Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: JF920286
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 360271
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Found at i:11769 original size:15 final size:15
Alignment explanation
Indices: 11749--11780 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
11739 GTCCACTACC
11749 GAAAGAGAAAGAAAA
1 GAAAGAGAAAGAAAA
*
11764 GAAAGAGCAAGAAAA
1 GAAAGAGAAAGAAAA
11779 GA
1 GA
11781 GAAATGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.28, T:0.00
Consensus pattern (15 bp):
GAAAGAGAAAGAAAA
Left flanking sequence: Indices 11249 -- 11748
CTATCAAGTTAGAGCCGGTGCTTAAGTTGCCTGAGTTTGGGTTGAAACTTATGGCAGAGACCTTG
CAGCTGAGGAAAGGGTTGGCTAACATAGCTCGCCCTATAGTAATATGTCGACCGCGCCACATTAG
GTATAACTGGTAAGCTAAAGGAAAAGGGAGCTGTTGTCAACCAACGGGAACTAGTTATCCTGTCT
ATTCATTCTCTTTCTTCTAGTTAGTCAACGGGCGTAGCAAGAAAGTAACCTAACCTATTTATCGG
GATGTAGTAACAAAGCTAAGCACTTGTTTTACCGTGGAAAATCTCTCTTTACATAGAAGAGAGCG
CAGCAACTCCCCCATTAATTAGGAACCGGTGGAACTGGAGCACTTGTTTATTTACCATCTCCTTA
TACTTGAAGACTCTCGCCCGAATTCATTAGTATTAGTTGGTACTAGAAATGTGAGAAAAGTGAAC
GAAAGCGCTAGCGCGTAAGCAAATCCCTTTAGCCCGTCCACTACC
Right flanking sequence: Indices 11781 -- 12280
GAAATGCCAACCCGTGGGATGAGAAGTTGCAGAGTAGCTGATAGTGGCCTCCCTCTCCGAGTAAG
AAATACCTCTCCCAAGGGTCAAGTCACTCCGTACCTTTTTAGTCAAGTAAGAAATACCTCTCCTA
ACATGACTTCGAGAATTGGGCGGAGCTGGAACATTTGATGCAATAGCTGACAATCCAATGGGAAT
TATCCAATCGAAGGAAGAATGATTCATGACTACTCTTGCTGCTTTGAAAGAACTCTCTGAGCTTG
GTTTTCAGTCAACTTTATCTCTCTCTCTTTATGAGCGGTGGTCATGCTCTGTACATTCTAGTATA
TGTTGATGATCTTAGAATCACATGGTCCAATCCTCTGAATATTGATGACATAGTATGCATCAAAA
ATGCCATCTTTTCTATAAAGTATCTGGCTCAATCTTGGTCAAAAAGTGAGTAGAACTTCTGCTTC
TATCTTTCTCAAAACATTACTGATCTATTGGTCAAGGCTGGCATG
Found at i:17164 original size:34 final size:34
Alignment explanation
Indices: 17112--17179 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
17102 AAAGGGGTTC
*
17112 CTCCTCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
1 CTCCGCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
**
17146 CTCCGCTGAGAGGGGAGAAGCTGGGTTCCTCCTT
1 CTCCGCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
17180 GAAAACTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (34 bp):
CTCCGCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
Left flanking sequence: Indices 16612 -- 17111
CCTTTTCCTTTTTGTTTTCATTTTCATCTAGAAAGCCGGCCTTCCTCATACTCCTCCCTTCATTC
ATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAAATAACCTTTCTTTTT
TGTATGACTGAGAGGAACGCCTCAGGTCGAATGAATACGAAAGGGAGATCAATCAAAGAAACAAA
AAAGGCCATGAATGAAGAAGTTGGGCCTTTCACCCTCTTTCTAGTTACTCTGGGAGCTGATCTGA
TAAATGCACTTCAAAGGGAGGGAAGGCTAGGTCTTTCCCATGTTGGTATGGCCGAGCATAAAAGA
TTTGAAAATGAAGTCAAAATAAGAAAAGGTAGAGAGAAAACTGAACGAAAGCGGTAGCCCCCGTC
AGGGCAAGTGGTAAACTCTAAAAGGAAAGATGGAAACTGGGAGAATTCCGCTCTGTTAAGAGAGA
GAGAGAACTAACGAAAATTGGAGACTGACGGAAGGAAAGGGGTTC
Right flanking sequence: Indices 17180 -- 17679
GAAAACTCTTTCCGTATAGGCCAGAAAACAGCTTGCTTAGAGAAAGACTGACTCTCCTACGGACC
TGGTGGACCTTACAGTCGAGTTATTGCATTCCTCTCACAAACTATCAATTTCATAAGAGAAGAAA
GATCGTTTTTAGAAAAGAAAGAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACG
AGTAAGAAAGTGGTTACGCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCC
ACAAACCACTGAGAGCTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTT
TGATGAGCCTGCGTCCGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGC
TGCCCAGTCGTGCCGAGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCT
CCACTTGTCGCGTACTTCTTTAGCTGCACCGTCATCGCCGGCCGG
Found at i:36301 original size:17 final size:17
Alignment explanation
Indices: 36281--36319 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
36271 CATTTCTTTC
*
36281 ATATCTCCATTCTCATA
1 ATATATCCATTCTCATA
36298 ATATATCCATTCTCATA
1 ATATATCCATTCTCATA
36315 ATATA
1 ATATA
36320 ATAGGGAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATCCATTCTCATA
Left flanking sequence: Indices 35781 -- 36280
ATAACGCTTTTCTTCCGATCTCACAGTTCCTTTGTCCCTTGTAAAGCATTCTATCTGTGGCCACG
TGCTACTGTGGAGCTTTTGAATCGACGTCAACCAGAAGAAAGAAGAGAGCCAGAGCGCCATACCC
TTCTCGGAAGGAACCCGCCCTTGGAAGAGCTACTAGGGCATCGCATCTATGCTGAAAGAGCACAA
TCCTTGATCTAGAGGGAGCCATTCCTTACCTTAGAGGAAAAGACTTAGCCCAGTCCTCAGTTTCC
ACTTACAGAATAAATGAATCACTTTGCCACTCGACGAGGCAGATAGCTCCTCTGGTGCTACTATA
GCCTTTGTGGTTGCTTCGCTAGGAAGAGCAGCACTTATATTGCTTGGATTATCTATTCAGCACAA
GCACACCGCTGTGCTGTGGAAGAGTAAACGAACTACTATCGATGTGTTACCTAAGAGATTAGCCT
AAACGAGAAAAGGGAGTGTGCTGGACTGACCTTTGCATTTCTTTC
Right flanking sequence: Indices 36320 -- 36819
ATAGGGAGGCGCTGACCTTACAATTGTAAGAGTTAAATGACCGACTGACTTGAATCTGTTTGCCG
TTGGTCCTTATCTTTAAGATAATGTTAAGAGTGGTAAGGGCTATGGGTATAGAGCCTTGGCCAAG
AGGTTGATTGAGTCAGTAGACCTAACGTACGCTTAAAGAAAAAGACAGCTCTGATCACCCTTTAT
CTTTCTCGGACTCCAGTAATATGTGTGGGGCAAGTAAACGTCAGCAACGAGGACTTCTTATTGGG
CTTACTGCCTCTGCCTGTCTTAGGTACCCAAGGGGAGTCCTACTAATAGCCATGCTGAGCTGTCC
TTATCGTAGTCATCTTTTCCTATTATTGAACAGTTTCAACTTGCATGTGTTAAGCATAAGCTTAA
ATCTTTCGAAGCTCCACTGATTCATCAAAATGCATCCAAAAATCCCGGGATATTAGCACTTTTTC
AGGCTGTTTTGACCTCGTCAATCAAAAACAATATCTTACAACATT
Found at i:42599 original size:18 final size:18
Alignment explanation
Indices: 42560--42601 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
42550 CTGAGGCGTA
*
42560 TTCCA-CAAGACGGTACC
1 TTCCATCAAGAAGGTACC
42577 TTCCATCAAGAAGGT-CC
1 TTCCATCAAGAAGGTACC
42594 TATCCATC
1 T-TCCATC
42602 GTCTGGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (18 bp):
TTCCATCAAGAAGGTACC
Left flanking sequence: Indices 42060 -- 42559
AGAAAGACAGAAAGCATTGTTTGATCAGCCAGAAGAAAGGCTGTTCCGAAGGTTCAGTTGCACAT
GTGGTCTAAAAAAAAAGGTTACAGGTAGTGATGAGCAGCCTGCTCCTAAAGAACGGAAGGAGACT
TGTTTCTTCTCTGCGATGTTCTTGGAAACCGCGGCTTTTGCCCGCCAGCTGCGAATCATTCATTC
AGAACCGGATGGTATTTTCAGTCCAGGTATTCTCTTTCAACCTGGGTATACTTTGTACCCGTTTG
ATACGAAATTTAGTACCTGGGCAGCTAATGAAGGGTTGAGGTTTTATGAGGCTTGGCCTGGCTTG
GTGTTTGATTCCCTCGCCATGGGCTTCGACCGTTCTTCTCAACCTCTTTATTCCGGACGTTTGGC
TCAGTCCTTAGAGGGTGCCGGAAAGCGGCGTTTGTTTGTAATCGGTAACTGGTTTAAACAACGTC
TGTTATACCCCGTGCATGTGTGGGGTATGTCTGTTCTGAGGCGTA
Right flanking sequence: Indices 42602 -- 43101
GTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGG
CCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGT
CAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTG
TGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCAT
GCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGC
TTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTG
ATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTC
GCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCA
Found at i:45150 original size:15 final size:15
Alignment explanation
Indices: 45130--45159 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
45120 ACCCTTCTTA
45130 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
45145 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
45160 CAAAGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGAAAACTGGCATC
Left flanking sequence: Indices 44630 -- 45129
CAACTGTTAGAATTTCGATCGAACAAGTATTGGCATTCTGTCAGCATTTCCCCCGCGGTCAGTGA
TAGTTAGGAAAGGAAGAAAGAAAGGGTGATACACGAGAAGCTAGGTCAGGTATATATAGCGATTG
CAGATGGTGCACTAGTTTCGTATACATAGGCCCTGGTTGGTAAGGTGATAAGATCGACACATTAT
ATGCGATCTACGTTCATAGGTTCTACCTTGAAGCTCTTCTCCTTTCCTTACTCTAACAAGTAAGC
AAATAGGAATTACCTTGTGAAGCAACGTAAATTTAGTGAGTTTTGGGAGGTTAGCCTTAACACAT
CCAAATCTTCCGAAGTCAATGCGGTAGCAGCCACTGTCCCGACCTTTTCTGTCACTCCTTCCTTT
GAAAGGAGCTTTTCGCCGTTAAACTCAGCTCTTTTTCCGGCTTTACCGATTAGATCAGTTTAGAC
CTTACCTTGGGATTGGTTTTTTTCCTTTAAGGCTGACCCTTCTTA
Right flanking sequence: Indices 45160 -- 45659
CAAAGGTCCTCAACCAGGGAGAAATCGACAAATCTAGGATAAAGTCCACTTGAATCGACCAAAGG
GGAAGGAAGTATGAAAATCCAATTCTTTGACGGAAACTAAAGGCTAACCTACAAGCTAGCCTCGT
CGAATCGACTCACTCTTTTAACCTCAAAGGGAATCTGAGAAACAAGTAGATCAAGGATTCCCATG
TTGCCTATGGTGTCTTGCGAATTCCTAGGAATGTTAGGAATGGGAGAACCAGTAATCCCAGTAAT
CCCAGGAATAGGAGGTAAGGAGATTAGTTGGTTAGGAGGGAATCCCAGCAATATTAGCAATGAGG
TGATGAGATTAGGTTTGTTTTGGTTAGGGATTAGAGGAATGGGAGAGGTAAGCCAAGTAAGGTAA
GGAGTTTTTGTTTGTAGAAAGTTCCATTTCAATCTGCCTATCTGTTTGAATCAGTTTATCCCAAG
GAAGTGTTTTACTCTTTTAATTGGTAGTTGGTTAAGGAATCCCTG
Found at i:84550 original size:19 final size:19
Alignment explanation
Indices: 84526--84564 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
84516 AAAAGGTCAA
84526 TCAGACCATTTGTAAAATC
1 TCAGACCATTTGTAAAATC
84545 TCAGACCATTTGTAAAATC
1 TCAGACCATTTGTAAAATC
84564 T
1 T
84565 GTCCTTTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (19 bp):
TCAGACCATTTGTAAAATC
Left flanking sequence: Indices 84026 -- 84525
GATGAAACTCTGAGAACTAGAAGCAAGGGAATCAAAAAAGTCTATTCTTGACGTGAACGGCCGCT
TTGTCATTAGAGTGTGAGAACCTTAAGGAGAAAGCTTTTTGATTGATTTGTTTACTCAACTCGTA
AAGGCTCATCAAACAGCGCTTTCTAGCTTTCTTCAGGATTTAGCCTGAACCGATGCCAGAGCTCT
CAGTGGTTTGTGGACTCGAACCACAGTAGGAATTTACAGTTCCGGCTCCCCAGCGGAGCGTAACC
ACTTTCTTACTCGTAAAGGCAAAGAAAAAAGGGATCCGCCTCGAATCAAAACGTTCTTTCTTTTC
TAAAAACGATCTTTCTTCTCTTATGAAATTGATAGTTTGTGAGAGGAATGCAATAACTCGACTAT
TTACATATTTGATTTCCAGCAACTGATCTTTCTATCTTTCTGCTCCATCCTTCTTCTAAAACTGC
TATCCTTTCAGATTGACTCCCTACTCATAAGAATAAAAAGGTCAA
Right flanking sequence: Indices 84565 -- 85064
GTCCTTTGGCTAAACAAAAACACTTACCTTTTCAATCTCATAATAACATTTGTGATGAACCTTTT
GATCTGATTCACATTGACATTTTGGGCCCTTTTTCAGTTGAAACCACAGAACAGAAGGTTTTCGA
TATTTTTGAACCATAATGGATGATCATTCAAGGGCTACTTGGGTCTATCTTCTCAAAAGTCAAAG
AGAGTTTCTTCCCGAAGGGGGATGGAAAAATATAGCAACTCGTACTACCTAATATTCCGCTCTAG
GCCTAGTGCTACTCGCATTAGATTCAACCATCTGCCTAGATCGGAAAGAGATAGCTCTAAGAGCA
GCTTTCCCCGTTCTGACCGGTGCATCCAGAGCAGAGCAACCTCCCCTCTCAGATTTTTTTGAGTT
AGCCATAGGTAAGAAAGATGCCCACTCTTTTGACCTGCCTTACCCTTCAAGGCAGTTCTTCCTTA
TGAAGGTGGGACTGTAAAAGAACCGGTTGAAGTACCAACTCCAAC
Found at i:87072 original size:14 final size:14
Alignment explanation
Indices: 87053--87082 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
87043 ATTAATACGT
87053 CGCTTACCCGCCTC
1 CGCTTACCCGCCTC
87067 CGCTTACCCGCCTC
1 CGCTTACCCGCCTC
87081 CG
1 CG
87083 TCGCTTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.57, G:0.17, T:0.20
Consensus pattern (14 bp):
CGCTTACCCGCCTC
Left flanking sequence: Indices 86553 -- 87052
TTGCTAGCTCGGTAGGCGCACAGGCGCGGGTTCCGGTTGAAGAGTCAAATTCTCCTTCTTGTTTT
TATTGTGAGAATCTTTCTCTATACTCTATATAAGATGCCATCTGTTTTCTTTACTCGTTTCCTCC
TTAGCTTTGAATCTATCTGTGACTGTTCTCCTTCTTCTCTAAGGTCTGTTCCTTTGTTCCTTCTT
TGTGCCTTCATTTGCTTTCTTTTGTTTGACTGTTAACTTAAGTATCTACCTTCTTCCTTTGGTTT
CTTGTAGTTCTATCAGTTAGTTCTTCAATGGTTAGCTCTGCCTGAGCTGGAGTTGTCCCTCCAGC
GAGAGTTGCTTTCTTCCTTGCTTGATCGGTAGGAGTTGCCGAGATAGCAGGTATTAGCTGTTAGC
CGTCGGACTCATTTAAAGGAGTCCTATCGGGCTACACTAGTCTAAGGGCAGTTGAGTAACCGATT
CCTACGCTTCCTCCGCTTACCTCCGTCGCTTAACTATTAATACGT
Right flanking sequence: Indices 87083 -- 87582
TCGCTTGTTATCTGCTTCCCTTAGCTAAAACGTTAGGCGCTAGTGAAAGCCTTCACTCTCTTATA
TTTACGTACACGTGGGAAGAAGACCTAGTAATTGAGTGACAGCATTCCTGGACCAATTCTATAAA
CAGCCAATCAGGCATATCATGGTACAGGTGAAAGAAACTTATCCAATACAGATCTTATCACCTGC
CCATCAACGAAAAACCGTCTGCTCCTCTCGTGCGTGTAGGAATAATCAAAAGAGGAGACAGCATG
CCTATTATTAAGAACCCAATTCTACTAAAAACGATAACAACGATTCGAGGTTCTCAATCAAGGCA
GAAAGCAAGAAACCCATCCAGCTAGGAGGAAAGCAAATCAAGCTATGGAGACCAATCAGACATCT
AGATTCTATAGTACGCGTATGTGTACGTACCCAGGCTAAAACAGCAAATCAAACTTGGCTATCGT
TTGAGAGCAACCTATCGCTAAACCGAGACCGAGATAGAGAAAGAG
Found at i:90928 original size:31 final size:30
Alignment explanation
Indices: 90893--90958 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 30
90883 TTTCTTGTTT
90893 ACTCGAACAGCAAAGGAGAGGTGCTTTAGCA
1 ACTCGAACAG-AAAGGAGAGGTGCTTTAGCA
*
90924 ACTCG-ACTGAAAGGAGAGGTGCTTTAGCA
1 ACTCGAACAGAAAGGAGAGGTGCTTTAGCA
90953 ACTCGA
1 ACTCGA
90959 CTGAAAAGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 25 0.76
30 3 0.09
31 5 0.15
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (30 bp):
ACTCGAACAGAAAGGAGAGGTGCTTTAGCA
Left flanking sequence: Indices 90393 -- 90892
GATTCCTCGAGAACTCGAAGTTCAAACGGATCCTCCTTCCACGTGGATGAGCTCTCCGCCCCGTT
AGGGCCCGTAGAAGGAAGTGCTCCCCCTCCTACTGCAGCCCATATAATGGGCTCCAACAGGGGCA
AAGCCTGACCACCCAGTAGGTGGATGACTTTGATCCGTATCAAAGATATTACCACGGCGATGAAA
AAGACCAAGAAGAGATTGAGAATCTCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAA
TAAAAATAGGAAGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTT
CTGATCCTAGAAAACGTTTGAAAAAACCTGCTACGGAACTACCGAGCAGGAGTAACAATAGTCGA
ACTAGATTTTTAATAACATAATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCTTTATCAGAG
AGGGGCCCCGTTAGGGGTATTTAGTAACTCGAGCATTTCTTGTTT
Right flanking sequence: Indices 90959 -- 91458
CTGAAAAGGCGTTCCTCGGAGTGACTCGAGCACTTGTTTAGAGAGGTGCTTTAGCAACTCGACTG
AAAGGAGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATT
ATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTT
TTTTATATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGAT
TCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCA
CTCCCCGAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAG
ATATCCCCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACG
AAAGGGACAAAAAAAAAAAAAAGCCATTCTTCATATACCTCAGCT
Found at i:90938 original size:29 final size:29
Alignment explanation
Indices: 90904--90964 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
90894 CTCGAACAGC
90904 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
90933 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
90962 AAA
1 AAA
90965 AGGCGTTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (29 bp):
AAAGGAGAGGTGCTTTAGCAACTCGACTG
Left flanking sequence: Indices 90404 -- 90903
AACTCGAAGTTCAAACGGATCCTCCTTCCACGTGGATGAGCTCTCCGCCCCGTTAGGGCCCGTAG
AAGGAAGTGCTCCCCCTCCTACTGCAGCCCATATAATGGGCTCCAACAGGGGCAAAGCCTGACCA
CCCAGTAGGTGGATGACTTTGATCCGTATCAAAGATATTACCACGGCGATGAAAAAGACCAAGAA
GAGATTGAGAATCTCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAATAAAAATAGGA
AGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTTCTGATCCTAGA
AAACGTTTGAAAAAACCTGCTACGGAACTACCGAGCAGGAGTAACAATAGTCGAACTAGATTTTT
AATAACATAATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCTTTATCAGAGAGGGGCCCCGT
TAGGGGTATTTAGTAACTCGAGCATTTCTTGTTTACTCGAACAGC
Right flanking sequence: Indices 90965 -- 91464
AGGCGTTCCTCGGAGTGACTCGAGCACTTGTTTAGAGAGGTGCTTTAGCAACTCGACTGAAAGGA
GAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATTATGTTA
CCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTTTTTTAT
ATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGATTCGAAC
CTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCACTCCCC
GAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAGATATCC
CCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACGAAAGGG
ACAAAAAAAAAAAAAAGCCATTCTTCATATACCTCAGCTCCGAGA
Found at i:111900 original size:27 final size:28
Alignment explanation
Indices: 111841--111914 Score: 132
Period size: 27 Copynumber: 2.7 Consensus size: 28
111831 AAAGAGCCTA
*
111841 GCTTTCTTGGTTTGATGAGCTTATACTC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
111869 GCTTTCTTGGTTTGATGAGC-TATACAC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
111896 GCTTTCTTGGTTTGATGAG
1 GCTTTCTTGGTTTGATGAG
111915 TGAGTAACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (28 bp):
GCTTTCTTGGTTTGATGAGCTTATACAC
Left flanking sequence: Indices 111341 -- 111840
TACCCTTTCTTTCTATGAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGAACCTTGCTGCTTAC
TTGCTATATTCCCGCGTTCTTGCATGGCTCGCGCGCAACCCCGCCCTGCTTCTCCCTTCCCCCTT
ACCGTCCAAAACTCAGAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCG
GCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGA
GCTGACGACTACAGGGGAAGCTCTCATTAATTAGTTGATGAGGGGAAGCGGCTGACAGCAGTCCC
TGAGCTAAGCCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACT
GCAATAATTCTTGCTAAGAAGAACGCCCACCCCTCTCTGTTTGATAACAGTTTCCTCCTAGTTTG
CTTGAAACAGATAAGCTTGCCCAACTGCAACAAAGAAAGAGCCTA
Right flanking sequence: Indices 111915 -- 112414
TGAGTAACAACTTCTGAGTTGACTTGGAAGAAACCATTGTGGATTGTTGTAGTTCCGTGCTAATT
AACAGGTTCTTTGCCTTTATTTAAAACAGGTTTGGCGTTGCATTCATCTAGGCTGTAGCCTCTCA
TACGACAAGAAGGATTTAGATCGGGGGATTTTCGTAAATGATTCGTTGCCAGCGCCCAAACTTTC
CCATCCCCAGCCAAATACGATTGGGCATATCCTTCAAGAGATCAACCAATACGCATACTGCGCAA
CACTAGGGTGGTCGTAGATCAGCTAACTGGGGCGTCCATTGGTGGAACTCAGCCGGAACCTCAAT
ACTGTGTAGTGCCCGAAGAATTACTACGTAATTTTGTCTAGTTTAGTGATAGCAGTAGGTCGGTT
CGCTGTGGCTCTAATGCCGGCGATGAAGCAAACAAATAGGGTGTGATAACATTCAGACCTATTTG
AGACTAAGAGGGGCTGGTTACCGGAGGTATTCCTGTCAGCCTTGT
Found at i:124681 original size:12 final size:12
Alignment explanation
Indices: 124664--124688 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124654 AGTGAATGAT
124664 TGAACTGATAGC
1 TGAACTGATAGC
124676 TGAACTGATAGC
1 TGAACTGATAGC
124688 T
1 T
124689 TCAAAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TGAACTGATAGC
Left flanking sequence: Indices 124164 -- 124663
GGGGCGAAGCCCACACCACACAGTTGTTCAATTTGAATGTCATTCTCGACTTTATCCCTTCTCTA
ATCTAATATCTAATAGGGCTGGGTGTTTGATTTCAGGCCCTTTCGAGGAGGGTATCTGATTGGTT
AATGTCAGCCCGGCTCGCATGGACTTCCGGTGTTTCTTAGTTGACAACTGCATTGAAATTAGAAG
TTCTCCAGTTACTCCTGCACAAGCAACAGCAGTTATGGATCTGATTGAGGAGCGCTAGGAAGAAT
GGATCGAACGAGAAGGATTAGAGCAAGTTCCGTTCTGGGTGAATCAAGAAAGGAAGTTCCGGGAG
TTCTGTGTCCCGAAGAGAGAAAGCTCACTAAGAACTAGCTTGGCCGTAGTTCCTCGTAGGAGATA
GACGGACCAAAGGCGTTCCTCGAGAAAGGCTGACCAATTGCAGATTCCGAAAAGAAATAATTTCA
CTGTCCTAGTTATGCGAGACGCCCTCTTCCTAGCGAGTGAATGAT
Right flanking sequence: Indices 124689 -- 125188
TCAAAAGGTGACTCTTCTCTTTCCTTTTGGTTAGCTTGCAATACAATGCGGATCAGCGAGACTTG
CTTGAATGCTTGCTAGACTTCCTTATTCTTCTTTTGAAAGCAGCTTTTACTCAGATAGCTACTTC
TGCAAGCTAGTAGGTTCAGTAGTCACAACTGATTACCCTCTTGTTTGGAACCTTGAGACGAAGGC
TAGCTCTTTCCCTCTCCTTTTAGTTTCTTAGTCAAAATGGGTGATGGTATTCTGCCTAAATAGTA
GACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTCAATTCTGACACAA
GGAACTTATACTTATTAGATCTAATAAGTACATTAGACCTAATAGAATTATTTTGCTGTATCCAG
ACTAATACCAATCCAACCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACTACT
TGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATGTT
Found at i:128342 original size:31 final size:31
Alignment explanation
Indices: 128304--128384 Score: 153
Period size: 31 Copynumber: 2.6 Consensus size: 31
128294 CGCCCTTGTC
128304 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
1 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
128335 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
1 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
*
128366 CCTCTCCTTTTAGTCGAGT
1 CCTCTCCTTTCAGTCGAGT
128385 AAGAAATACC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.15, C:0.30, G:0.16, T:0.40
Consensus pattern (31 bp):
CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
Left flanking sequence: Indices 127804 -- 128303
TCATCACTACCTCGTAAGGGCATTGAGACCATAGCATGTTACACGAGGAAAAAAAACCTTGTAGT
GTTGTCATACAGCTGCCCGCCTAGAAGAGCCACTCGCTCTGTAGTGTTGTCACACAAGATAAGCA
CGCCGCCCGCCTGCTGGCCGGGCGAATCGAAGTTCTCTTCCGGTCAACTGTCCACCCAGTCAAGT
GCAAAAAACACAGTAGAATCACGCAACGCACGCTGCTGGTGTGCTTCCTGCCCGCGAGGAAAGAA
AGAAGAGCGACAAGGTTGAGTTCTGATTTGACTGTTTGCAGCATGGGAGCAGATTACCCAAAAAA
TCCCTGGGAACAATGAAAAAAAAAAGATATCTCGGTAACAAAAACCATAGGGGGCTGTATTGGCG
AGATCCAACGGTGAACAGCTGCCCAAAATCAAAACCGCCTGGAAGTCCGAGGACCTTTAGTACCG
TACCCCCAACCAGCAGCCTTCGCGCCAAGCAAGACCGCCCTTGTC
Right flanking sequence: Indices 128385 -- 128884
AAGAAATACCTCGGGAAGTAGGGCTCCTATTGACTAAAGATTGGTTCTTCGCTTTCCTTTAGAAT
GAAAGTAGCTATGAAGCCCCTACCTACAACTTACTTTGTTTGATTCAAAAGGCGAACAGCCCCCC
CAACTAGTCGTATGGGGTGGGGTTCTTGTGGTAAGCTGCCTTGGATATGATAAATTCCTAAAAAA
AGGCAAAGTCCGCTATTAGACGAAGATCTTCCTATCAATAGATAGGAATTAGTGTTCGATATAGG
GGATAGGATCTATCTGCTCTCTCTTAAAAAAAATTGAGAGAGCAGATATAACGATATAAAATCGG
AAGGATAGATAGACATCTAAAGAAAGGGATGTCTATTCTATTCCTCTTTTTTTTATAGAAAGAAA
AGATATCTCGTTCATCTATCTTTTGTTTATTTATCATTGATTCTATCTATGAATCAAGTCGAATT
CGTTTTTGGCCGAAGCCCCGAATGGATTGGATCGTTTCCGCCAAC
Found at i:131912 original size:22 final size:22
Alignment explanation
Indices: 131884--131932 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
131874 CTCGCTACGC
131884 TCGAGATCTTTGAACCTTTCAG
1 TCGAGATCTTTGAACCTTTCAG
*
131906 TCGAGATCTTTGAACCTTTTAG
1 TCGAGATCTTTGAACCTTTCAG
131928 TCGAG
1 TCGAG
131933 TGCCTTCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
TCGAGATCTTTGAACCTTTCAG
Left flanking sequence: Indices 131384 -- 131883
AGCTAACCCCTGTCCAGTGCCTGGCAGAGCTAAGGGGCTTCAATCCTTATTCCTTATCCCCATCT
TCGCCCAGGCTAACGGGGCCTTACTTATTCAGGGGGGAGCCCCGAGAAGCACTGTTGAGAAGAAG
ATCCTAGGCCCCTCTTCATTCTCTACAGGGTTTCTTTCTTCAATATATATATAGGTGACAACGAG
CGAGGCAGAGATGGAAGAGATCAAAGACGAGAATAAGAAGCCAGTAAACTTCTTCCTTTTTGATC
ATTTTGTTTGATAGAGGGGGATAGAAAAAATGGACAAAACTGACTCGCATTTCTCATCGAACAAA
TACGAAAAAAGAATCATATTGAAAACTGAAACCTCACCTCTCCTCTCGTTTCACTCTCGAGGAAC
GCCTTACAGTCGAGCTCCTTTGTCACTCCGTGCCTCTCTAGACAAGTGCTCGAGTCATGACTCCG
AGGAACGCCTTTTCAGTCGAGTTGCTAAAGCACCTCTCGCTACGC
Right flanking sequence: Indices 131933 -- 132432
TGCCTTCGGCCCTCTCCCACCAAGGATAAGGTCTCATTAATTAGTTGATGAGGGGTCGAGTTACT
GCGTTCCTAACCCAACTCCCTCCTTCTCCGAGCTTTGTATTATAAGTGATCCGAACCTGCCCGGA
GTGAGCCTCCCATAGAGGCAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTTGGAG
AGGACTCAGCTGTTAGTTAGTATCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTATTTTATTAT
ATACGCTTAGTGAAAAGAATGTTTTTTGATACACCTAGGACATGGATTCTATATGAACCAATGGA
TCGTAATAAGTCGTTACTACTAGCAATGACTTCCTTTTTCATTACTTCATCCTTGCTATACCCCT
CTCCTTTGTTCTCAGTTACTCATCAAATGGCACTCAGTTCATATCTTTAAGTTCGATCATTGACA
AGGTTCAAAGAAAGGGTGGGCCGTCGGTTTGAATCCAATATTATG
Found at i:134351 original size:36 final size:36
Alignment explanation
Indices: 134304--134390 Score: 149
Period size: 36 Copynumber: 2.4 Consensus size: 36
134294 AAAGCCTGAA
134304 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
134340 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
* *
134376 AG-TGATGGTTGACTC
1 AGAAGAAGGTTGACTC
134391 ATGAAAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 11 0.22
36 38 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (36 bp):
AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
Left flanking sequence: Indices 133804 -- 134303
TCTTAGGAGTAGATGCCGGGGGGAGAAGGAATTCTACGACTGATTGAGCCAACAAATCCTAGCTA
GAATCTAATCTGGAAAGAACTTGGAACTCTCAACCATAGCTTTGATTTGCTTTTCTTATTGGCAG
AAGTCAAGGCGATTTTAATCTCAAAGAGGCCGATAGGACCAGTATCGGACGAGATATTGACAAAA
GGAAAATCATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTC
TTGTATGAGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCC
AAGAGGAGTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGA
CAATCTGAAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTG
AAACCAACAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAA
Right flanking sequence: Indices 134391 -- 134890
ATGAAAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCT
CTCCTTTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGTATGTTAGTGTTCAGT
ATATCATGTTAGTGTTCAGTATAGCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAA
GGCGGAAGCTGCGGGTTCGAGCCCCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAAT
CTCTCATCAGTTACGAAATATATAGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCT
CAGTCTCTAGGAATTCCTAAGCGTTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGG
AGAGCAAGCGCCCTACCCGAGTCTCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGA
TCGAAACCTAAAGCCAAGTGCATCGATCGGTTTCCTTGCGTTGGG
Found at i:134531 original size:20 final size:20
Alignment explanation
Indices: 134506--134543 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
134496 GTGCTCGAGT
134506 ATGTTAGTGTTCAGTATATC
1 ATGTTAGTGTTCAGTATATC
134526 ATGTTAGTGTTCAGTATA
1 ATGTTAGTGTTCAGTATA
134544 GCCGGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
ATGTTAGTGTTCAGTATATC
Left flanking sequence: Indices 134006 -- 134505
CATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTATG
AGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCCAAGAGGA
GTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATCTG
AAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACCAA
CAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAAAGAAGAAGGTTGACTCGGCAATCTCAA
TTTCGTATGAGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATGAGTGATGGTTGACTCATGAA
AGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCTCTCCT
TTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGT
Right flanking sequence: Indices 134544 -- 135043
GCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCC
CCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAATCTCTCATCAGTTACGAAATATAT
AGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCTCAGTCTCTAGGAATTCCTAAGCG
TTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGGAGAGCAAGCGCCCTACCCGAGTC
TCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGATCGAAACCTAAAGCCAAGTGCAT
CGATCGGTTTCCTTGCGTTGGGAGGGAGATTGAATGAACGCTTGAAAGCTAGCGGGGACTCAGAG
AGAAGAGAGCCAGGGATATCCAACCCAGGAATCGCACGCAGGCTTCTCGCCCCCTTTCTCTGACG
AGGGCGAAGCAGAGATCGAATGCTTCCAAAGCAGGGAAAAGAAGA
Found at i:149605 original size:3 final size:3
Alignment explanation
Indices: 149597--149621 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
149587 CGTGCGCCCG
149597 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
149622 AAGAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Left flanking sequence: Indices 149097 -- 149596
CTAACCTTGAACTGACCCTTCAACTGACTAGGCGCTTGGGAATTCTGAAACCTCCCCCTTTTTCT
TTTGAGACCTACTTCCTCCTTGCTTGAACCTTTGCGACGACTATGGCACCTTTTGGCTTGTACTC
CTCGAGGAACGCCTTATGCCTTAGGAAAGAGAGATGCTAGCTCTTCCTGTCTTCCAGTGGGGTAA
GCAGAAGTGATCAACGAAGACCAAAAAGCTATTATGTTATATAAAGCACAGCTGCCATTTCATTT
CCTTTGCTACCGGCTTCTTTCTTTCTTTTTGTTCAAATCAATCAAGGATCGAAGAGATCTATCTT
TCCGGCTTAGCCGAACTTCTCACCTGGTATGTCCTAGTTCTTTGTTCATGCTGCTAACTCTGAGT
TTTGTCCTACTTCTGATTTTGGTTTTCGTATCATGGATCTTGGTTCGCGCTTTATGGCATTTTCC
CCCTCTCCGTCATCCACATGATGCTAAATCTTTCTCGTGCGCCCG
Right flanking sequence: Indices 149622 -- 150121
AAGAAATAAAAGAAAGGATAAAAGAAAGGCGAAGGAGGATTTCTTGAGAAATCTTGTAGTTGAGG
AAGTGGAAAAGTATCTAGACAAATATAAAAAAAATTTCATGTCCGAGTTCCCTCCGAAGTCACCC
TTATATAGAAACGACAAGTTTCTTGAGCAAGGTGAGCGCTCAACTTCTACAGGATGCCGTATTGC
CAAATACGGCAGACCCGGCAGCTATGCAATTACTTCATTCAGTCCACAATAATTTGGTGTCCGAT
TTTCGGCTAGTGGACAGCTATACCAATAATCCTCTATACAGTTGTATAAGATTTTTTCTAAAGGA
TTATCGGTGAGCAAGAATTCAAATGTAGTTTTTAGTTTCGTTAGTTAACCTACCTTTTTCTTTTG
GTGGTGAGTTTCCTTTTTTATTTTTTTCGCTATGCGCCGCTACGCCAGCAAGGAGTGCCACGCAC
AAGCAGAGCGAAAACAAACAAAGCAGGGTATTCGTTGGGGGAAAT
Found at i:181801 original size:15 final size:15
Alignment explanation
Indices: 181781--181812 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
181771 GTCCACTACC
181781 GAAAGAGAAAGAAAA
1 GAAAGAGAAAGAAAA
*
181796 GAAAGAGCAAGAAAA
1 GAAAGAGAAAGAAAA
181811 GA
1 GA
181813 GAAATGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.28, T:0.00
Consensus pattern (15 bp):
GAAAGAGAAAGAAAA
Left flanking sequence: Indices 181281 -- 181780
CTATCAAGTTAGAGCCGGTGCTTAAGTTGCCTGAGTTTGGGTTGAAACTTATGGCAGAGACCTTG
CAGCTGAGGAAAGGGTTGGCTAACATAGCTCGCCCTATAGTAATATGTCGACCGCGCCACATTAG
GTATAACTGGTAAGCTAAAGGAAAAGGGAGCTGTTGTCAACCAACGGGAACTAGTTATCCTGTCT
ATTCATTCTCTTTCTTCTAGTTAGTCAACGGGCGTAGCAAGAAAGTAACCTAACCTATTTATCGG
GATGTAGTAACAAAGCTAAGCACTTGTTTTACCGTGGAAAATCTCTCTTTACATAGAAGAGAGCG
CAGCAACTCCCCCATTAATTAGGAACCGGTGGAACTGGAGCACTTGTTTATTTACCATCTCCTTA
TACTTGAAGACTCTCGCCCGAATTCATTAGTATTAGTTGGTACTAGAAATGTGAGAAAAGTGAAC
GAAAGCGCTAGCGCGTAAGCAAATCCCTTTAGCCCGTCCACTACC
Right flanking sequence: Indices 181813 -- 182312
GAAATGCCAACCCGTGGGATGAGAAGTTGCAGAGTAGCTGATAGTGGCCTCCCTCTCCGAGTAAG
AAATACCTCTCCCAAGGGTCAAGTCACTCCGTACCTTTTTAGTCAAGTAAGAAATACCTCTCCTA
ACATGACTTCGAGAATTGGGCGGAGCTGGAACATTTGATGCAATAGCTGACAATCCAATGGGAAT
TATCCAATCGAAGGAAGAATGATTCATGACTACTCTTGCTGCTTTGAAAGAACTCTCTGAGCTTG
GTTTTCAGTCAACTTTATCTCTCTCTCTTTATGAGCGGTGGTCATGCTCTGTACATTCTAGTATA
TGTTGATGATCTTAGAATCACATGGTCCAATCCTCTGAATATTGATGACATAGTATGCATCAAAA
ATGCCATCTTTTCTATAAAGTATCTGGCTCAATCTTGGTCAAAAAGTGAGTAGAACTTCTGCTTC
TATCTTTCTCAAAACATTACTGATCTATTGGTCAAGGCTGGCATG
Found at i:187196 original size:34 final size:34
Alignment explanation
Indices: 187144--187211 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
187134 AAAGGGGTTC
*
187144 CTCCTCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
1 CTCCGCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
**
187178 CTCCGCTGAGAGGGGAGAAGCTGGGTTCCTCCTT
1 CTCCGCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
187212 GAAAACTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (34 bp):
CTCCGCTGAGAGAAGAGAAGCTGGGTTCCTCCTT
Left flanking sequence: Indices 186644 -- 187143
CCTTTTCCTTTTTGTTTTCATTTTCATCTAGAAAGCCGGCCTTCCTCATACTCCTCCCTTCATTC
ATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAAATAACCTTTCTTTTT
TGTATGACTGAGAGGAACGCCTCAGGTCGAATGAATACGAAAGGGAGATCAATCAAAGAAACAAA
AAAGGCCATGAATGAAGAAGTTGGGCCTTTCACCCTCTTTCTAGTTACTCTGGGAGCTGATCTGA
TAAATGCACTTCAAAGGGAGGGAAGGCTAGGTCTTTCCCATGTTGGTATGGCCGAGCATAAAAGA
TTTGAAAATGAAGTCAAAATAAGAAAAGGTAGAGAGAAAACTGAACGAAAGCGGTAGCCCCCGTC
AGGGCAAGTGGTAAACTCTAAAAGGAAAGATGGAAACTGGGAGAATTCCGCTCTGTTAAGAGAGA
GAGAGAACTAACGAAAATTGGAGACTGACGGAAGGAAAGGGGTTC
Right flanking sequence: Indices 187212 -- 187711
GAAAACTCTTTCCGTATAGGCCAGAAAACAGCTTGCTTAGAGAAAGACTGACTCTCCTACGGACC
TGGTGGACCTTACAGTCGAGTTATTGCATTCCTCTCACAAACTATCAATTTCATAAGAGAAGAAA
GATCGTTTTTAGAAAAGAAAGAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACG
AGTAAGAAAGTGGTTACGCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCC
ACAAACCACTGAGAGCTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTT
TGATGAGCCTGCGTCCGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGC
TGCCCAGTCGTGCCGAGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCT
CCACTTGTCGCGTACTTCTTTAGCTGCACCGTCATCGCCGGCCGG
Found at i:206333 original size:17 final size:17
Alignment explanation
Indices: 206313--206351 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
206303 CATTTCTTTC
*
206313 ATATCTCCATTCTCATA
1 ATATATCCATTCTCATA
206330 ATATATCCATTCTCATA
1 ATATATCCATTCTCATA
206347 ATATA
1 ATATA
206352 ATAGGGAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATCCATTCTCATA
Left flanking sequence: Indices 205813 -- 206312
ATAACGCTTTTCTTCCGATCTCACAGTTCCTTTGTCCCTTGTAAAGCATTCTATCTGTGGCCACG
TGCTACTGTGGAGCTTTTGAATCGACGTCAACCAGAAGAAAGAAGAGAGCCAGAGCGCCATACCC
TTCTCGGAAGGAACCCGCCCTTGGAAGAGCTACTAGGGCATCGCATCTATGCTGAAAGAGCACAA
TCCTTGATCTAGAGGGAGCCATTCCTTACCTTAGAGGAAAAGACTTAGCCCAGTCCTCAGTTTCC
ACTTACAGAATAAATGAATCACTTTGCCACTCGACGAGGCAGATAGCTCCTCTGGTGCTACTATA
GCCTTTGTGGTTGCTTCGCTAGGAAGAGCAGCACTTATATTGCTTGGATTATCTATTCAGCACAA
GCACACCGCTGTGCTGTGGAAGAGTAAACGAACTACTATCGATGTGTTACCTAAGAGATTAGCCT
AAACGAGAAAAGGGAGTGTGCTGGACTGACCTTTGCATTTCTTTC
Right flanking sequence: Indices 206352 -- 206851
ATAGGGAGGCGCTGACCTTACAATTGTAAGAGTTAAATGACCGACTGACTTGAATCTGTTTGCCG
TTGGTCCTTATCTTTAAGATAATGTTAAGAGTGGTAAGGGCTATGGGTATAGAGCCTTGGCCAAG
AGGTTGATTGAGTCAGTAGACCTAACGTACGCTTAAAGAAAAAGACAGCTCTGATCACCCTTTAT
CTTTCTCGGACTCCAGTAATATGTGTGGGGCAAGTAAACGTCAGCAACGAGGACTTCTTATTGGG
CTTACTGCCTCTGCCTGTCTTAGGTACCCAAGGGGAGTCCTACTAATAGCCATGCTGAGCTGTCC
TTATCGTAGTCATCTTTTCCTATTATTGAACAGTTTCAACTTGCATGTGTTAAGCATAAGCTTAA
ATCTTTCGAAGCTCCACTGATTCATCAAAATGCATCCAAAAATCCCGGGATATTAGCACTTTTTC
AGGCTGTTTTGACCTCGTCAATCAAAAACAATATCTTACAACATT
Found at i:212631 original size:18 final size:18
Alignment explanation
Indices: 212592--212633 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
212582 CTGAGGCGTA
*
212592 TTCCA-CAAGACGGTACC
1 TTCCATCAAGAAGGTACC
212609 TTCCATCAAGAAGGT-CC
1 TTCCATCAAGAAGGTACC
212626 TATCCATC
1 T-TCCATC
212634 GTCTGGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (18 bp):
TTCCATCAAGAAGGTACC
Left flanking sequence: Indices 212092 -- 212591
AGAAAGACAGAAAGCATTGTTTGATCAGCCAGAAGAAAGGCTGTTCCGAAGGTTCAGTTGCACAT
GTGGTCTAAAAAAAAAGGTTACAGGTAGTGATGAGCAGCCTGCTCCTAAAGAACGGAAGGAGACT
TGTTTCTTCTCTGCGATGTTCTTGGAAACCGCGGCTTTTGCCCGCCAGCTGCGAATCATTCATTC
AGAACCGGATGGTATTTTCAGTCCAGGTATTCTCTTTCAACCTGGGTATACTTTGTACCCGTTTG
ATACGAAATTTAGTACCTGGGCAGCTAATGAAGGGTTGAGGTTTTATGAGGCTTGGCCTGGCTTG
GTGTTTGATTCCCTCGCCATGGGCTTCGACCGTTCTTCTCAACCTCTTTATTCCGGACGTTTGGC
TCAGTCCTTAGAGGGTGCCGGAAAGCGGCGTTTGTTTGTAATCGGTAACTGGTTTAAACAACGTC
TGTTATACCCCGTGCATGTGTGGGGTATGTCTGTTCTGAGGCGTA
Right flanking sequence: Indices 212634 -- 213133
GTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGG
CCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGT
CAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTG
TGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCAT
GCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGC
TTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTG
ATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTC
GCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCA
Found at i:215182 original size:15 final size:15
Alignment explanation
Indices: 215162--215191 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
215152 ACCCTTCTTA
215162 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
215177 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
215192 CAAAGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGAAAACTGGCATC
Left flanking sequence: Indices 214662 -- 215161
CAACTGTTAGAATTTCGATCGAACAAGTATTGGCATTCTGTCAGCATTTCCCCCGCGGTCAGTGA
TAGTTAGGAAAGGAAGAAAGAAAGGGTGATACACGAGAAGCTAGGTCAGGTATATATAGCGATTG
CAGATGGTGCACTAGTTTCGTATACATAGGCCCTGGTTGGTAAGGTGATAAGATCGACACATTAT
ATGCGATCTACGTTCATAGGTTCTACCTTGAAGCTCTTCTCCTTTCCTTACTCTAACAAGTAAGC
AAATAGGAATTACCTTGTGAAGCAACGTAAATTTAGTGAGTTTTGGGAGGTTAGCCTTAACACAT
CCAAATCTTCCGAAGTCAATGCGGTAGCAGCCACTGTCCCGACCTTTTCTGTCACTCCTTCCTTT
GAAAGGAGCTTTTCGCCGTTAAACTCAGCTCTTTTTCCGGCTTTACCGATTAGATCAGTTTAGAC
CTTACCTTGGGATTGGTTTTTTTCCTTTAAGGCTGACCCTTCTTA
Right flanking sequence: Indices 215192 -- 215691
CAAAGGTCCTCAACCAGGGAGAAATCGACAAATCTAGGATAAAGTCCACTTGAATCGACCAAAGG
GGAAGGAAGTATGAAAATCCAATTCTTTGACGGAAACTAAAGGCTAACCTACAAGCTAGCCTCGT
CGAATCGACTCACTCTTTTAACCTCAAAGGGAATCTGAGAAACAAGTAGATCAAGGATTCCCATG
TTGCCTATGGTGTCTTGCGAATTCCTAGGAATGTTAGGAATGGGAGAACCAGTAATCCCAGTAAT
CCCAGGAATAGGAGGTAAGGAGATTAGTTGGTTAGGAGGGAATCCCAGCAATATTAGCAATGAGG
TGATGAGATTAGGTTTGTTTTGGTTAGGGATTAGAGGAATGGGAGAGGTAAGCCAAGTAAGGTAA
GGAGTTTTTGTTTGTAGAAAGTTCCATTTCAATCTGCCTATCTGTTTGAATCAGTTTATCCCAAG
GAAGTGTTTTACTCTTTTAATTGGTAGTTGGTTAAGGAATCCCTG
Found at i:254582 original size:19 final size:19
Alignment explanation
Indices: 254558--254596 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
254548 AAAAGGTCAA
254558 TCAGACCATTTGTAAAATC
1 TCAGACCATTTGTAAAATC
254577 TCAGACCATTTGTAAAATC
1 TCAGACCATTTGTAAAATC
254596 T
1 T
254597 GTCCTTTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (19 bp):
TCAGACCATTTGTAAAATC
Left flanking sequence: Indices 254058 -- 254557
GATGAAACTCTGAGAACTAGAAGCAAGGGAATCAAAAAAGTCTATTCTTGACGTGAACGGCCGCT
TTGTCATTAGAGTGTGAGAACCTTAAGGAGAAAGCTTTTTGATTGATTTGTTTACTCAACTCGTA
AAGGCTCATCAAACAGCGCTTTCTAGCTTTCTTCAGGATTTAGCCTGAACCGATGCCAGAGCTCT
CAGTGGTTTGTGGACTCGAACCACAGTAGGAATTTACAGTTCCGGCTCCCCAGCGGAGCGTAACC
ACTTTCTTACTCGTAAAGGCAAAGAAAAAAGGGATCCGCCTCGAATCAAAACGTTCTTTCTTTTC
TAAAAACGATCTTTCTTCTCTTATGAAATTGATAGTTTGTGAGAGGAATGCAATAACTCGACTAT
TTACATATTTGATTTCCAGCAACTGATCTTTCTATCTTTCTGCTCCATCCTTCTTCTAAAACTGC
TATCCTTTCAGATTGACTCCCTACTCATAAGAATAAAAAGGTCAA
Right flanking sequence: Indices 254597 -- 255096
GTCCTTTGGCTAAACAAAAACACTTACCTTTTCAATCTCATAATAACATTTGTGATGAACCTTTT
GATCTGATTCACATTGACATTTTGGGCCCTTTTTCAGTTGAAACCACAGAACAGAAGGTTTTCGA
TATTTTTGAACCATAATGGATGATCATTCAAGGGCTACTTGGGTCTATCTTCTCAAAAGTCAAAG
AGAGTTTCTTCCCGAAGGGGGATGGAAAAATATAGCAACTCGTACTACCTAATATTCCGCTCTAG
GCCTAGTGCTACTCGCATTAGATTCAACCATCTGCCTAGATCGGAAAGAGATAGCTCTAAGAGCA
GCTTTCCCCGTTCTGACCGGTGCATCCAGAGCAGAGCAACCTCCCCTCTCAGATTTTTTTGAGTT
AGCCATAGGTAAGAAAGATGCCCACTCTTTTGACCTGCCTTACCCTTCAAGGCAGTTCTTCCTTA
TGAAGGTGGGACTGTAAAAGAACCGGTTGAAGTACCAACTCCAAC
Found at i:257104 original size:14 final size:14
Alignment explanation
Indices: 257085--257114 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
257075 ATTAATACGT
257085 CGCTTACCCGCCTC
1 CGCTTACCCGCCTC
257099 CGCTTACCCGCCTC
1 CGCTTACCCGCCTC
257113 CG
1 CG
257115 TCGCTTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.57, G:0.17, T:0.20
Consensus pattern (14 bp):
CGCTTACCCGCCTC
Left flanking sequence: Indices 256585 -- 257084
TTGCTAGCTCGGTAGGCGCACAGGCGCGGGTTCCGGTTGAAGAGTCAAATTCTCCTTCTTGTTTT
TATTGTGAGAATCTTTCTCTATACTCTATATAAGATGCCATCTGTTTTCTTTACTCGTTTCCTCC
TTAGCTTTGAATCTATCTGTGACTGTTCTCCTTCTTCTCTAAGGTCTGTTCCTTTGTTCCTTCTT
TGTGCCTTCATTTGCTTTCTTTTGTTTGACTGTTAACTTAAGTATCTACCTTCTTCCTTTGGTTT
CTTGTAGTTCTATCAGTTAGTTCTTCAATGGTTAGCTCTGCCTGAGCTGGAGTTGTCCCTCCAGC
GAGAGTTGCTTTCTTCCTTGCTTGATCGGTAGGAGTTGCCGAGATAGCAGGTATTAGCTGTTAGC
CGTCGGACTCATTTAAAGGAGTCCTATCGGGCTACACTAGTCTAAGGGCAGTTGAGTAACCGATT
CCTACGCTTCCTCCGCTTACCTCCGTCGCTTAACTATTAATACGT
Right flanking sequence: Indices 257115 -- 257614
TCGCTTGTTATCTGCTTCCCTTAGCTAAAACGTTAGGCGCTAGTGAAAGCCTTCACTCTCTTATA
TTTACGTACACGTGGGAAGAAGACCTAGTAATTGAGTGACAGCATTCCTGGACCAATTCTATAAA
CAGCCAATCAGGCATATCATGGTACAGGTGAAAGAAACTTATCCAATACAGATCTTATCACCTGC
CCATCAACGAAAAACCGTCTGCTCCTCTCGTGCGTGTAGGAATAATCAAAAGAGGAGACAGCATG
CCTATTATTAAGAACCCAATTCTACTAAAAACGATAACAACGATTCGAGGTTCTCAATCAAGGCA
GAAAGCAAGAAACCCATCCAGCTAGGAGGAAAGCAAATCAAGCTATGGAGACCAATCAGACATCT
AGATTCTATAGTACGCGTATGTGTACGTACCCAGGCTAAAACAGCAAATCAAACTTGGCTATCGT
TTGAGAGCAACCTATCGCTAAACCGAGACCGAGATAGAGAAAGAG
Found at i:260960 original size:31 final size:30
Alignment explanation
Indices: 260925--260990 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 30
260915 TTTCTTGTTT
260925 ACTCGAACAGCAAAGGAGAGGTGCTTTAGCA
1 ACTCGAACAG-AAAGGAGAGGTGCTTTAGCA
*
260956 ACTCG-ACTGAAAGGAGAGGTGCTTTAGCA
1 ACTCGAACAGAAAGGAGAGGTGCTTTAGCA
260985 ACTCGA
1 ACTCGA
260991 CTGAAAAGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 25 0.76
30 3 0.09
31 5 0.15
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (30 bp):
ACTCGAACAGAAAGGAGAGGTGCTTTAGCA
Left flanking sequence: Indices 260425 -- 260924
GATTCCTCGAGAACTCGAAGTTCAAACGGATCCTCCTTCCACGTGGATGAGCTCTCCGCCCCGTT
AGGGCCCGTAGAAGGAAGTGCTCCCCCTCCTACTGCAGCCCATATAATGGGCTCCAACAGGGGCA
AAGCCTGACCACCCAGTAGGTGGATGACTTTGATCCGTATCAAAGATATTACCACGGCGATGAAA
AAGACCAAGAAGAGATTGAGAATCTCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAA
TAAAAATAGGAAGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTT
CTGATCCTAGAAAACGTTTGAAAAAACCTGCTACGGAACTACCGAGCAGGAGTAACAATAGTCGA
ACTAGATTTTTAATAACATAATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCTTTATCAGAG
AGGGGCCCCGTTAGGGGTATTTAGTAACTCGAGCATTTCTTGTTT
Right flanking sequence: Indices 260991 -- 261490
CTGAAAAGGCGTTCCTCGGAGTGACTCGAGCACTTGTTTAGAGAGGTGCTTTAGCAACTCGACTG
AAAGGAGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATT
ATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTT
TTTTATATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGAT
TCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCA
CTCCCCGAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAG
ATATCCCCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACG
AAAGGGACAAAAAAAAAAAAAAGCCATTCTTCATATACCTCAGCT
Found at i:260970 original size:29 final size:29
Alignment explanation
Indices: 260936--260996 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
260926 CTCGAACAGC
260936 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
260965 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
260994 AAA
1 AAA
260997 AGGCGTTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (29 bp):
AAAGGAGAGGTGCTTTAGCAACTCGACTG
Left flanking sequence: Indices 260436 -- 260935
AACTCGAAGTTCAAACGGATCCTCCTTCCACGTGGATGAGCTCTCCGCCCCGTTAGGGCCCGTAG
AAGGAAGTGCTCCCCCTCCTACTGCAGCCCATATAATGGGCTCCAACAGGGGCAAAGCCTGACCA
CCCAGTAGGTGGATGACTTTGATCCGTATCAAAGATATTACCACGGCGATGAAAAAGACCAAGAA
GAGATTGAGAATCTCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAATAAAAATAGGA
AGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTTCTGATCCTAGA
AAACGTTTGAAAAAACCTGCTACGGAACTACCGAGCAGGAGTAACAATAGTCGAACTAGATTTTT
AATAACATAATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCTTTATCAGAGAGGGGCCCCGT
TAGGGGTATTTAGTAACTCGAGCATTTCTTGTTTACTCGAACAGC
Right flanking sequence: Indices 260997 -- 261496
AGGCGTTCCTCGGAGTGACTCGAGCACTTGTTTAGAGAGGTGCTTTAGCAACTCGACTGAAAGGA
GAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATTATGTTA
CCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTTTTTTAT
ATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGATTCGAAC
CTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCACTCCCC
GAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAGATATCC
CCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACGAAAGGG
ACAAAAAAAAAAAAAAGCCATTCTTCATATACCTCAGCTCCGAGA
Found at i:281932 original size:27 final size:28
Alignment explanation
Indices: 281873--281946 Score: 132
Period size: 27 Copynumber: 2.7 Consensus size: 28
281863 AAAGAGCCTA
*
281873 GCTTTCTTGGTTTGATGAGCTTATACTC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
281901 GCTTTCTTGGTTTGATGAGC-TATACAC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
281928 GCTTTCTTGGTTTGATGAG
1 GCTTTCTTGGTTTGATGAG
281947 TGAGTAACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (28 bp):
GCTTTCTTGGTTTGATGAGCTTATACAC
Left flanking sequence: Indices 281373 -- 281872
TACCCTTTCTTTCTATGAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGAACCTTGCTGCTTAC
TTGCTATATTCCCGCGTTCTTGCATGGCTCGCGCGCAACCCCGCCCTGCTTCTCCCTTCCCCCTT
ACCGTCCAAAACTCAGAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCG
GCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGA
GCTGACGACTACAGGGGAAGCTCTCATTAATTAGTTGATGAGGGGAAGCGGCTGACAGCAGTCCC
TGAGCTAAGCCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACT
GCAATAATTCTTGCTAAGAAGAACGCCCACCCCTCTCTGTTTGATAACAGTTTCCTCCTAGTTTG
CTTGAAACAGATAAGCTTGCCCAACTGCAACAAAGAAAGAGCCTA
Right flanking sequence: Indices 281947 -- 282446
TGAGTAACAACTTCTGAGTTGACTTGGAAGAAACCATTGTGGATTGTTGTAGTTCCGTGCTAATT
AACAGGTTCTTTGCCTTTATTTAAAACAGGTTTGGCGTTGCATTCATCTAGGCTGTAGCCTCTCA
TACGACAAGAAGGATTTAGATCGGGGGATTTTCGTAAATGATTCGTTGCCAGCGCCCAAACTTTC
CCATCCCCAGCCAAATACGATTGGGCATATCCTTCAAGAGATCAACCAATACGCATACTGCGCAA
CACTAGGGTGGTCGTAGATCAGCTAACTGGGGCGTCCATTGGTGGAACTCAGCCGGAACCTCAAT
ACTGTGTAGTGCCCGAAGAATTACTACGTAATTTTGTCTAGTTTAGTGATAGCAGTAGGTCGGTT
CGCTGTGGCTCTAATGCCGGCGATGAAGCAAACAAATAGGGTGTGATAACATTCAGACCTATTTG
AGACTAAGAGGGGCTGGTTACCGGAGGTATTCCTGTCAGCCTTGT
Found at i:294713 original size:12 final size:12
Alignment explanation
Indices: 294696--294720 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
294686 AGTGAATGAT
294696 TGAACTGATAGC
1 TGAACTGATAGC
294708 TGAACTGATAGC
1 TGAACTGATAGC
294720 T
1 T
294721 TCAAAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TGAACTGATAGC
Left flanking sequence: Indices 294196 -- 294695
GGGGCGAAGCCCACACCACACAGTTGTTCAATTTGAATGTCATTCTCGACTTTATCCCTTCTCTA
ATCTAATATCTAATAGGGCTGGGTGTTTGATTTCAGGCCCTTTCGAGGAGGGTATCTGATTGGTT
AATGTCAGCCCGGCTCGCATGGACTTCCGGTGTTTCTTAGTTGACAACTGCATTGAAATTAGAAG
TTCTCCAGTTACTCCTGCACAAGCAACAGCAGTTATGGATCTGATTGAGGAGCGCTAGGAAGAAT
GGATCGAACGAGAAGGATTAGAGCAAGTTCCGTTCTGGGTGAATCAAGAAAGGAAGTTCCGGGAG
TTCTGTGTCCCGAAGAGAGAAAGCTCACTAAGAACTAGCTTGGCCGTAGTTCCTCGTAGGAGATA
GACGGACCAAAGGCGTTCCTCGAGAAAGGCTGACCAATTGCAGATTCCGAAAAGAAATAATTTCA
CTGTCCTAGTTATGCGAGACGCCCTCTTCCTAGCGAGTGAATGAT
Right flanking sequence: Indices 294721 -- 295220
TCAAAAGGTGACTCTTCTCTTTCCTTTTGGTTAGCTTGCAATACAATGCGGATCAGCGAGACTTG
CTTGAATGCTTGCTAGACTTCCTTATTCTTCTTTTGAAAGCAGCTTTTACTCAGATAGCTACTTC
TGCAAGCTAGTAGGTTCAGTAGTCACAACTGATTACCCTCTTGTTTGGAACCTTGAGACGAAGGC
TAGCTCTTTCCCTCTCCTTTTAGTTTCTTAGTCAAAATGGGTGATGGTATTCTGCCTAAATAGTA
GACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTCAATTCTGACACAA
GGAACTTATACTTATTAGATCTAATAAGTACATTAGACCTAATAGAATTATTTTGCTGTATCCAG
ACTAATACCAATCCAACCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACTACT
TGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATGTT
Found at i:298374 original size:31 final size:31
Alignment explanation
Indices: 298336--298416 Score: 153
Period size: 31 Copynumber: 2.6 Consensus size: 31
298326 CGCCCTTGTC
298336 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
1 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
298367 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
1 CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
*
298398 CCTCTCCTTTTAGTCGAGT
1 CCTCTCCTTTCAGTCGAGT
298417 AAGAAATACC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.15, C:0.30, G:0.16, T:0.40
Consensus pattern (31 bp):
CCTCTCCTTTCAGTCGAGTTTGTGTTCACAA
Left flanking sequence: Indices 297836 -- 298335
TCATCACTACCTCGTAAGGGCATTGAGACCATAGCATGTTACACGAGGAAAAAAAACCTTGTAGT
GTTGTCATACAGCTGCCCGCCTAGAAGAGCCACTCGCTCTGTAGTGTTGTCACACAAGATAAGCA
CGCCGCCCGCCTGCTGGCCGGGCGAATCGAAGTTCTCTTCCGGTCAACTGTCCACCCAGTCAAGT
GCAAAAAACACAGTAGAATCACGCAACGCACGCTGCTGGTGTGCTTCCTGCCCGCGAGGAAAGAA
AGAAGAGCGACAAGGTTGAGTTCTGATTTGACTGTTTGCAGCATGGGAGCAGATTACCCAAAAAA
TCCCTGGGAACAATGAAAAAAAAAAGATATCTCGGTAACAAAAACCATAGGGGGCTGTATTGGCG
AGATCCAACGGTGAACAGCTGCCCAAAATCAAAACCGCCTGGAAGTCCGAGGACCTTTAGTACCG
TACCCCCAACCAGCAGCCTTCGCGCCAAGCAAGACCGCCCTTGTC
Right flanking sequence: Indices 298417 -- 298916
AAGAAATACCTCGGGAAGTAGGGCTCCTATTGACTAAAGATTGGTTCTTCGCTTTCCTTTAGAAT
GAAAGTAGCTATGAAGCCCCTACCTACAACTTACTTTGTTTGATTCAAAAGGCGAACAGCCCCCC
CAACTAGTCGTATGGGGTGGGGTTCTTGTGGTAAGCTGCCTTGGATATGATAAATTCCTAAAAAA
AGGCAAAGTCCGCTATTAGACGAAGATCTTCCTATCAATAGATAGGAATTAGTGTTCGATATAGG
GGATAGGATCTATCTGCTCTCTCTTAAAAAAAATTGAGAGAGCAGATATAACGATATAAAATCGG
AAGGATAGATAGACATCTAAAGAAAGGGATGTCTATTCTATTCCTCTTTTTTTTATAGAAAGAAA
AGATATCTCGTTCATCTATCTTTTGTTTATTTATCATTGATTCTATCTATGAATCAAGTCGAATT
CGTTTTTGGCCGAAGCCCCGAATGGATTGGATCGTTTCCGCCAAC
Found at i:301944 original size:22 final size:22
Alignment explanation
Indices: 301916--301964 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
301906 CTCGCTACGC
301916 TCGAGATCTTTGAACCTTTCAG
1 TCGAGATCTTTGAACCTTTCAG
*
301938 TCGAGATCTTTGAACCTTTTAG
1 TCGAGATCTTTGAACCTTTCAG
301960 TCGAG
1 TCGAG
301965 TGCCTTCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
TCGAGATCTTTGAACCTTTCAG
Left flanking sequence: Indices 301416 -- 301915
AGCTAACCCCTGTCCAGTGCCTGGCAGAGCTAAGGGGCTTCAATCCTTATTCCTTATCCCCATCT
TCGCCCAGGCTAACGGGGCCTTACTTATTCAGGGGGGAGCCCCGAGAAGCACTGTTGAGAAGAAG
ATCCTAGGCCCCTCTTCATTCTCTACAGGGTTTCTTTCTTCAATATATATATAGGTGACAACGAG
CGAGGCAGAGATGGAAGAGATCAAAGACGAGAATAAGAAGCCAGTAAACTTCTTCCTTTTTGATC
ATTTTGTTTGATAGAGGGGGATAGAAAAAATGGACAAAACTGACTCGCATTTCTCATCGAACAAA
TACGAAAAAAGAATCATATTGAAAACTGAAACCTCACCTCTCCTCTCGTTTCACTCTCGAGGAAC
GCCTTACAGTCGAGCTCCTTTGTCACTCCGTGCCTCTCTAGACAAGTGCTCGAGTCATGACTCCG
AGGAACGCCTTTTCAGTCGAGTTGCTAAAGCACCTCTCGCTACGC
Right flanking sequence: Indices 301965 -- 302464
TGCCTTCGGCCCTCTCCCACCAAGGATAAGGTCTCATTAATTAGTTGATGAGGGGTCGAGTTACT
GCGTTCCTAACCCAACTCCCTCCTTCTCCGAGCTTTGTATTATAAGTGATCCGAACCTGCCCGGA
GTGAGCCTCCCATAGAGGCAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTTGGAG
AGGACTCAGCTGTTAGTTAGTATCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTATTTTATTAT
ATACGCTTAGTGAAAAGAATGTTTTTTGATACACCTAGGACATGGATTCTATATGAACCAATGGA
TCGTAATAAGTCGTTACTACTAGCAATGACTTCCTTTTTCATTACTTCATCCTTGCTATACCCCT
CTCCTTTGTTCTCAGTTACTCATCAAATGGCACTCAGTTCATATCTTTAAGTTCGATCATTGACA
AGGTTCAAAGAAAGGGTGGGCCGTCGGTTTGAATCCAATATTATG
Found at i:304383 original size:36 final size:36
Alignment explanation
Indices: 304336--304422 Score: 149
Period size: 36 Copynumber: 2.4 Consensus size: 36
304326 AAAGCCTGAA
304336 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
304372 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
* *
304408 AG-TGATGGTTGACTC
1 AGAAGAAGGTTGACTC
304423 ATGAAAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 11 0.22
36 38 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (36 bp):
AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
Left flanking sequence: Indices 303836 -- 304335
TCTTAGGAGTAGATGCCGGGGGGAGAAGGAATTCTACGACTGATTGAGCCAACAAATCCTAGCTA
GAATCTAATCTGGAAAGAACTTGGAACTCTCAACCATAGCTTTGATTTGCTTTTCTTATTGGCAG
AAGTCAAGGCGATTTTAATCTCAAAGAGGCCGATAGGACCAGTATCGGACGAGATATTGACAAAA
GGAAAATCATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTC
TTGTATGAGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCC
AAGAGGAGTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGA
CAATCTGAAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTG
AAACCAACAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAA
Right flanking sequence: Indices 304423 -- 304922
ATGAAAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCT
CTCCTTTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGTATGTTAGTGTTCAGT
ATATCATGTTAGTGTTCAGTATAGCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAA
GGCGGAAGCTGCGGGTTCGAGCCCCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAAT
CTCTCATCAGTTACGAAATATATAGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCT
CAGTCTCTAGGAATTCCTAAGCGTTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGG
AGAGCAAGCGCCCTACCCGAGTCTCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGA
TCGAAACCTAAAGCCAAGTGCATCGATCGGTTTCCTTGCGTTGGG
Found at i:304563 original size:20 final size:20
Alignment explanation
Indices: 304538--304575 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
304528 GTGCTCGAGT
304538 ATGTTAGTGTTCAGTATATC
1 ATGTTAGTGTTCAGTATATC
304558 ATGTTAGTGTTCAGTATA
1 ATGTTAGTGTTCAGTATA
304576 GCCGGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
ATGTTAGTGTTCAGTATATC
Left flanking sequence: Indices 304038 -- 304537
CATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTATG
AGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCCAAGAGGA
GTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATCTG
AAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACCAA
CAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAAAGAAGAAGGTTGACTCGGCAATCTCAA
TTTCGTATGAGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATGAGTGATGGTTGACTCATGAA
AGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCTCTCCT
TTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGT
Right flanking sequence: Indices 304576 -- 305075
GCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCC
CCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAATCTCTCATCAGTTACGAAATATAT
AGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCTCAGTCTCTAGGAATTCCTAAGCG
TTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGGAGAGCAAGCGCCCTACCCGAGTC
TCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGATCGAAACCTAAAGCCAAGTGCAT
CGATCGGTTTCCTTGCGTTGGGAGGGAGATTGAATGAACGCTTGAAAGCTAGCGGGGACTCAGAG
AGAAGAGAGCCAGGGATATCCAACCCAGGAATCGCACGCAGGCTTCTCGCCCCCTTTCTCTGACG
AGGGCGAAGCAGAGATCGAATGCTTCCAAAGCAGGGAAAAGAAGA
Found at i:321755 original size:12 final size:12
Alignment explanation
Indices: 321738--321764 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
321728 GAGGTTCCCT
321738 CTCGAGGAACGC
1 CTCGAGGAACGC
321750 CTCGAGGAACGC
1 CTCGAGGAACGC
321762 CTC
1 CTC
321765 TTCTCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11
Consensus pattern (12 bp):
CTCGAGGAACGC
Left flanking sequence: Indices 321238 -- 321737
CCATGCCCCACTATACTTTCTTCTAAGCCAGCTTTTCACTCTTTGTTTTCGTATCATCTCATTGG
ACTTATTTCAAACAAACTCGTTACACTCGCACCTGATACACGGGAACGAAGAAAACTACATGGGG
AGCACGCTTACACCTGCAAGAACTAAGGGTCCAGACCAAGCACAGACAGATAGAACCAGACATAA
AAAATCTTCCTTTGCACAATGCCTATCAGATATGGAAGGAGGATCTTTCAAGAGAAACTTCCATT
TTATTTTCTAGCTCCGAGAGCTACTTTAATGGCTTGTGCCCATAACAAGTAGTTATGACCATTCA
ACTTTACAGAGGTAATCTGCATACTGACCTGATCAGATGAAGTGTTGGAGGCGGATTTATTTGAG
TTAGAATCAGCCATGACGAATAACGTTGAGAAAGACCACCCAAGAAAGAATAAAGAAGCAACCCC
CACAACCATGGAGAATATGGGAGCAAGCCTAAGAAGAGGTTCCCT
Right flanking sequence: Indices 321765 -- 322264
TTCTCATTATATGATTTGTGTGAACACAGTAAAGTCCCACCATAAGCATTCTCTGCATCTCCACT
GCATTAAATGAAACTAAACGTCCCTTTCAACTTTGGATCAACTGCCTCAATCAGTTTCCCTTTCT
CCCAGTAGCTCCATACCAATCAACAAGCACCGTACCAGCATCATCCGACAGGCCTTTTCCCTGTA
GCTACCTCTAGCACCACTAGACCGAAGCTGTAAACATTTCTGTGATGGAACACCATAATAAACAT
ATTAAGGAGCAAGATCTCCCATTTTCCCAGCTGGTATTGTAGCTTCCCTGGTTATAGAACTATGT
TCATAGACTTCTGCCTAAATCTCCTAGCTTGGCATTGAATTCTGCATCAAGCATTATATTTCAAG
TCTTAACTAACGTCCCTATGAATTCTTTCTCTCTCACATTCTGAATGCAGATATGATAGAGCAGA
CGCAACTCCGAGAACTAGATTCAACCTTTGCTTTCTTTTCCTCTG
Found at i:350774 original size:21 final size:21
Alignment explanation
Indices: 350750--350806 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
350740 AAGGACAGAG
350750 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
350771 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
350792 AACAGATAACAACAG
1 AACAGATAACAACAG
350807 TAGGAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (21 bp):
AACAGATAACAACAGCATATT
Left flanking sequence: Indices 350250 -- 350749
AAGCAGACAAGCTGGTGGATCATCTGATCTTGAAATAGGTCATCCCAGCTATCCCGCCCGATCTT
TTCTCTCTTTATTTCGTCAGGTATCTGAATCATACAATTCCTCGGATGTAGCTTTTCACATTGGA
CCAAAACAAGGCCCGGAAACCCCGCTAGCTTTGTTGATAGAAAGTTAGCTTCCCGTGCTTGACTA
GTAGGGCTAATGAACGACCCTTAACTATGGAATGTTACGCCTTTCCTCGTTTACTCACAACGTAA
TCAACTCCATTGGTTATTTTCCCGGGGGGAACACCTATAGCCCCAATAGACTGATTTAGTAGGTA
TGATGTATTACTAGGAGTCTCTAAGTTCCTGCTTTGGTTGTCCCTGTCCGGGCTAAGCGGAGTTT
AGCTCCGGCCGTTAATAAGAGCTTCCCTCCATTCCTTCACTACACATTCAAGCATAGGAACAGAA
GCTACGCTAACAACCTATTCCCACCTAACAACAGTAAGGACAGAG
Right flanking sequence: Indices 350807 -- 351306
TAGGAATATAGCCCTATAACAACAGCTAATAGCAGTAAGGAGATAACAAACAATCCATCAACGCT
ATAACCATACTATAACAGCCAGCACTCGGTACACAACATACAGTAGCAGCAGGAACTAATATAGG
TTAGTCGTCAGAGAAAAACCTATATTAGAAAGAAAGCTACTTCTCGGCCGGAAAGTACACTTCAA
AGAGAGGAGAGCAGAACAAAGGTAATGCTACCCGAACATTGAAGCCAGTCCCGGACAACCCGGAA
GGAAAGGGAAGACAGAACGACAATCACCGGAGGGATACGTACGGTATACGGGCCCTTCTCAGTCC
GCCCACAAAGAAGAAAGGAAAGGAGCTGCAACAGCTCAGCAAATCATAGTTGGATTCGGGGATAC
AACTATCAGGAAGAAAGCAGCACTTCCACGCAACAATAGAAGTATCGAGAAAGCAGCCCGTAATA
CAGACACAACCAAGGAAAGGGAAGCGGACAAAGGACGCATTCCCA
Done.