Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_049892
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 219736
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Found at i:4190 original size:3 final size:3
Alignment explanation
Indices: 4182--4206 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4172 CGTGCGCCCG
4182 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
4207 AAGAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Left flanking sequence: Indices 3682 -- 4181
CTAACCTTGAACTGACCCTTCAACTGACTAGGCGCTTGGGAATTCTGAAACCTCCCCCTTTTTCT
TTTGAGACCTACTTCCTCCTTGCTTGAACCTTTGCGACGACTATGGCACCTTTTGGCTTGTACTC
CTCGAGGAACGCCTTATGCCTTAGGAAAGAGAGATGCTAGCTCTTCCTGTCTTCCAGTGGGGTAA
GCAGAAGTGATCAACGAAGACCAAAAAGCTATTATGTTATATAAAGCACAGCTGCCATTTCATTT
CCTTTGCTACCGGCTTCTTTCTTTCTTTTTGTTCAAATCAATCAAGGATCGAAGAGATCTATCTT
TCCGGCTTAGCCGAACTTCTCACCTGGTATGTCCTAGTTCTTTGTTCATGCTGCTAACTCTGAGT
TTTGTCCTACTTCTGATTTTGGTTTTCGTATCATGGATCTTGGTTCGCGCTTTATGGAATTTTCC
CCCTCTCCGTCATCCACATGATGCTAAATCTTTCTCGTGCGCCCG
Right flanking sequence: Indices 4207 -- 4706
AAGAAATAAAAGAAAGGATAAAAGAAAGGCGAAGGAGGATTTCTTGAGAAATCTTGTAGTTGAGG
AAGTGGAAAAGTATCTAGACAAATATAAAAAAAATTTCATGTCCGAGTTCCCTCCGAAGTCACCC
TTATATAGAAACGACAAGTTTCTTGAGCAAGGTGAGCGCTCAACTTCTACAGGATGCCGTATTGC
CAAATACGGCAGACCCGGCAGCTATGCAATTACTTCATTCAGTCCACAATAATTTGGTGTCCGAT
TTTCGGCTAGTGGACAGCTATACCAATAATCCTCTATACAGTTGTATAAGATTTTTTCTAAAGGA
TTATCGGTGAGCAAGAATTCAAATGTAGTTTTTAGTTTCGTTAGTTAACCTACCTTTTTCTTTTG
GTGGTGAGTTTCCTTTTTTATTTTTTTCGCTATGCGCCGCTACGCCAGCAAGGAGTGCCACGCAC
AAGCAGAGCGAAAACAAACAAAGCAGGGTATTCGTTGGGGGAAAT
Found at i:28169 original size:29 final size:29
Alignment explanation
Indices: 28135--28224 Score: 171
Period size: 29 Copynumber: 3.1 Consensus size: 29
28125 CTCGAACAGC
28135 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
28164 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
*
28193 AAAGGAGAGGTACTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
28222 AAA
1 AAA
28225 AGGCGTTCCT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (29 bp):
AAAGGAGAGGTGCTTTAGCAACTCGACTG
Left flanking sequence: Indices 27635 -- 28134
CGAATCTTCTAGCATGTCGGAAGTATACGTAAACCACTGAGAAGAGGCCTCGGTTTGGTGATTCA
CTACCTCCCCAGACGAACCCGTCACAGCATACCATAGAAAGGGCCCCAACAGGGGCAAAGCCGGA
CTCACTAGGTGGATGACTTCGATCCGTATCAAAGATCCCACGAACCCAGCGGAAAAGACCAAGAA
GAGATTGAGAATCTCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAATAAAAATAGGA
AGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTTCTGATCCTAGA
AAACGTTTGAAAAAACCTGCTACGGAACTACCGAGCAGGAGTAACAATAGTCGAACTAGATTGTT
AATAACATAATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCTTTATCAGAGAGGGGCCCCGT
TAGGGGTATTTAGTAACTCGAGCATTTCTTGTTTACTCGAACAGC
Right flanking sequence: Indices 28225 -- 28724
AGGCGTTCCTCGGAGTGACTCGAGCACTTGTCTAGAGAGGTGCTTTAGCAACTCGACTGAAAGGA
GAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATTATGTTA
CCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTTTTTTAT
ATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGATTCGAAC
CTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCACTCCCC
GAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAGATATCC
CCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACGAAAGGG
ACAAAAAAAAAAAAAAAAGCCATTCTTCATATACCTCAGCTCCGA
Found at i:49124 original size:27 final size:28
Alignment explanation
Indices: 49065--49138 Score: 132
Period size: 27 Copynumber: 2.7 Consensus size: 28
49055 AAAGAGCCTA
*
49065 GCTTTCTTGGTTTGATGAGCTTATACTC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
49093 GCTTTCTTGGTTTGATGAGC-TATACAC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
49120 GCTTTCTTGGTTTGATGAG
1 GCTTTCTTGGTTTGATGAG
49139 TGAGTAACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (28 bp):
GCTTTCTTGGTTTGATGAGCTTATACAC
Left flanking sequence: Indices 48565 -- 49064
TTACCCTTTCTTTCTATGAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGAACCTTGCTGCTTA
CTTGCTATATTCCCGCGTTCTTGCATGGCTCGCGCGCAACCCCGCCCTGCTTCTCCCTTCCCCCT
TACCGTCCAAAACTCAGAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACC
GGCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACG
AGCTGACGACTTGTGGGGTAGCAATCCAAAACAAAATGACGAGTAGTGGGGTCCTGAGCTAAGCC
TTGGCTAAACCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACT
GCAATAATTCTTGCTAAGAAGAACGCCCATGTTGTGGCAATTCCACCCAGAAGGTAATGGGTTAG
CTTGAAACAGATAAGCTTGCCCAACTGCAACAAAGAAAGAGCCTA
Right flanking sequence: Indices 49139 -- 49638
TGAGTAACAACTTCTGAGTTGACTTGGAAGAAACCATTGTGGATTGTTGTAGTTCCGTGCTAATT
AACAGGTTCTTTGCCTTTATTTAAAACAGGTTTGGCGTTGCATTCATCTAGGCTGTAGCCTCTCA
TACGACAAGAAGGATTTAGATCGGGGGATTTTCGTAAATGATTCGTTGCCAGCGCCCAAACTTTC
CCATCCCCAGCCAAATACGATTGGGCATATCCTTCAAGAGATCAACCAATACGCATACTGCGCAA
CACTAGGGTGGTCGTAGATCAGCTAACTGGGGCGTCCATTGGTGGAACTCAGCCGGAACCTCAAT
ACTGTGTAGTGCCCGAAGAATTACTACGTAATTTTGTCTAGTTTAGTGATAGCAGTAGGTCGGTT
CGCTGTGGCTCTAATGCCGGCGATGAAGCAAACAAATAGGGTGTGATAACATTCAGACCTATTTG
AGACTAAGAGGGGCTGGTTACCGGAGGTATTCCTGTCAGCCTTGT
Found at i:61905 original size:12 final size:12
Alignment explanation
Indices: 61888--61912 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61878 AGTGAATGAT
61888 TGAACTGATAGC
1 TGAACTGATAGC
61900 TGAACTGATAGC
1 TGAACTGATAGC
61912 T
1 T
61913 TCAAAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TGAACTGATAGC
Left flanking sequence: Indices 61388 -- 61887
GGGGCGAAGCCCACACCACACAGTTGTTCAATTTGAATGTCATTCTCGACTTTATCCCTTCTCTA
ATCTAATATCTAATAGGGCTGGGTGTTTGATTTCAGGCCCTTTCGAGGAGGGTATCTGATTGGTT
AATGTCAGCCCGGCTCGCATGGACTTCCGGTGTTTCTTAGTTGACAACTGCATTGAAATTAGAAG
TTCTCCAGTTACTCCTGCACAAGCAACAGCAGTTATGGATCTGATTGAGGAGCGCTAGGAAGAAT
GGATCGAACGAGAAGGATTAGAGCAAGTTCCGTTCTGGGTGAATCAAGAAAGGAAGTTCCGGGAG
TTCTGTGTCCCGAAGAGAGAAAGCTCACTAAGAACTAGCTTGGCCGTAGTTCCTCGTAGGAGATA
GACGGACCAAAGGCGTTCCTCGAGAAAGGCTGACCAATTGCAGATTCCGAAAAGAAATAATTTCA
CTGTCCTAGTTATGCGAGACGCCCTCTTCCTAGCGAGTGAATGAT
Right flanking sequence: Indices 61913 -- 62412
TCAAAAGGTGACTCTTCTCTTTCCTTTTGGTTAGCTTGCAATACAATGCGGATCAGCGAGACTTG
CTTGAATGCTTGCTAGACTTCCTTATTCTTCTTTTGAAAGCAGCTTTTACTCAGATAGCTACTTC
TGCAAGCTAGGAGAAGGAAAAGGAGCTTCTTCGGTGGATACCTCTTGGTCCTGTTTAGTCCCACC
CGTTTCTGATTCCTTTTAGTTTCTTAGTAAAAATGGGTGATGGTATTCTGCCTAAATAGTAGACA
CAGGTAATAAATAAGATAATACTAAAGATTCGAGTCATAGAATTTCTCAATTCTGACACAAGGAA
CTTATACTTATTAGATCTAATAAGTACATTAGACCTAATAGAATTATTTTGCTGTATCCAGACTA
ATACCAATCCAACCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACTACTTGTT
ACAAATAACATCTTGTTGTTGCATCGAAACATATAAATGTTGACT
Found at i:69102 original size:22 final size:22
Alignment explanation
Indices: 69074--69122 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
69064 CTCGCTACGC
69074 TCGAGATCTTTGAACCTTTCAG
1 TCGAGATCTTTGAACCTTTCAG
*
69096 TCGAGATCTTTGAACCTTTTAG
1 TCGAGATCTTTGAACCTTTCAG
69118 TCGAG
1 TCGAG
69123 TGCCTTCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
TCGAGATCTTTGAACCTTTCAG
Left flanking sequence: Indices 68574 -- 69073
AGCTAACCCCTGTCCAGTGCCTGGCAGAGCTAAGGGGCTTCAATCCTTATTCCTTATCCCCATCT
TCGCCCAGGCTAACGGGGCCTTACTTATTCAGGGGGGAGCCCCGAGAAGCACTGTTGAGAAGAAG
ATCCTAGGCCCCTCTTCATTCTCTACAGGGTTTCTTTCTTCAATATATATATAGGTGACAACGAG
CGAGGCAGAGATGGAAGAGATCAAAGACGAGAATAAGAAGCCAGTAAACTTCTTCCTTTTTGATC
ATTTTGTTTGATAGAGGGGGATAGAAAAAATGGACAAAACTGACTCGCATTTCTCATCGAACAAA
TACGAAAAAAGAATCATATTGAAAACTGAAACCTCACCTCTCCTCTCGTTTCACTCTCGAGGAAC
GCCTTACAGTCGAGCTCCTTTGTCACTCCGTGCCTCTCTAGACAAGTGCTCGAGTCATGACTCCG
AGGAACGCCTTTTCAGTCGAGTTGCTAAAGCACCTCTCGCTACGC
Right flanking sequence: Indices 69123 -- 69622
TGCCTTCGGCCCTCTCCCACCAAGGATAAGGTCTCATTAATTAGTTGATGAGGGGTCGAGTTACT
GCGTTCCTAACCCAACTCCCTCCTTCTCCGAGCTTTGTATTATAAGTGATCCGAACCTGCCCGGA
GTGAGCCTCCCATAGAGGCAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTTGGAG
AGGACTCAGCTGTTAGTTAGTATCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTATTTTATTAT
ATACGCTTAGTGAAAAGAATGTTTTTTGATACACCTAGGACATGGATTCTATATGAACCAATGGA
TCGTAATAAGTCGTTACTACTAGCAATGACTTCCTTTTTCATTACTTCATCCTTGCTATACCCCT
CTCCTTTGTTCTCAGTTACTCATCAAATGGCACTCAGTTCATATCTTTAAGTTCGATCATTGACA
AGGTTCAAAGAAAGGGTGGGCCGTCGGTTTGAATCCAATATTATG
Found at i:71541 original size:36 final size:36
Alignment explanation
Indices: 71494--71580 Score: 149
Period size: 36 Copynumber: 2.4 Consensus size: 36
71484 AAAGCCTGAA
71494 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
71530 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
* *
71566 AG-TGATGGTTGACTC
1 AGAAGAAGGTTGACTC
71581 ATGAAAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 11 0.22
36 38 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (36 bp):
AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
Left flanking sequence: Indices 70994 -- 71493
TCTTAGGAGTAGATGCCGGGGGGAGAAGGAATTCTACGACTGATTGAGCCAACAAATCCTAGCTA
GAATCTAATCTGGAAAGAACTTGGAACTCTCAACCATAGCTTTGATTTGCTTTTCTTATTGGCAG
AAGTCAAGGCGATTTTAATCTCAAAGAGGCCGATAGGACCAGTATCGGACGAGATATTGACAAAA
GGAAAATCATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTC
TTGTATGAGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCC
AAGAGGAGTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGA
CAATCTGAAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTG
AAACCAACAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAA
Right flanking sequence: Indices 71581 -- 72080
ATGAAAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCT
CTCCTTTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGTATGTTAGTGTTCAGT
ATATCATGTTAGTGTTCAGTATAGCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAA
GGCGGAAGCTGCGGGTTCGAGCCCCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAAT
CTCTCATCAGTTACGAAATATATAGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCT
CAGTCTCTAGGAATTCCTAAGCGTTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGG
AGAGCAAGCGCCCTACCCGAGTCTCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGA
TCGAAACCTAAAGCCAAGTGCATCGATCGGTTTCCTTGCGTTGGG
Found at i:71721 original size:20 final size:20
Alignment explanation
Indices: 71696--71733 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
71686 GTGCTCGAGT
71696 ATGTTAGTGTTCAGTATATC
1 ATGTTAGTGTTCAGTATATC
71716 ATGTTAGTGTTCAGTATA
1 ATGTTAGTGTTCAGTATA
71734 GCCGGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
ATGTTAGTGTTCAGTATATC
Left flanking sequence: Indices 71196 -- 71695
CATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTATG
AGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCCAAGAGGA
GTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATCTG
AAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACCAA
CAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAAAGAAGAAGGTTGACTCGGCAATCTCAA
TTTCGTATGAGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATGAGTGATGGTTGACTCATGAA
AGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCTCTCCT
TTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGT
Right flanking sequence: Indices 71734 -- 72233
GCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCC
CCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAATCTCTCATCAGTTACGAAATATAT
AGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCTCAGTCTCTAGGAATTCCTAAGCG
TTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGGAGAGCAAGCGCCCTACCCGAGTC
TCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGATCGAAACCTAAAGCCAAGTGCAT
CGATCGGTTTCCTTGCGTTGGGAGGGAGATTGAATGAACGCTTGAAAGCTAGCGGGGACTCAGAG
AGAAGAGAGCCAGGGATATCCAACCCAGGAATCGCACGCAGGCTTCTCGCCCCCTTTCTCTGACG
AGGGCGAAGCAGAGATCGAATGCTTCCAAAGCAGGGAAAAGAAGA
Found at i:88917 original size:12 final size:12
Alignment explanation
Indices: 88900--88926 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
88890 GAGGTTCCCT
88900 CTCGAGGAACGC
1 CTCGAGGAACGC
88912 CTCGAGGAACGC
1 CTCGAGGAACGC
88924 CTC
1 CTC
88927 TTCTCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11
Consensus pattern (12 bp):
CTCGAGGAACGC
Left flanking sequence: Indices 88400 -- 88899
CCATGCCCCACTATACTTTCTTCTAAGCCAGCTTTTCACTCTTTGTTTTCGTATCATCTCATTGG
ACTTATTTCAAACAAACTCGTTACACTCGCACCTGATACACGGGAACGAAGAAAACTACATGGGG
AGCACGCTTACACCTGCAAGAACTAAGGGTCCAGACCAAGCACAGACAGATAGAACCAGACATAA
AAAATCTTCCTTTGCACAATGCCTATCAGATATGGAAGGAGGATCTTTCAAGAGAAACTTCCATT
TTATTTTCTAGCTCCGAGAGCTACTTTAATGGCTTGTGCCCATAACAAGTAGTTATGACCATTCA
ACTTTACAGAGGTAATCTGCATACTGACCTGATCAGATGAAGTGTTGGAGGCGGATTTATTTGAG
TTAGAATCAGCCATGACGAATAACGTTGAGAAAGACCACCCAAGAAAGAATAAAGAAGCAACCCC
CACAACCATGGAGAATATGGGAGCAAGCCTAAGAAGAGGTTCCCT
Right flanking sequence: Indices 88927 -- 89426
TTCTCATTATATGATTTGTGTGAACACAGTAAAGTCCCACCATAAGCATTCTCTGCATCTCCACT
GCATTAAATGAAACTAAACGTCCCTTTCAACTTTGGATCAACTGCCTCAATCAGTTTCCCTTTCT
CCCAGTAGCTCCATACCAATCAACAAGCACCGTACCAGCATCATCCGACAGGCCTTTTCCCTGTA
GCTACCTCTAGCACCACTAGACCGAAGCTGTAAACATTTCTGTGATGGAACACCATAATAAACAT
ATTAAGGAGCAAGATCTCCCATTTTCCCAGCTGGTATTGTAGCTTCCCTGGTTATAGAACTATGT
TCATAGACTTCTGCCTAAATCTCCTAGCTTGGCATTGAATTCTGCATCAAGCATTATATTTCAAG
TCTTAACTAACGTCCCTATGAATCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTC
GCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGG
Found at i:116443 original size:14 final size:14
Alignment explanation
Indices: 116424--116453 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
116414 TAACAAGCGA
116424 CGGAGGCGGGTAAG
1 CGGAGGCGGGTAAG
116438 CGGAGGCGGGTAAG
1 CGGAGGCGGGTAAG
116452 CG
1 CG
116454 ACGTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.57, T:0.07
Consensus pattern (14 bp):
CGGAGGCGGGTAAG
Left flanking sequence: Indices 115924 -- 116423
CTCTTTCTCTATCTCGGTCTCGGTTTAGCGATAGGTTGCTCTCAAACGATAGCCAAGTTTGATTT
GCTGTTTTAGCCTGGGTACGTACACATACGCGTACTATAGAATCTAGATGTCTGATTGGTCTCCA
TAGCTTGATTTGCTTTCCTCCTAGCTGGATGGGTTTCTTGCTTTCTGCCTTGATTGAGAACCTCG
AATCGTTGTTATCGTTTTTAGTAGAATTGGGTTCTTAATAATAGGCATGCTGTCTCCTCTTTTGA
TTATTCCTACACGCACGAGAGGAGCAGACGGTTTTTCGTTGATGGGCAGGTGATAAGATCTGTAT
TGGATAAGTTTCTTTCACCTGTACCATGATATGCCTGATTGGCTGTTTATAGAATTGGTCCAGGA
ATGCTGTCACTCAATTACTAGGTCTTCTTCCCACGTGTACGTAAATATAAGAGAGTGAAGGCTTT
CACTAGCGCCTAACGTTTTAGCTAAGGGAAGCAGATAACAAGCGA
Right flanking sequence: Indices 116454 -- 116953
ACGTATTAATAGTTAAGCGACGGAGGTAAGCGGAGGAAGCGTAGGAATCGGTTACTCAACTGCCC
TTAGACTAGTGTAGCCCGATAGGACTCCTTTAAATGAGTCCGACGGCTAACAGCTAATACCTGCT
ATCTCGGCAACTCCTACCGATCAAGCAAGGAAGAAAGCAACTCTCGCTGGAGGGACAACTCCAGC
TCAGGCAGAGCTAACCATTGAAGAACTAACTGATAGAACTACAAGAAACCAAAGGAAGAAGGTAG
ATACTTAAGTTAACAGTCAAACAAAAGAAAGCAAATGAAGGCACAAAGAAGGAACAAAGGAACAG
ACCTTAGAGAAGAAGGAGAACAGTCACAGATAGATTCAAAGCTAAGGAGGAAACGAGTAAAGAAA
ACAGATGGCATCTTATATAGAGTATAGAGAAAGATTCTCACAATAAAAACAAGAAGGAGAATTTG
ACTCTTCAACCGGAACCCGCGCCTGTGCGCCTACCGAGCTAGCAA
Found at i:118966 original size:19 final size:19
Alignment explanation
Indices: 118942--118980 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
118932 GCCAAAGGAC
118942 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
118961 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
118980 A
1 A
118981 TTGACCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (19 bp):
AGATTTTACAAATGGTCTG
Left flanking sequence: Indices 118442 -- 118941
GTTGGAGTTGGTACTTCAACCGGTTCTTTTACAGTCCCACCTTCATAAGGAAGAACTGCCTTGAA
GGGTAAGGCAGGTCAAAAGAGTGGGCATCTTTCTTACCTATGGCTAACTCAAAAAAATCTGAGAG
GGGAGGTTGCTCTGCTCTGGATGCACCGGTCAGAACGGGGAAAGCTGCTCTTAGAGCTATCTCTT
TCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCTAGAGCGGAATATTAGGTA
GTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCTTTGACTTTTGAGAAGATA
GACCCAAGTAGCCCTTGAATGATCATCCATTATGGTTCAAAAATATCGAAAACCTTCTGTTCTGT
GGTTTCAACTGAAAAAGGGCCCAAAATGTCAATGTGAATCAGATCAAAAGGTTCATCACAAATGT
TATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGAC
Right flanking sequence: Indices 118981 -- 119480
TTGACCTTTTTATTCTTATGAGTAGGGAGTCAATCTGAAAGGATAGCAGTTTTAGAAGAAGGATG
GAGCAGAAAGATAGAAAGATCAGTTGCTGGAAATCAAATATGTAAATAGTCGAGTTATTGCATTC
CTCTCACAAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAATTATCAATTTCATAAG
AGAAGAAAGATCGTTTTTTTAAATTATCAATTTCATAAGAGAAGAAAGATCGTTTTTAGAAAAGA
AAGAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTTACG
CTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAGCTC
TGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTCCGA
TTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTA
Found at i:119176 original size:39 final size:39
Alignment explanation
Indices: 119122--119232 Score: 222
Period size: 39 Copynumber: 2.8 Consensus size: 39
119112 TCTCACAAAC
119122 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
119161 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
119200 TATCAATTTCATAAGAGAAGAAAGATCGTTTTT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTT
119233 AGAAAAGAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (39 bp):
TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
Left flanking sequence: Indices 118622 -- 119121
TTAGAGCTATCTCTTTCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCTAGA
GCGGAATATTAGGTAGTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCTTTG
ACTTTTGAGAAGATAGACCCAAGTAGCCCTTGAATGATCATCCATTATGGTTCAAAAATATCGAA
AACCTTCTGTTCTGTGGTTTCAACTGAAAAAGGGCCCAAAATGTCAATGTGAATCAGATCAAAAG
GTTCATCACAAATGTTATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGACAGATT
TTACAAATGGTCTGAGATTTTACAAATGGTCTGATTGACCTTTTTATTCTTATGAGTAGGGAGTC
AATCTGAAAGGATAGCAGTTTTAGAAGAAGGATGGAGCAGAAAGATAGAAAGATCAGTTGCTGGA
AATCAAATATGTAAATAGTCGAGTTATTGCATTCCTCTCACAAAC
Right flanking sequence: Indices 119233 -- 119732
AGAAAAGAAAGAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAG
TGGTTACGCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACT
GAGAGCTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCT
GCGTCCGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGCCCAGTCG
TGCCGAGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCTCCACTTGTCG
CGTACTTCTTTAGCTGCACCGTCATCGCCGGCCGGACAAACCCTTCCAACAAATGGGGAGTGGGC
CAAAGGAACACGACACATCCAGTGAAGAGATCCCGGACAGGGAAGTCAGAAGGTCTGCAAGCCTC
GTCTTCGCCCCTGCTTTAGCTGCACTTGGTGCGTAAGAGGGAGAC
Found at i:138215 original size:17 final size:17
Alignment explanation
Indices: 138195--138233 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
138185 CATTTCTTTC
*
138195 ATATCTCCATTCTCATA
1 ATATATCCATTCTCATA
138212 ATATATCCATTCTCATA
1 ATATATCCATTCTCATA
138229 ATATA
1 ATATA
138234 ATAGGGAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATCCATTCTCATA
Left flanking sequence: Indices 137695 -- 138194
ATAACGCTTTTCTTCCGATCTCACAGTTCCTTTGTCCCTTGTAAAGCATTCTATCTGTGGCCACG
TGCTACTGTGGAGCTTTTGAATCGACGTCAACCAGAAGAAAGAAGAGAGCCAGAGCGCCATACCC
TTCTCGGAAGGAACCCGCCCTTGGAAGAGCTACTAGGGCATCGCATCTATGCTGAAAGAGCACAA
TCCTTGATCTAGAGGGAGCCATTCCTTACCTTAGAGGAAAAGACTTAACCCAGTCCTCAGTTTCC
ACTTACAGAATAAATGAATCACTTTGCCACTCGACGAGGCAGATAGCTCCTCTGGTGCTACTATA
GCCTTTGTGGTTGCTTCGCTAGGAAGAGCAGCACTTATATTGCTTGGATTATCTATTCAGCACAA
GCACACCGCTGTGCTGTGGAAGAGTAAACGAACTACTATCGATGTGTTACCTAAGAGATTAGCCT
AAACGAGAAAAGGGAGTGTGCTGGACTGACCTTTGCATTTCTTTC
Right flanking sequence: Indices 138234 -- 138733
ATAGGGAGGCGCTGACCTTACAATTGTAAGAGTTAAATGACCGACTGACTTGAATCTGTTTGCCG
TTGGTCCTTATCTTTAAGATAATGTTAAGAGTGGTAAGGGCTATGGGTATAGAGCCTTGGCCAAG
AGGTTGATTGAGTCAGTAGACCTAACGTACGCTTAAAGAAAAAGACAGCTCTGATCACCCTTTAT
CTTTCTCGGACTCCAGTAATATGTGTGGGGCAAGTAAACGTCAGCAACGAGGACTTCTTATTGGG
CTTACTGCCTCTGCCTGTCTTAGGTACCCAAGGGGAGTCCTACTAATAGCCATGCTGAGCTGTCC
TTATCGTAGTCATCTTTTCCTATTATTGAACAGTTTCAACTTGCATGTGTTAAGCATAAGCTTAA
ATCTTTCGAAGCTCCACTGATTCATCAAAATGCATCCAAAAATCCCGGGATATTAGCACTTTTTC
AGGCTGTTTTGACCTCGTCAATCAAAAACAATATCTTACAACATT
Found at i:144514 original size:18 final size:18
Alignment explanation
Indices: 144475--144516 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
144465 CTGAGGCGTA
*
144475 TTCCA-CAAGACGGTACC
1 TTCCATCAAGAAGGTACC
144492 TTCCATCAAGAAGGT-CC
1 TTCCATCAAGAAGGTACC
144509 TATCCATC
1 T-TCCATC
144517 GTCTGGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (18 bp):
TTCCATCAAGAAGGTACC
Left flanking sequence: Indices 143975 -- 144474
GAAAGACAGAAAGCATTGTTTGATCAGCCAGAAGAAAGGCTGTTCCGAAGGTTCAGTTGCACATG
TGGTCTAAAAAAAAAAGGTTACAGGTAGTGATGAGCAGCCTGCTCCTAAAGAACGGAAGGAGACT
TGTTTCTTCTCTGCGATGTTCTTGGAAACCGCGGCTTTTGCCCGCCAGCTGCGAATCATTCATTC
AGAACCGGATGGTATTTTCAGTCCAGGTATTCTCTTTCAACCTGGGTATACTTTGTACCCGTTTG
ATACGAAATTTAGTACCTGGGCAGCTAATGAAGGGTTGAGGTTTTATGAGGCTTGGCCTGGCTTG
GTGTTTGATTCCCTCGCCATGGGCTTCGACCGTTCTTCTCAACCTCTTTATTCCGGACGTTTGGC
TCAGTCCTTAGAGGGTGCCGGAAAGCGGCGTTTGTTTGTAATCGGTAACTGGTTTAAACAACGTC
TGTTATACCCCGTGCATGTGTGGGGTATGTCTGTTCTGAGGCGTA
Right flanking sequence: Indices 144517 -- 145016
GTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGG
CCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGT
CAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTG
TGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCAT
GCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGC
TTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTG
ATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTC
GCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCA
Found at i:147065 original size:15 final size:15
Alignment explanation
Indices: 147045--147074 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
147035 ACCCTTCTTA
147045 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
147060 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
147075 CAAAGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGAAAACTGGCATC
Left flanking sequence: Indices 146545 -- 147044
CAACTGTTAGAATTTCGATCGAACAAGTATTGGCATTCTGTCAGCATTTCCCCCGCGGTCAGTGA
TAGTTAGGAAAGGAAGAAAGAAAGGGTGATACACGAGAAGCTAGGTCAGGTATATATAGCGATTG
CAGATGGTGCACTAGTTTCGTATACATAGGCCCTGGTTGGTAAGGTGATAAGATCGACACATTAT
ATGCGATCTACGTTCATAGGTTCTACCTTGAAGCTCTTCTCCTTTCCTTACTCTAACAAGTAAGC
AAATAGGAATTACCTTGTGAAGCAACGTAAATTTAGTGAGTTTTGGGAGGTTAGCCTTAACACAT
CCAAATCTTCCGAAGTCAATGCGGTAGCAGCCACTGTCCCGACCTTTTCTGTCACTCCTTCCTTT
GAAAGGAGCTTTTCGCCGTTAAACTCAGCTCTTTTTCCGGCTTTACCGATTAGATCAGTTTAGAC
CTTACCTTGGGATTGGTTTTTTTCCTTTAAGGCTGACCCTTCTTA
Right flanking sequence: Indices 147075 -- 147574
CAAAGGTCCTCAACCAGGGAGAAATCGACAAATCTAGGATAAAGTCCACTTGAATCGACCAAAGG
GGAAGGAAGTATGAAAATCCAATTCTTTGACGGAAACTAAAGGCTAACCTACAAGCTAGCCTCGT
CGAATCGACTCACTCTTTTAACCTCAAAGGGAATCTGAGAAACAAGTAGATCAAGGATTCCCATG
TTGCCTATGGTGTCTTGCGAATTCCTAGGAATGTTAGGAATGGGAGAACCAGTAATCCCAGTAAT
CCCAGGAATAGGAGGTAAGGAGATTAGTTGGTTAGGAGGGAATCCCAGCAATATTAGCAATGAGG
TGATGAGATTAGGTTTGTTTTGGTTAGGGATTAGAGGAATGGGAGAGGTAAGCCAAGTAAGGTAA
GGAGTTTTTGTTTGTAGAAAGTTCCATTTCAATCTGCCTATCTGTTTGAATCAGTTTATCCCAAG
GAAGTGTTTTACTCTTTTAATTGGTAGTTGGTTAAGGAATCCCTG
Found at i:186214 original size:34 final size:34
Alignment explanation
Indices: 186154--186221 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
186144 AAGAGTTTTC
*
186154 AAGGAGGAACCCAGCTTATCCCCTCTCAGCGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
* **
186188 AAGGAGGAACCCAGCTTCTCTTCTCTCAGAGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
186222 GAACCCCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (34 bp):
AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
Left flanking sequence: Indices 185654 -- 186153
GTACTCAGGGTACACTGAACACCACAAAAATCTCGATGAAACTCTGAGAACTAGAAGCAAGGGAA
TCAAAAAAGTCTATTCTTGACGTGAACGGCCGCTTTGTCATTAGAGTGTGAGAACCTTAAGGAGA
AAGCTTTTTGATTGATTTGTTTACTCAACTCGTAAAGGCTCATCAAACAGCGCTTTCTAGCTTTC
TTCAGGATTTAGCCTGAACCGATGCCAGAGCTCTCAGTGGTTTGTGGACTCGAACCACAGTAGGA
ATTTACAGTTCCGGCTCCCCAGCGGAGCGTAACCACTTTCTTACTCGTAAAGGCAAAGAAAAAAG
GGATCCGCCTCGAATCAAAACGTTCTTTCTTTTCTAAAAACGATCTTTCTTCTCTTATGAAATTG
ATAGTTTGTGAGAGGAATGCAATAACTCGACTGTAAGGTCCACCAGGTCCGTAGGAGAGTCAGTC
TTTCTCTAAGCAAGCTGTTTTCTGGCCTATACGGAAAGAGTTTTC
Right flanking sequence: Indices 186222 -- 186721
GAACCCCTTTCCTTCCGTCAGTCTCCAATTTTCGTTAGTTCTCTCTCTCTCTTAACAGAGCGGAA
TTCTCCCAGTTTCCATCTTTCCTTTTAGAGTTTACCACTTGCCCTGACGGGGGCTACCGCTTTCG
TTCAGTTTTCTCTCTACCTTTTCTTATTTTGACTTCATTTTCAAATCTTTTATGCTCGGCCATAC
CAACATGGGAAAGACCTAGCCTTCCCTCCCTTTGAAGTGCATTTATCAGATCAGCTCCCAGAGTA
ACTAGAAAGAGGGTGAAAGGCCCAACTTCTTCATTCATGGCCTTTTTTGTTTCTTTGATTGATCT
CCCTTTCGTATTCATTCGACCTGAGGCGTTCCTCTCAGTCATACAAAAAAGAAAGGTTATTTCAT
GCAATGCATAACGGGTGGGCCTCCTATGGATTCCTCTAACTCAATGAATGAAGGGAGGAGTATGA
GGAAGGCCGGCTTTCTAGATGAAAATGAAAACAAAAAGGAAAAGG
Found at i:191573 original size:15 final size:15
Alignment explanation
Indices: 191553--191584 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
191543 TTGGCATTTC
191553 TCTTTTCTTGCTCTT
1 TCTTTTCTTGCTCTT
*
191568 TCTTTTCTTTCTCTT
1 TCTTTTCTTGCTCTT
191583 TC
1 TC
191585 GGTAGTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (15 bp):
TCTTTTCTTGCTCTT
Left flanking sequence: Indices 191053 -- 191552
CATGCCAGCCTTGACCAATAGATCAGTAATGTTTTGAGAAAGATAGAAGCAGAAGTTCTACTCAC
TTTTTGACCAAGATTGAGCCAGATACTTTATAGAAAAGATGGCATTTTTGATGCATACTATGTCA
TCAATATTCAGAGGATTGGACCATGTGATTCTAAGATCATCAACATATACTAGAATGTACAGAGC
ATGACCACCGCTCATAAAGAGAGAGAGATAAAGTTGACTGAAAACCAAGCTCAGAGAGTTCTTTC
AAAGCAGCAAGAGTAGTCATGAATCATTCTTCCTTCGATTGGATAATTCCCATTGGATTGTCAGC
TATTGCATCAAATGTTCCAGCTCCGCCCAATTCTCGAAGTCATGTTAGGAGAGGTATTTCTTACT
TGACTAAAAAGGTACGGAGTGACTTGACCCTTGGGAGAGGTATTTCTTACTCGGAGAGGGAGGCC
ACTATCAGCTACTCTGCAACTTCTCATCCCACGGGTTGGCATTTC
Right flanking sequence: Indices 191585 -- 192084
GGTAGTGGACGGGCTAAAGGGATTTGCTTACGCGCTAGCGCTTTCGTTCACTTTTCTCACATTTC
TAGTACCAACTAATACTAATGAATTCGGGCGAGAGTCTTCAAGTATAAGGAGATGGTAAATAAAC
AAGTGCTCCAGTTCCACCGGTTCCTAATTAATGGGGGAGTTGCTGCGCTCTCTTCTATGTAAAGA
GAGATTTTCCACGGTAAAACAAGTGCTTAGCTTTGTTACTACATCCCGATAAATAGGTTAGGTTA
CTTTCTTGCTACGCCCGTTGACTAACTAGAAGAAAGAGAATGAATAGACAGGATAACTAGTTCCC
GTTGGTTGACAACAGCTCCCTTTTCCTTTAGCTTACCAGTTATACCTAATGTGGCGCGGTCGACA
TATTACTATAGGGCGAGCTATGTTAGCCAACCCTTTCCTCAGCTGCAAGGTCTCTGCCATAAGTT
TCAACCCAAACTCAGGCAACTTAAGCACCGGCTCTAACTTGATAG
Found at i:205152 original size:21 final size:21
Alignment explanation
Indices: 205128--205184 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
205118 AAGGACAGAG
205128 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
205149 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
205170 AACAGATAACAACAG
1 AACAGATAACAACAG
205185 TAGGAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (21 bp):
AACAGATAACAACAGCATATT
Left flanking sequence: Indices 204628 -- 205127
AAGCAGACAAGCTGGTGGATCATCTGATCTTGAAATAGGTCATCCCAGCTATCCCGCCCGATCTT
TTCTCTCTTTATTTCGTCAGGTATCTGAATCATACAATTCCTCGGATGTAGCTTTTCACATTGGA
CCAAAACAAGGCCCGGAAACCCCGCTAGCTTTGTTGATAGAAAGTTAGCTTCCCGTGCTTGACTA
GTAGGGCTAATGAACGACCCTTAACTATGGAATGTTACGCCTTTCCTCGTTTACTCACAACGTAA
TCAACTCCATTGGTTATTTTCCCGGGGGGAACACCTATAGCCCCAATAGACTGATTTAGTAGGTA
TGATGTATTACTAGGAGTCTCTAAGTTCCTGCTTTGGTTGTCCCTGTCCGGGCTAAGCGGAGTTT
AGCTCCGGCCGTTAATAAGAGCTTCCCTCCATTCCTTCACTACACATTCAAGCATAGGAACAGAA
GCTACGCTAACAACCTATTCCCACCTAACAACAGTAAGGACAGAG
Right flanking sequence: Indices 205185 -- 205684
TAGGAATATAGCCCTATAACAACAGCTAATAGCAGTAAGGAGATAACAAACAATCCATCAACGCT
ATAACCATACTATAACAGCCAGCACTCGGTACACAACATACAGTAGCAGCAGGAACTAATATAGG
TTAGTCGTCAGAGAAAAACCTATATTAGAAAGAAAGCTACTTCTCGGCCGGAAAGTACACTTCAA
AGAGAGGAGAGCAGAACAAAGGTAATGCTACCCGAACATTGAAGCCAGTCCCGGACAACCCGGAA
GGAAAGGGAAGACAGAACGACAATCACCGGAGGGATACGTACGGTATACGGGCCCTTCTCAGTCC
GCCCACAAAGAAGAAAGGAAAGGAGCTGCAACAGCTCAGCAAATCATAGTTGGATTCGGGGATAC
AACTATCAGGAAGAAAGCAGCACTTCCACGCAACAATAGAAGTATCGAGAAAGCAGCCCGTAATA
CAGACACAACCAAGGAAAGGGAAGCGGACAAAGGACGCATTCCCA
Done.