAAATGTTCCCTTGGGTTTGCTTCC
GGTTTACCGGGTAGTGTTCCCATGGGTCTCTTTGATGAAGAGGCGGTTTAAGCAACTTGGTTGTC
AAGAGATTTGACATGAGAGGCCAAAGTTTCAAACTTCCCATTAAGATCATTGTACATGTTGTCCA
CCTTTGTGTTCATCTCAATGGTACTTTTCTTTTGTCCTTCAAGGAATTGTTGCAACATTAGCTTC
ACCTCACTATCTGGTGCAGTTGGAGCAGAAAAAGAACTCCCTTGA
Right flanking sequence: Indices 9232 -- 9731
GTCTTTGTTGGAGCAGTAGCCCCTCTAGCTTGGAACCCTTGGTTGAAAGGCCTTGGTTGGAATCC
TTGACCTCCAACATAGTTCAACTCTTCTTGTGGCTCCTCATACCCTTCAACACCAAAGTCTTGGT
ACCCTTGATATCCACCATACTCTTCACAAGAGTTTACCGTCATCTTTTCTTTTGGTCACGCTTCA
ATATCTTATCCATTTTTGCATTCAGCTCTTGGATGGCATGATGAGATTCATCATTGTTTTTCCTT
GTAGTCCGATCATAATCCGAGCCATGACTCCCATTGCTTTGTGCGAGATTCTCTACCAAAGTATA
AGTATCGGCTTCCTCAATTGTTTGACTCATGAAGCTTCTCGTAGACACCAGAGCTCTGGAGAGGT
TTAAATAACTCGACTGAAAGGAAAGGAACGAAGTCACATCTTTCGCCCAAGTTCAGCGGACTCAA
TCGCACCCTTCCTTCGTCGTATAAAAGATAGTTCCGATCGTTGAG
Found at i:11490 original size:29 final size:29
Alignment explanation
Indices: 11455--11580 Score: 252
Period size: 29 Copynumber: 4.3 Consensus size: 29
11445 GAACTTGAGT
11455 TACTCGACCACTCGGAAGAGGAACGAAGG
1 TACTCGACCACTCGGAAGAGGAACGAAGG
11484 TACTCGACCACTCGGAAGAGGAACGAAGG
1 TACTCGACCACTCGGAAGAGGAACGAAGG
11513 TACTCGACCACTCGGAAGAGGAACGAAGG
1 TACTCGACCACTCGGAAGAGGAACGAAGG
11542 TACTCGACCACTCGGAAGAGGAACGAAGG
1 TACTCGACCACTCGGAAGAGGAACGAAGG
11571 TACTCGACCA
1 TACTCGACCA
11581 AAAGAAAAGG
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.34, C:0.25, G:0.29, T:0.11
Consensus pattern (29 bp):
TACTCGACCACTCGGAAGAGGAACGAAGG
Left flanking sequence: Indices 10955 -- 11454
TCACAAATCCCATCGCTCGAAAGAAAGAGGGTTTGGAGTTAGTTACAAGCTGGACTAAGACTGAA
ATGAAGGAACCAGATGGAGGCTGATGCAACGGATAGGAGTTATGCTTTTTGGAAATGAGGATTAG
CAATCATTCGACAGTTGGGATGCCGCTTTCACTAGTAAAAGATATCCACGCAAGGAAAGAAAATG
CCCCGCCGGAAGAAAAGTAATTAAGTTAAAGAGTGTCGGTTTGGGGTGAGGCTTACTCCTCGACC
AAAAGAATTGAAAAAAAAGCAAGACTAACAAGTAGAGGTGGTTTTTTTCCTAAGCCAAAGAAGGG
TTTGATTCCACCTCAACTGAAAGAGAGTCAGTAGCAGAACTTAACTAAGCAGCTGCAGAGTTTCG
CTCAGTCTAATCTAAGTAGCTAGGCTAAGAGTCAGACAGTAGGCTTCCGGTAGGGACAGGGATCG
GGTGGCCTGACTGGCTCAACTAATTAGTAGAGGAGGAACTTGAGT
Right flanking sequence: Indices 11581 -- 12080
AAAGAAAAGGTTAGAACCTGCTCGGCCGACTAAAGCTAAAGGGATAGGGGAAAGAAAACTGCTTG
AATAACTAGTGGGTTACTACTCGATCGACTAAAACAGAAGTCAGGGAAAAAAACCACCATCATAC
TGTCTTTTCCCTTAAAGAAAGTAAGGCATCCCAAGGCAGGGAAGGAATCTGAACCAAGGAAGGAT
TCTGCTGGAGCTGCAGTCTCGGAGTTTCAAACTGACCTTTAGGCACTGACGTGACTCTTCCACTT
GTTGATGAGGAGAGGGATTGATTACTCGACTAAAAGGAGAGGGTAGCAGAATACCATTAAGAAAA
ATATCCCATTAGTGCTGCTCTTTCCTAAGTCAAATACCTAACAACGAGAATCAGGAGGGAGCTTC
TGGGTAGCATCAGGAGACTTACTTACTAGAAACTAATAAAATAGTGAAGGTTGTAGAGAAGGCTT
CTTATAAGATAAGGGTACAGTAGCTCGTATCGAAGAATATTCTCG
Found at i:21241 original size:18 final size:18
Alignment explanation
Indices: 21218--21259 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
21208 TTTGCCAGAC
*
21218 GATGGATAGG-ACCTTCTT
1 GATGGA-AGGTACCGTCTT
21236 GATGGAAGGTACCGTCTT
1 GATGGAAGGTACCGTCTT
21254 G-TGGAA
1 GATGGAA
21260 TACGCCTCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (18 bp):
GATGGAAGGTACCGTCTT
Left flanking sequence: Indices 20718 -- 21217
TGGGGATAAGTCCTTCGACATTATCTTAACCCAGAACCGCTTGGCGAACTCAAGACAACCCGTCT
CAGATACAATAGACTTGGCATCAGATATATCTACTTGCAAAGCATCAAGTAGAGAACGGTACTCC
TTAGCCACACTACGATCGGCAATGACGATGTCATCACCTAACAAAGCGTAGTCGAGAAATGGTCT
CGTCTGATGAGGATATGCTCGTAATGCTGCCAACCACACAATAGCATGGTGGGACAACGCGAATA
GAGCCCAGGAGCCGTAATAACCCAAAGGTTGACCTGCAACAAACACAACTTCGTCATGCCGTCCA
GTAACGGACTTCAAAGAGCATGAGTTGAGTGCTAAGGCACCATTGACAATGCACGATGCCATCGT
TTGACCGAAAAGGCACGCCATAAGCTCATATATGACTGGAACGGGCCACCGATCGGTGGCAGCGC
TCAAGTCAAAACTTGCTATAAATCTTGGGCGTCTCTTTGCCAGAC
Right flanking sequence: Indices 21260 -- 21759
TACGCCTCAGAACAGACATACCCCACACATGCACGGGGTATAACAGACGTTGTTTAAACCAGTTA
CCGATTACAAACAAACGCCGCTTTCCGGCCACCCTCTAAGGACTGAGCCAAACGTCCGGAATAAA
GAGGTTGAGAAGAACGGTCGAAGCCCATGGCGAGGGAATCAAACACCAAGCCAGGCCAAGCCTCA
TAAAACCTCAACCCTTCATTAGCTGCCCAGGTACTAAATTGCGTATCAAACGGGTACAAAGTATA
CCCAGGTTGAAAGAGAATACCTGGACTGAAAATACCATCCGGTTCTGAATGAATGATTCGCAGCT
GGCGGGCAAAAGCCGCGATTTCCAAGAACATCGCAGAGAAGAAACAAGTCTCCTTCCGTTCTTTA
GGAGCAGGCTGCTCATCACTACCTGTAACCTTTTTAGACCACATGTGCAACTGAAGATTCGGTTT
CGGCGGACGCAGTTTTTTGAGCTTACGCTCTTCACGAAGTTGCCT
Found at i:36637 original size:29 final size:30
Alignment explanation
Indices: 36581--36651 Score: 126
Period size: 29 Copynumber: 2.4 Consensus size: 30
36571 AGCGCTCCTA
36581 TCCTCTCCTTTTCAGTCGAGTCACTAGGGT
1 TCCTCTCCTTTTCAGTCGAGTCACTAGGGT
*
36611 TCCTCTCCTTTT-AGTCGAGTCATTAGGGT
1 TCCTCTCCTTTTCAGTCGAGTCACTAGGGT
36640 TCCTCTCCTTTT
1 TCCTCTCCTTTT
36652 TTTAGTCGAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 28 0.70
30 12 0.30
ACGTcount: A:0.11, C:0.30, G:0.17, T:0.42
Consensus pattern (30 bp):
TCCTCTCCTTTTCAGTCGAGTCACTAGGGT
Left flanking sequence: Indices 36081 -- 36580
TTTGTCACGAGCTGGACTCGAACCAGCGCGTCTGGCAAAAAGACCATCCAGATTTGAACCTTAGA
CTGATCGTGACTTTGGTTACTCGGTTCCCCACGCGAACCCCACACGCCATGGGTACGTCCGAGGT
AGATTAACTACGAACTTTTTTCAAAAAAAGTTTGATATATTTTCCTCACTTACTAGCAAAGAACT
GGACTAGGATTCGTCCTTGGCTGCCTACGTACCCCTTTGGGAATCAAGTAAATCGTAGTTCTCTT
ATTTATTGTCTTCTTTCTAAGTCTTGCTTTCTTCTTTCTTTACTATTGCTTCTTTTTCTTTTCTT
TCTATAAAATGTTCCTCAATAGCACTGATTCTTCATATATTTTTGTCAAAGCAATTGGGTTCACA
AAGCATTATTTTCTCGGTCCATTTTCCACCTCTTTCTTTTGTCGAACCATGCTAAGCAAAGATGC
ACGGTTCCAGTCTTCTTTCCCTCCCCGTGTCCACTAGCGCTCCTA
Right flanking sequence: Indices 36652 -- 37151
TTTAGTCGAGTTACGTCAGTACCTTTTAGTCGAGTGGCTTCTCGCTCCTGTCCAGAACGAAGAGA
AGGCGAAAAAGCGCCGCCGAAGCAGCATGAGCGGGCTTCTATTGCTACGTAACAATAGAGCAGGA
TAGCATTTTGCGCCCACATGTTTGAATTTTAGGGTAAAAAGCTCGCTTGTTATACGGGATCCGAC
GCATCCAGCAGAGCGAAGCAGCGTTCCATTCTTTTCGGCGGCATCCTTCCGCATTGGCGGCGAGT
GGAGTGCCACAATCCCATTCATCATTTTTGATCTACATAAGCCAAAGCCCTCCGCACTGGCGACG
TCCCCGGCATAAATGCAAGGAGGATGTATAGCTGATATAGGATCTTGTGGAACAGGATTTGATTC
TGCAAGCGGTTCGGTACAAACAAAGAAATTTCGAACAAAAGGATCGGAACTCGCTGATAGGAAAG
GAGAGAAAAACAAAGCAATGCCAAGAGCTCCGTCAATTCGCTGTT
Found at i:36660 original size:32 final size:30
Alignment explanation
Indices: 36581--36662 Score: 121
Period size: 29 Copynumber: 2.7 Consensus size: 30
36571 AGCGCTCCTA
*
36581 TCCTCTCCTTTTCAGTCGAGTCACTAGGGT
1 TCCTCTCCTTTTTAGTCGAGTCACTAGGGT
*
36611 TCCTCTCC-TTTTAGTCGAGTCATTAGGGT
1 TCCTCTCCTTTTTAGTCGAGTCACTAGGGT
36640 TCCTCTCCTTTTTTTAGTCGAGT
1 TCCTCTCC--TTTTTAGTCGAGT
36663 TACGTCAGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
29 27 0.57
30 8 0.17
32 12 0.26
ACGTcount: A:0.12, C:0.27, G:0.18, T:0.43
Consensus pattern (30 bp):
TCCTCTCCTTTTTAGTCGAGTCACTAGGGT
Left flanking sequence: Indices 36081 -- 36580
TTTGTCACGAGCTGGACTCGAACCAGCGCGTCTGGCAAAAAGACCATCCAGATTTGAACCTTAGA
CTGATCGTGACTTTGGTTACTCGGTTCCCCACGCGAACCCCACACGCCATGGGTACGTCCGAGGT
AGATTAACTACGAACTTTTTTCAAAAAAAGTTTGATATATTTTCCTCACTTACTAGCAAAGAACT
GGACTAGGATTCGTCCTTGGCTGCCTACGTACCCCTTTGGGAATCAAGTAAATCGTAGTTCTCTT
ATTTATTGTCTTCTTTCTAAGTCTTGCTTTCTTCTTTCTTTACTATTGCTTCTTTTTCTTTTCTT
TCTATAAAATGTTCCTCAATAGCACTGATTCTTCATATATTTTTGTCAAAGCAATTGGGTTCACA
AAGCATTATTTTCTCGGTCCATTTTCCACCTCTTTCTTTTGTCGAACCATGCTAAGCAAAGATGC
ACGGTTCCAGTCTTCTTTCCCTCCCCGTGTCCACTAGCGCTCCTA
Right flanking sequence: Indices 36663 -- 37162
TACGTCAGTACCTTTTAGTCGAGTGGCTTCTCGCTCCTGTCCAGAACGAAGAGAAGGCGAAAAAG
CGCCGCCGAAGCAGCATGAGCGGGCTTCTATTGCTACGTAACAATAGAGCAGGATAGCATTTTGC
GCCCACATGTTTGAATTTTAGGGTAAAAAGCTCGCTTGTTATACGGGATCCGACGCATCCAGCAG
AGCGAAGCAGCGTTCCATTCTTTTCGGCGGCATCCTTCCGCATTGGCGGCGAGTGGAGTGCCACA
ATCCCATTCATCATTTTTGATCTACATAAGCCAAAGCCCTCCGCACTGGCGACGTCCCCGGCATA
AATGCAAGGAGGATGTATAGCTGATATAGGATCTTGTGGAACAGGATTTGATTCTGCAAGCGGTT
CGGTACAAACAAAGAAATTTCGAACAAAAGGATCGGAACTCGCTGATAGGAAAGGAGAGAAAAAC
AAAGCAATGCCAAGAGCTCCGTCAATTCGCTGTTCATCGATAGAC
Found at i:45040 original size:17 final size:16
Alignment explanation
Indices: 45018--45066 Score: 73
Period size: 17 Copynumber: 3.1 Consensus size: 16
45008 TATCAGGCAG
45018 TTTCAAAGTCATAGAT
1 TTTCAAAGTCATAGAT
45034 CTTTCAAAGTCATAGA-
1 -TTTCAAAGTCATAGAT
*
45050 TTTCCAAGTCATAGAT
1 TTTCAAAGTCATAGAT
45066 T
1 T
45067 CTGCTGGCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 14 0.47
16 1 0.03
17 15 0.50
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (16 bp):
TTTCAAAGTCATAGAT
Left flanking sequence: Indices 44518 -- 45017
CCCCTTGCTCCCAAGCCAAGTCCAGGTTTTTTTCCATCTCTATATGAGCCACGTAATGATTTGCA
TAGGATCAAAATCCAGAGACACACTTTCTTATAGCATTAACAAACCGGAACCCGGACTCAAGTCA
TTCGGTCATAGTAATGATTTTTAACAAAGACCAATTGTTAGGATTCTTTGCCTCCCTATCACATG
AACATCTTAATGAGATAGAAATGAATAGCCATCAAGAAGGGACTCTCACTTGAAGATTCCCACTG
GAAACGGAATAAGAAGGAAAAGCAGAAGGTCCGAAGGGCTTGATAGATCTCATTATTGGATAGAT
TATCCTAGTGGTTCTCACTTATTGTTATTATCCTATTATCCTAGTGGTTCTCACTTATTTTATGG
TACTTTTGAACCATTTTTTTTGAATACATAGTAGAAAAAAGTCATGCAAAAGAGCGTAGTGTAAG
AGAAAGAGCCTGTCAAGTAGGTCTACTCAATCTTCTATCAGGCAG
Right flanking sequence: Indices 45067 -- 45566
CTGCTGGCAGTTTCAAAGTCATAGATTCTTCTCGAAGAAAATAAGTCATAGTTCGCTTGATAATC
AGAGTTCACTTCATAGTCATAGATCACACTTTCTTCTAAACAGACTTCTATCAATCCTTTGGAGA
ATCCTAATCCACCCGTCTTCCCCAGTCCCTGAGCCCAGCTTGTAGCAAGCCAACTGTTTGACTTT
GCTAAGAGAAGAGAGAGAAGGGAAAGACAGACGGCAGAAAGCCTTAGTTGCTATGGAGTTTGATT
GCTTCCCCTGGGCCTCTGGCGTAAAAGGATTCGCACCTTTGCTAGCCCGGTCCCAATGAACCGAG
CGGGGCGCACACTGCAGCTTCCTGCATTCGTACTTATGACTAGCTCCCATCCTATTCTTTTAGTC
AGTCTAGCTAGTATCGGATTCGGAAAATGAAAGTGAGATCCTTGTACTGTGGTACTTTGCCTATT
CACTCATCTCCTTTAGTCGCAAGGAGGCAACCCAAAACAGCAGAG
Found at i:45058 original size:15 final size:15
Alignment explanation
Indices: 45018--45066 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 15
45008 TATCAGGCAG
45018 TTTCAAAGTCATAGA
1 TTTCAAAGTCATAGA
45033 TCTTTCAAAGTCATAGA
1 --TTTCAAAGTCATAGA
*
45050 TTTCCAAGTCATAGA
1 TTTCAAAGTCATAGA
45065 TT
1 TT
45067 CTGCTGGCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 16 0.52
17 15 0.48
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (15 bp):
TTTCAAAGTCATAGA
Left flanking sequence: Indices 44518 -- 45017
CCCCTTGCTCCCAAGCCAAGTCCAGGTTTTTTTCCATCTCTATATGAGCCACGTAATGATTTGCA
TAGGATCAAAATCCAGAGACACACTTTCTTATAGCATTAACAAACCGGAACCCGGACTCAAGTCA
TTCGGTCATAGTAATGATTTTTAACAAAGACCAATTGTTAGGATTCTTTGCCTCCCTATCACATG
AACATCTTAATGAGATAGAAATGAATAGCCATCAAGAAGGGACTCTCACTTGAAGATTCCCACTG
GAAACGGAATAAGAAGGAAAAGCAGAAGGTCCGAAGGGCTTGATAGATCTCATTATTGGATAGAT
TATCCTAGTGGTTCTCACTTATTGTTATTATCCTATTATCCTAGTGGTTCTCACTTATTTTATGG
TACTTTTGAACCATTTTTTTTGAATACATAGTAGAAAAAAGTCATGCAAAAGAGCGTAGTGTAAG
AGAAAGAGCCTGTCAAGTAGGTCTACTCAATCTTCTATCAGGCAG
Right flanking sequence: Indices 45067 -- 45566
CTGCTGGCAGTTTCAAAGTCATAGATTCTTCTCGAAGAAAATAAGTCATAGTTCGCTTGATAATC
AGAGTTCACTTCATAGTCATAGATCACACTTTCTTCTAAACAGACTTCTATCAATCCTTTGGAGA
ATCCTAATCCACCCGTCTTCCCCAGTCCCTGAGCCCAGCTTGTAGCAAGCCAACTGTTTGACTTT
GCTAAGAGAAGAGAGAGAAGGGAAAGACAGACGGCAGAAAGCCTTAGTTGCTATGGAGTTTGATT
GCTTCCCCTGGGCCTCTGGCGTAAAAGGATTCGCACCTTTGCTAGCCCGGTCCCAATGAACCGAG
CGGGGCGCACACTGCAGCTTCCTGCATTCGTACTTATGACTAGCTCCCATCCTATTCTTTTAGTC
AGTCTAGCTAGTATCGGATTCGGAAAATGAAAGTGAGATCCTTGTACTGTGGTACTTTGCCTATT
CACTCATCTCCTTTAGTCGCAAGGAGGCAACCCAAAACAGCAGAG
Found at i:56346 original size:15 final size:15
Alignment explanation
Indices: 56328--56361 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
56318 ACAGATCTTC
56328 CATTAAGGGATCTAA
1 CATTAAGGGATCTAA
56343 CATTAAGGGATCTAA
1 CATTAAGGGATCTAA
56358 CATT
1 CATT
56362 GATTTACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (15 bp):
CATTAAGGGATCTAA
Left flanking sequence: Indices 55828 -- 56327
TTTCTTATCCTGTAGTTTCATATGGAATGGTTTCAGCTTCCTCTACTCCTACTAGGTCTACTTAG
CCTTTTATTCCGAGGTGGCTTGCTTTCCTGGGGCTGCTAGTCTTTCCTATCCCTATGGTGTAAGG
AATGCTTACTATCCTATTTATTAGGTAACTCCCCCTCTCCTCTCCTTTCTTAGCTCTAGGCTTCA
GCTTTCCTTCATCACAGTGAATGTAAGCAACACACCCAAATCTCCTGAGATATGAATAAGTAGGG
ACTGATTGAAACCATACCTCATCTGGAACATGGAAATTGATTGCTGTGGAAGGGTATTTGTTGAT
GATGTGCACAGCTGTGTTTGCAGCATCTGCCCTGAAAGTCTTGGGAAGTCCACACTCACAAAGCA
TACTTCTGATCTTTTCAATGATTGTGCGGTTCATCCTTTCAGCTACCCCGTTTTGTTGAGGGGTG
TATGCACATGTCTTACAATCCCATTTCTCCGATTTACAGATCTTC
Right flanking sequence: Indices 56362 -- 56861
GATTTACCATTCCTCCTATGAAGTGAACAACTAACCAAACCTTTCTTCCTTGGCTTACTTGGCTT
CCGTTGCTTTCCTACCATTCCCAACTAACCTACTTTCCTAGTTCTTTGATTCTGATATTCCTATT
CCTGGGATTACTAGTTCTCACATTCCTCTTTTCTTTCTGGTTTCCCGGATTTCTCTTCTTCCTAC
TTTCTTTGCTCTCCTGGCTTTCTGGATGTGAGGGTTAGAACTATCTCTAGCTCTCCTAGCTAAGA
TGTACGATGTCTGATACCGATTCAAGCTCACTCAGAGATATATGATTTATGTGTTCTATGGGTTT
GAAAACAGGGATGGTAGGGTTTCTTCCATTGAAAAAGAAAGAAAGCTTATTTAGGACCTCTGAGA
CCGTTTAGCTCTTATTCCTCTTTGGAAGTTACTTTGTGATGGGGATTGGGTCTTCTGTGAGGGAT
CATTCTATTAAACGAATAAAGTGAACGTTTCCGGACGTTTTCTGG
Found at i:65706 original size:19 final size:19
Alignment explanation
Indices: 65682--65720 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
65672 ATGAAACCTT
65682 ACTTCAGGTGAATACTTTG
1 ACTTCAGGTGAATACTTTG
* *
65701 ACTTCAGTTGGATACTTTG
1 ACTTCAGGTGAATACTTTG
65720 A
1 A
65721 TAGTTCACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (19 bp):
ACTTCAGGTGAATACTTTG
Left flanking sequence: Indices 65182 -- 65681
CAAACAACAAAGACATTCTAACAGTTGCCTCGCTTTCATCCTTATAAGTGGACAGACTCATCCGC
ATTCTCCGCTTTGAACAGAGTTTGCTTCTTCGTTCGCCTTCCCTCACACTACTGAGCTACAACCA
AGCTCGGCAGAAGCAGGACAGAGATTTAAGAACCGTGAAGTGAGCCCAAACAAGGCAGAAACAGA
AACTGCAACCAAATAGGCTGAAAACAGTGCGGCAGCACTAGCCGTCCCAGTAACAGCAGCAGTAC
GAGCATTCCTTAGCCGCTTCAGGAGGGTCAAACGACCGGACTACGTCCTATCCTCGTTCAAACCC
TCCTTCACTACATTTACCAACAGTAGGACATTTAGAAAGTGACGATTTAAGAAGGCACTCGCTTC
GCTCACTTGACCGGAGGGGACCTAGAAGAAAGAAGAATAGACGCATTCACAACCTTACTCGGCCA
GACAGTCTATCATTTCACAAAAAAGGCAGACCATTATGAAACCTT
Right flanking sequence: Indices 65721 -- 66220
TAGTTCACTACTACGATAGGGGAATACTAGGCTAGGGAACTACTTGGGAAGTCATCTCTTTACTT
AACGAACTAACCACTCAGGGATTCAAATCCACGATACTCCTACCATCTGCTTGATCCAGTTGAAA
ACTTTACTCCGACTTCACATCAGCCCTTAGGGTCAACACAGCTCCTCTTATCCTTTACTCTTTCT
ATGCCTGGATTCCTATGCCTGTTTTACCTCGAGTTGGAATTCAGTGGGAGAAATTCCAACAAAAT
TCAGTGGTAGAAATTCTCCAGAAAACGAAAACGGCGATTCCAACTCTACAATCAAGGCAGAACGC
AGGGAGGAGAAGAGAATAGATTATAGACGGCGGACCGGACCCAAGCTAGGCTGAAGGCAGACCAA
GCGGAGGCTGAAGGCATACATTCACTCAGAGCTATACGCGTTACGGCAGCTGCTACCTTCCTTCA
AAGGAGATACCAAATAGAGGCTGAAAACAACCAAGTAGGCTGAAC
Found at i:66893 original size:19 final size:19
Alignment explanation
Indices: 66871--66924 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
66861 CCAGAAGATC
*
66871 AAAGTAGGGGTAGAAAGAG
1 AAAGAAGGGGTAGAAAGAG
*
66890 AAAGAAGGGTGT-G-ACGAG
1 AAAGAAGGG-GTAGAAAGAG
*
66908 ACAGAAGGGGTAGAAAG
1 AAAGAAGGGGTAGAAAG
66925 TAGGTGTAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
17 2 0.07
18 13 0.46
19 11 0.39
20 2 0.07
ACGTcount: A:0.44, C:0.04, G:0.43, T:0.09
Consensus pattern (19 bp):
AAAGAAGGGGTAGAAAGAG
Left flanking sequence: Indices 66371 -- 66870
GCAAGTACTCACATTATCACGCGGGGCAGAGGGACCATCTCATCCAGTCAATACGGGTCCACCAC
TTCATCCTCCCCAGCCATCGGGTCAGCCATGCCAAACAGCTAGGACATCTCAGGACCGGTCAACC
AGGAGATCCATCGCCAACAGGGGCTCCAGTACAAACAGTAGGGAGGCGGATAGACCATCTGTCAG
TTCCAATAGCCAATCAGTCAGGCTATTTAGCAGTCGGGACATCCGGAACATTCTATTCCATCGGT
TAATCAAAGAAAGGATATGCTCCTACCGAAGTTCATTGAAGTTATCGGTTAAGGCTTCCCTTCCA
TTAGATCCGTAGGATCTCGAGTTTTCTTACCGCCTCGATCGGCTATGGGATATGCAATTCTCTTC
CCTGACCTAACACAGAGCAAAGTACGCGCTAGTGCTAGTACACGAGTAAACCGCTTTCACCTAGC
TATTGCTCACTAACAGAACCTTCCCGTACTTGTCTCCAGAAGATC
Right flanking sequence: Indices 66925 -- 67424
TAGGTGTAGAAAGAGAAAGAAGATATTAACTGATGCTTCACTCACTAGCTACGCTATACCATAAA
TCTAAAAGACTGACCTGCCTATTACTGTACTGAATTCAGTCTAAACAACGATGTTGCGACACTCA
CACTCAGTCCGGATTTGAGCTTTGGTACTGGCTTGGCCATGAGATCGATCGCTCCTAAGGTCAGC
TGACTAGTGATAGAAGACTGGCTTGTCGCTGATTTCCAACCACCCTCACTGACTGCCCTTGTGCC
TAGATCCTCTTGCTAATTTCAAAGACTAGTTCCTTCCAGCTGCGGAAAGTCCGAAAAAGAGTTGA
GGTTCTATTTTGACTTGCCACTGTCTCTATAGATCGATTCACTTCTTGACTTGAGACCTGACATA
GAATACCAACTCTGGGGAAGAGAGATTCACCAAACCCTTGTAGTTGTGCTTTTCGCTCCCTCCTA
AGGTCTTTTCACTACCCGGCTACTAACAGGAAAGGATGACTTTAG
Found at i:68987 original size:29 final size:29
Alignment explanation
Indices: 68945--69080 Score: 272
Period size: 29 Copynumber: 4.7 Consensus size: 29
68935 TCGGCTGCTT
68945 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
1 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
68974 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
1 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
69003 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
1 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
69032 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
1 CCTCTCCTTTCAGTCGAGTTACTAAAGTA
69061 CCTCTCCTTTCAGTCGAGTT
1 CCTCTCCTTTCAGTCGAGTT
69081 CCCTTGGACC
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 107 1.00
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.35
Consensus pattern (29 bp):
CCTCTCCTTTCAGTCGAGTTACTAAAGTA
Left flanking sequence: Indices 68445 -- 68944
TGTAATGTAATGAAGGTTTGGTGTTGATTCTAGACTAGACTGGAAATAATCCTATGACTGACCTA
GCTCAAATTTGAGGGGAAAAGCGGAATCCGCGGGATAAAAGGGGATAAAAAAGATATGTTAGTTC
GGAATAAACAGGATATGCTGCTGAGGGAAATACTGCTTCGAGAGAGGGCGGTACGGAAATAATTG
AGTGATTCACTTAAGACTTCAAAGCGTTATGGTTGTGCTTCTTTAGAGGGAAGCAAGCGCGCCAA
GCTAAGAACAATTCAATACCCGTCTACTTTTTGAAAAAAAGGAAGATTTCTGCTACCTTCGGAAA
ACAAGGTAAAAATGACCGGCTTTCGCGAAAGCTATTTTGAGCGGTGCTTCTCCTGTCTACTCATA
GAAACTAGAACCAATCTGTTTTGTTCCACTTTGAAGTGAAGCATGACCGGAAAAAGATCAAATCC
TTCCCGGCCTTTCTTACCATTATTCCATGCTAGGATCGGCTGCTT
Right flanking sequence: Indices 69081 -- 69580
CCCTTGGACCTCTTCTGAAAGCATTTGAGACTTCTCGTGCTGAAAAAGAGAATTTCATTGACCTA
CGGCACGGAAGGAAAGCACCGCTGCTAGCTCGCCTTGTCCACGGAACTTATCCTGTTGAGAATCC
TATCTTGCTTGACTGCGCTGGGAAGTCTTTCCTTAAAGCATTGATTTTACTTGGAGTATCCGCTT
AAGTGAGAAAAGGAACTTGATTTAGCTTGAACCTTGAGCCGTAGAAGAGGACCTTTCAGAAGGAC
GGCTGGCTTTAGCCCTTGAGCATGGACAAGAGTGAACCTATTTAAAGGTTTACTGTATCGTTTAC
TGGTGATGGGAATATGTAATATTGTTGTAGAAGTTTCCAGCCTCACAGGATTTAGATTGAACTAT
GGAACCGAGCGAAGACCTTTGAGATTGAGATTCCCCAGTCCACTTATGAAATGGATCCGGATTAA
CCGCTTTCGACTGAGATGTAAAGTCACCTTCGCCTTTGCTTTTCG
Found at i:74483 original size:34 final size:34
Alignment explanation
Indices: 74438--74516 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
74428 CGCGACTTGG
*
74438 GAAACCCTTTCTTCATTCGTTTGGCGGGAAAGGA
1 GAAACCATTTCTTCATTCGTTTGGCGGGAAAGGA
74472 GAAACCATTTCTTCATTCGTTTGGCGGGAAAGGA
1 GAAACCATTTCTTCATTCGTTTGGCGGGAAAGGA
74506 GAAACCATTTC
1 GAAACCATTTC
74517 GTGCCTTCGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (34 bp):
GAAACCATTTCTTCATTCGTTTGGCGGGAAAGGA
Left flanking sequence: Indices 73938 -- 74437
CGGCTCTTGACCTCCGATCGAGCTACGAGCACGAGTAGGTAGGCGGCATCTGTCTTTTTTTTTTG
AAGTTGAGTCATTTCCTTTCCTAAGACGGCTCCTCTTATTCTACGATAATCCAAGCAGCTGCTGC
CCGAGTCCGCTCGGAACCAGTCGATTCCTGAGCCTGGACTCAAGGTCTCTCCTGCCTGCGAGTTT
GCTGCGAATGCTGCGAGTAAATACATGAACGAGACGAGTGAGTTAGTCTCCGAGCGAATCCGGCG
GGTCTTTCAAACATCCAAGTTGCCACTTTTCAGCTACTTGGAATGCATGAGACCCCTGCATTTAG
GAATCTTAGGTTACCTCCAGCCTTCTGAAGCGAGTTGACTTTCTGTTGACCTTATATTATATCTG
TCTACCTTATATAATAATGAATATGAAAGGAAAGCACTAACTCCTGAGCTTGGGCAAAGTTGGCT
AATCGATTTAGACTATTATAATAGAATAATCAATCCGCGACTTGG
Right flanking sequence: Indices 74517 -- 75016
GTGCCTTCGTCCTAGGCTCGGCTACTTCTTTCTCAAATAAGACAAAGATTGCACTAGACCTTGAG
CCCGGGAAGACCGCTACTAGCCCTTTACTCTATTGGATTGATTTGGTCGAGACCCGGTTTCTCCT
TCCTAGAAACCTGAAACTGCAATCCGCGAACGACCGCTTTCTTCCTTGTTAGCCTAATATCTTAC
TCTCGGACTACATTTGTCTAAGAGCAGTTGAGGAATCTGCAACTGAAAGAAAGGAATCATGGAAT
CTGAACCCAAGGTTCAAAAAAGGGGAAAGAACTACGGAAAAGGGTCTATCACGTTAATCGTCACC
CACTTACGCTCCCAAGCCATTTCTGGAATTGAACTTCCTCGGAACAGCTACAATGCTTTGAATTC
CTCTGTGCTTTCACGAACAAGCCGAATAACCTTCTATTTCGGAAGAGGCATTCTGATACCATTCA
CCCATAGATGATATTGAGAATTCAGGTTGAAAGCCCATCAACTTA
Found at i:76101 original size:18 final size:18
Alignment explanation
Indices: 76078--76119 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
76068 CGTTCGTTCG
76078 TTGGCGCAAAAGCCTCGT
1 TTGGCGCAAAAGCCTCGT
**
76096 TTGGCGGGAAAGCCTCGT
1 TTGGCGCAAAAGCCTCGT
76114 TTGGCG
1 TTGGCG
76120 GGAAAGCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.17, C:0.24, G:0.36, T:0.24
Consensus pattern (18 bp):
TTGGCGCAAAAGCCTCGT
Left flanking sequence: Indices 75578 -- 76077
CAACCCGGGTTACAGCAATGGGGATTCTCTCTTCTATTAGAAATGATATTATATTGGTGACTACT
CCCTTCAGATTGAAGATTTGAAAGATAACACGCCCACCGCCGGATACTCTTCACGTGCTGATACC
TATATTGGATTGGTGAACAACCCTGGAGTTTAGGACATTTGAAACTATAGAAAGACCTTAGCCGC
TTTTATGATATAGTCCTGAAGACCTAACTCTTAGAAATGACCTACTAACTCATCGACAAAGAAAG
GACTTCGCCTTGACCTTCTGACCTAGACGTCGAACCAGTGCCTTGGATTCATCAACAAAGGGATC
AAAGGAACTCATCTGTCCCTCCAAACGGAAATCTTGGTTTTGTAATTTGATCTCTGACAAAGGGA
GAGGGAAAGAAAGACCAATCCGTATCTTTGAAAGAAAAAGATTCTCAGAAACGCTACCACCGAAC
ATCGACTTACTCGGCATCTTCGGATTCAAGCATTTCGTTCGTTCG
Right flanking sequence: Indices 76120 -- 76619
GGAAAGCATTCATTCGTTTGCGGGAAAGCAAAAGCGTTAAGCATTGACTTCCTAAAGCGACTTCT
TAGCGTGCTTCAACAGCGCCCAGATAATGCCTTGACCGGAGCCGGAGGGAGACCTAAACAGAAGA
ACGACCTCGCAGTGGCAACATAGCCCATCCTCAACTCATACCTCAGATTTTGAACCATACTTTGA
GTCCTCAAACTTTGAGATGGACTGGACCAACACTCTTCTTTGAGATGGAATTCCCACCACTCTTA
TTTGACATGAACTGTAACGCTACTCTTTCAAAGATACCTAACAACCTTAGCTGGCATTGATCACT
CTTCCTTCCCAATCCCTCCATTTAGAATTGCAAACATCCCAACTTCCAGAGCTACCTATGAGCCA
AGGGCGGAGGGAGATATATTAGACTGATCAACTTCAAACAAAACGACCTTCCTGGATTCGCTTTC
ATCTCCTTCTTTGAAACGACTCAAATAATTGAGTGGGCATTGGGA
Found at i:76120 original size:18 final size:18
Alignment explanation
Indices: 76086--76126 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
76076 CGTTGGCGCA
76086 AAAGCCTCGTTTGGCGGG
1 AAAGCCTCGTTTGGCGGG
76104 AAAGCCTCGTTTGGCGGG
1 AAAGCCTCGTTTGGCGGG
76122 AAAGC
1 AAAGC
76127 ATTCATTCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.37, T:0.20
Consensus pattern (18 bp):
AAAGCCTCGTTTGGCGGG
Left flanking sequence: Indices 75586 -- 76085
GTTACAGCAATGGGGATTCTCTCTTCTATTAGAAATGATATTATATTGGTGACTACTCCCTTCAG
ATTGAAGATTTGAAAGATAACACGCCCACCGCCGGATACTCTTCACGTGCTGATACCTATATTGG
ATTGGTGAACAACCCTGGAGTTTAGGACATTTGAAACTATAGAAAGACCTTAGCCGCTTTTATGA
TATAGTCCTGAAGACCTAACTCTTAGAAATGACCTACTAACTCATCGACAAAGAAAGGACTTCGC
CTTGACCTTCTGACCTAGACGTCGAACCAGTGCCTTGGATTCATCAACAAAGGGATCAAAGGAAC
TCATCTGTCCCTCCAAACGGAAATCTTGGTTTTGTAATTTGATCTCTGACAAAGGGAGAGGGAAA
GAAAGACCAATCCGTATCTTTGAAAGAAAAAGATTCTCAGAAACGCTACCACCGAACATCGACTT
ACTCGGCATCTTCGGATTCAAGCATTTCGTTCGTTCGTTGGCGCA
Right flanking sequence: Indices 76127 -- 76626
ATTCATTCGTTTGCGGGAAAGCAAAAGCGTTAAGCATTGACTTCCTAAAGCGACTTCTTAGCGTG
CTTCAACAGCGCCCAGATAATGCCTTGACCGGAGCCGGAGGGAGACCTAAACAGAAGAACGACCT
CGCAGTGGCAACATAGCCCATCCTCAACTCATACCTCAGATTTTGAACCATACTTTGAGTCCTCA
AACTTTGAGATGGACTGGACCAACACTCTTCTTTGAGATGGAATTCCCACCACTCTTATTTGACA
TGAACTGTAACGCTACTCTTTCAAAGATACCTAACAACCTTAGCTGGCATTGATCACTCTTCCTT
CCCAATCCCTCCATTTAGAATTGCAAACATCCCAACTTCCAGAGCTACCTATGAGCCAAGGGCGG
AGGGAGATATATTAGACTGATCAACTTCAAACAAAACGACCTTCCTGGATTCGCTTTCATCTCCT
TCTTTGAAACGACTCAAATAATTGAGTGGGCATTGGGAGCCTTAT
Found at i:92381 original size:19 final size:19
Alignment explanation
Indices: 92357--92397 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
92347 ACAATAAGAC
92357 TCGGAAACCGT-AGTGACCT
1 TCGG-AACCGTGAGTGACCT
*
92376 TCGGAACTGTGAGTGACCT
1 TCGGAACCGTGAGTGACCT
92395 TCG
1 TCG
92398 TTCGAGATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (19 bp):
TCGGAACCGTGAGTGACCT
Left flanking sequence: Indices 91857 -- 92356
CAGATTACTATTCAACCAGTTGGATAACAGATAACAAGGGAATAGCCCGGTCAGGCAACTTCTCC
CTCTGTGCAGCATTTGCTTCGACAGATTGAGGGGGTCGTAGATCAGGCAACAGCAGATAAATCTA
TTGAATGTCCATCAGCCGTAAAAGAAGGGCAGGGCACCCCAGGGGCTCATCTTCTAACTATAGGG
AAAAGAAGAACAAGAAAGACTGTAAGACAGAAACGGAAAGAGTATGCGCGGACTAGGTTGAGAAT
CTCTGCGAGGCAGCACACCGGTATAAGATAGTTTAAGAATTTAGCTCAGTGTGCTGCATCAATGA
TCTTCTTATTGGAAAGCTGAAGATCAAGGCACCATGTTCGGGTGGGTCAACTCCTCCAAGTAGCC
CTAACGAAGTAACCCTTCAGGGCCAACGGAGTAGCCCTGGCGTAGCAACCCCCTGTGGGCCTGAG
GGTTGAGGGTATCTGTCATACGTGGAAGAAGAAGAACAATAAGAC
Right flanking sequence: Indices 92398 -- 92897
TTCGAGATGCAGTATGAACTCGGAAGACTTGCTTCGCTAGCACCGTATGGGATAAATCTTCATAT
GGAGGAGAAGGAAGACTGAGGAACTGCACATGCGGCGTCCTTGCGAAGTAACCCCCAACGAAGTA
GTCCCCACTGGGATTGAGGGTTCGGCTTGTTGCGTGCTTCGCCATGAGTATGAAGAGTTGCTTCG
CTTTTTAAAACCGTATGTGAACCCCAAGGGTGTGCTAGATGATGAGGGGTGAGGGGATGGGGTTC
CTGCACTCTATGGAAAATGTACTTTTGTAATAGTAAAAGATTTCAATTCTAAAAATTTGATAGAG
TTGGTGATTATGAGTGGAGGGAAGTACGGCTAGGACCTTTGGCCAAGTAAAGGATCAACCAAAGT
CGACGAGTTGGTTTGTGATTATTGGGTTTTCGAAGAGAGGGTTTTTGTAATCATGAGTTGGTGGT
CGATCGTCAGTAGATTCTGAGTTGAGTATGGTTTGGATACAAGAT
Found at i:112561 original size:18 final size:18
Alignment explanation
Indices: 112538--112581 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
112528 TCTTCCTTCC
* *
112538 TTCGCTCTAACGGGTGGA
1 TTCGCTCTAACAGGAGGA
112556 TTCGCTCTAACAGGAGGA
1 TTCGCTCTAACAGGAGGA
112574 TTCCGCTC
1 TT-CGCTC
112582 ACTTGGGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (18 bp):
TTCGCTCTAACAGGAGGA
Left flanking sequence: Indices 112038 -- 112537
ATCCATTGAAGATTCCCTTGCTTATCGGCATTCCTGCCCTGTGCACTGCTTCCTCAGCTTCGAAG
CTTGGTTTGTTTGTCTCGAAGATTGACGACTTATTGGCTGTTGATTGACCGGTATCTGGTATGCT
TCTTCTTCCTTACAGTCGACTGTTGCTACTTCGGACTACTACCATTCACTGCTGAGAAGAAGCTG
TTGTTTAAGGAGCGGCACCGATCAGTGCCTTGTTCCTGTTACCAGTGTCTTGTCTTGGTTCCTTG
TGCCCATTGTCTCCTAGTGTTTTGTTGAGTTTACTGTGTCGATAAAGTCCTTTTTATTCGAGGAA
GTGTAGCCTTTTCAATTACAATTCTTTTATTCGTCCGAGTTTACTGTGCCATTTCGAGACTGTCC
TTCATCCGAGGTATCGTGTTTATTGTGCCATTTATAGACATTGAGGACATTACTGTGTTGTACCA
AGCACCAATAGTGTGAGGATTAAGCCGTTATTCTATCTTCCTTCC
Right flanking sequence: Indices 112582 -- 113081
ACTTGGGGTGGAGTAGCGTATGCACCTCTCTTTCTTTGTTGCCTCCGGTGTGCTACCGAGCCTTT
CCCAGGTATTTACTTACTGCCGGTTTACTCCACAGCATTGCCATCTTCTTTGTTTTGTTGGTATG
AGCTGATCGGCCCTCTCAAGCGTAAAGTAGTCCTCTGATTGTGTTGTATTGGCTCCTTAAGCAAC
ATTTGTTTACTTATGACCGGGTGCTGCTTATGCCTAGACATCTTCCCCAGGACTTCTTCTCGAAA
GACGTTGACCTATGGTAGGTGCTGAGTCCAGCACAGTTGTTCCTTTGTTACTGTGCCATTTCGAG
ACCTTCGTCCGATCATTGTTCCTTTGAAGACCTGTCTTTTATTCCTTCTCTTTCCTTGCAGTAAT
TAACTCACATTTATGGTAATGCTGATGCTTGGCAGCTTCACTGTTCCTTCTTGTTGTGCGTAGGC
TTGGCGTTGTTTACTCCACCGTGCTATCTTTGTGCTGCTAATCAG
Found at i:144436 original size:15 final size:15
Alignment explanation
Indices: 144416--144445 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
144406 ACCCTTCTTA
144416 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
144431 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
144446 CAAAGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGAAAACTGGCATC
Left flanking sequence: Indices 143916 -- 144415
AACTGTTAGAATTTCGATCGAACAAGTATTGGCATTCTGTCAGCATTTCCCCCGCGGTCAGTGAT
AGTTAGGAAAGGAATAAAAAAAGGGTGATACACGAGAAGCTAGGTCAGGTATATATAGCGATTGC
AGATGGTGCACCAGTTTCGTATACATAGGCCCTGGTTGGTAAGGTGATGAGATCGACACATTATA
TGCGATCTACGTTCATAGGTTCTACCTTGAAGCTCTTCTCCTTTCCTTACTCTAACAAGTAAGCA
AATAGGAATTACCTTGTGAAGCAACGTAAATTTAGTGAGTTTTGGGAGGTTAGCCTTAACACATC
CAAATCTTCCGAAGTCAATGTGGTTAGCAGCCACTGTCCCGACCTTTTCTGTCACTCCTTCCTTT
GAAAGGAGCTTCTCGCCGTTAAACTCAGCTCTTTTTCCGGCTTTACCGATTAGATCAGTTTAGAC
CTTACCTTGGGATTGGTTTTTTTCCTTTAAGGCTGACCCTTCTTA
Right flanking sequence: Indices 144446 -- 144945
CAAAGGTCCTCAACCAGGGAGAAATCGACAAATCTAGGATAAAGTCCACTTGAATCGACCAAAGG
GGAAGGAAGTATGAAAATCCAATTCTTTGACGGAAACTAAAGGCTAACCTACAAGCTAGCCTCGT
CGAATCGACTCACTCTCCTAACCTCAAAGGGAATCTGAGAAACAAGTAGATCAAGGATTCCCATG
TTGCCTATGGTGTCTTGCGAATTCCTAGGAATGTTAGGAATGTGAGAACCAGTAATCCCAGTAAT
CCCAGGAATAGGAGGTAAGGAGATTAGTTGGTTAGGAGGGAATCCCAGCAATATTAGCAATGAGG
TGATGAGATTAGGTTTGTTTTGGTTAGGGATTAGAGGAATGGGAGAGGTAAGCCAAGTAAGGTAA
GGAGTTTTTGTTTGTAGAAAGTTCCATTTCAATCTGCCTATCTGTTTGAATCAGTTTATCCCAAG
GAAGTGTTTTACTCTTTTAATTGGTAGTTGGTTAAGGAATCCCAG
Found at i:158232 original size:21 final size:21
Alignment explanation
Indices: 158208--158253 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
158198 AATCAGATGT
158208 CAATCTAATCGAAGAAGATTC
1 CAATCTAATCGAAGAAGATTC
158229 CAATCTAATCGAAGAAGATTC
1 CAATCTAATCGAAGAAGATTC
158250 CAAT
1 CAAT
158254 TCCAGTTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.24
Consensus pattern (21 bp):
CAATCTAATCGAAGAAGATTC
Left flanking sequence: Indices 157708 -- 158207
TTGAAACGCGGCGATAGCCCCTGCTTAAGCTACACCTGCAAAGGGATCACTCAAGAAGTAAGCTG
CGATTAACCAGCTCACTTCCTTCGTTCGATAGGGCTAGACGCGCCTTACACAAACGAACCCTCCG
GTAACGAAACAGGAAGAGACAGCAAGCCATGACGTTCCCAGTGATGTACAGATTCCTCTTCGCTA
AACTAAACCATGTACCATTCCGGGTGCAACGATTACAGACAAGAAAAACAGCACATAGAGTACAA
AATTTTACTAATTTGCTAAATTTTGGATTCTGACAGAGCAGTGAAGGAAGAATGAAAGCTAAACA
ACAAAAAGTTCCCAAAGAGTAAACAGGGAAATATCGAAAGAAAATAAAAATATCATTCCAGCTTA
AATAATAAGTAAGACTTGACTCTTTGTTACCTTTGTCCGTTCTCTTCTTTCTTTATATAAAAAAT
ATAAAAAATATCGAAAAAATATCGTAAGAGAAGAAAATCAGATGT
Right flanking sequence: Indices 158254 -- 158753
TCCAGTTAGAAATCGGATCAAGAAAACACCGCCCATAGTAGCTTTGCCAAGAGCGGATCAGGTCC
TTTTAGGCGATCCCGCGAAGCAGGTCTCTGGTGTCTAAGATCTTATCTGACTATTGGGAGATCAT
CTAACGTAGATATCAAGATCTTGCGGTCAGTCTGTGTTAACATCAACACCAATGTGATTCCCATT
GATATCAGCAAGTGAAGGATCGGAACTTGATAGAATGCCCCACCCGGGCTTATCGATTGATAGAA
AAGTATATAATCAGAAGGCTGCTTAGAGGAGAGTGATCTAGCTCTCTAACTCAAAATATTGTAAG
AAGAAGAAGAATCTTACGCCCCAAATTCCCATCTCTTTTTTCTTGGTTGGACCAACCGGCACCAG
CCATTTCCGTCTTCCTTAATTGGGAGAGTCAGAATCAGTCTCTCTTTGTTTGGGGGGAGCAGAAA
ATGAAGGAACCTTTGCTTTGAAAATGATTGTTCTAAAACGGTTAT
Found at i:164822 original size:63 final size:63
Alignment explanation
Indices: 164723--164848 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
164713 TAAGTAGATA
164723 CTTCATATTGCAACCTAATAAAATCAGCCAACTCCCCTGTTTCCATTTTTCACCACTCTTCAT
1 CTTCATATTGCAACCTAATAAAATCAGCCAACTCCCCTGTTTCCATTTTTCACCACTCTTCAT
164786 CTTCATATTGCAACCTAATAAAATCAGCCAACTCCCCTGTTTCCATTTTTCACCACTCTTCAT
1 CTTCATATTGCAACCTAATAAAATCAGCCAACTCCCCTGTTTCCATTTTTCACCACTCTTCAT
164849 TTTTCACCAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.27, C:0.33, G:0.05, T:0.35
Consensus pattern (63 bp):
CTTCATATTGCAACCTAATAAAATCAGCCAACTCCCCTGTTTCCATTTTTCACCACTCTTCAT
Left flanking sequence: Indices 164223 -- 164722
ATACTTTCGATCTCCGCCGAGATGCGTTCGTGCTCTCGCGCCCTAGCTTCTCGTTCCCAAGCCGG
TTCTTCGGGAAGGGGTTGGTTGACCGACGAGCTACGCCCGGAACTGGCCGAATCTTCGACCATAT
CGGACGTATAAGTAAACCATTCAGAAGAGGTGGTCCCGGCTTGGTGATTCACTATCTCCCCAGAT
GATCCCGAAACTGCCAATGTTCCCATAAAGACAGTAAATAGATCCGCGCATAATGTACCAAACCC
TGTTAAAATATGGCTACGTAGAAGAATTAGAAATAGGGATACTTGAAAAACAAGTGCTAGATAGC
ACCATTGTGTCATCCTCTTTCCTAAATACGGATTTAAGCATCGAAATAGTAAAATAGAAAAAACC
ACTAGAATAAAGAACATTAAAAGAGTGAAACGGGAAACGCCTTCTGATCCTAGTCCTAAAAACCC
TGCTACGGAACTACCGAGCAGAGGCAATAATATGATAAGTAGATA
Right flanking sequence: Indices 164849 -- 165348
TTTTCACCACTCTTCATAGCTTCTTGAACTTTCTTTAGGGTCTTGCTCCCTGAGTTCCAGAGTCT
ACACTCTCGCGTCATATGGCTCCGCCTCATATGGCTCCGCCCCGGAATATCATTTTAGATCGTAT
CCAAGCCTGCCTCCACTTTCTTATGTGAAAGAGGTGCTTGCTTTATGAGACTAAATGGAAACCTT
CTTTCGAGAATTCTACTCACGCTTTGTCATTAACTTATATTATATCTTATTTATTCCTCGTCGAT
TCTTACCCTCGTTCCTTTGATCTTGGACATCTCACTTGGAATGCATTCTTTTCGATCTTGTACTC
AGGGTACACTGAACACCAAAAAAATATCGATGAAACTCTGAGAACTAGAAGCAACGGAATCAAAA
AAGTCTATTCTTGACGTGAACGGACGCTTTGTCATTAGAGTGTGAGAACCTTAAGGAGAAAGCTT
TTTGATTGATTTGTTTACTCAACTCGTAAAGGCAAAGAAAAAGGG
Found at i:164851 original size:17 final size:17
Alignment explanation
Indices: 164829--164865 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
164819 CCCCTGTTTC
164829 CATTTTTCACCACTCTT
1 CATTTTTCACCACTCTT
164846 CATTTTTCACCACTCTT
1 CATTTTTCACCACTCTT
164863 CAT
1 CAT
164866 AGCTTCTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.00, T:0.46
Consensus pattern (17 bp):
CATTTTTCACCACTCTT
Left flanking sequence: Indices 164329 -- 164828
AACTGGCCGAATCTTCGACCATATCGGACGTATAAGTAAACCATTCAGAAGAGGTGGTCCCGGCT
TGGTGATTCACTATCTCCCCAGATGATCCCGAAACTGCCAATGTTCCCATAAAGACAGTAAATAG
ATCCGCGCATAATGTACCAAACCCTGTTAAAATATGGCTACGTAGAAGAATTAGAAATAGGGATA
CTTGAAAAACAAGTGCTAGATAGCACCATTGTGTCATCCTCTTTCCTAAATACGGATTTAAGCAT
CGAAATAGTAAAATAGAAAAAACCACTAGAATAAAGAACATTAAAAGAGTGAAACGGGAAACGCC
TTCTGATCCTAGTCCTAAAAACCCTGCTACGGAACTACCGAGCAGAGGCAATAATATGATAAGTA
GATACTTCATATTGCAACCTAATAAAATCAGCCAACTCCCCTGTTTCCATTTTTCACCACTCTTC
ATCTTCATATTGCAACCTAATAAAATCAGCCAACTCCCCTGTTTC
Right flanking sequence: Indices 164866 -- 165365
AGCTTCTTGAACTTTCTTTAGGGTCTTGCTCCCTGAGTTCCAGAGTCTACACTCTCGCGTCATAT
GGCTCCGCCTCATATGGCTCCGCCCCGGAATATCATTTTAGATCGTATCCAAGCCTGCCTCCACT
TTCTTATGTGAAAGAGGTGCTTGCTTTATGAGACTAAATGGAAACCTTCTTTCGAGAATTCTACT
CACGCTTTGTCATTAACTTATATTATATCTTATTTATTCCTCGTCGATTCTTACCCTCGTTCCTT
TGATCTTGGACATCTCACTTGGAATGCATTCTTTTCGATCTTGTACTCAGGGTACACTGAACACC
AAAAAAATATCGATGAAACTCTGAGAACTAGAAGCAACGGAATCAAAAAAGTCTATTCTTGACGT
GAACGGACGCTTTGTCATTAGAGTGTGAGAACCTTAAGGAGAAAGCTTTTTGATTGATTTGTTTA
CTCAACTCGTAAAGGCAAAGAAAAAGGGATCCGCCTCGAATCAAA
Found at i:164945 original size:15 final size:15
Alignment explanation
Indices: 164925--164954 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
164915 CACTCTCGCG
164925 TCATATGGCTCCGCC
1 TCATATGGCTCCGCC
164940 TCATATGGCTCCGCC
1 TCATATGGCTCCGCC
164955 CCGGAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.40, G:0.20, T:0.27
Consensus pattern (15 bp):
TCATATGGCTCCGCC
Left flanking sequence: Indices 164425 -- 164924
AAACTGCCAATGTTCCCATAAAGACAGTAAATAGATCCGCGCATAATGTACCAAACCCTGTTAAA
ATATGGCTACGTAGAAGAATTAGAAATAGGGATACTTGAAAAACAAGTGCTAGATAGCACCATTG
TGTCATCCTCTTTCCTAAATACGGATTTAAGCATCGAAATAGTAAAATAGAAAAAACCACTAGAA
TAAAGAACATTAAAAGAGTGAAACGGGAAACGCCTTCTGATCCTAGTCCTAAAAACCCTGCTACG
GAACTACCGAGCAGAGGCAATAATATGATAAGTAGATACTTCATATTGCAACCTAATAAAATCAG
CCAACTCCCCTGTTTCCATTTTTCACCACTCTTCATCTTCATATTGCAACCTAATAAAATCAGCC
AACTCCCCTGTTTCCATTTTTCACCACTCTTCATTTTTCACCACTCTTCATAGCTTCTTGAACTT
TCTTTAGGGTCTTGCTCCCTGAGTTCCAGAGTCTACACTCTCGCG
Right flanking sequence: Indices 164955 -- 165454
CCGGAATATCATTTTAGATCGTATCCAAGCCTGCCTCCACTTTCTTATGTGAAAGAGGTGCTTGC
TTTATGAGACTAAATGGAAACCTTCTTTCGAGAATTCTACTCACGCTTTGTCATTAACTTATATT
ATATCTTATTTATTCCTCGTCGATTCTTACCCTCGTTCCTTTGATCTTGGACATCTCACTTGGAA
TGCATTCTTTTCGATCTTGTACTCAGGGTACACTGAACACCAAAAAAATATCGATGAAACTCTGA
GAACTAGAAGCAACGGAATCAAAAAAGTCTATTCTTGACGTGAACGGACGCTTTGTCATTAGAGT
GTGAGAACCTTAAGGAGAAAGCTTTTTGATTGATTTGTTTACTCAACTCGTAAAGGCAAAGAAAA
AGGGATCCGCCTCGAATCAAAACGTTCTTTCTTTTCTAAAAACGATCTTTCTTCTCTTATGAAAT
TGATAGTTTGTGAGAGGGATGCAATAACTCGACTATTTACATATC
Found at i:172124 original size:20 final size:20
Alignment explanation
Indices: 172099--172138 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
172089 ATAGGAAGAT
172099 TGACTTCCTTTG-TTGGTAGC
1 TGACTTCC-TTGCTTGGTAGC
172119 TGACTTCCTTGCTTGGTAGC
1 TGACTTCCTTGCTTGGTAGC
172139 ATCCCTTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.10, C:0.23, G:0.25, T:0.42
Consensus pattern (20 bp):
TGACTTCCTTGCTTGGTAGC
Left flanking sequence: Indices 171599 -- 172098
AGGAAAGGACAGTATTCGGTGGATTGGACAAATTTGTTCTCCTTAACAAGCAAGCTCTCTAAGCA
AGCTGTTTTCTAGAAAAACTTTCTCTTGATATACCTGCGATTTCTATAAAAATGGCGAGATAGGG
AATCAAGCTCAACTCAGCAAATTGGTTTTGGCTAGAAAAAAATCAAGGGATTCTCTATTTGTCCC
TTTGGTTGTCCTTTCTCGTTCCGGACCCTGCTCGGCAGGTTGGCAACATGGGGATTAGCTGGGAA
GGGATGTTGTCTGAGGAAGCTATTCCGGAGGGAACTCAACTGATACGCGGCAAGCCCTTGAAAAC
AATCACTCGCCAAGAAACAGAGTACAGACTGGAACAGACCAAACGGAATCCATCTAGTACAATTC
TTCCCTCAGGACAGCTTATACTAAGATATTGACTAAAGGAATGAAAGAATGAGCACTGCCAGCTA
CAACGGATGCGTGACTTTTCCTTAGAAGCTGTAAAATAGGAAGAT
Right flanking sequence: Indices 172139 -- 172638
ATCCCTTTGCTCTTAGCAGGATTCCTTCTTAGCTTAGCTGTCTTCCTGTATGGAATTCGACTTCC
CGGGACTCTGCTTTTGCTGTTAGCTTCTTCAGCACACTCTGACCCAAAAGTTTGAGTCGTTTCTT
CCTGCTCAACCTTAGTTTGATACCCATGCAGAACTTGAGACTTTCCTTGTGATCAGCACACCCAA
TGATTTGTCAAGCCTGAAAAGTGCCTTGGAAAGACTAGTAGCACACCCCCGCCAAGCTACATAAG
AGTGAGGGGATTTTCGATATGGTGTTCCTTCCAAGATTCTGGAATGTAACTAGCAGCTCCCATTT
CTCGCAGTCCAAGACTGTGCCGGTGTCCCTGTCAGCTAGAACTGAGACTTTCTTTCGGGGCTTAC
CCAAAATGGATTTCCCTGGGTTAGCTATCTAAGGGTCTCTCTCCTTACTGACTGGAGCGTTCCTT
TGCTTGACTTTCGGAAACATTCCTGTGAGAACTCTATGTATCTGT
Found at i:175413 original size:21 final size:21
Alignment explanation
Indices: 175387--175428 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
175377 TAGTGGTCGG
175387 CCTTCCTACCGGAATGCCTCC
1 CCTTCCTACCGGAATGCCTCC
175408 CCTTCCTACCGGAATGCCTCC
1 CCTTCCTACCGGAATGCCTCC
175429 TTTGTCTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.48, G:0.14, T:0.24
Consensus pattern (21 bp):
CCTTCCTACCGGAATGCCTCC
Left flanking sequence: Indices 174887 -- 175386
AGAATCTTATGTCAAAAGGACCAAGGATGATCTTTTCGGAAAGGAGGAGTAGGAGGAGTCAGACG
GAATCAAATGATTACGAGATAGACAATGAGACCAGGGAGAGCAAGAGCACTTAGACAATTCACTT
TGAGTACAGGAAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGT
GGCTCGAAGAGATTGCTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTATGGGCATTGTAGA
GAGTATAGAATATGACCCTAATCGTTCTTCTCAAATCGCTCCAGTACGATGGATCAAAGAAGGGG
GCTTCCAGAAAAAAATGAACACGATCGAGGAGTTCGCTCCGCCGCGCAAGATCCTCGAACCTACC
ACGAACACCATCAGCGGCCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATAAAAGAAAGGT
AGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGG
Right flanking sequence: Indices 175429 -- 175928
TTTGTCTTCGTCTAAGAGCGCCTTTGCTAGTAAGGGCGCAGGAAGCACAAAAACTTTAGTGAAGG
ACGTCTTCTTCTCTGCCTTCTCCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCT
AGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAAT
GAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATA
GCATTCTCTGGGCACATAGGATCAAAGGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAA
GATACTTTAGGGCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAGGTAG
CTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGA
AGGATGGAGCGTGCAAAGTCGATCGTGCACCTGTCGTGTGACCCG
Found at i:198652 original size:10 final size:10
Alignment explanation
Indices: 198637--198680 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
198627 CTCCGTCAAA
198637 GGAGGCTGCG
1 GGAGGCTGCG
*
198647 GGAGGCTAC-
1 GGAGGCTGCG
198656 GG-GGCTGCG
1 GGAGGCTGCG
198665 GGAGGCTGCG
1 GGAGGCTGCG
198675 GG-GGCT
1 GGAGGCT
198681 ACTTCGCTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 5 0.17
9 8 0.27
10 17 0.57
ACGTcount: A:0.09, C:0.20, G:0.59, T:0.11
Consensus pattern (10 bp):
GGAGGCTGCG
Left flanking sequence: Indices 198137 -- 198636
CTAGAAACTTTGGCAAAGTAGTAAAGAAGAATGGACAAAGTAGGAAAAACCCTTTTACACAGAAC
ACAACAACAAATCGTGATCGTGTGTCAAAGAAGGGAGAACAACAGTGTAGGGATATGGCAAAGCT
GAGCACTGCCCTTTTTTAGAGAAGAGACTTCAAATGTTTTTAATGCAAAGGTTGCTTCGCTAGGG
GCACACAAAAGCTGAATGTGTGAATACTCCCTTATTGGTTTGCTTGGAGCGAGAGCGAAACAGAC
GAGGATGATGATGCAGAGGAAGTCTCTGGATTCGTAGCATTTGTGATAAAGATGAGACGCTTCAT
TCGGACAATTGCTTTGCTAGTGAAACAAATTTGCTGCTTTACTCAAGCCCACACCCTCAAGGGGT
TACTTCGTCACCTCCGTCAAACCCGCGTCAAAGCCCCTCGTCAAAGACCTACGTCAAAGTAGGTT
GCTTCGCTAGGGTTGCTTCGCCACCTCCGTCAAACCTCCGTCAAA
Right flanking sequence: Indices 198681 -- 199180
ACTTCGCTGGGAGTGTGCGCTTGTGCTGAAGAAAGAAAGCAGGTCCAGGTTCAAAGCGTAAAACG
GTGAAACCAAAGGCTCCTTCAACTCGAAGAAAAAGCAGGAACGGAAAGAACTTTACTTCCTGGTG
AAGCAATTTTAAGGATAGAATTCTGCCAGCTTAGGAATCTGAACATAAGCAGTAGAGCGAGGGCA
TAGATTACTCTGGTCATGCCACCCCAGCAATTCCAAGAATTAATGCAAGCAAAGCATAGGAGTGT
GATTTGTCGTTTACCTTCTTTTGCTCTTAGGAATAAAGGTAAAAAGAAAAGCTGTGTGCTGGACA
GCACCTTTCCTACGTTTGAAAACGAATTGCCGGTACTCCACTTAGACTTCTGCACCTGACCTAGT
GGCTGAAGAAGGATCTCCCTCAAGTGATTTGCTGCTTCCTCCCCGACGTAGGTTTGACGGAGGTA
TCAGTCTCGTTGCTAAAGCACCTTCGGACCTCTTTTTTCGTCTAT
Found at i:198663 original size:18 final size:18
Alignment explanation
Indices: 198640--198677 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
198630 CGTCAAAGGA
198640 GGCTGCGGGAGGCTACGG
1 GGCTGCGGGAGGCTACGG
*
198658 GGCTGCGGGAGGCTGCGG
1 GGCTGCGGGAGGCTACGG
198676 GG
1 GG
198678 GCTACTTCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.21, G:0.61, T:0.11
Consensus pattern (18 bp):
GGCTGCGGGAGGCTACGG
Left flanking sequence: Indices 198140 -- 198639
GAAACTTTGGCAAAGTAGTAAAGAAGAATGGACAAAGTAGGAAAAACCCTTTTACACAGAACACA
ACAACAAATCGTGATCGTGTGTCAAAGAAGGGAGAACAACAGTGTAGGGATATGGCAAAGCTGAG
CACTGCCCTTTTTTAGAGAAGAGACTTCAAATGTTTTTAATGCAAAGGTTGCTTCGCTAGGGGCA
CACAAAAGCTGAATGTGTGAATACTCCCTTATTGGTTTGCTTGGAGCGAGAGCGAAACAGACGAG
GATGATGATGCAGAGGAAGTCTCTGGATTCGTAGCATTTGTGATAAAGATGAGACGCTTCATTCG
GACAATTGCTTTGCTAGTGAAACAAATTTGCTGCTTTACTCAAGCCCACACCCTCAAGGGGTTAC
TTCGTCACCTCCGTCAAACCCGCGTCAAAGCCCCTCGTCAAAGACCTACGTCAAAGTAGGTTGCT
TCGCTAGGGTTGCTTCGCCACCTCCGTCAAACCTCCGTCAAAGGA
Right flanking sequence: Indices 198678 -- 199177
GCTACTTCGCTGGGAGTGTGCGCTTGTGCTGAAGAAAGAAAGCAGGTCCAGGTTCAAAGCGTAAA
ACGGTGAAACCAAAGGCTCCTTCAACTCGAAGAAAAAGCAGGAACGGAAAGAACTTTACTTCCTG
GTGAAGCAATTTTAAGGATAGAATTCTGCCAGCTTAGGAATCTGAACATAAGCAGTAGAGCGAGG
GCATAGATTACTCTGGTCATGCCACCCCAGCAATTCCAAGAATTAATGCAAGCAAAGCATAGGAG
TGTGATTTGTCGTTTACCTTCTTTTGCTCTTAGGAATAAAGGTAAAAAGAAAAGCTGTGTGCTGG
ACAGCACCTTTCCTACGTTTGAAAACGAATTGCCGGTACTCCACTTAGACTTCTGCACCTGACCT
AGTGGCTGAAGAAGGATCTCCCTCAAGTGATTTGCTGCTTCCTCCCCGACGTAGGTTTGACGGAG
GTATCAGTCTCGTTGCTAAAGCACCTTCGGACCTCTTTTTTCGTC
Found at i:200798 original size:12 final size:12
Alignment explanation
Indices: 200781--200806 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
200771 GTTTCGTAGG
200781 TTTTCTTCTACT
1 TTTTCTTCTACT
200793 TTTTCTTCTACT
1 TTTTCTTCTACT
200805 TT
1 TT
200807 AGGGTTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTCTTCTACT
Left flanking sequence: Indices 200281 -- 200780
TCGATCTCGGTGTGGGTGGCTTAACGAGATGTTAGGGCTAATGTTGGTATGTAGTGATGTGCTGT
TGAAGGTAGATACACTTTATACCTTCTTCCTGAAGCAGACGAAGCGAGCTGGAACGTACAAGGAA
AGAGAAGATGCCTCCTAATCTACTTATGGATGTCAGAGTTGATGGTCGAGCATAGGTCCATTAGC
GGATGGAAAGAAGATTCTGCTTAGCGACACTGCAGAGTCAGATCGGCCCCTACTAATGAGAAGGC
CTTGAAGGAAGTGAAGATTGAGGCTTTCAGGGTTTAGTTAAGACTTTGCCGGTGACTCTTTTCCT
CTCGCTTCGTAAAAAGAAAACTCTTCCATACTAAGATTAATGAGATTTTCCGGTATACTTCCCAG
TCGACTATGTGAACAGCACAAAGCAAAGTTTTACCCTTTAGTGTCCAATGATATCAATGGTATCT
TTCTGTTTGTTACCAAACAGGAGGGAAGCTTTATGGTTTCGTAGG
Right flanking sequence: Indices 200807 -- 201306
AGGGTTTGATAGAATCGTCCGCTATTACAGACTTTGATTATCTGTGGGGCAGTGCGTTAGACGAA
GGAAGTAGCATCTAATCTAAGGAAGATGAAGACCGGATATTAAAAGGAATATTTTACAAAGCAGA
AGCATTACAAGCATACATAAAATAGGAAGCCTACACACACCGTAGACCAGCCACACACCATTAAA
AAGGAAACTAAGAACATAGTACATAAACCAAAGACATAGAGCAAGCATACAAGACTTTGGGTCGA
TGGACTCCTTATTTTAAATTTTAGCGATATAGGAAGTTGGCGGACTCTTTTTTTAGTTTCCCGGG
GGGTCGCGGTTGAAAGCTAGAGCTACTCGACTCGCACCGCTCACAATTAACGCTTCCTTCGCCCT
TAGGAGACCAGAAATCCTTTGTTCGAGACGGCGAATGCGGTTTCGTAACTCTTGCATTTGCTGGC
CTACGAGCTCCGGGTACAAAGCTGGAGGGTGCTGCAAAAATCGGC
Found at i:201661 original size:31 final size:31
Alignment explanation
Indices: 201626--201712 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
201616 CTCACTGATA
* *
201626 AATAGGAGACAATAATAGAACGCACATCAAT
1 AATAGGAGACAATAATAGAAGGCACATCAAG
* *
201657 AATAGGAGACAATAATATAAGGCACATCAGG
1 AATAGGAGACAATAATAGAAGGCACATCAAG
201688 AATAGGAGACAATAATAGAAGGCAC
1 AATAGGAGACAATAATAGAAGGCAC
201713 TGCAAACCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.15
Consensus pattern (31 bp):
AATAGGAGACAATAATAGAAGGCACATCAAG
Left flanking sequence: Indices 201126 -- 201625
CCCGGGGGGTCGCGGTTGAAAGCTAGAGCTACTCGACTCGCACCGCTCACAATTAACGCTTCCTT
CGCCCTTAGGAGACCAGAAATCCTTTGTTCGAGACGGCGAATGCGGTTTCGTAACTCTTGCATTT
GCTGGCCTACGAGCTCCGGGTACAAAGCTGGAGGGTGCTGCAAAAATCGGCCGAGAGCATGCTCA
TAATCTCGCTTTTCCTCCTCCAGCTCTTGAAGTTGGTCTTCAATGGTTTCGAGATTAGCTGCAAT
CATATCCAGAGCCATCTTTCTTGTCGATGCCAAATACAGACTACAAGAAGCTGCTATTTATAGGC
GGGCCTCGAACTCTTTCTCATAAGTCTTAGTTACGTAACCATTAATATGTAACCCTCTTAACTAA
ATTTTAGTGCGCGGAATCATTCTACTGATATTATTGGAGTACGAATAAGAAGTTTTTCAAAAATA
AAATAAGTCTCGCCCACGTGGCTGAATTCCGATCACTCACTGATA
Right flanking sequence: Indices 201713 -- 202212
TGCAAACCCTCAACCTCTTTCTTGTGCAGGTTTATAAAGACCGTCCTTACTCGACAGCTCACCAG
TACCATGTGATCTATCCTCCTTTCATATGCTGACTATAATGAAACTTGCTTCTACGTTTCTTTTT
TTGATTGGCTGATTTAGATTCAAGTAGAAAAAAATTGCCCTCGCCCAATCCTCACTCGACAGCTC
TGCCCTGCGCTACGTGAGAATACGCTACCTTTTTCAATTCAATTTCTTCGAGGGAAACTTTCCAG
CTCACTCTGTCAGTCCACTAAAATCTAAGTGAGCACTATGACCTCAAAGTATCCAAGGGTTTTCT
TATTGATTCACAATGCTAAGGTCACGCACAAACTCTGGATCCAGAGCAGGCGGGTGCTCCCAGAA
CAACCCAAGCATTTGCTCACAGTGGAGCTTTTCGTTTTCCGCGGCTTGGATTTCTTGTGGAAGGA
TCTCCAGTCTGTTATAGATCCCCATATCATCCATCTCTCTTAACT
Found at i:202386 original size:17 final size:17
Alignment explanation
Indices: 202361--202398 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
202351 AACAACCTTA
*
202361 AATTTAGTACGCTGAAT
1 AATTAAGTACGCTGAAT
202378 AATTAAGTACGCTGAAT
1 AATTAAGTACGCTGAAT
202395 AATT
1 AATT
202399 CTCCCCTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (17 bp):
AATTAAGTACGCTGAAT
Left flanking sequence: Indices 201861 -- 202360
TTCAAGTAGAAAAAAATTGCCCTCGCCCAATCCTCACTCGACAGCTCTGCCCTGCGCTACGTGAG
AATACGCTACCTTTTTCAATTCAATTTCTTCGAGGGAAACTTTCCAGCTCACTCTGTCAGTCCAC
TAAAATCTAAGTGAGCACTATGACCTCAAAGTATCCAAGGGTTTTCTTATTGATTCACAATGCTA
AGGTCACGCACAAACTCTGGATCCAGAGCAGGCGGGTGCTCCCAGAACAACCCAAGCATTTGCTC
ACAGTGGAGCTTTTCGTTTTCCGCGGCTTGGATTTCTTGTGGAAGGATCTCCAGTCTGTTATAGA
TCCCCATATCATCCATCTCTCTTAACTTTCTTTCCGACTTCTACTTTGTCAAATAGAGAAAAGCT
TCTATTTATAGGCCCTAGCGAAGCAGCCCTTTATTATTAGTATTATTATCTTAACTTAATTAGTA
TTCTTACGTAACACGATTCCCGGAAAAAAAGATGGAACAACCTTA
Right flanking sequence: Indices 202399 -- 202898
CTCCCCTGGATAAAGGCCCCGCCCCTAAAAATCAAAGAGTCCTTTTTGGCGGGTATTGCCACGCG
GCTTAATTACGACCACTCCCTCGGGAATAAGAGGCAATAATAGAACGCACTGTATAGAGTTCCCC
CCCGCTTTTCTCGGATTTCCAAAGGCCCGTCACTCCTTACTCGACAGCTCAAAGCTGACCAGAGT
CTCCTCGTTTACCCTACGTGCACTATTTAGCTCTGCCTACTCAGATCACGCTTTTATTTGTCTAT
TTTTTATTGGCTGATTCCCAGGTACATAACTGACTTCGGCCAATCCTTACTCGACAGCTCCGTCC
TTTCTTAGGTGAGCTAAGACCGAAGCTAGCTCTCTTGAATTTCCCCGGAAAGACGGAATCTTTCC
AGCTCACTCTGTCAGTCCACTAAGACGCGTATAGAGTAAATGAGCACTAGCAATAACTTTTTCAG
TACAATAAGTCCCCTTCTCTACGACCACTTTTGTTTTTGGGCTTT
Found at i:208592 original size:11 final size:11
Alignment explanation
Indices: 208576--208605 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
208566 TAAGGAGAGG
208576 AACGAGAGTGA
1 AACGAGAGTGA
208587 AACGAGAGTGA
1 AACGAGAGTGA
208598 AACGAGAG
1 AACGAGAG
208606 GGAGGCTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.47, C:0.10, G:0.37, T:0.07
Consensus pattern (11 bp):
AACGAGAGTGA
Left flanking sequence: Indices 208076 -- 208575
GCCCTCTTTCACCGAAGAGGAAAGAAGAATCTTTCAAGCGGGCAGAGACCTAAATTTCTTAGATT
CATTCCTAAGCTTGCTTTGTCGCAGCAAGATGGATTGGATGATCAGTCCGAGAGTGCTGGAGAGA
AGAGAAAGCGGTCAAAACTTCTCTGATTCGGTCACCGAGCAGTCGGACAACCCTTCAGTAACCCA
GGATGGATGACCCGAGAGAAGATCTCGTCCACCAAGCGGGATAGCGGAGTGCGATCCTTAAGCAA
TTGGAGGTTCTCGCTCATCTCTTGGGATCCATATCATCTGTGAAAACTTTTCCTGTTACATTAGC
ATAGCTAAATTTGAATAGGATGACTCAGCGTCAGGAAAAGTAAGCCCCCCTTTGCCTTGATTGAA
TTTGGCTTCGCTGCGCTCTGAATCAATCAATAAGCTTATTGATTGGATTCATCCCATTTCATTTG
GGCGAGAGGTCCGAAGGAACAAAGGAGCTCGACTGTAAGGAGAGG
Right flanking sequence: Indices 208606 -- 209105
GGAGGCTGGGCTTATCCATGGGACTTGCCTTGGCGGTTAGACTCTCTTTTAACACATCCTCGAAT
TAGTCTCGTCGGTTGGTTGATTCTCGAAATCACCTCTTGAGAAAAAAAAAGGTCCATCAGGTTTT
GCCCTGCCATCTCCGGCGAAGCTCCATATCCGTGAGACTGGATCACTGTAATTCACGGAAGTCCA
TTTGGACCTCTCCTTTTAGTCGAGTCATTTATACCTCTCGGGAGTAGGGGCTTTGTTCTGGGGGG
GCCGACTTGCGCTGCTTTAGAAGGGAGAGAATTTCATAAAGTCACTCTCTCTATCTATCCTTAGA
AGTAGGGCGATAGAAAGTCAATATGAGATTTGCGTTGGTTTTTCCAACGAAACAAAGCATTATCA
TTCGGAAGGCTCAGTCCCAACTCGGACTTCCATGATGGGAAGAACCTCCGCACTACGGCGCTCCA
ATGAACAAGAGTTCTCCGCCTTAGTATATTTAGAAGAGTGGTCGG
Found at i:226302 original size:26 final size:27
Alignment explanation
Indices: 226254--226317 Score: 103
Period size: 26 Copynumber: 2.4 Consensus size: 27
226244 GCCCAAGCTA
226254 GGCTGAAGGCAGGACTCTATTAAGTAC
1 GGCTGAAGGCAGGACTCTATTAAGTAC
*
226281 GGCTAAAGGCA-GACTCTATTAAGTAC
1 GGCTGAAGGCAGGACTCTATTAAGTAC
*
226307 GACTGAAGGCA
1 GGCTGAAGGCA
226318 AACCAAGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 24 0.71
27 10 0.29
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (27 bp):
GGCTGAAGGCAGGACTCTATTAAGTAC
Left flanking sequence: Indices 225754 -- 226253
TGGAACGGGTTCCATAGTCTACGAGTCCTTGTGCCCGGGGGACACAAAGAACTTCTTTCGGGATC
CCAGTGCGAGTCACATCAATCAGCTTTCTAACAACCACTCGTACTATTTTCACACAAAAGATCCG
CCATTGATCACTTTTCGGTCACAATACAGACATTTAGCAACAGGGGAGATTAGAGACTATCGAAG
TGAGCCCGACCTAGGCTGAAACCAGCAGCTACAACCAAGTCAGCTGAAAGCAGTAGCTATATCTA
AGCTCGGCTGAAAACAGTGACACTTCAAAAGCTAGCGTTCCCAGTTCCGATACAAGACAACCAAG
GAGGTTCAGAATTTAGACTATCGAAAGGACCTTTAGCCGCTCATACGTAACGCCTCCTCGGTTAC
GCCTTCCCTCACACGGGGCGCCACTACTGAGCTACAAACAAGCTCGGCAGAAGCAGGACTAAGTA
CGGCTGAAAGCAGGTATAAGACTTTAGACGGAGGAGCCCAAGCTA
Right flanking sequence: Indices 226318 -- 226817
AACCAAGTAAGTGCGGTTTCAAACAAAGGTGAAGGAAAGGTACGATCGGTGGACAAGGAATCGGT
TGAGATCGAAACCATATTCGTAGGACGCGTACCCAATAGCGTTTCCACAAGTGGGCTAACTCACT
CATCTTTTGGGATTGGTCTTTCTTCAATGTATAAGTGGAGTAAGGTCTTTTTCCCCACCGAAAGA
AAAGAAGGTTTCCATTCCCATTCCAGTAGTAAGAAAAGATCAGAGGCACCGTTGCCTACTTCGCG
GGATCGCCTTACGTAGAAGGACTTGTGATCCACTCTCGGCTAAGTTTCTATGGTCGGTCCTCTCT
CGATTAATAGCTAACTGGAAAGAGAATCCTCTTTTAGACTTAATTATCGATCAAGAGGGAAGTTC
CTAACGTGTTCTTAGGAACGAAGGTCTGTCGAAGGCGGGCGAACGTGTCTTTCTATGGTACGCTC
GGTACGCCTTGTTTCTATTGTTCTCCGATAGCTCTATCAGTGATT
Found at i:230673 original size:20 final size:20
Alignment explanation
Indices: 230648--230689 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
230638 TCTTCTCTTA
230648 TTCAATTCCACTTTGTTTAG
1 TTCAATTCCACTTTGTTTAG
230668 TTCAATTCCACTTTGTTTAG
1 TTCAATTCCACTTTGTTTAG
230688 TT
1 TT
230690 TAGTGATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (20 bp):
TTCAATTCCACTTTGTTTAG
Left flanking sequence: Indices 230148 -- 230647
TCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTG
GGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATT
GGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTT
AGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCCTTACGCACCCGTTCGCCA
CTTTGTTCTCAACTCTTCCCGCCTCCTGGGCGAGACAAGCTACCTTGAGCTAGGAGCCTCTTTTC
CTTCTGCCTAGCTCCCCGAGAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCT
TCTGAGCCAGGATCAAACTCTTCTTTTGACTATGATTGGGCCCTGCAGTGGTAGAACCTCGTGAA
CCGGGCGTACTACTTCCCAACCTTCTGTGGACCTTTCTTCTCTTA
Right flanking sequence: Indices 230690 -- 231189
TAGTGATAGTTAGAGGTTAGAGAGCTAGATCACTCCTCTAAGCAGCCTTCTGATTATATACGTAT
TATTCTATCAATCGATAAGCAAGGGTAGGGTTCCTGGATCGGTCTCGACCAGAAGACCGAGAGGT
ACTTTTGTCACGAGCTGGCTTAACCCATTCCCTTACCACCAAGCCTGGATAAGCAACTGAAAAGT
AAAGTAGAATCCCTGGCTTGTGTAGGCGAGCTAAACACAAATCTTTCTTTTCATTTTATATAGAT
GGAAAAGTAAGAAATCCTATTTTCCTTCGTAAGAGCACATCTTACATCGCAAACTTTCTCTTTAT
ATACCGAGGATTTGATGAAATACCATTTTAGCTCTATGGAGCCGTGGTGGAAAAGAGAATTTTCA
TTTTGTATACCGGCGATTTCTATCAAAATGGCATCAATCTCACTTTTTCAAAATAGTTGGCTGAA
GATGAAACATCTCCCTAGTTGCCTATTCACCCAGACAACCAACAC
Found at i:244519 original size:18 final size:19
Alignment explanation
Indices: 244496--244538 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
244486 CAACCTTCTT
* *
244496 GACTATGACA-AGAGTCGC
1 GACTATGAAACAGACTCGC
244514 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGACTCGC
244532 GACTATG
1 GACTATG
244539 GCAGGGCGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (19 bp):
GACTATGAAACAGACTCGC
Left flanking sequence: Indices 243996 -- 244495
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTCTT
Right flanking sequence: Indices 244539 -- 245038
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGGTCGCCAAACTACGACGAGACTTTCGCCTTTTGAAGCGCCAGTAGCGTAGGGCGACCGGGCC
AGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGA
GGCGCTACGCTGCCCTCGGCCCGATCATCCAATTCGCTCCAAGAGAGAGGCATGGTTTTGTAGTC
AAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACC
GATTCACTCTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCA
CAGGATTTCTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAAA
CCTTCCCCGATTGACAGAACGTTCCGCTACTGACACTTGAAAAAG
Found at i:267920 original size:20 final size:20
Alignment explanation
Indices: 267888--267925 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
267878 CTACTGCTCG
267888 GAAGAGAAGGACAAAGGACA
1 GAAGAGAAGGACAAAGGACA
*
267908 GAAGA-AAGAGACAGAGGA
1 GAAGAGAAG-GACAAAGGA
267926 GTACGCGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.37, T:0.00
Consensus pattern (20 bp):
GAAGAGAAGGACAAAGGACA
Left flanking sequence: Indices 267388 -- 267887
TTGGAAGTAAGGCTCGAGGGAGACTCATCTTCGGAGAATTCAATATCCAATCTATGAACTACAGA
GCGCTAAACAGACAAGCACTCCCTCATCTAATGTCTTAGTTGCCTAGTAGAGTCAGGAACTCGGA
GCCTATCACAGAAGAGCTCCCCGGGGTCCTCTCAAGCGCCGAGGGCTCGATACCCTATATGTGCT
TACCGAAGGAGATGAGCTTTATTCTCATACAAACGTGCAAACAATCAAGAAGAAAGAAGAATACG
ATTCTAACTATCTACTTACCGGTTCCCGTATAGATCCACCTTGCTTCAAAATAAAGAGTCAAAAA
CGATTATCATGAAAAAAAGAAGGATTTTCTCACTACACGAGTAAGAAGTGACTAGCCGCCTATTC
TATATCTATAAAGAGAGACGGATTTAGGCTGCCACTCTACCGAGCTAACCAGAGCAGATGAGCAT
CTCTTTCAATTGACTTACCGACTCTCCCGCTGCTGCTACTGCTCG
Right flanking sequence: Indices 267926 -- 268425
GTACGCGAAAGTAAAGAGGGAGAAGAGAGTTATTCGAGGCTACTCGACTCGATGGGGAAGGGTGA
AAGCTTCCCTGTAAAGGGAAGGGCTTGCTTGTGGCGAGCGGAACCATCTTTTTGTGAAATGCAGA
TGCAGTGGTCGATTGCCTAGAAAAAAGCCTTTTTCGAGTTACCCCAAAAGAATCTACTCCTTACT
CAAGTTCTCAGTGAAGACCAAGCAACATTTCATTGATTCAATTCATTTTTTAAGCCCTTCCTTCG
GTCCGGGGGTACCACGCAATCCGTTTAGATATATTTCAGTTGCCGCTGCACCGTGCTGACCCATT
CCTATTCAATCTAGAAATCGATAATTGAGTAAGAGAAGAAAATCAGATCTCAATCTAATCGAAGA
AGAGCCTCATTACGGAATTGGCATCGAGAAGCTAGGGCCCAAGTAGTGCCTCGCAATCTAGGTCA
GGTACATTGCGTACGATCCGCGTAGGCCGGTAAACCAATAGTGTA
Done.