Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_035980
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 162175
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Found at i:12809 original size:21 final size:21
Alignment explanation
Indices: 12780--12865 Score: 127
Period size: 21 Copynumber: 4.1 Consensus size: 21
12770 AACCCTTGCC
* *
12780 TCAATCTCTTGATTTATAGAT
1 TCAATCTCTCGATTTATGGAT
* * *
12801 TTACTCTCTCGACTTATGGAT
1 TCAATCTCTCGATTTATGGAT
12822 TCAATCTCTCGATTTATGGAT
1 TCAATCTCTCGATTTATGGAT
12843 TCAATCTCTCGATTTATGGAT
1 TCAATCTCTCGATTTATGGAT
12864 TC
1 TC
12866 GTCGTATATG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (21 bp):
TCAATCTCTCGATTTATGGAT
Left flanking sequence: Indices 12280 -- 12779
ACTTACGAGGTTTCAGATACATTATCTGAAACCTTGTAGGCAAAAGGGGTAAGACTGGAAGCGGA
AAAGGAGCGCGTCTGCCGTATAATGGGAATCATTGATGGCGCTTCGAAAGATGGAGATTTGGTTA
GAGTTTTTACATATCTCATTACGAACATATATCGTCACGAGTCTCTATTTTGTTTTTCAAATAGC
CATAAAAATCAAAGGGTCCAAGGTCTGTCCGACCATCTGACCTCAGCAAAGAGGCGGAAGTACCA
CCCGCGCAGGAATAGCTAATCCAACCGGTTACGGTCCGTGAAGTCTTCTCTAACGGGCCACAAGA
TTAGATGAATGGTTAAATCCTGACGATTTTCATCCATTCATCTAATGTGGTGGTGGCCCATTCCC
ACCCATTTATCTAATATGGTGGTCGAGAACTCCTGTCGGATCTCTTACTTCGTGAACTCATATGA
TTAAATATTATTATTTGCTCCAAATTTCCGGATTCAACCCTTGCC
Right flanking sequence: Indices 12866 -- 13365
GTCGTATATGCATATATAATGATTATAATTTGCTCCCACCCAAATTTATTGATTTATGTATTATT
ATTTCCGTATACACGAAATAGAAGCCTTATGTTATCCGTGCTCCATTACGCTTCCCTCTTCCATT
ATCTCTTTACCCGGCTCGGTCTTCCGTTTCATATTATTCTTTCCCCCAAATAGCATCTCATATGC
GTTTGTGCCGACGCTGTTGCGAAAATATTTCATCTGCCGCGGGTCCGGTTCCTTATTGGACGATT
TTATTGACTCGATATAATTGGCTGCATCCACCTTGTTCCTAATGGTTTGCCCCTGGTCGAGTCCT
CCATCGAATAATACAACGCTTAAATCCGGTAGACATTCGCGGATGCTGGATGATTGCCGATGTGA
GCTGTCGCATAACCCCGATCTACGAAGTATTCCACAAATTGCTTTGTCACTACCTCGAGGGAAGC
GCAGGGGCTAGAATTAGGCCTAGAACGTATCAACTGCAAACTGCG
Found at i:31261 original size:23 final size:24
Alignment explanation
Indices: 31211--31255 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
31201 CGGAGAAGAA
31211 AAAACTGCATAATCTTTCGGTTAT
1 AAAACTGCATAATCTTTCGGTTAT
*
31235 AAAA-TGCATAATCTTTTGGTT
1 AAAACTGCATAATCTTTCGGTT
31256 TCAAAAGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (24 bp):
AAAACTGCATAATCTTTCGGTTAT
Left flanking sequence: Indices 30711 -- 31210
GTAGGATGTTCGACACCTTATCAATTAGAGTATTTCACGCAATTTTTTTTATTTCCCCATTGCGT
TGACCCACTCGAAACCGGCCGTATTGAAATCCGATTATCCGACTCGGCGGGGATCGCCAGGCCGC
CGGTCAACGACCTTTGCCGAACCTCTTTTGGCGAAGGCCAAACACATAACCTATGGTCCATTGAG
CACGGGGGGGGTATAGGTGGCACCACCTAGTGCGCAGGGAGCATATTCGGGTATCGTGCGCGGTA
AAGCCATTTCTGGCCGGGCCGGGGGACCTGGGACAAAGAAGTGTGCCCTTTGGCCCTAAGAGGTT
TGATTCGGCGATTCGCCATCGCTAGTTCGGTTCGGTCGTTTTTCGGCCGATTACGTTTCGCCTCC
TTCGGACCGACCCTACGGGCCTGTGTTTTACGTAATGTGATGTCGTATGGGGCCACGGGCCTTGT
GCCTTTTCTTTACCCGATACACTGCTCTAAATATACGGAGAAGAA
Right flanking sequence: Indices 31256 -- 31755
TCAAAAGCTGCTGAATCGGAAGATGATGCAGCGTATGCGACGAAGGCGGGGTTTTTAAAGTTGAT
GGAGAACAAGGTCCGGAGGAGGGTTTTAGGCATTTTGATGGAAAATAAGAACCTTTGGTCCTTAT
TGATTGCGGAACCCAGATAAGTGCGCCAGCCTCGGTGCATCGTGGACTTGTACTTTTTCTCGCGC
AGGACCCATACCGGTTATCGGTCGTCCAGGCGCGCATATCAGGCGTCGGAAGGGACATACGCCTC
CGTCCTCGCCGCCCCGAGGCGCTGTCTGAGCTTCTTACTCGGGCAGATTGGACCGGTACGGTTCG
TAAGAGACGACGGCCCCCCGGCCGGCCCCTGTCTGACGGTCCAACCTCTCAGGGGGCCTGTCAGC
CGCCAGTCCCCGGCCCTTCGGACGGACCCACAAAGTTTCTCGTGTTCCTTGGTCAGTTGTTCCTT
CCCGCTCCTCTGTTGTCTATTTAGCACTCTCCGCCGCGGTTGTAT
Found at i:32369 original size:13 final size:13
Alignment explanation
Indices: 32351--32376 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32341 GATATATATA
32351 TATTTATTTATTT
1 TATTTATTTATTT
32364 TATTTATTTATTT
1 TATTTATTTATTT
32377 ATCTATCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTATTTATTT
Left flanking sequence: Indices 31851 -- 32350
AGATTATGGAATGGCAAAAGTTATCCAAGCAGATATCCCGTGTGATGGGGCTTACGTCCGCTTGG
CCCCTAGTGTCAGGTCGATTAATATAAGATTAAGTTTCTCTGCCGCCCACTTGCACGCATCTCTC
AGGCCGTATTATGTGCTTCTCCCTTTGGTCGACCGACTTTTTGCCCTTCCTTTAATCGTTTCTCT
ATTCGTGGCTGACGGGTACCTAGTATTTAGCCTCATATATTGATATATTTTTATGAACAGAGCAA
TCCTTTTTCCCGTTCTGTCGCCCCTCCCCGAGTGTTTGAGAAGTGGGGGGGCCGAAAGGCGCGCA
GTGGCGCCCTTTTCTCTCGGCAAGCGGGGAGCCACCGATAATTTTCGAAGAGCGAGTATATTCGC
TTTGTTCCACCACCGCGATTTAAAAGATTGGAACATTACATATATATATATATATATATACGTGG
CAATTAATATAGAATAGTTGCTTACGGGCTAAATAGATATATATA
Right flanking sequence: Indices 32377 -- 32876
ATCTATCTCTCTATATGGTCCAGGAACTTCGATCCCCTTATACGTAAGATGAAATTATTATTACT
AGACAAGATATTAAGGATAGTAATAATTATTAGGTTCAGAATGGGAACTGATACTACTAAATACT
GAGAATTTTCGAATGACTAATTCGGTTTCCCAAGTCGGGAAACTCGACTTCAACTTTTCATAAAT
GGAACTAAAAAGGGACCTTGACATCCTAGTAAATAATCCGGTTGGAAACCTTTGTAATTACGATG
GGATATACTCATTCCTATTACATGATCCGATAGAGGGAACCTGGGATACGAGCGCTATGTCCATA
CTCGAAGCCGAGATAATAAGCTCCCTCGGATTCTCATGACTCCAACACTCCGCGAACTGAACACG
AATGCCTTTGAGCCAACAAGCCTAGTTGATTGTATGTAGAATTGCTTGTCCTTATATCTGACGTC
GAAGTTTCTCAAGGGGACATGGCAGTTACGAAGCAGATAATAGAA
Found at i:38430 original size:2 final size:2
Alignment explanation
Indices: 38423--38480 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
38413 CCGGAAAGAA
38423 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38465 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
38481 GCTGCGCCCG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 37923 -- 38422
GTCCAGCCAGATGAGCGCCGGCCAAGGCGGCGGGTTGGAAGTCAGAAGGCCCGCAGTACCCGGCT
AAACCTCCGCTTCGGGAAAGGGAAGGCACTGGAAACACCAGTAATCGGGAAGGGGCCTAGGTATC
TGCTTGGTCTAAGCGGATTTAACTCTACACAGCTTATCAAAGCAACTCTGACGGATCTCAGATTG
GCTATGACCGACACGGTACGGTATGCGGTTTGCTCCCTGTCAGCCCCTTGGATCTCTAGCTATGA
GAAAAAGCGAACAGGCGGACAAAGCGGCGGCTTGAAAGTCCTCTAGCTTCTCCAGCGAGCTATGG
GGTACGGCGCAGCACAAAATAGTTTTAATTCACTTGGTCCACCTGCCCTGGCTCCCCCGGCGAAA
CTTCCCAAGGATGCTCGAACTCTGCAAGGCGATAAGTATAAACTCTGGAATCGCTGGAAAAACGG
AGCAACCCGAAGAGCAGATCATTGGTTTTCGAGAACCGGAAAGAA
Right flanking sequence: Indices 38481 -- 38980
GCTGCGCCCGTAGTGAAAGAGGGACCAAAGTAAGTAGAGTTAGTGAGCCGTGTAATGGGCAACTA
TTTCGCACGGTTCGGAGGGCACTTCAGTAGGCCCTACATGGGCTGAAGTCCTGACCCCTATTCCT
TTTGATGATGCCAGAAGTCGTTTCGATATACGATTTTATCTCGTTTCTATTTTATTTATCATATC
CGATCCGGAAGTCACCTTTTTATTTCCCTGGGCAGTTTCTCTTAACAAGATTGGTTCGTTTGGAT
TCTGGTCTATGATGGTATTTTCACTTATTTCGACGATTGGATTTGTATATGAATGGAAAAAGGGC
GCTTTAGATCGGGAGTAACTCTTCATTCGCGAAAGCGAATGGAGTGGAAAGAAAAAATATAGGCC
CGTAGGGCTGAAGCTCTCATCGCTCTCTTTCTCCCTCTCCGGACACTTTTTTGGTCCAAAGGACA
CGAAACTTGCCGGGTATCGTGTCCTTTGGACCAAAAATAATTTTG
Found at i:43312 original size:12 final size:12
Alignment explanation
Indices: 43295--43321 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
43285 GTTGCATCTC
43295 TCGCTTCATGTT
1 TCGCTTCATGTT
43307 TCGCTTCATGTT
1 TCGCTTCATGTT
43319 TCG
1 TCG
43322 ATGGACGGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.26, G:0.19, T:0.48
Consensus pattern (12 bp):
TCGCTTCATGTT
Left flanking sequence: Indices 42795 -- 43294
TAGTATTCGATTCCAATGCAGCTTTATCGAAAGCTGCCGAAATTTCATGTCTGGGTTTTTCCCTA
GCCAATAAATAGGCAATCTCTACCTCTAATTCAGCGATATAATTGCCGTTGGGCGAACGCTGTGT
CCGTGAACTTCCGTTTATCGAAATCATTTTTACATAATGGGAAGTCTACAGCGTAACTAATAGTC
TTCGGGCGAAATTCGGAAAGGGTTGGGGTGTCAGGTAATGGTGCATCATTATCCTTTTCTCGTTC
GGTGCGTTAATTGGATCCGTAACCTTGCGCGGCAGGAACTCCTTTAGGCTCAGAACCTTTCTTAT
TTGGGCCACGAGGCTGGACTCTCTATGTCATCTAGCTCACGATAACCCGTTTGAAATTTCCTTGT
GCCAGCCATATGACAAATGTAGTAAACGAAGCTCGGTATAAGTCCCGGAGTCATACGCAAACAAC
CCTTGGCTCTACTTCCTTTTTTTCGGCACAAGTAAGTTGCATCTC
Right flanking sequence: Indices 43322 -- 43821
ATGGACGGCGTAGGAACCTACGAAAGAGCCTGTATTGAAACGGCTTCGGCCTCCTCCACGGTTTT
ACAGAACTATGGAGCTGGAGCCGGTTCGAAGGAAGCCATGTTAATTACGATGAAGTTGCGTTCTG
GCATGTTAAGGCCTGTCCCAACAACGCCAGCCGCGATATGCCACAGGTCGCCGGGCCTCACTCAC
CTTACCACCGAGAGTCATTTCATTACTACTCCCGATAGGTCCCAACCTGACAAATGGGTTTTTGC
GAGTTACATACATAATTGTCAAACATGCGGCGGGCTGATGGGAACCCCATGGCGCGGCGGCTCCG
GGAGCATGTTCTTATAACGCTATCCTAGAAAGCCTTATCCATTATATTGAACCAGTTGGAGAGGG
TCAGGATAACCTGGTAATCCAACACTTTATTTTATTTTCCTTCTATAAAAAATTTGTGTTTTTGC
TGCCCTGCCGAAACACACTTTTATCCGAGTTATAAGGTGGATCGG
Found at i:43966 original size:17 final size:17
Alignment explanation
Indices: 43944--43980 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
43934 ATAATTTGCG
43944 TATTCGTTGAGTTCCAT
1 TATTCGTTGAGTTCCAT
*
43961 TATTCGTTGAGTTTCAT
1 TATTCGTTGAGTTCCAT
43978 TAT
1 TAT
43981 CTTACCACGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (17 bp):
TATTCGTTGAGTTCCAT
Left flanking sequence: Indices 43444 -- 43943
GCGTTCTGGCATGTTAAGGCCTGTCCCAACAACGCCAGCCGCGATATGCCACAGGTCGCCGGGCC
TCACTCACCTTACCACCGAGAGTCATTTCATTACTACTCCCGATAGGTCCCAACCTGACAAATGG
GTTTTTGCGAGTTACATACATAATTGTCAAACATGCGGCGGGCTGATGGGAACCCCATGGCGCGG
CGGCTCCGGGAGCATGTTCTTATAACGCTATCCTAGAAAGCCTTATCCATTATATTGAACCAGTT
GGAGAGGGTCAGGATAACCTGGTAATCCAACACTTTATTTTATTTTCCTTCTATAAAAAATTTGT
GTTTTTGCTGCCCTGCCGAAACACACTTTTATCCGAGTTATAAGGTGGATCGGCCACACGTTCGA
ACATGTAAAACCGCAGAAGTTAATGGAACTGCGCCGCGTGCAACGCATGGCGCCTCCTCGTCGCA
GTCGGGTTGCCTTCCGCCAGCCTTCTTCGGGAGCGATAATTTGCG
Right flanking sequence: Indices 43981 -- 44480
CTTACCACGCGCTTCGTCGAAAGGTCTGTGGAACACGACACAGGGCCTGTAACCGGGACCAAGAA
TATTTGCTATTTAATATGTCGCGGGTAAATTCGGCATTTGGATTCGGGAATCATCTTGACTTGGC
TGATTCAATATACGTTCGAAAATTTTGTCCGGACTCACAGGCATTGTACGGGGTTTGCACTGGGG
AGCCAAGTAGTGCTTGGCTTTGATTAACTAAAATTTGCTTGACATATGATGTTGAGCTGAGCTCG
ACTTTGTTATCTTCAAGCTTCAATTTGTACGTGCACTTCGGATACCCCGCGTGCAGCGTTTGAAC
AGGGTTTTGGTAGTGATAGATGAAGAAGACCTCACCCTCGGTTTTCCGAAACCGGGGGGGAAATC
ACATCAGCGAGTGAGCGCGCTTGTTTGATGCCCTCCTGCATGCTCCAGTAGCAATCCCTCGCCAC
GCGCACGATCCGATTAGTTGATGTACTTCATCGACGTATATGAAA
Found at i:50923 original size:4 final size:4
Alignment explanation
Indices: 50914--50941 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
50904 AGGCGGCAGG
50914 AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA
50942 TATATGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Left flanking sequence: Indices 50414 -- 50913
ACTTCCGTATCCGTCAGTACCTTGTGGGAGCCTCACATTGTGGGCGTAAGGGCTAGTAAAAAAAG
GATGAAAAACTATTCAATGAGGCCCGCCCGAGGGGGGGGGCACTGTCACGACCAAAATGCGACGG
AAAAGCGCACATCTCAGGAAACTGGCTCGATCGGATGCGGGGAGCCGGAGGACGGGAAACTGTCA
CCTACGGTTCTGAATTGGCGGCCAGGCCCCCTGATCGACCATAACATGCTAGCAAATGTTGTCAC
CATCCCAGGTACCCAAGATATTGTGTTCGGAGAGGCAGATAGATAAGACTACTAATTGCACAGGT
AGGACCAAAAAAATCTATATTGTTTTCCAGAAACTTATCCCTATCATTTCCCGCCCTTTTTTTGT
CCGACAGTGCCCCTGGCCTCCTGTTTCGAATATAGAAATATATAGATATATCTATATATTTTGCT
TGATTGTGAGATTATCACCGATATGATGCGAATGAAGGCGGCAGG
Right flanking sequence: Indices 50942 -- 51441
TATATGTATTTAAAAATCTTCGAACCTGCCCTACAAGTCTCCACAATGCTTCCCTTCGGCAGCCT
TATGAATTGCCAAAAAGCAAGCACAGGAGAGCTCCAAAAAACATGGCCGGTTATCTATCAATAAA
TAGATGAACCTGAAAAACGGCCTGTAGGGGATAGAAAGAGAAAAAAAAATATATATATATTTTTT
TTGCCCCCGCGCCGTTGCGAAAGTTCGGCAACGTCAGTAAAATCTTTTTTTTGACACTTGTTCGA
AGGACACTAGACTCGGGTACGTCCTTCTTCCTATAGTCTCGTGCCCTTTGGTCCAACGGGTTCGG
CCCCCCCCCCAGCAGGGGGGGCGGGCTCGACCCGAACCCTTCAGGTCCTTTTTTCGTAAAGCCGT
TCCCTGTCTGAACGTGTTTACGCACCTTCGGACCCAGGCACGTAGTGCGCGGGGAGCGTGTTCTG
GCCGGTATGGTGCGCGGTAGAGACATTTACGGCCTTCGGCGCTTA
Found at i:63170 original size:27 final size:27
Alignment explanation
Indices: 63140--63195 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
63130 ATAAACAATC
* * *
63140 ATGCAAGAAAAGCAGGGTATTACTGAT
1 ATGCAAAAAAAACACGGTATTACTGAT
* *
63167 ATGCAAAAAAAACACTGTATTACTTAT
1 ATGCAAAAAAAACACGGTATTACTGAT
63194 AT
1 AT
63196 TCAATCAACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (27 bp):
ATGCAAAAAAAACACGGTATTACTGAT
Left flanking sequence: Indices 62640 -- 63139
AGGGAAAAAAAAATAAATCATGTCATATATTTTAGGAACCAATCTGAATTCCAATAAACAGGTGA
AAATTGCCTTAACTCGAATCTTCGGAATTGGGCCCAAAAAGGCAATTCAAGTTTGTGATCGATTA
GGCCTCAGCGATAACATTAAGGTTAATAAGTTAACTAAATATCAATTTGACCAAATTCTGGAAAT
AATAAGTCAAAATTATTTAGTCGATTCGGAATTGGAGAGAGTCATTCAGAGGGACATCAAACGAT
TAATTAGTATTGGTTGTTATCGCGGGTTTCGCCATAATGCAGGATTGCCCTTACGCGGCCAACGG
ACTCATACTAATGCTAAGACTTCTCGCAAATTTAGATACATTTCGATCAGAAGTTGAGAAAAGTT
TTTTTCCAGTTCGTACAAAATATCTTTGTAATTAGTGAACGGATTGGATGGATCATAAAAAAACG
AAATCGATGATATCGAGCAACACCAAAAACATTCAATAAACAATC
Right flanking sequence: Indices 63196 -- 63695
TCAATCAACTTTTGGTAATACGATTATTACTCTAACGGATCATGACGGAAATACAAAAACTTGGT
CCTCCTCGGGTTCAGTGGGGTTTAAGGGATCTCGTCGCTCAACCAATTATGCTGCTCAAGCAACC
GCAGAAAATGCCGCGCGAGCTGCCATTCAACTTGGATTTAAGTTTGTTGAAGTGAGAATCAAAGG
ATTGGGTTATGGAAAGGAATCTTCGCTACGTGGTTCAAAACTAGGAGGTCTTATTATTACCAAAA
TTCGCGATGTAACCCCAGCGCCACATAATGGATGCCGACCCCCTAAAAAACGTCGTGTTTAAATA
TCATCATAAAGTGCTATGTCATCATAAAATGGTAAATTGAGGTTCAAGAGTAGAAAAAATTTTTT
TAGGGTCCGAGGGAGACTTCTTTGGGATACTTCTTTGGCTTCACGGGGCGGGGCTTAACCCGTCC
CTCGTAAAGGCGAAGAAGGAGATCTACAAGCCATGTCTGGCCCTC
Found at i:72138 original size:2 final size:2
Alignment explanation
Indices: 72125--72158 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
72115 GAAAGAACAA
*
72125 AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72159 TTATCCACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 71625 -- 72124
TTCCCTACTCGGCACAGGGGAAGGGGCTTAAGCGTCTGCTATATTTCAGCAGATCGGATTCAACC
AAGTCCTCATCAAATAAGGCTCCCAGGGACCCCGCCGGACGGGTCGATACACGGAAAAAGAATAT
TTGGGCTGACGCGGATCTTTGGATTTTTGGATTTTGGGAAAAAAATACGCTACGCGCCTCGTTTC
GTAAATGCACCATGTTCGGCGGGGTCTCAAGGACGAGGGGGGCTCATATAAGAGAATGCTTGGTT
TTATTCCTTCCCACCCACTAGAATCTCACATGAGCGCTATAGTGAGAAAGCAAGTTACTTCATGT
AACTCACGCCACTTGTAGGCCCACATAGGTCACTGAAAAAACAAGCCAAGACCTTGCGACAGAAG
CAAATCCAAAGTAAGGTTGAATCGGAGAGCCGTATGATGGGCGACCATCTCGTACGGTTCGGAGA
GGGCTCGAGTACCAATGCATTCAATATGTGTCTGGGAAAGAACAA
Right flanking sequence: Indices 72159 -- 72658
TTATCCACTCTATTCAATTGCATGAAGGGTTAAGCACAAAACATGTGCTTCGCCTCCAGTTCTCA
AATACGAAGTATAGTTGGGAGAGGCAGGATTCGAACCTACGTAGAAAACCTTCAGCAGATTTACA
GTCTGTCGCTTTTAACCACTCGGCCACTCTCCCTATGATAAGTAAGCTTCTATTTTCCGGCGGTG
CAACGGGACTCTGACGAAAAATGGGTCAATCCACGCGTGTACCGTTGTTCCCATGGACTAATCGA
ACAAGTAAAAGGATGTACCGTTGATATATATTATTCATTGCACACTTTACGCATCCTACAGGATT
TGAACCTGTGACCTTCAACTTAGAAGGTTGTTGCTCTATCCAACTGAGCTAAGAATGCGGCACAT
TACTAACCATTTCGCAAAAAAAAAGTGAATTCCAGAGAAGAAAGAAGCTTGCTTCTTTCTTCTCT
CCCGCTTTATTCGCATCGCGAATGGAGGCCGAAAGAGAAGAAAGG
Found at i:92970 original size:10 final size:10
Alignment explanation
Indices: 92955--93058 Score: 129
Period size: 10 Copynumber: 10.3 Consensus size: 10
92945 GCTGCAATAG
*
92955 ATATCTAGAT
1 ATATCTATAT
92965 ATATCTATAT
1 ATATCTATAT
* *
92975 ATATATCTAT
1 ATATCTATAT
92985 ATATCTATAT
1 ATATCTATAT
92995 ATATCTATAT
1 ATATCTATAT
* *
93005 GTA-CTAGAT
1 ATATCTATAT
93014 ATATCTATAT
1 ATATCTATAT
93024 ATATCTATAT
1 ATATCTATAT
93034 ATCTATCTATAT
1 A--TATCTATAT
*
93046 ATATATATAT
1 ATATCTATAT
93056 ATA
1 ATA
93059 GATATATAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
9 7 0.09
10 64 0.79
12 10 0.12
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (10 bp):
ATATCTATAT
Left flanking sequence: Indices 92455 -- 92954
GAAGCATTGCTAAATGACTAAATTTCGCTAATATGGCTAAATCCCGAGGATTTGTAGATAAATAT
ATGTAATTAATACTCCAGAAGCCTCATCGCTAATGACACCTTCGCTAAATGACGCATATTTACCT
AATATGACCAAACCCGTTGGGGATCTGTAGTATAATACGGAGAGGAATACCCCTTAATTAATATG
TAATTAAAGGGTCGGGAAAGGAATATATAATAGGAATCTATATGGGATATGGAAGAATTCCATAT
AATTGGGAAGAGTTAATCAATTGAATTGGAATAAATAGAATGGATTGATAAATAAAAGAAATTCA
AATATATATATACATATTATATATTTGTGTATAACGGAGAAAATGCATAAATCAAATAGATTCTA
TTATTTATAGGAGAGACTATTAAATTCATGTTTATTCTTTCTTCGCCCATCTCCCGAAAGAAAAT
GAGCTACTATTTTTCTTATTCGAGAGAGACGATGAGCTGCAATAG
Right flanking sequence: Indices 93059 -- 93558
GATATATAATTTATGGGTCAGGGGAGGAGATAGCCTTGACCTCCAACCTCCGAAGATACTAAGGA
CCTGGATCTTCCCTGGGTTACCACGTTCTTGAGATCTGTTACATAGGCCCCTAGTTTTCCCTTGG
GAACGTCCAGAGACTTTCATCGTGGAAGTGGCATAGGAACTCCGGGCGGGGATCATGGCACTTCT
ACTAGAACCTTAGGTACGCTTTCGCTAGGAGCTCGAACTGGACTGAAGATAGGAAGCATAGATCG
AGGGGCACAAGGGAACTCTTTTTTCGGTCACGCGGTACGTACCGCCTGTAGGTCCCGTAAGCATC
TCGTCTTTATGGGGTTTGTAAACGGTGTCCGCTACATTCCGAAGATCAAGAATTATATCTGGTTG
TTGGGTGCGGGGCGGGGGACTCGGTTCTGTCGGCTACCACAAAACCGGGAAACTGTCCGACAAAA
CAAAGGGCACTTACGACCAACTCTGCCTCGGAATACCTTTCAGTA
Found at i:92979 original size:4 final size:4
Alignment explanation
Indices: 92963--93066 Score: 100
Period size: 4 Copynumber: 25.8 Consensus size: 4
92953 AGATATCTAG
* * * * * *
92963 ATAT ATCT ATAT ATAT ATCT ATAT ATCT ATAT ATAT CTAT ATGT ACTAG
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT A-TAT
* * * * *
93012 ATAT ATCT ATAT ATAT CTAT ATAT CTAT CTAT ATAT ATAT ATAT ATAG
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
93060 ATAT ATA
1 ATAT ATA
93067 ATTTATGGGT
Statistics
Matches: 79, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
4 77 0.97
5 2 0.03
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (4 bp):
ATAT
Left flanking sequence: Indices 92463 -- 92962
GCTAAATGACTAAATTTCGCTAATATGGCTAAATCCCGAGGATTTGTAGATAAATATATGTAATT
AATACTCCAGAAGCCTCATCGCTAATGACACCTTCGCTAAATGACGCATATTTACCTAATATGAC
CAAACCCGTTGGGGATCTGTAGTATAATACGGAGAGGAATACCCCTTAATTAATATGTAATTAAA
GGGTCGGGAAAGGAATATATAATAGGAATCTATATGGGATATGGAAGAATTCCATATAATTGGGA
AGAGTTAATCAATTGAATTGGAATAAATAGAATGGATTGATAAATAAAAGAAATTCAAATATATA
TATACATATTATATATTTGTGTATAACGGAGAAAATGCATAAATCAAATAGATTCTATTATTTAT
AGGAGAGACTATTAAATTCATGTTTATTCTTTCTTCGCCCATCTCCCGAAAGAAAATGAGCTACT
ATTTTTCTTATTCGAGAGAGACGATGAGCTGCAATAGATATCTAG
Right flanking sequence: Indices 93067 -- 93566
ATTTATGGGTCAGGGGAGGAGATAGCCTTGACCTCCAACCTCCGAAGATACTAAGGACCTGGATC
TTCCCTGGGTTACCACGTTCTTGAGATCTGTTACATAGGCCCCTAGTTTTCCCTTGGGAACGTCC
AGAGACTTTCATCGTGGAAGTGGCATAGGAACTCCGGGCGGGGATCATGGCACTTCTACTAGAAC
CTTAGGTACGCTTTCGCTAGGAGCTCGAACTGGACTGAAGATAGGAAGCATAGATCGAGGGGCAC
AAGGGAACTCTTTTTTCGGTCACGCGGTACGTACCGCCTGTAGGTCCCGTAAGCATCTCGTCTTT
ATGGGGTTTGTAAACGGTGTCCGCTACATTCCGAAGATCAAGAATTATATCTGGTTGTTGGGTGC
GGGGCGGGGGACTCGGTTCTGTCGGCTACCACAAAACCGGGAAACTGTCCGACAAAACAAAGGGC
ACTTACGACCAACTCTGCCTCGGAATACCTTTCAGTAACCTGTGG
Found at i:110753 original size:21 final size:22
Alignment explanation
Indices: 110721--110762 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
110711 TTAGAGTAAG
110721 AAAAACCACTAC-AAAGAAACA
1 AAAAACCACTACTAAAGAAACA
*
110742 AAAAATCC-CTACTACAGAAAC
1 AAAAA-CCACTACTAAAGAAAC
110763 GTATGAGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.60, C:0.26, G:0.05, T:0.10
Consensus pattern (22 bp):
AAAAACCACTACTAAAGAAACA
Left flanking sequence: Indices 110221 -- 110720
AAATAAACTTGCCGTATTATCTCCGCGAAAGAGACAAGAGCCTATGAACTCTGTATCAGAGTCTT
ATTCCGGTATAAGTGCGAATTGAAACCGAGTGTTTAACCATTCATTATTTCGCTATTCCCGATAT
TATAGCGACGGAGGCCCTTGATCCAATCCAGCGAGTTTTCTGTTATGTTTGTTTCTTCGGTGAAA
ATGAAAGAAAGGGGGAGGGGTAGACGCCAGCCTAACCCAGGAGGGCCTGGTGGCTCCTCGGTCAA
GTCCCTAACTTTCAGGGCGGGCTCCGCCCTATAAGGACTAGGTCTGTATAGGGCGGAGCGGATCG
GTGCTTAAGTAAGCTGCACAAATTGCTGAGACGTCTAAATGCTTTCCTTGATAGCTGGAAGTTCT
TCAAAAGTATGAAATGCCGGAGGGCTTGGGACCATCCATTCAAGTGTCGTTGAATTCTGTTCAAC
AGCCCAAGGACTTGGAGCACACTTGTTTTCACTAGTTAGAGTAAG
Right flanking sequence: Indices 110763 -- 111262
GTATGAGCCAAAACTACTAAAGGCATTCCATCCAGCGTAAGCATCTGGATAATCAGGAATGCGAC
GTGGCATACCCGCAAGCGGTTTTTTCCTTATTTATCAAATGTTAATGGATTGTGACTAAATATTT
TTCTTTTGTAAACTTCTTCATCTGGAATTAGTCCTTCAGACGTTTCGGTGTGTTTAAATCCCAAT
GTTGAATCAGTTATTTTATTGGTATTAAGAACTGGTTCATAGAGATCGAAATAGTACTGTTCCCG
AGCTAAATAATCCTTTTCATTCAGTAATAGTACCTGTTGAACCACCCACATGACTCAATAATAAC
TAAAATTGTCATGACCATATTTCCAACTGGAATTATAAATATATCTGTTATCGGATAATTTGGAA
GGGTGATAGTATTCAGCAAGTCTATCGCTTAATTTATAACCACTACCTACATATTGTTTCCCATT
AACTAAATTATGCCAAAGATAGATTCCAGTTTCCGTTAGATAATC
Found at i:125832 original size:24 final size:24
Alignment explanation
Indices: 125800--125846 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
125790 TCATTGCCTT
* *
125800 TTATTTATCTATGATGATTCATCA
1 TTATTTATCTACGATAATTCATCA
125824 TTATTTATCTACGATAATTCATC
1 TTATTTATCTACGATAATTCATC
125847 CAGATTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.49
Consensus pattern (24 bp):
TTATTTATCTACGATAATTCATCA
Left flanking sequence: Indices 125300 -- 125799
ATATAAACAGTGAAGAAATAACACACTTGATTTTCGGTGAGCAATTATTATATAATGATACGTAA
AAGGTAATATAATAAATACCATAATACGTGATACAAAAAATGATATAAAGCACGCATAACCGAAC
GAATTGTGTCAGATACGTAAAGTGATTTAGTTGAGTCCGAAGATGTAAGACGTTAGTTCTACCTA
ACATTTTTTTTCTACCTGCAAGAGAAATGTAAAAAGTTGGAATATAAGGTACTTCTATATAATTT
TTGGAAATATGGACTAAAGCCCTGCCGGGCGGGAGAGGAGATCGGAAAAGTTATATCTAGAGCCG
GACCTCGTGTTTCGTGGGTCGCTCCCTTCTCGCCCATTTTTTTGTTTTCTCACCCGTTTTTGGCG
GGAGTCGGATTCGAACCCACAACATTCAGATTATGAGCCTGACGAGTTACCAATTACTCTATCCC
GCGAACGGCCAACGAAAAAAGAGATATATTTTTGTTCATTGCCTT
Right flanking sequence: Indices 125847 -- 126346
CAGATTTTCTATTAGGAATTAGACTAGATTCGAACCAGATTTGTCTAGGTTCAAAAGGAAAAAGG
GGCGCGCCGCAGCCCGCGCTAGCCCACTGGGTTAAAATGACGGATACAATTTTGGTGTTCACCCA
ACTAAAGCGATTGGCTGGAGACAAAACCACGGTAGCTTCCCTACCCGCGCACAGGTCATGAATTA
GGGGTGTTATGAAGAAGGCAGGTAGATTACCCACCCTAGGCAACAACGGGCCCGCCGGTAACATA
ATGAAAAAGTACACAGGCACTACGTGCTTCTGGAACATACTTCTTTTAGTTTATGTCCGGAGCGA
TAATTTTTCATGGAATACGGGAAGCGATAAGGAAGCAGGAAAGTTTATAGAGGGGGTTGAGCTAC
GGGTTTTGAACCAACCGTAGCTCCACCTCGTTAGTAGGAGTCTGTGACCCCTAAACCAGCTTGCC
GAGAAGACCTTACACAAAGATACATTGAGGAGTTGCTGTCCTCCC
Found at i:126471 original size:15 final size:15
Alignment explanation
Indices: 126451--126481 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
126441 TCCTTCAGAG
126451 AATTATATATAAATA
1 AATTATATATAAATA
126466 AATTATATATAAATA
1 AATTATATATAAATA
126481 A
1 A
126482 TGAAACCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATATATAAATA
Left flanking sequence: Indices 125951 -- 126450
ACGGATACAATTTTGGTGTTCACCCAACTAAAGCGATTGGCTGGAGACAAAACCACGGTAGCTTC
CCTACCCGCGCACAGGTCATGAATTAGGGGTGTTATGAAGAAGGCAGGTAGATTACCCACCCTAG
GCAACAACGGGCCCGCCGGTAACATAATGAAAAAGTACACAGGCACTACGTGCTTCTGGAACATA
CTTCTTTTAGTTTATGTCCGGAGCGATAATTTTTCATGGAATACGGGAAGCGATAAGGAAGCAGG
AAAGTTTATAGAGGGGGTTGAGCTACGGGTTTTGAACCAACCGTAGCTCCACCTCGTTAGTAGGA
GTCTGTGACCCCTAAACCAGCTTGCCGAGAAGACCTTACACAAAGATACATTGAGGAGTTGCTGT
CCTCCCCCTCTCGAGATAGGAATGGACCAACGAGGGACGGACTTCGATGATCCCGATGGCGTTTT
CGAGTAAATCCTGGCTGGAAAATATAGATCATACTTCCTTCAGAG
Right flanking sequence: Indices 126482 -- 126981
TGAAACCTTATTAACGAATTAACGAGGTTGAGCGGATAATGACTTATTCTTACAAAGGGGTTGGG
ACCGGAATTGTAACCGTAAGTAACCATTTCAACTGGGTAACGGCGCGCGTAAGGGCTCAGTCCCT
AATAAATAACCTTAGACTAAGAATTTATAAGGGATATCGTCCCGTATAGATCAGGTGTTTATGAT
ACTCTACGAGCCCCGGACCCGTATTTGAAGTGAAGGTCTTCGGTGAAGGAAATGCCTTCGTTGAA
GGAAGCCTGGAAGCCGGGAGTATTCGGTTATGTTCGTAAGGAATTTCCCCAAGCACAACAAAGGT
TTTGGAGATTTATATAATTAGCCAGCTTTAGATATTGCAATCCAATCCTCTCTTTTCCGAGGAGG
GAATAAAGCTATTATGATTCGAGGAATTCTTGGAGTTGATAGGAAAGGTCTAGCCATTTCCATCA
ATGAGTTGAAGGAGTTGCCATAGGTTACTGAAAGGTATTTCGAGG
Found at i:138543 original size:22 final size:22
Alignment explanation
Indices: 138518--138561 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
138508 GAGCCCCGAT
138518 AATAAACATAGGCTACAATAAG
1 AATAAACATAGGCTACAATAAG
*
138540 AATAAACATAGGCTATAATAAG
1 AATAAACATAGGCTACAATAAG
138562 CCCCTCGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.14, T:0.20
Consensus pattern (22 bp):
AATAAACATAGGCTACAATAAG
Left flanking sequence: Indices 138018 -- 138517
CGAACATATTCCGAATCGAGACAGAAACTTCTAATATATTTTTCATGGGTCCATCGTTGGTTGCA
CCGATCGGCTTCGCTATTCCTCCAAGTCACTTTACTGTAATCTGTTAACTCATCTATCACAGGCC
TCATCAAATTTACTATTAAAATATTTAACCCTATTAGTACTATAACAATATGCGTTGGTTACAAT
CTCCTTAACTAAATCTTTAGAAATTAAGGTTTGTGAAGAAGACTTCAAATTTGAATACATGAATT
TCGGTTGATAAACCGGAGGAGTATAATCCGAAAGGTTTGATTCATAAATATATTTATTAAAACCG
GTCCCTAGCAGCCTGCATATGAATCCTGAATTTTATTTGCAAGTGTACACAGATGATTTCTGTGA
GCTATGCCGTATCCTGTTCGCAGTTCCAGTGAGCTCTTAGCTGTAAGCTGCGAACATACAGCAGC
CGCGAGCGCATAACCAACTTCCTCGCGGAGAGCAGGAGCCCCGAT
Right flanking sequence: Indices 138562 -- 139061
CCCCTCGCATCGGGAAGGCACCTCCTTCGGTGCCTCTACCACTCGAATGTAGTAAATCAATTATT
TCATGGAATAATAATAGTAATATACAAAAGCATATATGGATAGAGAAAGCACAGCTTAATAATAG
AAGATACGTATATAATAAGAAAACCATAGGGCGCATAGGGTGTCACTACTAATAAATGAATTTAG
TAGTGACTTTTAATTATTTAGGAGAAATAAACGCGTTGGAATTTTTATTTAATGGGGGGGCCGCC
GGCCGTGGGCGTGAATCCACGAGCCGGCCGTATCGGCTGGCGGAGAAGCCATTTCAGGTCCATTA
CAAAGGACCTTTCTTTCGGGGAACCAAAGAAGTATCCTTTGGGCCCTTCCGATGAAACAAAAAAT
TCTTTTTTTCCCATCATATATTTTAACTCTTTCTTTCGTCATAACGCATTATTCCACCACCCATC
TCGGATCGTCAGGATGATAATTCATCTGGTTTTCGACCACAACAT
Found at i:145194 original size:21 final size:21
Alignment explanation
Indices: 145170--145212 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
145160 AAAGAATAAA
*
145170 TTTACAAAAAAATCTTTTTTT
1 TTTACAAAAAAATATTTTTTT
* *
145191 TTTACGAAAATATATTTTTTT
1 TTTACAAAAAAATATTTTTTT
145212 T
1 T
145213 GTTGCTCGCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTACAAAAAAATATTTTTTT
Left flanking sequence: Indices 144670 -- 145169
CCGATGAGAAGTGGGTAACAATGTGTTTGTCCTCCGAGGAAGCCAATCGTGGATTGGAGGTTGCC
CGAGCCAAGCCCTTGGCGTTTTTTTTCGCATATCCAGGTTCCAAGGCTCTAGTTATTAAGTCCGT
TATGGGAGCAATTAGTTGTGGACGAGATCGGAGTCTTACTTGGTTGACACCGGATATCTTGCCAG
TGCTTGAGATTTCCACACTTCGGGTGCCGTAATATATTACTAATGCGCCCAAGTATTTGGCCATC
CCGGACTCTGCGTGTAAGATTTTATGTTCGTTTATGTCCAACTTCAGTTCTTCCTGCGGGAAGTT
TTGCACGGCTTTTATAATATCCAGGGCATCTCGTTTGGTGCCTATAACACCTAAAATTATGTTAT
CCGCGTACCGTAGGTACTTAAGTCTTTCTAATCCTTCTTTCTCAGCCATTTCTGGAAGCGTCTCT
CGGCCCAAGGGGCACAAAACTTTAGGGTTTCGAAAAAAGAATAAA
Right flanking sequence: Indices 145213 -- 145712
GTTGCTCGCGGTTCATCCATTCTAGGTGTTTGATGTTTTTGATGGCCTGCCCCAATTCTGTATAG
TACTTGAAGAAGGCTTTGTATTTTGAATGGATATCAACCCTTTTCCTACTATATTCTCCCGACGC
GAGGCGCATATTCGCTACATTGTATTTGGGTATGAGTATGTCTTCGACGTAGCAATCCAACTTAT
GTAGGAAGATATTGGTACAAAGCGGGGATATTATAGAGCCCTGCGGAACGCCCTCTGTGTTGTAT
CCCGTTCGATCCGTAAGGTTATATACATCTATGTATCCTGCGTTAAGTAGCTTCCGCATAAGATC
CTGCAGTGCTTTAGATCGCAGTACTGGTCCCATCTCCTTAATAAGCAGGTCGTGATGAATCTTGT
CAAAGTCTTTCTTAATATCAATTTGTACAAGCCAAGTCGGTGCCGTCCACGAGTAACGTGGGTCT
CGCAGGGCTTCATGACAGCTTCTCCCGGGGCGGAACCCGTGGCTT
Found at i:161370 original size:22 final size:22
Alignment explanation
Indices: 161342--161385 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
161332 GCCGAACGAC
161342 ACAGTACCTAAAACCTTCTGCA
1 ACAGTACCTAAAACCTTCTGCA
161364 ACAGTACCTAAAACCTTCTGCA
1 ACAGTACCTAAAACCTTCTGCA
161386 TAGGTAGCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.09, T:0.23
Consensus pattern (22 bp):
ACAGTACCTAAAACCTTCTGCA
Left flanking sequence: Indices 160842 -- 161341
TGGAAACAACATCGGTATTTCAACAACTTCTTGGTCTTATGTTTCTACCCGGCGCATGTTTTTTG
TTTTTGGTTGAACAAGCCAACGGACAGAAGTTATCCATTAACAAACATGGTTGATGAGTTTTGAG
CGCAACAATGTTTAACGTCACACCCATTTGACGCTCTATTCGTTACATGAAAGAAAGGTGAGGAT
CTAATAGGGGGGCTACTTGGTCCACGGGGAATAACCAAGTGACGGGGCCTCACTTTGACAATCGA
GCCCGTAGGCTTGATTGGCGTAGTTCGGTGGCTTAGTTCATGACAAAAAGCTTTCTGGGTACATG
AAACACCAGGTCCCGTAAAATCTATTCTTTCTCAGCAATTTCGGCGAAGTAAATCGTAGAGCCGG
CCCGAAACCCAACAACCCCCGAAGCCAAAGAAGCACATAGTGCCTGTAGAGGCAAAGAAGTATCC
TTTCCCGAATTAGCTGGTGAACGTGTAATGCGGGAGCCGAACGAC
Right flanking sequence: Indices 161386 -- 161885
TAGGTAGCGCTGAGTTAGGCAGGGCCCAAGTCCTAGCCTGGGATAGCAATGGGCAAATTTTTCAG
TGGCTGAGACCGTACATAGTTGTACAAGGTACTATCCGTGTCTCACCATGAACCGCTCCGGACGG
CAGTTGAATCGCTAAAATTTATATAAATGGATTCACTACAGCATAATTGGAGCCACTGGGGTTGG
TTCCCAGCGCCTCGTATCATTAATCTAGTCTTTATGGTAGCCTGGCGCTACGCGAACAAAAAAAA
ATCTTTTTTTTGCTCTGCATCTTTCTAGCACTCCATGGGCAGGGCCCTAAGGGGACTTTATTTTG
TCGGACACCACAATATTGAAATACTGTCCGACAAAACAAAGGGCTAAAGCCTTTCAGGCCGAAAG
TCGGCGGCCTGATCGCAGCCTCTAAGCTCTCTGCCTTTTAAGGAATCCTCCGCAATTTCACAAAA
AACTTTAGAGTATGGCCCACGAAAAAAGATATATTTGCGAAATAT
Done.