Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_016123
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 219766
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Found at i:4192 original size:3 final size:3
Alignment explanation
Indices: 4184--4208 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4174 CGTGCGCCCG
4184 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
4209 AAGAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Left flanking sequence: Indices 3684 -- 4183
CTAACCTTGAACTGACCCTTCAACTGACTAGGCGCTTGGGAATTCTGAAACCTCCCCCTTTTTCT
TTTGAGACCTACTTCCTCCTTGCTTGAACCTTTGCGACGACTATGGCACCTTTTGGCTTGTACTC
CTCGAGGAACGCCTTATGCCTTAGGAAAGAGAGATGCTAGCTCTTCCTGTCTTCCAGTGGGGTAA
GCAGAAGTGATCAACGAAGACCAAAAAGCTATTATGTTATATAAAGCACAGCTGCCATTTCATTT
CCTTTGCTACCGGCTTCTTTCTTTCTTTTTGTTCAAATCAATCAAGGATCGAAGAGATCTATCTT
TCCGGCTTAGCCGAACTTCTCACCTGGTATGTCCTAGTTCTTTGTTCATGCTGCTAACTCTGAGT
TTTGTCCTACTTCTGATTTTGGTTTTCGTATCATGGATCTTGGTTCGCGCTTTATGGAATTTTCC
CCCTCTCCGTCATCCACATGATGCTAAATCTTTCTCGTGCGCCCG
Right flanking sequence: Indices 4209 -- 4708
AAGAAATAAAAGAAAGGATAAAAGAAAGGCGAAGGAGGATTTCTTGAGAAATCTTGTAGTTGAGG
AAGTGGAAAAGTATCTAGACAAATATAAAAAAAATTTCATGTCCGAGTTCCCTCCGAAGTCACCC
TTATATAGAAACGACAAGTTTCTTGAGCAAGGTGAGCGCTCAACTTCTACAGGATGCCGTATTGC
CAAATACGGCAGACCCGGCAGCTATGCAATTACTTCATTCAGTCCACAATAATTTGGTGTCCGAT
TTTCGGCTAGTGGACAGCTATACCAATAATCCTCTATACAGTTGTATAAGATTTTTTCTAAAGGA
TTATCGGTGAGCAAGAATTCAAATGTAGTTTTTAGTTTCGTTAGTTAACCTACCTTTTTCTTTTG
GTGGTGAGTTTCCTTTTTTATTTTTTTCGCTATGCGCCGCTACGCCAGCAAGGAGTGCCACGCAC
AAGCAGAGCGAAAACAAACAAAGCAGGGTATTCGTTGGGGGAAAT
Found at i:28170 original size:29 final size:29
Alignment explanation
Indices: 28136--28225 Score: 171
Period size: 29 Copynumber: 3.1 Consensus size: 29
28126 CTCGAACAGC
28136 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
28165 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
*
28194 AAAGGAGAGGTACTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
28223 AAA
1 AAA
28226 AGGCGTTCCT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (29 bp):
AAAGGAGAGGTGCTTTAGCAACTCGACTG
Left flanking sequence: Indices 27636 -- 28135
CGAATCTTCTAGCATGTCGGAAGTATACGTAAACCACTGAGAAGAGGCCTCGGTTTGGTGATTCA
CTACCTCCCCAGACGAACCCGTCACAGCATACCATAGAAAGGGCCCCAACAGGGGCAAAGCCGGA
CTCACTAGGTGGATGACTTCGATCCGTATCAAAGATCCCACGAACCCAGCGGAAAAGACCAAGAA
GAGATTGAGAATCTCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAATAAAAATAGGA
AGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTTCTGATCCTAGA
AAACGTTTGAAAAAACCTGCTACGGAACTACCGAGCAGGAGTAACAATAGTCGAACTAGATTGTT
AATAACATAATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCTTTATCAGAGAGGGGCCCCGT
TAGGGGTATTTAGTAACTCGAGCATTTCTTGTTTACTCGAACAGC
Right flanking sequence: Indices 28226 -- 28725
AGGCGTTCCTCGGAGTGACTCGAGCACTTGTCTAGAGAGGTGCTTTAGCAACTCGACTGAAAGGA
GAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATTATGTTA
CCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTTTTTTAT
ATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGATTCGAAC
CTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCACTCCCC
GAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAGATATCC
CCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACGAAAGGG
ACAAAAAAAAAAAAAAAAGCCATTCTTCATATACCTCAGCTCCGA
Found at i:49161 original size:27 final size:28
Alignment explanation
Indices: 49102--49175 Score: 132
Period size: 27 Copynumber: 2.7 Consensus size: 28
49092 AAAGAGCCTA
*
49102 GCTTTCTTGGTTTGATGAGCTTATACTC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
49130 GCTTTCTTGGTTTGATGAGC-TATACAC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
49157 GCTTTCTTGGTTTGATGAG
1 GCTTTCTTGGTTTGATGAG
49176 TGAGTAACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (28 bp):
GCTTTCTTGGTTTGATGAGCTTATACAC
Left flanking sequence: Indices 48602 -- 49101
TACCCTTTCTTTCTATGAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGAACCTTGCTGCTTAC
TTGCTATATTCCCGCGTTCTTGCATGGCTCGCGCGCAACCCCGCCCTGCTTCTCCCTTCCCCCTT
ACCGTCCAAAACTCAGAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCG
GCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGA
GCTGACGACTACAGGGGAAGCTCTCATTAATTAGTTGATGAGGGGAAGCGGCTGACAGCAGTCCC
TGAGCTAAGCCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACT
GCAATAATTCTTGCTAAGAAGAACGCCCACCCCTCTCTGTTTGATAACAGTTTCCTCCTAGTTTG
CTTGAAACAGATAAGCTTGCCCAACTGCAACAAAGAAAGAGCCTA
Right flanking sequence: Indices 49176 -- 49675
TGAGTAACAACTTCTGAGTTGACTTGGAAGAAACCATTGTGGATTGTTGTAGTTCCGTGCTAATT
AACAGGTTCTTTGCCTTTATTTAAAACAGGTTTGGCGTTGCATTCATCTAGGCTGTAGCCTCTCA
TACGACAAGAAGGATTTAGATCGGGGGATTTTCGTAAATGATTCGTTGCCAGCGCCCAAACTTTC
CCATCCCCAGCCAAATACGATTGGGCATATCCTTCAAGAGATCAACCAATACGCATACTGCGCAA
CACTAGGGTGGTCGTAGATCAGCTAACTGGGGCGTCCATTGGTGGAACTCAGCCGGAACCTCAAT
ACTGTGTAGTGCCCGAAGAATTACTACGTAATTTTGTCTAGTTTAGTGATAGCAGTAGGTCGGTT
CGCTGTGGCTCTAATGCCGGCGATGAAGCAAACAAATAGGGTGTGATAACATTCAGACCTATTTG
AGACTAAGAGGGGCTGGTTACCGGAGGTATTCCTGTCAGCCTTGT
Found at i:61941 original size:12 final size:12
Alignment explanation
Indices: 61924--61948 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61914 AGTGAATGAT
61924 TGAACTGATAGC
1 TGAACTGATAGC
61936 TGAACTGATAGC
1 TGAACTGATAGC
61948 T
1 T
61949 TCAAAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TGAACTGATAGC
Left flanking sequence: Indices 61424 -- 61923
GGGGCGAAGCCCACACCACACAGTTGTTCAATTTGAATGTCATTCTCGACTTTATCCCTTCTCTA
ATCTAATATCTAATAGGGCTGGGTGTTTGATTTCAGGCCCTTTCGAGGAGGGTATCTGATTGGTT
AATGTCAGCCCGGCTCGCATGGACTTCCGGTGTTTCTTAGTTGACAACTGCATTGAAATTAGAAG
TTCTCCAGTTACTCCTGCACAAGCAACAGCAGTTATGGATCTGATTGAGGAGCGCTAGGAAGAAT
GGATCGAACGAGAAGGATTAGAGCAAGTTCCGTTCTGGGTGAATCAAGAAAGGAAGTTCCGGGAG
TTCTGTGTCCCGAAGAGAGAAAGCTCACTAAGAACTAGCTTGGCCGTAGTTCCTCGTAGGAGATA
GACGGACCAAAGGCGTTCCTCGAGAAAGGCTGACCAATTGCAGATTCCGAAAAGAAATAATTTCA
CTGTCCTAGTTATGCGAGACGCCCTCTTCCTAGCGAGTGAATGAT
Right flanking sequence: Indices 61949 -- 62448
TCAAAAGGTGACTCTTCTCTTTCCTTTTGGTTAGCTTGCAATACAATGCGGATCAGCGAGACTTG
CTTGAATGCTTGCTAGACTTCCTTATTCTTCTTTTGAAAGCAGCTTTTACTCAGATAGCTACTTC
TGCAAGCTAGTAGGTTCAGTAGTCACAACTGATTACCCTCTTGTTTGGAACCTTGAGACGAAGGC
TAGCTCTTTCCCTCTCCTTTTAGTTTCTTAGTCAAAATGGGTGATGGTATTCTGCCTAAATAGTA
GACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTCAATTCTGACACAA
GGAACTTATACTTATTAGATCTAATAAGTACATTAGACCTAATAGAATTATTTTGCTGTATCCAG
ACTAATACCAATCCAACCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACTACT
TGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATGTT
Found at i:69141 original size:22 final size:22
Alignment explanation
Indices: 69113--69161 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
69103 CTCGCTACGC
69113 TCGAGATCTTTGAACCTTTCAG
1 TCGAGATCTTTGAACCTTTCAG
*
69135 TCGAGATCTTTGAACCTTTTAG
1 TCGAGATCTTTGAACCTTTCAG
69157 TCGAG
1 TCGAG
69162 TGCCTTCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
TCGAGATCTTTGAACCTTTCAG
Left flanking sequence: Indices 68613 -- 69112
GAGCTAACCCCTGTCCAGTGCCTGGCAGAGCTAAGGGGCTTCAATCCTTATTCCTTATCCCCATC
TTCGCCCAGGCTAACGGGGCCTTACTTATTCAGGGGGGAGCCCCGAGAAGCACTGTTGAGAAGAA
GATCCTAGGCCCCTCTTCATTCTCTACAGGGTTTCTTTCTTCAATATATATATAGGTGACAACGA
GCGAGGCAGAGATGGAAGAGATCAAAGACGAGAATAAGAAGCCAGTAAACTTCTTCCTTTTTGAT
CATTTTGTTTGATAGAGGGGGATAGAAAAAATGGACAAAACTGACTCGCATTTCTCATCGAACAA
ATACGAAAAAGAATCATATTGAAAACTGAAACCTCACCTCTCCTCTCGTTTCACTCTCGAGGAAC
GCCTTACAGTCGAGCTCCTTTGTCACTCCGTGCCTCTCTAGACAAGTGCTCGAGTCATGACTCCG
AGGAACGCCTTTTCAGTCGAGTTGCTAAAGCACCTCTCGCTACGC
Right flanking sequence: Indices 69162 -- 69661
TGCCTTCGGCCCTCTCCCACCAAGGATAAGGTCTCATTAATTAGTTGATGAGGGGTCGAGTTACT
GCGTTCCTAACCCAACTCCCTCCTTCTCCGAGCTTTGTATTATAAGTGATCCGAACCTGCCCGGA
GTGAGCCTCCCATAGAGGCAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTTGGAG
AGGACTCAGCTGTTAGTTAGTATCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTATTTTATTAT
ATACGCTTAGTGAAAAGAATGTTTTTTGATACACCTAGGACATGGATTCTATATGAACCAATGGA
TCGTAATAAGTCGTTACTACTAGCAATGACTTCCTTTTTCATTACTTCATCCTTGCTATACCCCT
CTCCTTTGTTCTCAGTTACTCATCAAATGGCACTCAGTTCATATCTTTAAGTTCGATCATTGACA
AGGTTCAAAGAAAGGGTGGGCCGTCGGTTTGAATCCAATATTATG
Found at i:71579 original size:36 final size:36
Alignment explanation
Indices: 71532--71618 Score: 149
Period size: 36 Copynumber: 2.4 Consensus size: 36
71522 AAAGCCTGAA
71532 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
71568 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
* *
71604 AG-TGATGGTTGACTC
1 AGAAGAAGGTTGACTC
71619 ATGAAAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 11 0.22
36 38 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (36 bp):
AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
Left flanking sequence: Indices 71032 -- 71531
TCTTAGGAGTAGATGCCGGGGGGAGAAGGAATTCTACGACTGATTGAGCCAACAAATCCTAGCTA
GAATCTAATCTGGAAAGAACTTGGAACTCTCAACCATAGCTTTGATTTGCTTTTCTTATTGGCAG
AAGTCAAGGCGATTTTAATCTCAAAGAGGCCGATAGGACCAGTATCGGACGAGATATTGACAAAA
GGAAAATCATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTC
TTGTATGAGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCC
AAGAGGAGTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGA
CAATCTGAAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTG
AAACCAACAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAA
Right flanking sequence: Indices 71619 -- 72118
ATGAAAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCT
CTCCTTTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGTATGTTAGTGTTCAGT
ATATCATGTTAGTGTTCAGTATAGCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAA
GGCGGAAGCTGCGGGTTCGAGCCCCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAAT
CTCTCATCAGTTACGAAATATATAGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCT
CAGTCTCTAGGAATTCCTAAGCGTTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGG
AGAGCAAGCGCCCTACCCGAGTCTCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGA
TCGAAACCTAAAGCCAAGTGCATCGATCGGTTTCCTTGCGTTGGG
Found at i:71759 original size:20 final size:20
Alignment explanation
Indices: 71734--71771 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
71724 GTGCTCGAGT
71734 ATGTTAGTGTTCAGTATATC
1 ATGTTAGTGTTCAGTATATC
71754 ATGTTAGTGTTCAGTATA
1 ATGTTAGTGTTCAGTATA
71772 GCCGGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
ATGTTAGTGTTCAGTATATC
Left flanking sequence: Indices 71234 -- 71733
CATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTATG
AGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCCAAGAGGA
GTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATCTG
AAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACCAA
CAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAAAGAAGAAGGTTGACTCGGCAATCTCAA
TTTCGTATGAGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATGAGTGATGGTTGACTCATGAA
AGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCTCTCCT
TTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGT
Right flanking sequence: Indices 71772 -- 72271
GCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCC
CCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAATCTCTCATCAGTTACGAAATATAT
AGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCTCAGTCTCTAGGAATTCCTAAGCG
TTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGGAGAGCAAGCGCCCTACCCGAGTC
TCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGATCGAAACCTAAAGCCAAGTGCAT
CGATCGGTTTCCTTGCGTTGGGAGGGAGATTGAATGAACGCTTGAAAGCTAGCGGGGACTCAGAG
AGAAGAGAGCCAGGGATATCCAACCCAGGAATCGCACGCAGGCTTCTCGCCCCCTTTCTCTGACG
AGGGCGAAGCAGAGATCGAATGCTTCCAAAGCAGGGAAAAGAAGA
Found at i:88951 original size:12 final size:12
Alignment explanation
Indices: 88934--88960 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
88924 GAGGTTCCCT
88934 CTCGAGGAACGC
1 CTCGAGGAACGC
88946 CTCGAGGAACGC
1 CTCGAGGAACGC
88958 CTC
1 CTC
88961 TTCTCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11
Consensus pattern (12 bp):
CTCGAGGAACGC
Left flanking sequence: Indices 88434 -- 88933
CCATGCCCCACTATACTTTCTTCTAAGCCAGCTTTTCACTCTTTGTTTTCGTATCATCTCATTGG
ACTTATTTCAAACAAACTCGTTACACTCGCACCTGATACACGGGAACGAAGAAAACTACATGGGG
AGCACGCTTACACCTGCAAGAACTAAGGGTCCAGACCAAGCACAGACAGATAGAACCAGACATAA
AAAATCTTCCTTTGCACAATGCCTATCAGATATGGAAGGAGGATCTTTCAAGAGAAACTTCCATT
TTATTTTCTAGCTCCGAGAGCTACTTTAATGGCTTGTGCCCATAACAAGTAGTTATGACCATTCA
ACTTTACAGAGGTAATCTGCATACTGACCTGATCAGATGAAGTGTTGGAGGCGGATTTATTTGAG
TTAGAATCAGCCATGACGAATAACGTTGAGAAAGACCACCCAAGAAAGAATAAAGAAGCAACCCC
CACAACCATGGAGAATATGGGAGCAAGCCTAAGAAGAGGTTCCCT
Right flanking sequence: Indices 88961 -- 89460
TTCTCATTATATGATTTGTGTGAACACAGTAAAGTCCCACCATAAGCATTCTCTGCATCTCCACT
GCATTAAATGAAACTAAACGTCCCTTTCAACTTTGGATCAACTGCCTCAATCAGTTTCCCTTTCT
CCCAGTAGCTCCATACCAATCAACAAGCACCGTACCAGCATCATCCGACAGGCCTTTTCCCTGTA
GCTACCTCTAGCACCACTAGACCGAAGCTGTAAACATTTCTGTGATGGAACACCATAATAAACAT
ATTAAGGAGCAAGATCTCCCATTTTCCCAGCTGGTATTGTAGCTTCCCTGGTTATAGAACTATGT
TCATAGACTTCTGCCTAAATCTCCTAGCTTGGCATTGAATTCTGCATCAAGCATTATATTTCAAG
TCTTAACTAACGTCCCTATGAATTCTTTCTCTCTCACATTCTGAATGCAGATATGATAGAGCAGA
CGCAACTCCGAGAACTAGATTCAACCTTTGCTTTCTTTTCCTCTG
Found at i:116473 original size:14 final size:14
Alignment explanation
Indices: 116454--116483 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
116444 TAACAAGCGA
116454 CGGAGGCGGGTAAG
1 CGGAGGCGGGTAAG
116468 CGGAGGCGGGTAAG
1 CGGAGGCGGGTAAG
116482 CG
1 CG
116484 ACGTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.57, T:0.07
Consensus pattern (14 bp):
CGGAGGCGGGTAAG
Left flanking sequence: Indices 115954 -- 116453
CTCTTTCTCTATCTCGGTCTCGGTTTAGCGATAGGTTGCTCTCAAACGATAGCCAAGTTTGATTT
GCTGTTTTAGCCTGGGTACGTACACATACGCGTACTATAGAATCTAGATGTCTGATTGGTCTCCA
TAGCTTGATTTGCTTTCCTCCTAGCTGGATGGGTTTCTTGCTTTCTGCCTTGATTGAGAACCTCG
AATCGTTGTTATCGTTTTTAGTAGAATTGGGTTCTTAATAATAGGCATGCTGTCTCCTCTTTTGA
TTATTCCTACACGCACGAGAGGAGCAGACGGTTTTTCGTTGATGGGCAGGTGATAAGATCTGTAT
TGGATAAGTTTCTTTCACCTGTACCATGATATGCCTGATTGGCTGTTTATAGAATTGGTCCAGGA
ATGCTGTCACTCAATTACTAGGTCTTCTTCCCACGTGTACGTAAATATAAGAGAGTGAAGGCTTT
CACTAGCGCCTAACGTTTTAGCTAAGGGAAGCAGATAACAAGCGA
Right flanking sequence: Indices 116484 -- 116983
ACGTATTAATAGTTAAGCGACGGAGGTAAGCGGAGGAAGCGTAGGAATCGGTTACTCAACTGCCC
TTAGACTAGTGTAGCCCGATAGGACTCCTTTAAATGAGTCCGACGGCTAACAGCTAATACCTGCT
ATCTCGGCAACTCCTACCGATCAAGCAAGGAAGAAAGCAACTCTCGCTGGAGGGACAACTCCAGC
TCAGGCAGAGCTAACCATTGAAGAACTAACTGATAGAACTACAAGAAACCAAAGGAAGAAGGTAG
ATACTTAAGTTAACAGTCAAACAAAAGAAAGCAAATGAAGGCACAAAGAAGGAACAAAGGAACAG
ACCTTAGAGAAGAAGGAGAACAGTCACAGATAGATTCAAAGCTAAGGAGGAAACGAGTAAAGAAA
ACAGATGGCATCTTATATAGAGTATAGAGAAAGATTCTCACAATAAAAACAAGAAGGAGAATTTG
ACTCTTCAACCGGAACCCGCGCCTGTGCGCCTACCGAGCTAGCAA
Found at i:118996 original size:19 final size:19
Alignment explanation
Indices: 118972--119010 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
118962 GCCAAAGGAC
118972 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
118991 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
119010 A
1 A
119011 TTGACCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (19 bp):
AGATTTTACAAATGGTCTG
Left flanking sequence: Indices 118472 -- 118971
GTTGGAGTTGGTACTTCAACCGGTTCTTTTACAGTCCCACCTTCATAAGGAAGAACTGCCTTGAA
GGGTAAGGCAGGTCAAAAGAGTGGGCATCTTTCTTACCTATGGCTAACTCAAAAAAATCTGAGAG
GGGAGGTTGCTCTGCTCTGGATGCACCGGTCAGAACGGGGAAAGCTGCTCTTAGAGCTATCTCTT
TCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCTAGAGCGGAATATTAGGTA
GTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCTTTGACTTTTGAGAAGATA
GACCCAAGTAGCCCTTGAATGATCATCCATTATGGTTCAAAAATATCGAAAACCTTCTGTTCTGT
GGTTTCAACTGAAAAAGGGCCCAAAATGTCAATGTGAATCAGATCAAAAGGTTCATCACAAATGT
TATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGAC
Right flanking sequence: Indices 119011 -- 119510
TTGACCTTTTTATTCTTATGAGTAGGGAGTCAATCTGAAAGGATAGCAGTTTTAGAAGAAGGATG
GAGCAGAAAGATAGAAAGATCAGTTGCTGGAAATCAAATATGTAAATAGTCGAGTTATTGCATTC
CTCTCACAAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAATTATCAATTTCATAAG
AGAAGAAAGATCGTTTTTTTAAATTATCAATTTCATAAGAGAAGAAAGATCGTTTTTAGAAAAGA
AAGAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTTACG
CTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAGCTC
TGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTCCGA
TTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTA
Found at i:119206 original size:39 final size:39
Alignment explanation
Indices: 119152--119262 Score: 222
Period size: 39 Copynumber: 2.8 Consensus size: 39
119142 TCTCACAAAC
119152 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
119191 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
119230 TATCAATTTCATAAGAGAAGAAAGATCGTTTTT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTT
119263 AGAAAAGAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (39 bp):
TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTTAAAT
Left flanking sequence: Indices 118652 -- 119151
TTAGAGCTATCTCTTTCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCTAGA
GCGGAATATTAGGTAGTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCTTTG
ACTTTTGAGAAGATAGACCCAAGTAGCCCTTGAATGATCATCCATTATGGTTCAAAAATATCGAA
AACCTTCTGTTCTGTGGTTTCAACTGAAAAAGGGCCCAAAATGTCAATGTGAATCAGATCAAAAG
GTTCATCACAAATGTTATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGACAGATT
TTACAAATGGTCTGAGATTTTACAAATGGTCTGATTGACCTTTTTATTCTTATGAGTAGGGAGTC
AATCTGAAAGGATAGCAGTTTTAGAAGAAGGATGGAGCAGAAAGATAGAAAGATCAGTTGCTGGA
AATCAAATATGTAAATAGTCGAGTTATTGCATTCCTCTCACAAAC
Right flanking sequence: Indices 119263 -- 119762
AGAAAAGAAAGAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAG
TGGTTACGCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACT
GAGAGCTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCT
GCGTCCGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGCCCAGTCG
TGCCGAGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCTCCACTTGTCG
CGTACTTCTTTAGCTGCACCGTCATCGCCGGCCGGACAAACCCTTCCAACAAATGGGGAGTGGGC
CAAAGGAACACGACACATCCAGTGAAGAGATCCCGGACAGGGAAGTCAGAAGGTCTGCAAGCCTC
GTCTTCGCCCCTGCTTTAGCTGCACTTGGTGCGTAAGAGGGAGAC
Found at i:138245 original size:17 final size:17
Alignment explanation
Indices: 138225--138263 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
138215 CATTTCTTTC
*
138225 ATATCTCCATTCTCATA
1 ATATATCCATTCTCATA
138242 ATATATCCATTCTCATA
1 ATATATCCATTCTCATA
138259 ATATA
1 ATATA
138264 ATAGGGAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATCCATTCTCATA
Left flanking sequence: Indices 137725 -- 138224
ATAACGCTTTTCTTCCGATCTCACAGTTCCTTTGTCCCTTGTAAAGCATTCTATCTGTGGCCACG
TGCTACTGTGGAGCTTTTGAATCGACGTCAACCAGAAGAAAGAAGAGAGCCAGAGCGCCATACCC
TTCTCGGAAGGAACCCGCCCTTGGAAGAGCTACTAGGGCATCGCATCTATGCTGAAAGAGCACAA
TCCTTGATCTAGAGGGAGCCATTCCTTACCTTAGAGGAAAAGACTTAACCCAGTCCTCAGTTTCC
ACTTACAGAATAAATGAATCACTTTGCCACTCGACGAGGCAGATAGCTCCTCTGGTGCTACTATA
GCCTTTGTGGTTGCTTCGCTAGGAAGAGCAGCACTTATATTGCTTGGATTATCTATTCAGCACAA
GCACACCGCTGTGCTGTGGAAGAGTAAACGAACTACTATCGATGTGTTACCTAAGAGATTAGCCT
AAACGAGAAAAGGGAGTGTGCTGGACTGACCTTTGCATTTCTTTC
Right flanking sequence: Indices 138264 -- 138763
ATAGGGAGGCGCTGACCTTACAATTGTAAGAGTTAAATGACCGACTGACTTGAATCTGTTTGCCG
TTGGTCCTTATCTTTAAGATAATGTTAAGAGTGGTAAGGGCTATGGGTATAGAGCCTTGGCCAAG
AGGTTGATTGAGTCAGTAGACCTAACGTACGCTTAAAGAAAAAGACAGCTCTGATCACCCTTTAT
CTTTCTCGGACTCCAGTAATATGTGTGGGGCAAGTAAACGTCAGCAACGAGGACTTCTTATTGGG
CTTACTGCCTCTGCCTGTCTTAGGTACCCAAGGGGAGTCCTACTAATAGCCATGCTGAGCTGTCC
TTATCGTAGTCATCTTTTCCTATTATTGAACAGTTTCAACTTGCATGTGTTAAGCATAAGCTTAA
ATCTTTCGAAGCTCCACTGATTCATCAAAATGCATCCAAAAATCCCGGGATATTAGCACTTTTTC
AGGCTGTTTTGACCTCGTCAATCAAAAACAATATCTTACAACATT
Found at i:144544 original size:18 final size:18
Alignment explanation
Indices: 144505--144546 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
144495 CTGAGGCGTA
*
144505 TTCCA-CAAGACGGTACC
1 TTCCATCAAGAAGGTACC
144522 TTCCATCAAGAAGGT-CC
1 TTCCATCAAGAAGGTACC
144539 TATCCATC
1 T-TCCATC
144547 GTCTGGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (18 bp):
TTCCATCAAGAAGGTACC
Left flanking sequence: Indices 144005 -- 144504
GAAAGACAGAAAGCATTGTTTGATCAGCCAGAAGAAAGGCTGTTCCGAAGGTTCAGTTGCACATG
TGGTCTAAAAAAAAAAGGTTACAGGTAGTGATGAGCAGCCTGCTCCTAAAGAACGGAAGGAGACT
TGTTTCTTCTCTGCGATGTTCTTGGAAACCGCGGCTTTTGCCCGCCAGCTGCGAATCATTCATTC
AGAACCGGATGGTATTTTCAGTCCAGGTATTCTCTTTCAACCTGGGTATACTTTGTACCCGTTTG
ATACGAAATTTAGTACCTGGGCAGCTAATGAAGGGTTGAGGTTTTATGAGGCTTGGCCTGGCTTG
GTGTTTGATTCCCTCGCCATGGGCTTCGACCGTTCTTCTCAACCTCTTTATTCCGGACGTTTGGC
TCAGTCCTTAGAGGGTGCCGGAAAGCGGCGTTTGTTTGTAATCGGTAACTGGTTTAAACAACGTC
TGTTATACCCCGTGCATGTGTGGGGTATGTCTGTTCTGAGGCGTA
Right flanking sequence: Indices 144547 -- 145046
GTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGG
CCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGT
CAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTG
TGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCAT
GCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGC
TTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTG
ATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTC
GCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCA
Found at i:147095 original size:15 final size:15
Alignment explanation
Indices: 147075--147104 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
147065 ACCCTTCTTA
147075 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
147090 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
147105 CAAAGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGAAAACTGGCATC
Left flanking sequence: Indices 146575 -- 147074
CAACTGTTAGAATTTCGATCGAACAAGTATTGGCATTCTGTCAGCATTTCCCCCGCGGTCAGTGA
TAGTTAGGAAAGGAAGAAAGAAAGGGTGATACACGAGAAGCTAGGTCAGGTATATATAGCGATTG
CAGATGGTGCACTAGTTTCGTATACATAGGCCCTGGTTGGTAAGGTGATAAGATCGACACATTAT
ATGCGATCTACGTTCATAGGTTCTACCTTGAAGCTCTTCTCCTTTCCTTACTCTAACAAGTAAGC
AAATAGGAATTACCTTGTGAAGCAACGTAAATTTAGTGAGTTTTGGGAGGTTAGCCTTAACACAT
CCAAATCTTCCGAAGTCAATGCGGTAGCAGCCACTGTCCCGACCTTTTCTGTCACTCCTTCCTTT
GAAAGGAGCTTTTCGCCGTTAAACTCAGCTCTTTTTCCGGCTTTACCGATTAGATCAGTTTAGAC
CTTACCTTGGGATTGGTTTTTTTCCTTTAAGGCTGACCCTTCTTA
Right flanking sequence: Indices 147105 -- 147604
CAAAGGTCCTCAACCAGGGAGAAATCGACAAATCTAGGATAAAGTCCACTTGAATCGACCAAAGG
GGAAGGAAGTATGAAAATCCAATTCTTTGACGGAAACTAAAGGCTAACCTACAAGCTAGCCTCGT
CGAATCGACTCACTCTTTTAACCTCAAAGGGAATCTGAGAAACAAGTAGATCAAGGATTCCCATG
TTGCCTATGGTGTCTTGCGAATTCCTAGGAATGTTAGGAATGGGAGAACCAGTAATCCCAGTAAT
CCCAGGAATAGGAGGTAAGGAGATTAGTTGGTTAGGAGGGAATCCCAGCAATATTAGCAATGAGG
TGATGAGATTAGGTTTGTTTTGGTTAGGGATTAGAGGAATGGGAGAGGTAAGCCAAGTAAGGTAA
GGAGTTTTTGTTTGTAGAAAGTTCCATTTCAATCTGCCTATCTGTTTGAATCAGTTTATCCCAAG
GAAGTGTTTTACTCTTTTAATTGGTAGTTGGTTAAGGAATCCCTG
Found at i:186252 original size:34 final size:34
Alignment explanation
Indices: 186192--186259 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
186182 AAGAGTTTTC
*
186192 AAGGAGGAACCCAGCTTATCCCCTCTCAGCGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
* **
186226 AAGGAGGAACCCAGCTTCTCTTCTCTCAGAGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
186260 GAACCCCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (34 bp):
AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
Left flanking sequence: Indices 185692 -- 186191
TGTACTCAGGGTACACTGAACACCACAAAAATCTCGATGAAACTCTGAGAACTAGAAGCAAGGGA
ATCAAAAAAGTCTATTCTTGACGTGAACGGCCGCTTTGTCATTAGAGTGTGAGAACCTTAAGGAG
AAAGCTTTTTGATTGATTTGTTTACTCAACTCGTAAAGGCTCATCAAACAGCGCTTTCTAGCTTT
CTTCAGGATTTAGCCTGAACCGATGCCAGAGCTCTCAGTGGTTTGTGGACTCGAACCACAGTAGG
AATTTACAGTTCCGGCTCCCCAGCGGAGCGTAACCACTTTCTTACTCGTAAAGGCAAAGAAAAAG
GGATCCGCCTCGAATCAAAACGTTCTTTCTTTTCTAAAAACGATCTTTCTTCTCTTATGAAATTG
ATAGTTTGTGAGAGGAATGCAATAACTCGACTGTAAGGTCCACCAGGTCCGTAGGAGAGTCAGTC
TTTCTCTAAGCAAGCTGTTTTCTGGCCTATACGGAAAGAGTTTTC
Right flanking sequence: Indices 186260 -- 186759
GAACCCCTTTCCTTCCGTCAGTCTCCAATTTTCGTTAGTTCTCTCTCTCTCTTAACAGAGCGGAA
TTCTCCCAGTTTCCATCTTTCCTTTTAGAGTTTACCACTTGCCCTGACGGGGGCTACCGCTTTCG
TTCAGTTTTCTCTCTACCTTTTCTTATTTTGACTTCATTTTCAAATCTTTTATGCTCGGCCATAC
CAACATGGGAAAGACCTAGCCTTCCCTCCCTTTGAAGTGCATTTATCAGATCAGCTCCCAGAGTA
ACTAGAAAGAGGGTGAAAGGCCCAACTTCTTCATTCATGGCCTTTTTTGTTTCTTTGATTGATCT
CCCTTTCGTATTCATTCGACCTGAGGCGTTCCTCTCAGTCATACAAAAAAGAAAGGTTATTTCAT
GCAATGCATAACGGGTGGGCCTCCTATGGATTCCTCTAACTCAATGAATGAAGGGAGGAGTATGA
GGAAGGCCGGCTTTCTAGATGAAAATGAAAACAAAAAGGAAAAGG
Found at i:191611 original size:15 final size:15
Alignment explanation
Indices: 191591--191622 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
191581 TTGGCATTTC
191591 TCTTTTCTTGCTCTT
1 TCTTTTCTTGCTCTT
*
191606 TCTTTTCTTTCTCTT
1 TCTTTTCTTGCTCTT
191621 TC
1 TC
191623 GGTAGTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (15 bp):
TCTTTTCTTGCTCTT
Left flanking sequence: Indices 191091 -- 191590
CATGCCAGCCTTGACCAATAGATCAGTAATGTTTTGAGAAAGATAGAAGCAGAAGTTCTACTCAC
TTTTTGACCAAGATTGAGCCAGATACTTTATAGAAAAGATGGCATTTTTGATGCATACTATGTCA
TCAATATTCAGAGGATTGGACCATGTGATTCTAAGATCATCAACATATACTAGAATGTACAGAGC
ATGACCACCGCTCATAAAGAGAGAGAGATAAAGTTGACTGAAAACCAAGCTCAGAGAGTTCTTTC
AAAGCAGCAAGAGTAGTCATGAATCATTCTTCCTTCGATTGGATAATTCCCATTGGATTGTCAGC
TATTGCATCAAATGTTCCAGCTCCGCCCAATTCTCGAAGTCATGTTAGGAGAGGTATTTCTTACT
TGACTAAAAAGGTACGGAGTGACTTGACCCTTGGGAGAGGTATTTCTTACTCGGAGAGGGAGGCC
ACTATCAGCTACTCTGCAACTTCTCATCCCACGGGTTGGCATTTC
Right flanking sequence: Indices 191623 -- 192122
GGTAGTGGACGGGCTAAAGGGATTTGCTTACGCGCTAGCGCTTTCGTTCACTTTTCTCACATTTC
TAGTACCAACTAATACTAATGAATTCGGGCGAGAGTCTTCAAGTATAAGGAGATGGTAAATAAAC
AAGTGCTCCAGTTCCACCGGTTCCTAATTAATGGGGGAGTTGCTGCGCTCTCTTCTATGTAAAGA
GAGATTTTCCACGGTAAAACAAGTGCTTAGCTTTGTTACTACATCCCGATAAATAGGTTAGGTTA
CTTTCTTGCTACGCCCGTTGACTAACTAGAAGAAAGAGAATGAATAGACAGGATAACTAGTTCCC
GTTGGTTGACAACAGCTCCCTTTTCCTTTAGCTTACCAGTTATACCTAATGTGGCGCGGTCGACA
TATTACTATAGGGCGAGCTATGTTAGCCAACCCTTTCCTCAGCTGCAAGGTCTCTGCCATAAGTT
TCAACCCAAACTCAGGCAACTTAAGCACCGGCTCTAACTTGATAG
Found at i:205189 original size:21 final size:21
Alignment explanation
Indices: 205165--205221 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
205155 AAGGACAGAG
205165 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
205186 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
205207 AACAGATAACAACAG
1 AACAGATAACAACAG
205222 TAGGAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (21 bp):
AACAGATAACAACAGCATATT
Left flanking sequence: Indices 204665 -- 205164
AAGCAGACAAGCTGGTGGATCATCTGATCTTGAAATAGGTCATCCCAGCTATCCCGCCCGATCTT
TTCTCTCTTTATTTCGTCAGGTATCTGAATCATACAATTCCTCGGATGTAGCTTTTCACATTGGA
CCAAAACAAGGCCCGGAAACCCCGCTAGCTTTGTTGATAGAAAGTTAGCTTCCCGTGCTTGACTA
GTAGGGCTAATGAACGACCCTTAACTATGGAATGTTACGCCTTTCCTCGTTTACTCACAACGTAA
TCAACTCCATTGGTTATTTTCCCGGGGGGAACACCTATAGCCCCAATAGACTGATTTAGTAGGTA
TGATGTATTACTAGGAGTCTCTAAGTTCCTGCTTTGGTTGTCCCTGTCCGGGCTAAGCGGAGTTT
AGCTCCGGCCGTTAATAAGAGCTTCCCTCCATTCCTTCACTACACATTCAAGCATAGGAACAGAA
GCTACGCTAACAACCTATTCCCACCTAACAACAGTAAGGACAGAG
Right flanking sequence: Indices 205222 -- 205721
TAGGAATATAGCCCTATAACAACAGCTAATAGCAGTAAGGAGATAACAAACAATCCATCAACGCT
ATAACCATACTATAACAGCCAGCACTCGGTACACAACATACAGTAGCAGCAGGAACTAATATAGG
TTAGTCGTCAGAGAAAAACCTATATTAGAAAGAAAGCTACTTCTCGGCCGGAAAGTACACTTCAA
AGAGAGGAGAGCAGAACAAAGGTAATGCTACCCGAACATTGAAGCCAGTCCCGGACAACCCGGAA
GGAAAGGGAAGACAGAACGACAATCACCGGAGGGATACGTACGGTATACGGGCCCTTCTCAGTCC
GCCCACAAAGAAGAAAGGAAAGGAGCTGCAACAGCTCAGCAAATCATAGTTGGATTCGGGGATAC
AACTATCAGGAAGAAAGCAGCACTTCCACGCAACAATAGAAGTATCGAGAAAGCAGCCCGTAATA
CAGACACAACCAAGGAAAGGGAAGCGGACAAAGGACGCATTCCCA
Done.