Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_056281.1/NC_056281/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           343746
Total number of identified SSRs:                 54
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	46
2	5
5	2
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A	-	-	-	-	-	15	3	2	2	1				23
C	-	-	-	-	-	1		1						2
T	-	-	-	-	-	12	5	3					1	21
AG	-	1												1
AT	-		1											1
TC	-	1	2											3
CTATA				1										1
TATAT								1						1
ATTTGA								1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A/T	-	-	-	-	-	27	8	5	2	1			1	44
C/G	-	-	-	-	-	1		1						2
AG/CT	-	2	2											4
AT/AT	-		1											1
AATAT/ATATT								1						1
ACTAT/AGTAT				1										1
AAATTC/AATTTG								1						1