Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_029855.1/NC_029855/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           415602
Total number of identified SSRs:                 53
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	44
2	7
3	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A	-	-	-	-	-	10	3	2					15
C	-	-	-	-	-	5	2						7
G	-	-	-	-	-	1	1		2				4
T	-	-	-	-	-	13	1		2	1		1	18
AT	-			2									2
TA	-	3											3
TC	-	2											2
TCC	1												1
TTA	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A/T	-	-	-	-	-	23	4	2	2	1		1	33
C/G	-	-	-	-	-	6	3		2				11
AG/CT	-	2											2
AT/AT	-	3		2									5
AAT/ATT	1												1
AGG/CCT	1												1