Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_031212.1/NC_031212/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           104460
Total number of identified SSRs:                 51
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    10


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	34
2	14
3	2
4	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A	-	-	-	-	-	10	4	1	15
G	-	-	-	-	-		1		1
T	-	-	-	-	-	14	4		18
AT	-	7	2		1		1		11
CT	-	1							1
TA	-		2						2
GAA	1	1							2
AAAT				1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A/T	-	-	-	-	-	24	8	1	33
C/G	-	-	-	-	-		1		1
AG/CT	-	1							1
AT/AT	-	7	4		1		1		13
AAG/CTT	1	1							2
AAAT/ATTT				1					1