123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_042883
Parameters: 2 7 7 80 10 50 500
Length:  287405

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9183--9229	12	3.9	12	86	8	69	14	10	46	27	1.78
9183--9231	24	2.0	24	92	7	82	14	10	46	28	1.77
11455--11580	29	4.3	29	100	0	252	34	25	29	11	1.90
21218--21259	18	2.4	18	84	11	52	23	14	33	28	1.94
36581--36651	29	2.4	30	95	2	126	11	29	16	42	1.83
36581--36662	29	2.7	30	88	7	121	12	26	18	42	1.85
45018--45066	17	3.1	16	88	8	73	34	16	12	36	1.86
45018--45066	15	3.1	15	91	5	71	34	16	12	36	1.86
56328--56361	15	2.3	15	100	0	68	38	14	17	29	1.90
65682--65720	19	2.1	19	90	0	60	25	15	20	38	1.92
66871--66924	18	2.9	19	73	15	58	44	3	42	9	1.54
68945--69080	29	4.7	29	100	0	272	22	28	13	35	1.92
74438--74516	34	2.3	34	97	0	149	26	20	24	29	1.99
76078--76119	18	2.3	18	91	0	66	16	23	35	23	1.95
76086--76126	18	2.3	18	100	0	82	21	21	36	19	1.95
92357--92397	19	2.2	19	86	8	57	21	24	29	24	1.99
112538--112581	18	2.4	18	88	3	61	18	27	27	27	1.98
144416--144445	15	2.0	15	100	0	60	40	20	20	20	1.92
158208--158253	21	2.2	21	100	0	92	43	19	13	23	1.86
164723--164848	63	2.0	63	100	0	252	26	33	4	34	1.78
164829--164865	17	2.2	17	100	0	74	18	35	0	45	1.50
164925--164954	15	2.0	15	100	0	60	13	40	20	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172099--172138	20	2.0	20	90	9	64	10	22	25	42	1.84
175387--175428	21	2.0	21	100	0	84	14	47	14	23	1.80
198637--198680	10	4.7	10	81	13	58	9	20	59	11	1.59
198640--198677	18	2.1	18	95	0	67	7	21	60	10	1.54
200781--200806	12	2.2	12	100	0	52	7	23	0	69	1.14
201626--201712	31	2.8	31	91	0	138	50	13	20	14	1.77
202361--202398	17	2.2	17	95	0	67	39	10	15	34	1.82
208576--208605	11	2.7	11	100	0	60	46	10	36	6	1.64
226254--226317	26	2.4	27	89	2	103	32	18	28	20	1.96
230648--230689	20	2.1	20	100	0	84	19	19	9	52	1.72
244496--244538	18	2.4	19	80	11	54	34	23	23	18	1.96
267888--267925	20	1.9	20	84	10	51	55	7	36	0	1.29

Tables:   1

The End!