Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_062671
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 216786
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:1794 original size:17 final size:18
Alignment explanation
Indices: 1772--1805 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1762 TACACAATAT
1772 AAAATAAAAAGA-GAAGA
1 AAAATAAAAAGATGAAGA
*
1789 AAAATAGAAAGATGAAG
1 AAAATAAAAAGATGAAG
1806 GAACAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.09
Consensus pattern (18 bp):
AAAATAAAAAGATGAAGA
Left flanking sequence: Indices 1272 -- 1771
TGTGATCTCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGAC
CTGCTATTAACGTCGGCTTATCTGTCAGTCGTGTTGGGTCTGCCGCTCAGTTGAAAACTATGAAA
CAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCCTTGCTCAATT
TGGGTCAGACCTGGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTAC
CGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTTTAGTCATTTATGCAGCTGTC
AATGGATTCTGTGATCGAATGCCACTAGACAGAATTTCTCATTATGAGAGAGCCATTTTAAAGAG
TATAAAAACAGAATTACTACAATCCCTTTTAGAAAAAGGTGGCTTAACTAACGAAAGAAAAATGG
AACCAGATACATTCTTAAAGGAATGCGCTTTGCCTTACACAATAT
Right flanking sequence: Indices 1806 -- 2305
GAACAAAGTTGACACAATCCCTTTCTTTCCGTTGGTCAACAACCAACAAAACAAAATCGTTTAGT
TCTTCACTACTCGTACAGGAAGGCCTCTCTTTCTGTATGGGGGGAATCCTTTATTCTCAATCAAG
ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCCTCTTTAC
TTTCTATATTGCCATATGCAATGATGGAGATGGACTACTTGGGATCAGCAGAATTCTAAAACTAC
GTAACCAACTGCTTTCACACCGTACGAACAACATCCGGAGCAAGGACCCCAACAGTTTGGAAGAT
ATCTTGAGAAAAGGTTTTAGCACCGGTCTCTCCTATATGTACTCCAGTTTATTCGAAGTCTCCCA
ATGGTGTAAGGCCGTCGACTTATTGGGAAAAAGGAGGAAGATCACTTTGATCTCTTGTTTCGGAG
AAATCAGTGGCTCACGAGGAATGGAAAGGAACATATTCTATTTGA
Found at i:22808 original size:15 final size:15
Alignment explanation
Indices: 22769--22802 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
22759 ACCAACGGGT
22769 CCTCAAACCCAGCTG
1 CCTCAAACCCAGCTG
*
22784 CCTCAAACCCATCTG
1 CCTCAAACCCAGCTG
22799 CCTC
1 CCTC
22803 CGACCCGACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.50, G:0.09, T:0.18
Consensus pattern (15 bp):
CCTCAAACCCAGCTG
Left flanking sequence: Indices 22269 -- 22768
ATCAAGTATGGAAAGTGCCAAACATTGGGAACTACCCGGGGAGGAGTTAGGAACAGGAACAAGGA
GAAGCGAGAACCACTTAAATGGAGGAATCGATTGTATTTCGTCCTTTGTTCCCCATAGCAACTGG
GGATCAAAAAGCACCAAATTTGATGACTTATTAAGGGAAAGACGAAGTAAGAGCATGCTATTGAA
GACGTTGCAAGATATGTCGGGGAGGCCTCCGTTGATTGTGTACGAACAAAATACGAGTCCAAAGG
CAAGGTAAGAATAAGAAAGGGTTTAGCTAATGGAGATATTAACTCTTCCGGGAACCAGTAACGCG
TAAACCATGTCAAACCAAGACCGATCAATATCCGAACGGAACGGATTCGAACTTCTCCTAGAATA
GTTTCCGGTGCGAAATGAAATTCATAGGATATATTTATGAGTAATTCAAAGGATAACTATAAAGA
TTTTCTAGGATTATTATGTAACCCCCTTTCCTTTGACCAACGGGT
Right flanking sequence: Indices 22803 -- 23302
CGACCCGACGTGGTAAAAGCAGATCACAGCGATTGATTGCCCGCAGAACGCGCTGATACGGCGCG
CTTTCGCGGGTTCCCAGCTCTCTAATCTGCGTGATGTACGACTCATAGGTACGTACCCCTAAAAG
TCGCGGCCTATGCAGCTCGCTCCGGATTTCCGGGTAGCGGCGCAGAATAGACTGGGGATGAAATC
CATCCTCCACCAAGCTTGAATAAAGAAAGAGCGCACGAAAACAGCAAGGAAAGAAGGATACATCT
AAGATCATGATGTAATCCCATGAAAAACGAATCCATATTGAAGCCGCCCCATGGAAAGCACGAAG
CGGAGCGAAGTAAAGTCTTCAAAAATACTGAAGGACAATCCCATTCAGTTGGAGCAATTATGAGG
AATAGCCATTCTAGAGCATCTATAGAACTCATCCACTCCCCCAATTTTGCTAGTAGAAAAGATAT
AAATATCATAATTCAAATGAATTTTTCCTAACCAAGGCTTCGCCT
Found at i:27253 original size:21 final size:21
Alignment explanation
Indices: 27210--27253 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
27200 TATGAAGGCT
* *
27210 CTAGTGGGCGTACTGTTTTAC
1 CTAGTGGGCGTACTGTCTGAC
27231 CTAGTGGGCGTACTGTCTGAC
1 CTAGTGGGCGTACTGTCTGAC
27252 CT
1 CT
27254 TGTCCACTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.23, G:0.30, T:0.34
Consensus pattern (21 bp):
CTAGTGGGCGTACTGTCTGAC
Left flanking sequence: Indices 26710 -- 27209
TTTCAGGGGGAGCAGGATCATCATTTCCACTAAAGTCGTGGAACCGGCTTCCATCTAAAAAAAAG
ATGATTAGTTTCATCTATATAAATGGATCATTCTTAATTGGCTGAAGGCAAACGACCTAATGAAC
CCAACTACGGCAGGGAAGCCTTTATTCTGGGTGTAGGAATGAAAGGTTACCCGGCCAGAAACTTC
AATTAATCCTATGGCATTGTGAAATCTCTAATTGGAGGCATTAGCAGTTCAACCTATAGGGACAA
CGCCAAGCGGAGGAGTCGGTTTCAACAACAACCCGTGAAGACGAAGGTCTGCAATAAGACTTTGT
AACTCTAAATTTATTAAAAGAATAAATTAGCGTATCAAGTCTTGCTTACTATCTCCTAAGATAAG
TGAGAAAGGATTGCAGGCTAGATTCAAGGTATGCGAGTTTATTGATTCCACTCCGCTTTCAAGCA
AGATTGGGTGAGTGTTCAGTGTACTTGAGTAATAGTATGAAGGCT
Right flanking sequence: Indices 27254 -- 27753
TGTCCACTCAAGGCAAGCAAATTTATTTTTTAAAGCGCTAGAAATCGTGGTCCACATTACTACAA
ATCTGTTCTACACTAGATAGATTGCTCTGATTTTTTTTTACAATTCTCTTTTTTAAAGCAGATAG
TTCACAGTGCTCATTCTATCGATACTGGGAAAAAATCATAAATAAATAAAAAATCATAAAGCAAA
AAAAATGTTTACACTCAATTTTCATTACGAAGATGTATCACGTCAGGATCCGTTGCTCAAACCGA
ATCACGCCAACGTTATGGAAGTTCCTGGATCGTGTAAAATAAGAGTACTACCAAGGGCAGCACCT
TCTGATTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGTGCGGGCAGAAATTAATACA
GACACAAAGGGCTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGGGTCAAATAAAGAAA
AAAAAGGATATGTCAGTGACCTAGCACGGCAAAGCACTCTCCGAG
Found at i:27452 original size:18 final size:18
Alignment explanation
Indices: 27413--27453 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
27403 CGATACTGGG
*
27413 AAAAAATCATAAATAAAT
1 AAAAAATCATAAACAAAT
27431 AAAAAATCATAAAGCAAA-
1 AAAAAATCATAAA-CAAAT
27449 AAAAA
1 AAAAA
27454 TGTTTACACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAAAATCATAAACAAAT
Left flanking sequence: Indices 26913 -- 27412
CTATGGCATTGTGAAATCTCTAATTGGAGGCATTAGCAGTTCAACCTATAGGGACAACGCCAAGC
GGAGGAGTCGGTTTCAACAACAACCCGTGAAGACGAAGGTCTGCAATAAGACTTTGTAACTCTAA
ATTTATTAAAAGAATAAATTAGCGTATCAAGTCTTGCTTACTATCTCCTAAGATAAGTGAGAAAG
GATTGCAGGCTAGATTCAAGGTATGCGAGTTTATTGATTCCACTCCGCTTTCAAGCAAGATTGGG
TGAGTGTTCAGTGTACTTGAGTAATAGTATGAAGGCTCTAGTGGGCGTACTGTTTTACCTAGTGG
GCGTACTGTCTGACCTTGTCCACTCAAGGCAAGCAAATTTATTTTTTAAAGCGCTAGAAATCGTG
GTCCACATTACTACAAATCTGTTCTACACTAGATAGATTGCTCTGATTTTTTTTTACAATTCTCT
TTTTTAAAGCAGATAGTTCACAGTGCTCATTCTATCGATACTGGG
Right flanking sequence: Indices 27454 -- 27953
TGTTTACACTCAATTTTCATTACGAAGATGTATCACGTCAGGATCCGTTGCTCAAACCGAATCAC
GCCAACGTTATGGAAGTTCCTGGATCGTGTAAAATAAGAGTACTACCAAGGGCAGCACCTTCTGA
TTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGTGCGGGCAGAAATTAATACAGACAC
AAAGGGCTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGGGTCAAATAAAGAAAAAAAA
GGATATGTCAGTGACCTAGCACGGCAAAGCACTCTCCGAGGTCATGGAATGTCTCATTTTTTGGT
AAAAATCTCCGCAGTAATGTCTCTGTTAGATTTTCCGGTCGAAATACGGGAAAAGTCCATTCAAT
TCTTGATGGAAATGGAGTTTTGCGAATTCTCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAA
CATATTAGGGGGTTCCATGTAACTATTTTAACTTCGGCCAACACA
Found at i:40249 original size:18 final size:18
Alignment explanation
Indices: 40209--40251 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
40199 ACCGCCCTGC
40209 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
40228 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
40245 CATAGTC
1 CATAGTC
40252 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 39709 -- 40208
AGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTC
TGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTA
ATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGC
GCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTA
AAGGCGAAGACTCGGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCC
GCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTC
AGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 40252 -- 40751
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCGAAACCGACACAGGTGGACAGGTAGAGTATACCAAGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGG
GTAAGTTCCGACCCGCACGAAAGGCGTAACGACTGCCCCGCTGTCTCCGACATGGACTCAGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCCGCGGTTAGACGGAA
Found at i:53055 original size:21 final size:21
Alignment explanation
Indices: 53030--53089 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
53020 TAAGAATATG
*
53030 AAAATGACAATACTACATAGCT
1 AAAATGACTATACTACATAG-T
53052 -AAATGACTATACTACATAGT
1 AAAATGACTATACTACATAGT
53072 AAAATGACTATACTACAT
1 AAAATGACTATACTACAT
53090 CACAATCAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.27
Consensus pattern (21 bp):
AAAATGACTATACTACATAGT
Left flanking sequence: Indices 52530 -- 53029
TTCAAAGAAATTGATTTCTTTTCTTCATCTATACCCTATTATGTACCTGAAGTCTTTCAACATAG
TAATCTAGGTCAAGGTATGCGTAGTTTAGTGAATGAAAATTACGATAAGATAGTGGTAGAAGCAT
TAACTTTTTATAAAGGTGAATATGGAAGAGTGGTCATACTAGCTAGTTTAGGTGTATGTTGTACG
GTTTGGTCTCTCTATGTACCTGGCGTAGCTGGTCTAACACCTCCATTGGATAATTTTCCAAGGTT
TGAGTCATATCAACAATTCTTTAATCCAGAGACAACAAAAGATTTGTTTGATAAGGTAACTTTCA
TTCAGCGAACTGATATCTCTGAAGATGTGATCAAGACCTTCGAGAACGAGATTCCATTCAAAGAT
ATGAATATACCAGCAACTGGAGACAAAAAAATAGCTATTGGTTTAGCTTTGATGATTGTTGTCTT
TATGGCGTTGGGAGTAGCACCAGTGAAAGAGCAAATAAGAATATG
Right flanking sequence: Indices 53090 -- 53589
CACAATCAGTTAGGTTATCGTAACAATCAGTTAGGTTCTCGTCATTATTCAAAAGTCAAAGATTC
TCAACCATTTCTTTTTGAATTGCTAGATACTGTCTCTATATTGCATCTTATCCATCAGCCCATCG
TTTTCCATGGAATCTCTGATAAGGAGTGTGAAGATATGTTAGAAGATATTCTGTTAGGTAGATAC
CAGTTTTCTCCAATTCTTGTCCAACACATGGGCTATGAAGAACACGAATCTTTTGCTCAGCGAGA
TACTGTTGTGACTTCAGCTTACTTAGGGCTCTTACGCTATTACCCTAAGAAAAAAGAAGGTTATC
TCACATTTAGTAGACCATCTACTGAGAAGGATGTCTTGTTCATTCATGCTTTGGAAGAAGTTTTA
TTCTTAGATAAAAGTGCTTGGGGATATACTAGTCTAGATAGTCTACTTCCAGAGTATTTTTCGGA
AATCAAGAATGGAATGAAGGGTGTGAATCGAATCTATCGTCTTGA
Found at i:53117 original size:21 final size:21
Alignment explanation
Indices: 53091--53131 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
53081 ATACTACATC
53091 ACAATCAGTTAGGTTATCGTA
1 ACAATCAGTTAGGTTATCGTA
*
53112 ACAATCAGTTAGGTTCTCGT
1 ACAATCAGTTAGGTTATCGT
53132 CATTATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (21 bp):
ACAATCAGTTAGGTTATCGTA
Left flanking sequence: Indices 52591 -- 53090
ATAGTAATCTAGGTCAAGGTATGCGTAGTTTAGTGAATGAAAATTACGATAAGATAGTGGTAGAA
GCATTAACTTTTTATAAAGGTGAATATGGAAGAGTGGTCATACTAGCTAGTTTAGGTGTATGTTG
TACGGTTTGGTCTCTCTATGTACCTGGCGTAGCTGGTCTAACACCTCCATTGGATAATTTTCCAA
GGTTTGAGTCATATCAACAATTCTTTAATCCAGAGACAACAAAAGATTTGTTTGATAAGGTAACT
TTCATTCAGCGAACTGATATCTCTGAAGATGTGATCAAGACCTTCGAGAACGAGATTCCATTCAA
AGATATGAATATACCAGCAACTGGAGACAAAAAAATAGCTATTGGTTTAGCTTTGATGATTGTTG
TCTTTATGGCGTTGGGAGTAGCACCAGTGAAAGAGCAAATAAGAATATGAAAATGACAATACTAC
ATAGCTAAATGACTATACTACATAGTAAAATGACTATACTACATC
Right flanking sequence: Indices 53132 -- 53631
CATTATTCAAAAGTCAAAGATTCTCAACCATTTCTTTTTGAATTGCTAGATACTGTCTCTATATT
GCATCTTATCCATCAGCCCATCGTTTTCCATGGAATCTCTGATAAGGAGTGTGAAGATATGTTAG
AAGATATTCTGTTAGGTAGATACCAGTTTTCTCCAATTCTTGTCCAACACATGGGCTATGAAGAA
CACGAATCTTTTGCTCAGCGAGATACTGTTGTGACTTCAGCTTACTTAGGGCTCTTACGCTATTA
CCCTAAGAAAAAAGAAGGTTATCTCACATTTAGTAGACCATCTACTGAGAAGGATGTCTTGTTCA
TTCATGCTTTGGAAGAAGTTTTATTCTTAGATAAAAGTGCTTGGGGATATACTAGTCTAGATAGT
CTACTTCCAGAGTATTTTTCGGAAATCAAGAATGGAATGAAGGGTGTGAATCGAATCTATCGTCT
TGAAATTGATTATCCACCTGAGATTGGTCACTTTCTCGAGAAGAT
Found at i:54911 original size:18 final size:18
Alignment explanation
Indices: 54900--54975 Score: 125
Period size: 18 Copynumber: 4.2 Consensus size: 18
54890 TTTCTTATCC
*
54900 GTCTCTGTTTTCAGATCT
1 GTCTCTGTTTTCAGATCA
* *
54918 GTCTCTGTTTTCTGAGCA
1 GTCTCTGTTTTCAGATCA
54936 GTCTCTGTTTTCAGATCA
1 GTCTCTGTTTTCAGATCA
54954 GTCTCTGTTTTCAGATCA
1 GTCTCTGTTTTCAGATCA
54972 GTCT
1 GTCT
54976 TGGTTGTTGG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 53 1.00
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.46
Consensus pattern (18 bp):
GTCTCTGTTTTCAGATCA
Left flanking sequence: Indices 54400 -- 54899
GTGTTGCGGCTCTAAGCCTTTTCGATGCTTTCACCCGCACTAGTATATGGTGATATCAAACTCGA
AAGCCCGAACACAAGCATACCTTATTATTATGAAAAGGGGAAAGGGGCTAAAACCAAAGCTAAGG
AGCTGACAACTGCGAGACTAGGTTCAAGGAAAGACTTGGTATCTAATCCGTGCCTTCGTTCCGGC
TATAGTCCATTAGCGGGGAATACAAGCATGGCGAGAAAAGGAAGATGACTCTTCCCAACTCAAGT
CAAGCGTGAGGAAGGAGGGGAAGAACAACTAGAGAAAGGCTAAGTGAGGGCCATTCTCGCGAGTA
GGAACATGACAAACCTTTAGCAGTAAGCAGCAGAACTCCCCTTATTTTGGGAAAGCTTTAGCATT
CGATAGCAGGGCTAAACTAGAAGAGAGGATGCTTCCCACCCTTATACTTTTACGGAGGTTTCGTC
TTGTCAGTCTGGTTTATCCTCTCAGTTTTCTTGGTTTTCTTATCC
Right flanking sequence: Indices 54976 -- 55475
TGGTTGTTGGCTTAGTGAATTTCTTCATCTCATCTTTCAGAGTATCAATCTTACTTTTCATCTCG
GAGATCTCTCTATCCTTCTCTGAAATGACTTTGCTCATCTCTCTTTCCCTTTCACTAAGAATCTC
ACTCTTAGTCTGAAGGTGATTCATTTCATTCCTGAGAAAGAATAAGATTCTATCTCCCAAAATAG
GACTAACGTTTGACAGATCTCTGATATGAGTAGGTTCGGTATCAATCCATATGTTTTGGCTATTA
TATACTGGTAACCTTTTTGAATCAATGTTAATACCAAGTTTGTATAAACTTTCTTTCTTATGGAT
TTCCAGTTCTTTTAAATCAATTTTAAAGCTGGAAGTAACCTTAACATATTGTTTCCGAGATGGGT
CATCGTACTGTGACTGAAACCAATCCAGTGTCACAAAGCTTTTAGCAGCACCTTTGTGCTTGAGA
ACGATCTTTCCATCAGCGTCTTCCTCTATGTATCCATAAGATTTA
Found at i:57830 original size:12 final size:12
Alignment explanation
Indices: 57813--57837 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57803 GTTTCTTTAC
57813 ATCTAGTGAATG
1 ATCTAGTGAATG
57825 ATCTAGTGAATG
1 ATCTAGTGAATG
57837 A
1 A
57838 AGGTCGCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (12 bp):
ATCTAGTGAATG
Left flanking sequence: Indices 57313 -- 57812
ACACAATGAGGATTCCCCGCCTGAAAAAAAATAGGAAAGCTCCTTTCCTTAAGGGCCTTTCATCA
GAGTCCCTTCTTTTACCGGGTATTTATTCTACATCCATTTCAGGTCACACATGGCTAAGCTCCTG
GGACAGGGAGAGGTAAAAAGGCATAGCATAGCTTTCAGGGAAACTCCTTCAGATGTATTGGAAAT
GGAAATACAGATCAAATACCTTCTGAGGCGGTGTTCCCTACATACAGTCATACAGTACGGAGGGG
AAGAGAAGAAGGGCTGGGCTAGGCACATAAGGTGGGGTTAATTGTCTTACAGGCAAGCTCTCGGG
CTTCTAGTACCGATTTATAAGCCACTGCTTACTTCGACGTTTTTCCATTTCCCATAGAATCTCCC
TCCAAATGGCACTTGTTCATGCGTCTGTCGCCGTAGCAGCTAAAATAACGGAGGAAGGGAGGAGG
GGGAAAAGTGGGTATGTGGCTTTCCCCTTAGGAAGGTTTCTTTAC
Right flanking sequence: Indices 57838 -- 58337
AGGTCGCATATGCGCTGCAAGAATCGTCTGTTATAGAATTCGCTGCTATTGAACTAAACGAAGGG
GAGATAAATAGCATATTAAAAGGGCAAGCAAGACGCCGCAGATAAGAGAAGACAGGAAAGATCAG
AAGCAAGAAATGCCCTGGTTTCAGGAATAATTTGATGTGCACAGAGGACTCATCTTTCAACAGCA
TGTCCGAAAGGACGTTCATTCAACGGCATTAGCGGTCTAGGCTCTTCGGAAGCAGAGCATAGGAT
AGGCTGCTGGTAAGACCAATAGGCTATTAGATGGGATAGGGAGGCAAAACCGGTAATCCTTTGTC
CAAGATCCTCTCGGACTGTTGAATAAAGGCAGGGAAAAAGCTTTCACCAGGTCCAGGAATCGGTA
TTAGCTCTGTTTTCGCTGTTCTAGAGTCGGTAGTTTTAATTGCTCGTGTTGAATCAGCCGGGAGA
TTCGGATGAAAGGTTCTCGAAATGGAAGCTCTGTACCAAGGGTAG
Found at i:74160 original size:23 final size:23
Alignment explanation
Indices: 74134--74184 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
74124 ATATCTTTTT
74134 TTTTAGATAGATAAAGAATTCTA
1 TTTTAGATAGATAAAGAATTCTA
* * * *
74157 TTTTATATATATAGAGAATTCTT
1 TTTTAGATAGATAAAGAATTCTA
74180 TTTTA
1 TTTTA
74185 ATCTAGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (23 bp):
TTTTAGATAGATAAAGAATTCTA
Left flanking sequence: Indices 73634 -- 74133
AGCTAACTCATGAAACAGCTGCGTTTGTGGTAAAATGAAGAAGCAAGGAAAGCCTAAACAAAGTC
TGAGCCAAGAGCTTCTTGTCTTCCATCAGCCTGCTCTGACTTTCGTCGAAAGAGCATTTAGGGAT
GCTTTCATGCCCGGTTGAAGAAATGCTGGGAGTCAATGTTAGATTCTATTGAAAGGTTGGTAATC
GAGGCGTAGACCTCTTACTGGTAAGCTAGCCCCAGTGCCAACATCTATATCAGCACCCATTGCAA
GAAAAAGGAAGCCGGAGCAGCATATGGGACAAGTGGTAGGCTTAGTAGGGCTCGAACCTACAATA
TCACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCTCTACATGCAA
TTCGCTCACTTCGGGAAGAGCGAACGGAAAGAGGAGGCCTTTGCTCTATCTGCTTCTTCCTCTCC
CCAGGAATGAACAATTGGAAAAGAAAAAATTCTAAATATCTTTTT
Right flanking sequence: Indices 74185 -- 74684
ATCTAGAAAAATGAAGTGAAGCAAGCGGCCCTTTCGCGACTCAAACTGCCGGTACGCTTTCCGGC
TCGCAACCGGGCGGAGGCTCTCTATTTGCTTGCAATGCCGGCTCTTCGCCTTTAGTTAGAAGTAG
AAGTAGAGGGCGCCGTTTGCCCCACACTTCCTAAAAAGTAAAAAAGTATGGATGAAGTAAGAAAA
AGTACATAAGGAATGATAAAGAAAAACTTGGTTACGGGAACCGAAGGTTAGGCCAATTTAGTATA
GCTACACCTATAAAAGTGTATTCCTACCCTTTCCCCTTTCTGTCAATGTTGCCAATTCCCAGAAG
ACTAATGTACCCTCGTGTATACAGTTGTCCAACTACTTTCTTCCTCCGACTTCTTTAGCCACTTC
CGGCTTCCCCACTTCCGCATCTGTCGTATTCGGGAGAGCTTGCTTCGTGGCGGAGCATTTAGCAA
TGCTAGCAGCCTGGTGAGGGCTGGCTGTCTGGGGACATTTTAAGG
Found at i:112380 original size:19 final size:19
Alignment explanation
Indices: 112343--112383 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
112333 TTTAGTAAGC
* *
112343 GTGTATAAGCAGCTGTTTA
1 GTGTATAAGCAACTCTTTA
*
112362 GTGTATAAGCAATTCTTTA
1 GTGTATAAGCAACTCTTTA
112381 GTG
1 GTG
112384 GTCGCACCGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (19 bp):
GTGTATAAGCAACTCTTTA
Left flanking sequence: Indices 111843 -- 112342
TCGCTCAGGTCAGCGAGGACTCACTCACCTACTCCTTATCTAATACTTTCTTCTATCTACTGAAT
TAAAAAGGCGACCCGCCGCGCCGGGCTATAAGATAAGATACAGTGTACTACTTGACTGGTAAGAA
AGAGCTTCCGTAAGAACTGGAAGACTCTTGTATGTACGGTAACCCTATCTTCCGCTACTGGTGGA
CTGTTGCACATAAAGGCCGACAGAAGCAACCTTTCTTAGCGCGCTTTTCAAGCGCTTAGCTTCTG
CTAGAAAAAGGCGGCAAGGCCATAAAGTAAGTGAAGTTGCAAGCCTAAGCCAAGAAGGTACGAAC
GAAGTGACGGGCCCTTTTAGAGATAGGGGGCGGCTTTCTTGTGGTAGTCATTGCGAACATCTCTC
CTCTTCTCTTAGCGTGCACAGTTTGCTTACGCCTTAGGCACATCTATCTTTCTTAGTTTCACGCT
GGCCTAATGAATTGAATATGAATAAAAGTCAGTCTTTTAGTAAGC
Right flanking sequence: Indices 112384 -- 112883
GTCGCACCGGTACGATGGAGGTTGGTTGAAGATGATGTTACGCGGCGTTCAGAACCAGTCTTGAA
GTGAATGAATTAGAAAGAACGAAGAAGTAAGGAAATGAGACGACTCTTTCTTGAACTATATTATA
AACAGACCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCATATATCGTCGTAACG
CCCTTAATGCTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCC
TCCGTTGTTTCCTTTTCCTTCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTTGAAT
TGTATTATTTAAGTGCTTATTGCTTGCCAAAAATCCTACTTCTACAATTGGTAGGTCACCGGGTT
ATTCAAATAAGTCGTGTTTTCCGTGGTTTTCCCATGTTACAACTTCCGTACCAATTCGGTCGATC
CGGAATGGATCGGTTAAACATTCCATTAGGGAGCCTGGTCTTGAC
Found at i:124269 original size:16 final size:16
Alignment explanation
Indices: 124248--124288 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
124238 AAAAGTGGAA
124248 TCTTTCTGCGGGATCC
1 TCTTTCTGCGGGATCC
*
124264 TCTTTCTGCGGGATGC
1 TCTTTCTGCGGGATCC
124280 TCTTT-TGCG
1 TCTTTCTGCG
124289 CTACGATGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.05, C:0.27, G:0.27, T:0.41
Consensus pattern (16 bp):
TCTTTCTGCGGGATCC
Left flanking sequence: Indices 123748 -- 124247
CCTGCCGGCCCGCTCTGAAGAATTCATGGGTCGGCGGGCGGGCGAGACAGAATGGGCGGGCACTA
CTAACCAAGACAAGCCCAGTTCCCGCCGATAGGCGCTGGTAGCTTGCTTCCAAGCCTTGCCTTAT
ATGATAGTTGTGGCCATGGCCCGAAGGAACCTTAAGCACTTGTACAATGCTTCAAGTCAAGGCTC
TGGGCAACGGGAGCCTTGACTTTCCATGTTTTTAGTCAAATGCGCGCTAGCGCGCTACAACTAGC
ACTTTTTTCTCTGATAGGCTCGCTTCTTCAAGCTCCGCCCCTTGTTGAAAAAGAAAATAAAGAAA
AAAGGGCTAACGGGCCTTTACTTTTTTGAGGAGATATAAAAAGTAAAGAAGCAACCTTACTAAGC
AAACGTAGGCTTGGGCTCGAAAGCAAGAAGCAACGGCTTTCGCGCTTGTTGGAGCTATTAAGCAT
CTTAGACTATTGCATTCCCTTTTTCAGCTGGACAGAAAAGTGGAA
Right flanking sequence: Indices 124289 -- 124788
CTACGATGTACTTTTACTCTTTAAGTGCGCCACTCCTTCTTTTGTCCTGTATCTGTAGCTGCTTT
TCCCGCACTCTCTTTTATCCCGCCGAAGGTCCCCCTTACATAATAGGGGTTAAGTTAAGGGGGTG
CACACCGTGGTCAAATCTGCATGAAAAACCGGGGGGAATCTTTAGTCTTTAGTATTATGCTCCCG
CACACCCCCTATCTCTTAAAGGCTCTGCGCTCCCGCATTCTGATTGATCCTGTGCAATGTTGTAA
TCCTGCTGTTCCTTTATCCCCCGCTCCGCAGCTGCTGGAGACTTAGATTTTGAGCCTTTTGCGGT
ACTGATTGATGTTATGGGGGATTACTTGGGTTGGCCGGGCTGTTTGTTTGCGAAGGCCGAAGGAC
TTAAAAATAAGTTTTTTGTGTTATTGGACAGAATTGGTGCCGTTTTCCCACGCCTCATTTTCCAG
AATATGATTATGAGCTGCAGAACGCTTGAAGCTGGAATTTTATGA
Found at i:143201 original size:18 final size:18
Alignment explanation
Indices: 143161--143203 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
143151 ACCGCCCTGC
143161 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
143180 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
143197 CATAGTC
1 CATAGTC
143204 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 142661 -- 143160
AGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTC
TGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTA
ATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGC
GCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTA
AAGGCGAAGACTCGGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCC
GCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTC
AGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 143204 -- 143703
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:156007 original size:21 final size:21
Alignment explanation
Indices: 155982--156041 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
155972 TAAGAATATG
*
155982 AAAATGACAATACTACATAGCT
1 AAAATGACTATACTACATAG-T
156004 -AAATGACTATACTACATAGT
1 AAAATGACTATACTACATAGT
156024 AAAATGACTATACTACAT
1 AAAATGACTATACTACAT
156042 CACAATCAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.27
Consensus pattern (21 bp):
AAAATGACTATACTACATAGT
Left flanking sequence: Indices 155482 -- 155981
TTCAAAGAAATTGATTTCTTTTCTTCATCTATACCCTATTATGTACCTGAAGTCTTTCAACATAG
TAATCTAGGTCAAGGTATGCGTAGTTTAGTGAATGAAAATTACGATAAGATAGTGGTAGAAGCAT
TAACTTTTTATAAAGGTGAATATGGAAGAGTGGTCATACTAGCTAGTTTAGGTGTATGTTGTACG
GTTTGGTCTCTCTATGTACCTGGCGTAGCTGGTCTAACACCTCCATTGGATAATTTTCCAAGGTT
TGAGTCATATCAACAATTCTTTAATCCAGAGACAACAAAAGATTTGTTTGATAAGGTAACTTTCA
TTCAGCGAACTGATATCTCTGAAGATGTGATCAAGACCTTCGAGAACGAGATTCCATTCAAAGAT
ATGAATATACCAGCAACTGGAGACAAAAAAATAGCTATTGGTTTAGCTTTGATGATTGTTGTCTT
TATGGCGTTGGGAGTAGCACCAGTGAAAGAGCAAATAAGAATATG
Right flanking sequence: Indices 156042 -- 156541
CACAATCAGTTAGGTTATCGTAACAATCAGTTAGGTTCTCGTCATTATTCAAAAGTCAAAGATTC
TCAACCATTTCTTTTTGAATTGCTAGATACTGTCTCTATATTGCATCTTATCCATCAGCCCATCG
TTTTCCATGGAATCTCTGATAAGGAGTGTGAAGATATGTTAGAAGATATTCTGTTAGGTAGATAC
CAGTTTTCTCCAATTCTTGTCCAACACATGGGCTATGAAGAACACGAATCTTTTGCTCAGCGAGA
TACTGTTGTGACTTCAGCTTACTTAGGGCTCTTACGCTATTACCCTAAGAAAAAAGAAGGTTATC
TCACATTTAGTAGACCATCTACTGAGAAGGATGTCTTGTTCATTCATGCTTTGGAAGAAGTTTTA
TTCTTAGATAAAAGTGCTTGGGGATATACTAGTCTAGATAGTCTACTTCCAGAGTATTTTTCGGA
AATCAAGAATGGAATGAAGGGTGTGAATCGAATCTATCGTCTTGA
Found at i:156069 original size:21 final size:21
Alignment explanation
Indices: 156043--156083 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
156033 ATACTACATC
156043 ACAATCAGTTAGGTTATCGTA
1 ACAATCAGTTAGGTTATCGTA
*
156064 ACAATCAGTTAGGTTCTCGT
1 ACAATCAGTTAGGTTATCGT
156084 CATTATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (21 bp):
ACAATCAGTTAGGTTATCGTA
Left flanking sequence: Indices 155543 -- 156042
ATAGTAATCTAGGTCAAGGTATGCGTAGTTTAGTGAATGAAAATTACGATAAGATAGTGGTAGAA
GCATTAACTTTTTATAAAGGTGAATATGGAAGAGTGGTCATACTAGCTAGTTTAGGTGTATGTTG
TACGGTTTGGTCTCTCTATGTACCTGGCGTAGCTGGTCTAACACCTCCATTGGATAATTTTCCAA
GGTTTGAGTCATATCAACAATTCTTTAATCCAGAGACAACAAAAGATTTGTTTGATAAGGTAACT
TTCATTCAGCGAACTGATATCTCTGAAGATGTGATCAAGACCTTCGAGAACGAGATTCCATTCAA
AGATATGAATATACCAGCAACTGGAGACAAAAAAATAGCTATTGGTTTAGCTTTGATGATTGTTG
TCTTTATGGCGTTGGGAGTAGCACCAGTGAAAGAGCAAATAAGAATATGAAAATGACAATACTAC
ATAGCTAAATGACTATACTACATAGTAAAATGACTATACTACATC
Right flanking sequence: Indices 156084 -- 156583
CATTATTCAAAAGTCAAAGATTCTCAACCATTTCTTTTTGAATTGCTAGATACTGTCTCTATATT
GCATCTTATCCATCAGCCCATCGTTTTCCATGGAATCTCTGATAAGGAGTGTGAAGATATGTTAG
AAGATATTCTGTTAGGTAGATACCAGTTTTCTCCAATTCTTGTCCAACACATGGGCTATGAAGAA
CACGAATCTTTTGCTCAGCGAGATACTGTTGTGACTTCAGCTTACTTAGGGCTCTTACGCTATTA
CCCTAAGAAAAAAGAAGGTTATCTCACATTTAGTAGACCATCTACTGAGAAGGATGTCTTGTTCA
TTCATGCTTTGGAAGAAGTTTTATTCTTAGATAAAAGTGCTTGGGGATATACTAGTCTAGATAGT
CTACTTCCAGAGTATTTTTCGGAAATCAAGAATGGAATGAAGGGTGTGAATCGAATCTATCGTCT
TGAAATTGATTATCCACCTGAGATTGGTCACTTTCTCGAGAAGAT
Found at i:157863 original size:18 final size:18
Alignment explanation
Indices: 157852--157927 Score: 125
Period size: 18 Copynumber: 4.2 Consensus size: 18
157842 TTTCTTATCC
*
157852 GTCTCTGTTTTCAGATCT
1 GTCTCTGTTTTCAGATCA
* *
157870 GTCTCTGTTTTCTGAGCA
1 GTCTCTGTTTTCAGATCA
157888 GTCTCTGTTTTCAGATCA
1 GTCTCTGTTTTCAGATCA
157906 GTCTCTGTTTTCAGATCA
1 GTCTCTGTTTTCAGATCA
157924 GTCT
1 GTCT
157928 TGGTTGTTGG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 53 1.00
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.46
Consensus pattern (18 bp):
GTCTCTGTTTTCAGATCA
Left flanking sequence: Indices 157352 -- 157851
GTGTTGCGGCTCTAAGCCTTTTCGATGCTTTCACCCGCACTAGTATATGGTGATATCAAACTCGA
AAGCCCGAACACAAGCATACCTTATTATTATGAAAAGGGGAAAGGGGCTAAAACCAAAGCTAAGG
AGCTGACAACTGCGAGACTAGGTTCAAGGAAAGACTTGGTATCTAATCCGTGCCTTCGTTCCGGC
TATAGTCCATTAGCGGGGAATACAAGCATGGCGAGAAAAGGAAGATGACTCTTCCCAACTCAAGT
CAAGCGTGAGGAAGGAGGGGAAGAACAACTAGAGAAAGGCTAAGTGAGGGCCATTCTCGCGAGTA
GGAACATGACAAACCTTTAGCAGTAAGCAGCAGAACTCCCCTTATTTTGGGAAAGCTTTAGCATT
CGATAGCAGGGCTAAACTAGAAGAGAGGATGCTTCCCACCCTTATACTTTTACGGAGGTTTCGTC
TTGTCAGTCTGGTTTATCCTCTCAGTTTTCTTGGTTTTCTTATCC
Right flanking sequence: Indices 157928 -- 158427
TGGTTGTTGGCTTAGTGAATTTCTTCATCTCATCTTTCAGAGTATCAATCTTACTTTTCATCTCG
GAGATCTCTCTATCCTTCTCTGAAATGACTTTGCTCATCTCTCTTTCCCTTTCACTAAGAATCTC
ACTCTTAGTCTGAAGGTGATTCATTTCATTCCTGAGAAAGAATAAGATTCTATCTCCCAAAATAG
GACTAACGTTTGACAGATCTCTGATATGAGTAGGTTCGGTATCAATCCATATGTTTTGGCTATTA
TATACTGGTAACCTTTTTGAATCAATGTTAATACCAAGTTTGTATAAACTTTCTTTCTTATGGAT
TTCCAGTTCTTTTAAATCAATTTTAAAGCTGGAAGTAACCTTAACATATTGTTTCCGAGATGGGT
CATCGTACTGTGACTGAAACCAATCCAGTGTCACAAAGCTTTTAGCAGCACCTTTGTGCTTGAGA
ACGATCTTTCCATCAGCGTCTTCCTCTATGTATCCATAAGATTTA
Found at i:215062 original size:39 final size:39
Alignment explanation
Indices: 215008--215086 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
214998 ATATTTTCTA
*
215008 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
215047 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
215086 T
1 T
215087 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 214508 -- 215007
GCCCACACCTGTGTAGAGTGGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCGACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTATAATCAATTTAAAACC
ATCTGCTAGAGGTTGTAACAATCCAAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACTGCTATGTACATTTTATATTTTCTA
Right flanking sequence: Indices 215087 -- 215586
GAAGGATGGGACCTTTTCTCGAACTCGAAAGGAGATTCTATTTCTTCTTCCAAGCCCTTCTTAGA
AGATGCAGTCAGTAAGCTCTCACTTATCTTCTTCATTTACGAAAATAGATAGATAAGAAAAGATG
TCAGCCTCTCTTTTCTCGCGGAACACTCACTTAATGGGGCTCTTTGAATTGGAAGACAACGACAA
AAGTGAAAGAAGGAGGTCTATTTCGTTGATCGATGTCAATGGACCAAGAAATCTGTCCTTTGCTG
AAAGCTCCTAGGGTAAGAAGAAATGAAAGGTAGGTTTTGTCAGTGATTAAAGGGAAAGGTCAGCT
GGAGCGAAAACCAATCAAACTCAGAAAGATAGGTAGATCGAGCGCGCTGAGGGAAATTCGAGAGA
TCCGGAGACATGGCCACTACTGGCCTACGGTCCTTGCATGCAGATTACGTAGCACATGCTAAGAG
CTGCGATGCCTGCCAGAGGTTTGCAGGAATCCAGCACAAGCCGGC
Done.