Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_035978.1/NC_035978/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           159061
Total number of identified SSRs:                 51
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    6


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	39
2	10
3	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	9	5	1				15
C	-	-	-	-	-	1	2		1			4
G	-	-	-	-	-	5	6		2	1	1	15
T	-	-	-	-	-	3	1	1				5
AT	-	4	1				1			1		7
TA	-	1	1		1							3
TAA	1											1
TAT	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	12	6	2				20
C/G	-	-	-	-	-	6	8		3	1	1	19
AT/AT	-	5	2		1		1			1		10
AAT/ATT	2											2