Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_062670
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 195825
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:10957 original size:18 final size:18
Alignment explanation
Indices: 10931--10971 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
10921 GACTGCAGTG
*
10931 TTGAACTGATTCTAATCC
1 TTGAACTGATTCGAATCC
* *
10949 TTGAGCTGATTGGAATCC
1 TTGAACTGATTCGAATCC
10967 TTGAA
1 TTGAA
10972 TTCGACCAGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGAACTGATTCGAATCC
Left flanking sequence: Indices 10431 -- 10930
GGAAGTCAAACCGTGATCGGGCTTGCCAAGAAGGCTCTTGTCCGCTGTCTCGGTTCTTTCTTTCA
ACGAAAGTTGACTAATCTGAAATCGGCGTTCTTAGATGTCCACGTATGATTTGATGTCAGAGACC
ACCAATGAGGTTTTGGCTTTAGTAACCTTTACTGAGAATTGCAAAACTATCCCTTGGTCGAAGGC
AACAATGAAGTTAACGATTCCAATTAAACGCTAGGCTGTGGTTCCTCAGTTCAGCTAATCCATTA
CGGGTTTCTGGAAGGCCTTTGAAGAGGAGAGGTTAAAAGAGCCCAATCCAGGTTTAGCTGTCTCA
GGCAAGAGTTGTTTAAAATGAGTGTTCGAGGCCCTTTTCAGGCGTGTGCTTCTGATTATAAGGGT
GGTTTACATGATCTGCTCGATACTCGAGATTTTGAATGGAATTGAATCGATCTTGAGCGCTAGCC
AGAGATGACCCTCTTTGAAGATCTAGCCTCACATGGACTGCAGTG
Right flanking sequence: Indices 10972 -- 11471
TTCGACCAGGGAATAGGTATCATCTCATTTTTCGTCTGATCGTCTGCGTCTTGTGCCTAGCTTCC
TACGAGCGGAGGAAAAGAAAAGCCTTTTTTCAAGTAAGTCAGGGAAGGAAGAAACTTCACTGCAG
GGGAAAGGCTTATGTCACTCTCAAAAGGAGCGATAGACCAGATGATCAGCAATAACCTGATCTTT
CTATATGAAATTTGACGATCATAGCTTGATTATAGTCTGGATCCCATTATCCTTCTAGAGGAAGA
ATGGAGTCCAGGTTAAAGGACGGGGGAAGATTTCTTCTTTCAATAGGCGTAGCTGCTTCGGATTT
GACAGAAGAAAAAGGGAGAAACTCTTCTTATTACGATTACGTGAGTTTTGACTATTTGGATTGGG
AAATAGCGCACTTCTCGCATTTAATGTGCCGGAGCGTCCCAAACAAAACAGTTGAAGTTGAGGAA
AGGCCTTCACTCGCGCATCCATATGGAGATCAGCCTACAGGCAAA
Found at i:17906 original size:17 final size:18
Alignment explanation
Indices: 17884--17917 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
17874 TACGCAATAT
17884 AAAATAAAAAGA-GAAGA
1 AAAATAAAAAGATGAAGA
*
17901 AAAATAGAAAGATGAAG
1 AAAATAAAAAGATGAAG
17918 GAACAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.09
Consensus pattern (18 bp):
AAAATAAAAAGATGAAGA
Left flanking sequence: Indices 17384 -- 17883
GGGCAAAGGTACGACGAACTTGAGGATCGCCTCAAGCGGCACTTCGTTGGGGGGAGTGAAACGAG
CAATAGAATGGCCTTCGATGATATGGTGGAAAAACAACATATCATCGAAAAAAGCGTGGAGGAAG
AGCTGCTCATAGGTGATTTTCGTAGAGATCGCATTTTCGAAAAGCGGTATGAGATAAGGGAATGT
CTCTTTTATAGAAAGGGAGTTCCACTGAAGGAAAAAACTTTGGATTCTTATTTAAAAGAAATTCA
AAAGAACCCTACTCGCAGCAAGCCACATTGCAAAATACTGAGGAAAATAAAAGCTTTTAAGATTG
ATTTATTCTTCTAAATAGCTAAGAATAGACAGAATTTCTCATTATGAGAGAGCCATTTTAAAGAG
TATAAAAACAGAATTACTACAATCCCTTTTAGAAAAAGGTGGCTTAACTAACGAAAGAAAAATGG
AACCAGATACATTCTTAAAGGAAAGCGCTTTGCCTTACGCAATAT
Right flanking sequence: Indices 17918 -- 18417
GAACAAAGTTGACACAATCCCTTTCTTTCCGTTGGTCAACAACCAACAAAACAAAATCGTTTAGT
TCTTCACTACTCGTACAGGAAGGCCTCTCTTTCTGTATGGGGGGAATCCTTTATTCTCAATCAAG
ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCCTCTTTAC
TTTCTATATTGCCATATGCAATGATGGAGATGGACTACTTGGGATCAGCAGAATTCTAAAACTAC
GTAACCAACTGCTTTCACACCGTACGAACAACATCCGGAGCAAGGACCCCAACAGTTTGGAAGAT
ATCTTGAGAAAAGGTTTTAGCACCGGTCTCTCCTATATGTACTCCAGTTTATTCGAAGTCTCCCA
ATGGTGTAAGGCCGTCGACTTATTGGGAAAAAGGAGGAAGATCACTTTGATCTCTTGTTTCGGAG
AAATCAGTGGCTCACGAGGAATGGAAAGGAACATATTCTATTTGA
Found at i:24978 original size:20 final size:20
Alignment explanation
Indices: 24953--24992 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
24943 TCTAGAGTCC
24953 CTAAGAAATTACTGTAAGAT
1 CTAAGAAATTACTGTAAGAT
24973 CTAAGAAATTACTGTAAGAT
1 CTAAGAAATTACTGTAAGAT
24993 GTGAATGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (20 bp):
CTAAGAAATTACTGTAAGAT
Left flanking sequence: Indices 24453 -- 24952
ACCGATGGGTCTTGTTCTAAGCCCAACCCTCTCGTCTTAGGGTAGGATATCCATAAACCTTCAAT
CACGGGAACCCTACGGCATCCTTAAGAGGCTCAAAGATCTTGAAAAAAGAACGAGTGAGGACGTG
TCCAATCTGAACCAAGCTCAAAGCTAAAAAAGAATAAGGAAACACACTCTTTGTCGGAACGAGGA
AGAACTGTTGACGTAAAACCCGCTTTTCCGCTCTTTCCCTCTCTTCTTTGCGACAAGCTTCGGAA
CCTAAGTCAGAGAGATGAGATCTCATTGCTAGTGTTCTTAGATAGTAGGGACCTGCTTGTGCCAA
TAGCAAAAAACCAGATCGTTGCCCGAACTACCCCTCTCAATGCCTGTTTTCTTACTTTCATTTCT
ATTGAGTAGTCAACGGCTCGCTCAAAGGAAAATCTAACAAGCCAATGTTTGCATTCGGGCGAGTG
CATAGCCATCGATCTCGAGTGATCCCAGTCTATGATCTAGAGTCC
Right flanking sequence: Indices 24993 -- 25492
GTGAATGATGCTTTTCTTTTTACTTTCCCTAAGATGAAGCTAGAGTCGTCAAAGTCCATAGTCGA
CGAAGAAAGAATGATTTAGTTCCGATTCCCTGTCTTCCTCTTTTCTAAAAAAAGGCTTCCATTTA
TCTAGAGTACGAGAGAAATTCAAAGAGGACTAGATTGACCCTGAGAATGTCATGATCTTGTTTTA
CAAGTATTTTCCTAACCAATCAACTTTCTTGAATCATACTTTTGTTGTGACAAATAAACTTATTA
AAAGGTTAACCAGAATATGCGAGACGATCAGATTCACATCAAATAGTTTTCCTTAATATGTCCCG
GATGCGTCTTCTTATAGCAGATTAGGAAAAGGATTGCTTAGTTTGGTAAATGAAAGATATGATAA
GGTGTTAGTAGAGTTATTTACTTTTTTTAATGGTGAATACGGTAGGTTATTTATTCTTGTTAGTC
TGGGGGTAAGTTGTACTACATGGTACCTGTTTGTACCTGGTGTTG
Found at i:29467 original size:16 final size:16
Alignment explanation
Indices: 29448--29478 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29438 TTTTGAGATC
*
29448 TTTTGTTTTTTTTCTT
1 TTTTCTTTTTTTTCTT
29464 TTTTCTTTTTTTTCT
1 TTTTCTTTTTTTTCT
29479 AAAGGCCCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (16 bp):
TTTTCTTTTTTTTCTT
Left flanking sequence: Indices 28948 -- 29447
ATGCTCCGCGCCTAGGTTCTTTTGTCGTTGGGGCTTACACCTTGTGACTCATTCATTCGGCAGAG
CGTTCCTCGGGCGTCGATCAATCCTGAATCACAGGCCGCTCTGTCATTGTCTGATTTTTGGTTGT
CTGATCACACTCGAAATTATGTATCTACTTATCATATTTTTGCCCCTGCTCGGTAGTTCCGTAGC
AGGGTTTTTCGGACGTTTTCTAGGATCAGAAGGAACCGCTATAATGACCACTACGTGCGTTTCAT
TCTCTTCGATCTTATCTTTGATTGCTTTTTAAAACGTCTTTTTAACTGAACTACAATGGTCTGAT
TCTTTTGAAGAAGATATGTAGGCAATTCGGCGTATACGCGGATGCGACCCCATCCACTCCCTCCA
TCCATGGATAAGGATAAAACAGCATCTTTCACTGTTTCGTTGGAAAAACGCAAATCTCATATTGA
CTTTCTTTCGGCCTACGCTAAGGGTACTTTAAAGATTTTGAGATC
Right flanking sequence: Indices 29479 -- 29978
AAAGGCCCCAGAACGCTAAAAGGTGAGGGAACCCAAGTTCTCTTTCTAAAAAATAAAAAGAAAAA
TAAGTGACTATAAGGAACCAACGATTCTCGATTCTTAAACAACCTATCTTCTCCACACTGAATCA
GCATTTGATAGATTATCCAACCCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTCCGTTAGCTG
GTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCATGTG
GATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTTA
TATGCATGCTAATGGGGCAAGTATGTTTCTCATTGTGGTTTACCTTCATCTTTTTCGTGGTCTAT
ATCATGCGAGTTATAGCAGTCCTAGGGAATTTGTTCGGTGTCTCGGAGTTGTAATCTTACTATTA
ATGATTGTGACAGCTTTTATAGGATACGTACCACCTTGGGGTCAG
Found at i:43567 original size:15 final size:16
Alignment explanation
Indices: 43542--43576 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
43532 AAATATATCA
43542 AAAAAGAAAAAGAAAG
1 AAAAAGAAAAAGAAAG
43558 AAAAAG-AAAAGAAAG
1 AAAAAGAAAAAGAAAG
43573 AAAA
1 AAAA
43577 TAAAAAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAG
Left flanking sequence: Indices 43042 -- 43541
TAGCACTACTTAGTGACTAGGAGCCTTTGCGCGTTCTTTTTGTTTGATCGGCCTATCTTCCTTCT
TTCTATAAGCAAGCTCCCTCCGGCTGTCCAGGGGCTGGGCGGCTCTCGGTTCTTGAGGGGGATTA
GGCGGCAGTTGAAAGAGCTGCTCGAAAGCTTGACGAAGAAGCGAAAAAGGCCTATATATAATATT
CTTTTTAGTACAAGGGCTTTTTACTAGTCAAGTGGTAAGGTAGGGCGCTATTCGATGAAGAAAAC
ATCTTTTAGGAAAGTGGTTCAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAATCCTTGTGTC
AGTGGTTCGAATCCACTTCTAAGCGGGCCAAGGGTCCAAAGGCCGGATTTTCAAATTCAAGTGCA
AGAGTAAGCCAAAAAATGTGAGCGCTCCTGCACTATACGGCTTTTTGCGTCGCCCTATCTTGCTT
TCAAAATATTTATATATTTAAAATGAAATTCTAGAAAATATATCA
Right flanking sequence: Indices 43577 -- 44076
TAAAAAAGGTTTCTTAGGTTCTCGCGTCCCTGTGCCCAAAAGGAAGGGTGAGTTCGGTTTGAGTG
TTCATCGATCGGGTGGATCTATATGCTCCGGGGTGGTGAGACGAGGTGTAGCGCAGTCTGGTCAG
CGCATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCTTGATGTGAGGCATTCCG
TCAGCAAATACTCAAATATGAACATCCATCGACCGTTACCACTTCCTCTTACTCGTGACTCGTAT
ATGTAGCAAGCACACGAGACCTTTACTCAGCAACTTTGCTTAGAAACCTTTTTCCAGTTTCTTTA
TGCCCAGCTCCCTTAGTTTTCTGATCAAATGATCAGTTATCCTTCCTACAATCCGGCGAAATTCG
GGTATATAAGTGTATCCTTATGGGTATGCAAGCACTAGAACAGGGAAGGACGACGTACTATGATA
CTTTCTGTTTTGTCGAGCCTTGCTTTGGTCTCTGGTTTGATGGTT
Found at i:43582 original size:15 final size:14
Alignment explanation
Indices: 43543--43582 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 14
43533 AATATATCAA
43543 AAAAGAAAAAGAAAG
1 AAAA-AAAAAGAAAG
43558 AAAAAGAAAAGAAAG
1 AAAAA-AAAAGAAAG
43573 AAAATAAAAA
1 AAAA-AAAAA
43583 AGGTTTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAGAAAG
Left flanking sequence: Indices 43043 -- 43542
AGCACTACTTAGTGACTAGGAGCCTTTGCGCGTTCTTTTTGTTTGATCGGCCTATCTTCCTTCTT
TCTATAAGCAAGCTCCCTCCGGCTGTCCAGGGGCTGGGCGGCTCTCGGTTCTTGAGGGGGATTAG
GCGGCAGTTGAAAGAGCTGCTCGAAAGCTTGACGAAGAAGCGAAAAAGGCCTATATATAATATTC
TTTTTAGTACAAGGGCTTTTTACTAGTCAAGTGGTAAGGTAGGGCGCTATTCGATGAAGAAAACA
TCTTTTAGGAAAGTGGTTCAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAATCCTTGTGTCA
GTGGTTCGAATCCACTTCTAAGCGGGCCAAGGGTCCAAAGGCCGGATTTTCAAATTCAAGTGCAA
GAGTAAGCCAAAAAATGTGAGCGCTCCTGCACTATACGGCTTTTTGCGTCGCCCTATCTTGCTTT
CAAAATATTTATATATTTAAAATGAAATTCTAGAAAATATATCAA
Right flanking sequence: Indices 43583 -- 44082
AGGTTTCTTAGGTTCTCGCGTCCCTGTGCCCAAAAGGAAGGGTGAGTTCGGTTTGAGTGTTCATC
GATCGGGTGGATCTATATGCTCCGGGGTGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCATC
TGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCTTGATGTGAGGCATTCCGTCAGCA
AATACTCAAATATGAACATCCATCGACCGTTACCACTTCCTCTTACTCGTGACTCGTATATGTAG
CAAGCACACGAGACCTTTACTCAGCAACTTTGCTTAGAAACCTTTTTCCAGTTTCTTTATGCCCA
GCTCCCTTAGTTTTCTGATCAAATGATCAGTTATCCTTCCTACAATCCGGCGAAATTCGGGTATA
TAAGTGTATCCTTATGGGTATGCAAGCACTAGAACAGGGAAGGACGACGTACTATGATACTTTCT
GTTTTGTCGAGCCTTGCTTTGGTCTCTGGTTTGATGGTTGTACGT
Found at i:50097 original size:15 final size:15
Alignment explanation
Indices: 50077--50106 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50067 ATGAAACTAA
50077 TCATCTTTTTTTTAG
1 TCATCTTTTTTTTAG
50092 TCATCTTTTTTTTAG
1 TCATCTTTTTTTTAG
50107 ATGGAAGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (15 bp):
TCATCTTTTTTTTAG
Left flanking sequence: Indices 49577 -- 50076
AAAAATTTGCTTGCCTTGAGTGGACAAGGTCAGACAGTACGCCCACTAGGTAAAACAGTACGCCC
ACTAGAGCCTTCATACTATTACTCAAGTACACTGAACACTCACCCAATCTTGCTTGAAAGCGGGG
TGGAATCAATAAACTCGCATACCTTGAATCTAGCCTGCAATCCTTTCTCACTTAGCTTAGGAGAA
AGTAAGCAAGACTTGATACGCTAATTTATTCTTTTAAAAAATTTAGAGTTACAAAGTCTTATTGC
AGACCTTCGTCTTCACGGGTTGTTGTTGAAACCGACTCCTCCGCTTGGCGTTGTCCCTATAGTTG
AACTGCTAATGCCTCCGATTAGAGATTTCACAATGCCATAGGATTGATTGAAGTTTCTGGCCGGG
TAACCTTTCATTCCTACACCCAGAATAAAGGCTTCCCTGCCGTAGTTGGGTTCATTAGGTCGTTT
GCCTTCGGCCATTTAAGAATGATCCATTTATATAGATGAAACTAA
Right flanking sequence: Indices 50107 -- 50606
ATGGAAGCCGGTTCCACGACTTTAGTGGAAATGATGATCCTGCTCCCCCTGAAAGTATCAACTAC
CTGAGGCTAAGGCGGATTTGTCAACGGCTGCGCTGCTGGCAATGATTAGAATAGCTATGTTGCTC
AAACCTACCGGCGCCTTTTTTTAATAGAATGAAGTTCCCGAATAGAAAAAAGAAGGATATCTGGT
TTCAAACTAGATATAGATGTCCGGGAAGTGCTTCCTTGCATTAAAGCACATTCCGGGAGTGAAAG
GTCATAGGGCTCATAGACATTATCTATTTCTTATCTTTCCTTTATGGGGATCATAGATCTCTCTT
TTCAAAGTTGGCAAAGTGAGAACGCTGGTTCCGCAATAACCAAGTCAATCCAATCCTCAAGGGGA
GAGGGGCCCGTATCCTGGGACTTAACTTAAGGATTTAGGGATCCCTCAAAGGACCGGGTTCAGGC
TCAACCAAGTCTTCGTCCACCCTTTCTCGAACCAGATCCATGCCT
Found at i:93043 original size:18 final size:18
Alignment explanation
Indices: 93022--93064 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
93012 CAACCTTGTT
93022 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
93040 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
93058 GACTATG
1 GACTATG
93065 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 92522 -- 93021
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 93065 -- 93564
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCGATTCA
AAGAGCACTGAAATGAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGG
GAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGT
CAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGAC
CGATTCACTCTGCGTAGATTGACTGAACGCAGAAAACCTTCCACTGGCAGGCGATCGTGTTTTTC
ACAGGATTTATCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAA
ACCTTCCCCGATTGACAGAACGTTCCGCTACTGACACTTGAAAAAGCTGCTTTCAAGGTCTCGTC
GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGG
Found at i:115999 original size:17 final size:18
Alignment explanation
Indices: 115977--116010 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
115967 TACGCAATAT
115977 AAAATAAAAAGA-GAAGA
1 AAAATAAAAAGATGAAGA
*
115994 AAAATAGAAAGATGAAG
1 AAAATAAAAAGATGAAG
116011 GAACAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.09
Consensus pattern (18 bp):
AAAATAAAAAGATGAAGA
Left flanking sequence: Indices 115477 -- 115976
TGTGATCTCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGAC
CTGCTATTAACGTCGGCTTATCTGTCAGTCGTGTTGGGTCTGCCGCTCAGTTGAAAACTATGAAA
CAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCCTTGCTCAATT
TGGGTCAGACCTGGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTAC
CGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTTTAGTCATTTATGCAGCTGTC
AATGGATTCTGTGATCGAATGCCACTAGACAGAATTTCTCATTATGAGAGAGCCATTTTAAAGAG
TATAAAAACAGAATTACTACAATCCCTTTTAGAAAAAGGTGGCTTAACTAACGAAAGAAAAATGG
AACCAGATACATTCTTAAAGGAAAGCGCTTTGCCTTACGCAATAT
Right flanking sequence: Indices 116011 -- 116510
GAACAAAGTTGACACAATCCCTTTCTTTCCGTTGGTCAACAACCAACAAAACAAAATCGTTTAGT
TCTTCACTACTCGTACAGGAAGGCCTCTCTTTCTGTATGGGGGGAATCCTTTATTCTCAATCAAG
ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCCTCTTTAC
TTTCTATATTGCCATATGCAATGATGGAGATGGACTACTTGGGATCAGCAGAATTCTAAAACTAC
GTAACCAACTGCTTTCACACCGTACGAACAACATCCGGAGCAAGGACCCCAACAGTTTGGAAGAT
ATCTTGAGAAAAGGTTTTAGCACCGGTCTCTCCTATATGTACTCCAGTTTATTCGAAGTCTCCCA
ATGGTGTAAGGCCGTCGACTTATTGGGAAAAAGGAGGAAGATCACTTTGATCTCTTGTTTCGGAG
AAATCAGTGGCTCACGAGGAATGGAAAGGAACATATTCTATTTGA
Found at i:123071 original size:20 final size:20
Alignment explanation
Indices: 123046--123085 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
123036 TCTAGAGTCC
123046 CTAAGAAATTACTGTAAGAT
1 CTAAGAAATTACTGTAAGAT
123066 CTAAGAAATTACTGTAAGAT
1 CTAAGAAATTACTGTAAGAT
123086 GTGAATGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (20 bp):
CTAAGAAATTACTGTAAGAT
Left flanking sequence: Indices 122546 -- 123045
ACCGATGGGTCTTGTTCTAAGCCCAACCCTCTCGTCTTAGGGTAGGATATCCATAAACCTTCAAT
CACGGGAACCCTACGGCATCCTTAAGAGGCTCAAAGATCTTGAAAAAAGAACGAGTGAGGACGTG
TCCAATCTGAACCAAGCTCAAAGCTAAAAAAGAATAAGGAAACACACTCTTTGTCGGAACGAGGA
AGAACTGTTGACGTAAAACCCGCTTTTCCGCTCTTTCCCTCTCTTCTTTGCGACAAGCTTCGGAA
CCTAAGTCAGAGAGATGAGATCTCATTGCTAGTGTTCTTAGATAGTAGGGACCTGCTTGTGCCAA
TAGCAAAAAACCAGATCGTTGCCCGAACTACCCCTCTCAATGCCTGTTTTCTTACTTTCATTTCT
ATTGAGTAGTCAACGGCTCGCTCAAAGGAAAATCTAACAAGCCAATGTTTGCATTCGGGCGAGTG
CATAGCCATCGATCTCGAGTGATCCCAGTCTATGATCTAGAGTCC
Right flanking sequence: Indices 123086 -- 123585
GTGAATGATGCTTTTCTTTTTACTTTCCCTAAGATGAAGCTAGAGTCGTCAAAGTCCATAGTCGA
CGAAGAAAGAATGATTTAGTTCCGATTCCCTGTCTTCCTCTTTTCTAAAAAAAGGCTTCCATTTA
TCTAGAGTACGAGAGAAATTCAAAGAGGACTAGATTGACCCTGAGAATGTCATGATCTTGTTTTA
CAAGTATTTTCCTAACCAATCAACTTTCTTGAATCATACTTTTGTTGTGACAAATAAACTTATTA
AAAGGTTAACCAGAATATGCGAGACGATCAGATTCACATCAAATAGTTTTCCTTAATATGTCCCG
GATGCGTCTTCTTATAGCAGATTAGGAAAAGGATTGCTTAGTTTGGTAAATGAAAGATATGATAA
GGTGTTAGTAGAGTTATTTACTTTTTTTAATGGTGAATACGGTAGGTTATTTATTCTTGTTAGTC
TGGGGGTAAGTTGTACTACATGGTACCTGTTTGTACCTGGTGTTG
Found at i:135805 original size:39 final size:39
Alignment explanation
Indices: 135751--135829 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
135741 CTATTTTCTA
*
135751 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
135790 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
135829 T
1 T
135830 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 135251 -- 135750
GCCCACACCTGTGTAGAGTGGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCGACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTATAATCAATTTAAAACC
ATCTGCTAGAGGTTGTAACAATCCAAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACTGCTATGTACATTTTCTATTTTCTA
Right flanking sequence: Indices 135830 -- 136329
GAAGGATGGGACCTTTTCTCGAACTCGAAAGGAGATTCTATTTCTTCTTCCAAGCCCTTCTTAGA
AGATGCAGTCAGTAAGCTCTCACTTATCTTCTTCATTTACGAAAATAGATAGATAAGAAAAGATG
TCAGCCTCTCTTTTCTCGCGGAACACTCACTTAATGGGGCTCTTTGATTTGGAAGACAACGACAA
AAGTGAAAGAAGGAGGTCTATTTCGTTGATCGATGTCAATGGACCAAGAAATCTGTCCTTTGCTG
AAAGCTCCTAGGGTAAGAAGAAATGAAAGGTAGGTTTTGTCAGTGATTAAAGGGAAAGGTCAGCT
GGAGCGAAAACCAATCAAACTCAGAAAGATAGGTAGATCGAGCGCGCTGAGGGAAATTCGAGAGA
TCCGGAGACATGGCCACTACTGGCCTACGGTCCTTGCATGCAGATTACGTAGCACATGCTAAGAG
CTGCGATGCCTGCCAGAGGTTTGCAGGAATCCAGCACAAGCCGGC
Found at i:136600 original size:31 final size:31
Alignment explanation
Indices: 136565--136626 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
136555 GATACGCAGG
136565 CCGTACCATCGAAGAGTGTCATACTTTGCGT
1 CCGTACCATCGAAGAGTGTCATACTTTGCGT
136596 CCGTACCATCGAAGAGTGTCATACTTTGCGT
1 CCGTACCATCGAAGAGTGTCATACTTTGCGT
136627 GATGTCATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (31 bp):
CCGTACCATCGAAGAGTGTCATACTTTGCGT
Left flanking sequence: Indices 136065 -- 136564
GGACCAAGAAATCTGTCCTTTGCTGAAAGCTCCTAGGGTAAGAAGAAATGAAAGGTAGGTTTTGT
CAGTGATTAAAGGGAAAGGTCAGCTGGAGCGAAAACCAATCAAACTCAGAAAGATAGGTAGATCG
AGCGCGCTGAGGGAAATTCGAGAGATCCGGAGACATGGCCACTACTGGCCTACGGTCCTTGCATG
CAGATTACGTAGCACATGCTAAGAGCTGCGATGCCTGCCAGAGGTTTGCAGGAATCCAGCACAAG
CCGGCTTCCGAGTTATACCCGATTATAAAGCCTTGGCCGTTTCGAGGGTGGGCCATGGATATCAT
CGGAAAGATCTATCCCAGATCTTAAAGAGGTCATACTTTTCTCCTAGTATAGTAGCTACGGCCCA
GCCTTCTCCACCTTCTGCCCTGTAAAACTTTCTCTGCCCAGAGATAAACCACTCCCCTGGCCTCC
TGGTCTCGACTATTCAAAGTTCTGTCCATTTCACCGATACGCAGG
Right flanking sequence: Indices 136627 -- 137126
GATGTCATCTAGATGAAAATCTTCTCAATTGGAACGAAGTTAAGGCATACCTTAAAGCCGCCAAT
GTCACTGAAGCTACTGGGGATCTATACTAATCCAATGCCACAACATCAAGGGGGACAAGTCACCA
CTCAGGGACCTACACCGGTACAAACTAATCCAGGACTTTCTGCCAGCGCTAACACCATCCGAGCT
TGCACTGCCGCTCGAAGAGAGATGCCTGTGAGACCCTCTCAAGTTCTTTCATTCGAAGGAGGTTC
TGAGAATTCAAAAGTCCGAAGTCACTTTCTTTGTCCCTAGGAATCTAAGTTCCAAAAGCAGACGA
AATCACTATGGAACCGGACCTCCTCGCTGCCGCTTAATTCATTACCAGGAAGAGGCAAATTCGTT
TTTTTAGTAAGCCCTATTAGCTAGTAAGGGTGGGTTGAAAAGGTAAAGAAGGAAGAATGGATCCG
AACGAATGCATGGGCAGGTGAAAAGAGCCCTTTTTTTTAATCCCC
Found at i:140634 original size:23 final size:23
Alignment explanation
Indices: 140608--140660 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
140598 TTTTCTAGAT
140608 TAAAAAAGAATTCTCTATATATA
1 TAAAAAAGAATTCTCTATATATA
* * * *
140631 TAAAATAGAATTCTTTATCTATC
1 TAAAAAAGAATTCTCTATATATA
140654 TAAAAAA
1 TAAAAAA
140661 AAGATATTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (23 bp):
TAAAAAAGAATTCTCTATATATA
Left flanking sequence: Indices 140108 -- 140607
TTAAAATGTCCCCAGACAGCCAGCCCTCACCAGGCTGCTAGCATTGCTAAATGCTCCGCCACGAA
GCAAGCTCTCCCGAATACGACAGATGCGGAAGTGGGGAAGCCGGAAGTGGCTAAAGAAGTCGGAG
GAAGAAAGTAGTTGGACAACTGTATACACGAGGGTACATTAGTCTTCTGGGAATTGGCAACATTG
ACAGAAAGGGGAAAGGGTAGGAATACACTTTTATAGGTGTAGCTATACTAAATTGGCCTAACCTT
CGGTTCCCGTAACCAAGTTTTTCTTTATCATTCCTTTTGTACTTTTTCTTACTTCATCCATACTT
TTTTACTTTTTAGGAAGTGTGGGGGGCAAACGGCGCCCTCTACTTCTACTTCTAACTAAAGGCGA
AGAGCCGGCATTGCAAGCAAATAGAGAGCCTCCGCCCGGTTGCGAGCCGGAAAGCGTACCGGCAG
TTTGAGTCGCGAAAGGGCCGCTTGCTTAACTTCATTTTTCTAGAT
Right flanking sequence: Indices 140661 -- 141160
AAGATATTTAGAATTTTTTCTTTTCCAATTGTTCATTCCTGGGGAGAGGAAGAAGCAGATAGAGC
AAAGGCCTCCTCTTTCCGTTCGCTCTTCCCGAAGTGAGCGAATTGCATGTAGAGATCCGTAGGGG
CTTATAGTTTAATTGGTTGAAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGT
GATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCCTGCTCTTCTCTTTCAGCCCTTGCTGG
TGAAAGTCTTAGAATGAATGTTGGCCTAGATAGAGGAATAAAAACTAGCTCGACCGGAAGGGAGA
GGATAGGCGAATCAGTAACTGAAATGAAAGCTGGAGTCAGACAGTCAGTTGGAGAGCTAGGATGA
AGAAGTAGGAAGGGGTATTCGAAAGGCTTTGAGAAGAGGGGCAACAGTGAAGATGCCGAGAATGG
CCGTGTCTATGGGGATTACCGGTCTTAGTAAGAATCTGTTGCAAA
Found at i:140820 original size:25 final size:25
Alignment explanation
Indices: 140786--140836 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
140776 AGAGATCCGT
140786 AGGGGCTTATAGTTTAATTGGTTGA
1 AGGGGCTTATAGTTTAATTGGTTGA
140811 AGGGGCTTATAGTTTAATTGGTTGA
1 AGGGGCTTATAGTTTAATTGGTTGA
140836 A
1 A
140837 ACGTACCGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.04, G:0.31, T:0.39
Consensus pattern (25 bp):
AGGGGCTTATAGTTTAATTGGTTGA
Left flanking sequence: Indices 140286 -- 140785
GGGAATTGGCAACATTGACAGAAAGGGGAAAGGGTAGGAATACACTTTTATAGGTGTAGCTATAC
TAAATTGGCCTAACCTTCGGTTCCCGTAACCAAGTTTTTCTTTATCATTCCTTTTGTACTTTTTC
TTACTTCATCCATACTTTTTTACTTTTTAGGAAGTGTGGGGGGCAAACGGCGCCCTCTACTTCTA
CTTCTAACTAAAGGCGAAGAGCCGGCATTGCAAGCAAATAGAGAGCCTCCGCCCGGTTGCGAGCC
GGAAAGCGTACCGGCAGTTTGAGTCGCGAAAGGGCCGCTTGCTTAACTTCATTTTTCTAGATTAA
AAAAGAATTCTCTATATATATAAAATAGAATTCTTTATCTATCTAAAAAAAAGATATTTAGAATT
TTTTCTTTTCCAATTGTTCATTCCTGGGGAGAGGAAGAAGCAGATAGAGCAAAGGCCTCCTCTTT
CCGTTCGCTCTTCCCGAAGTGAGCGAATTGCATGTAGAGATCCGT
Right flanking sequence: Indices 140837 -- 141336
ACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCCTGCTCTT
CTCTTTCAGCCCTTGCTGGTGAAAGTCTTAGAATGAATGTTGGCCTAGATAGAGGAATAAAAACT
AGCTCGACCGGAAGGGAGAGGATAGGCGAATCAGTAACTGAAATGAAAGCTGGAGTCAGACAGTC
AGTTGGAGAGCTAGGATGAAGAAGTAGGAAGGGGTATTCGAAAGGCTTTGAGAAGAGGGGCAACA
GTGAAGATGCCGAGAATGGCCGTGTCTATGGGGATTACCGGTCTTAGTAAGAATCTGTTGCAAAT
GCATGTGAGGGAGGAATGCCCGCATTAAGATTTAAAACTTGTCGTCTACTTGAAGGAAATGTTTG
GAACAGGGAACTTACAATAATACAACGCCGCATTCTTCGAAGATTGAGGAACAAGACGAGATCTT
TTAAGAGAATGATTTATTCGAGAAAAAATCTGAATAGTTACATCC
Found at i:158573 original size:17 final size:18
Alignment explanation
Indices: 158551--158584 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
158541 TACGCAATAT
158551 AAAATAAAAAGA-GAAGA
1 AAAATAAAAAGATGAAGA
*
158568 AAAATAGAAAGATGAAG
1 AAAATAAAAAGATGAAG
158585 GAACAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.09
Consensus pattern (18 bp):
AAAATAAAAAGATGAAGA
Left flanking sequence: Indices 158051 -- 158550
TGTGATCTCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGAC
CTGCTATTAACGTCGGCTTATCTGTCAGTCGTGTTGGGTCTGCCGCTCAGTTGAAAACTATGAAA
CAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCCTTGCTCAATT
TGGGTCAGACCTGGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTAC
CGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTTTAGTCATTTATGCAGCTGTC
AATGGATTCTGTGATCGAATGCCACTAGACAGAATTTCTCATTATGAGAGAGCCATTTTAAAGAG
TATAAAAACAGAATTACTACAATCCCTTTTAGAAAAAGGTGGCTTAACTAACGAAAGAAAAATGG
AACCAGATACATTCTTAAAGGAAAGCGCTTTGCCTTACGCAATAT
Right flanking sequence: Indices 158585 -- 159084
GAACAAAGTTGACACAATCCCTTTCTTTCCGTTGGTCAACAACCAACCATATACACCGCCAAAGA
AGTCTGGCGTAAAACAAGACTTCTCAAGTCCTGCTTACTATTACTATAAATAAAGTAGTAAGTAA
AAGAAGTCAACAACTGAAGTCCTTATGAACCCACCGAATCCAAATATCATTTTTGAGGGGCAACC
AACCCCTAGTGAAAAATTGTTTATGATCTCCTGAAGCACCGATCTGAACGTAGGGGTCTCCCTAA
ATTCGGGAACAGCTATTGAAAGTACAGAATCTGATGCCCAAAGCGCTCCACCTTTTGATGAAATC
TTGGAAAGCATCACAAATATTTCACTTACTAGAATCAAAAGAAAGGCAATTACCTACCGAATGGT
CCATGCCGGACCTTGTTCGGGCAGTAAATGGATAATATTTCAGTACCCTAGTCAGGTTTATGACT
TACAAGGCAAAGGAACTCTTAGTTGGTTATGGGAGGAGATTGTAA
Found at i:167781 original size:18 final size:17
Alignment explanation
Indices: 167758--167799 Score: 75
Period size: 18 Copynumber: 2.4 Consensus size: 17
167748 ACCTTTCTTC
167758 TCTTTTTTCTTTCTTTTT
1 TCTTTTTTCTTTC-TTTT
167776 TCTTTTTTCTTTCTTTT
1 TCTTTTTTCTTTCTTTT
167793 TCTTTTT
1 TCTTTTT
167800 AGAAAGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TCTTTTTTCTTTCTTTT
Left flanking sequence: Indices 167258 -- 167757
AAACTTTTGGCTTGCTACAAGCTGGGCTCAGGGACTGCAGTCAGCCGCTTCCCCTGTAGTCGTCA
GCTCGTTTTTGACAGATCCGATCGGGTGTTCATAATCTGGAGTAAAAGGATTCGAACCTTTGCAT
GCCGGTACCAAAAACCGATGCCTTACCACTTGGCTATACTCCATACGGCCTGTTTTGGACGGTAA
ACGGGGAGAGGGGGAAGGGGGAAGCAGGGCTCGAAGAACGAGCCGAGCCGCGCAAGGACGCGGGG
ATATAGCAAGTAAGCAGAAAGGTTCTCCCTTTAGGACCGACTACAACAAGTTCACGACTCTAATA
GAAAGAAAGGGTAAGCTCTCTGCTCTATTTGCTTGCAATGCTATGCCTATCAAAGTTGGCGAACG
CTTCTGTAACCTTAGACTCGTTACGCTGTTCGACTGAACTCGTTGGCTCCACGTCCACCGAAAGT
AGGTAACCTTCGTCACCGTTGGTTCCCGTAACCAAACCTTTCTTC
Right flanking sequence: Indices 167800 -- 168299
AGAAAGAAGAAGGCTCCTGAATCAGCGCAGGGAAAAATCCGCAAGCAGGAGAACTGTACTAACCT
GCCGCCGGTTACTTTATCAGGGCTCCGCAGGAGAAGAAAGAAGGTCCGGGTCCAATTTCTAATGA
AGCGAAGGTCCCCCTTACTCCCTATTCTCTCTTAAAGCTTTATAAAGCTCTAAAAAGGGTTGGTT
AAGAACTATTGACTGTAAACGATAGCAGTTACAGTCACTCAATGGATATGCTCGCCTTTGGAATG
AAGATGGATGAACAGGCACTTGAGCCTGGAACTGATGAAATTCGGGTAAAACAAGGAACCGGTCA
CTATACCGGGGGGCGAGGCATGACCGCGACTTAAGATTCAAGTACCGTTGAAAAGACTAAAGGAA
CGGGGGAATGACTACCTGTAATAAAGCACAGGCTAATACGAGCCGACCAGAAGAAGCAAGGCTTT
AGATTACCAGATCCTGGACACAATCTTCCTAGAGATGGAGAGCCC
Found at i:167793 original size:11 final size:11
Alignment explanation
Indices: 167751--167791 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
167741 TAACCAAACC
167751 TTTCTTCTCTTT
1 TTTCTT-TCTTT
167763 TTTCTTTCTTT
1 TTTCTTTCTTT
167774 TTTCTTT-TTT
1 TTTCTTTCTTT
167784 CTTTCTTT
1 -TTTCTTT
167792 TTCTTTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 3 0.11
11 19 0.68
12 6 0.21
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTCTTTCTTT
Left flanking sequence: Indices 167251 -- 167750
TCAAGTCAAACTTTTGGCTTGCTACAAGCTGGGCTCAGGGACTGCAGTCAGCCGCTTCCCCTGTA
GTCGTCAGCTCGTTTTTGACAGATCCGATCGGGTGTTCATAATCTGGAGTAAAAGGATTCGAACC
TTTGCATGCCGGTACCAAAAACCGATGCCTTACCACTTGGCTATACTCCATACGGCCTGTTTTGG
ACGGTAAACGGGGAGAGGGGGAAGGGGGAAGCAGGGCTCGAAGAACGAGCCGAGCCGCGCAAGGA
CGCGGGGATATAGCAAGTAAGCAGAAAGGTTCTCCCTTTAGGACCGACTACAACAAGTTCACGAC
TCTAATAGAAAGAAAGGGTAAGCTCTCTGCTCTATTTGCTTGCAATGCTATGCCTATCAAAGTTG
GCGAACGCTTCTGTAACCTTAGACTCGTTACGCTGTTCGACTGAACTCGTTGGCTCCACGTCCAC
CGAAAGTAGGTAACCTTCGTCACCGTTGGTTCCCGTAACCAAACC
Right flanking sequence: Indices 167792 -- 168291
TTCTTTTTAGAAAGAAGAAGGCTCCTGAATCAGCGCAGGGAAAAATCCGCAAGCAGGAGAACTGT
ACTAACCTGCCGCCGGTTACTTTATCAGGGCTCCGCAGGAGAAGAAAGAAGGTCCGGGTCCAATT
TCTAATGAAGCGAAGGTCCCCCTTACTCCCTATTCTCTCTTAAAGCTTTATAAAGCTCTAAAAAG
GGTTGGTTAAGAACTATTGACTGTAAACGATAGCAGTTACAGTCACTCAATGGATATGCTCGCCT
TTGGAATGAAGATGGATGAACAGGCACTTGAGCCTGGAACTGATGAAATTCGGGTAAAACAAGGA
ACCGGTCACTATACCGGGGGGCGAGGCATGACCGCGACTTAAGATTCAAGTACCGTTGAAAAGAC
TAAAGGAACGGGGGAATGACTACCTGTAATAAAGCACAGGCTAATACGAGCCGACCAGAAGAAGC
AAGGCTTTAGATTACCAGATCCTGGACACAATCTTCCTAGAGATG
Found at i:175529 original size:19 final size:19
Alignment explanation
Indices: 175505--175545 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
175495 CCGGTGCGAC
* *
175505 CACTAAAGAATTGCTTATA
1 CACTAAACAACTGCTTATA
*
175524 CACTAAACAGCTGCTTATA
1 CACTAAACAACTGCTTATA
175543 CAC
1 CAC
175546 GCTTACTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (19 bp):
CACTAAACAACTGCTTATA
Left flanking sequence: Indices 175005 -- 175504
GTCAAGACCAGGCTCCCTAATGGAATGTTTAACCGATCCATTCCGGATCGACCGAATTGGTACGG
AAGTTGTAACATGGGAAAACCACGGAAAACACGACTTATTTGAATAACCCGGTGACCTACCAATT
GTAGAAGTAGGATTTTTGGCAAGCAATAAGCACTTAAATAATACAATTCAAGTGTACCATCTTCT
TTCTCATTTCGAGGAAAAGGTGCGGAAGGAAAAGGAAACAACGGAGGGATCCGAATCGGACCTAA
ATGGGAATGACATGAAAAGTCTTTTTCAAAACCTAGCATTAAGGGCGTTACGACGATATATGAGA
GGAATGGAGAAAAACTCGTGATTGGTGTGGAGGGGAAGGTCTGTTTATAATATAGTTCAAGAAAG
AGTCGTCTCATTTCCTTACTTCTTCGTTCTTTCTAATTCATTCACTTCAAGACTGGTTCTGAACG
CCGCGTAACATCATCTTCAACCAACCTCCATCGTACCGGTGCGAC
Right flanking sequence: Indices 175546 -- 176045
GCTTACTAAAAGACTGACTTTTATTCATATTCAATTCATTAGGCCAGCGTGAAACTAAGAAAGAT
AGATGTGCCTAAGGCGTAAGCAAACTGTGCACGCTAAGAGAAGAGGAGAGATGTTCGCAATGACT
ACCACAAGAAAGCCGCCCCCTATCTCTAAAAGGGCCCGTCACTTCGTTCGTACCTTCTTGGCTTA
GGCTTGCGACTTCACTTACTTTATGGCCTTGCCGCCTTTTTCTAGCAGAAGCTAAGCGCTTGAAA
AGCGCGCTAAGAAAGGTTGCTTCTGTCGGCCTTTATGTGCAACAGTCCACCAGTAGCGGAAGATA
GGGTTACCGTACATACAAGAGTCTTCCAGTTCTTACGGAAGCTCTTTCTTACCAGTCAAGTAGTA
CACTGTATCTTATCTTATAGCCCGGCGCGGCGGGTCGCCTTTTTAATTCAGTAGATAGAAGAAAG
TATTAGATAAGGAGTAGGTGAGTGAGTCCTCGCTGACCTGAGCGA
Found at i:184269 original size:24 final size:24
Alignment explanation
Indices: 184239--184291 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
184229 GTCTCTTCAT
184239 TAGCCGGAAGGAATTAGTCTCCAC
1 TAGCCGGAAGGAATTAGTCTCCAC
184263 TAGCCGGAAGGAATTAGTCTCCAC
1 TAGCCGGAAGGAATTAGTCTCCAC
184287 TAGCC
1 TAGCC
184292 TCATTCGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (24 bp):
TAGCCGGAAGGAATTAGTCTCCAC
Left flanking sequence: Indices 183739 -- 184238
TTGTTGCCCGTCTACTTAGTGAACTGGCAGGACGCGAAGATCAATTGATCAATACGAATCTCGAG
AGTGGATGGTTGATCGCCGCCTCCTTGTCCTGGAGGCTCTCCGGCCGGGGAGGGGCTTGCTATCG
TAACCTTTTTCCCGGTGTATGTGAGGGTGACGAACTCCTTTTTGTTCGGTCATAGGTTGGTCCAA
AGAACGAGAGTCGGCTTCCTTAAGTCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTG
TTAACTGACTGGTCGTAGGTTCAAATCCTACTTGGGGAGAATTTAGAGTTCTCGCTTTTCTGACC
TAGCGCCCCCTGTCCTTCTCCTTAGTTTCTAAACTAGCAGAATCGCAGGACATCAAAAGTGGGAA
GTTTCTTGTTGGTTTTTCTTCCTCACTCTCGAATAGGTGAACTTGGTTCGTTCAATTCTTAGGGA
GAAGAAGGATGGGAATGAATGGGAAGACTGGAGTAGTCTCTTCAT
Right flanking sequence: Indices 184292 -- 184791
TCATTCGAAGAACGAACAAGAAAAGGCTTACAGTTTAGGTAGGATAGATCGATGTGGTCCAATGG
CTAAAGCTCTGCCAGCTTCTTGTAGACTTACTTCTCTTTAGGCTCCGAGTTCTTTATTTATTATT
ATTTTATAAATGATTCTTCGCCACTAGTGGCAACGAAGTTCTTGGTAATTAGCAAGGGGGAAGGA
AGATCTCCACTCATTTCATTCATTCAGTGCCTGCGGTGAGGCGCGACCCACAACAAACGAAGGGG
GAAAGCTTGCTTGGCTTGCTGTAGCCCTATTTTTAGGCTTGGTAAGCGTAAGCTATTGTTGTAGG
CTCGAGAAGGGTAGGCTCGCAGCTTCGCTCAGCAGAAGAGCCTGACTTTCTATAATTAGTCAAGC
GCTAGCGCCCAACCGGGCTTTGAAGGGATAGGGAAAGGGAAGAAAAGAAAGAGGGTCACTCCTTT
TAGGAACATGGCTCGTTCATTCACTTGCTCATGAACTCGCAGCTT
Found at i:192555 original size:14 final size:14
Alignment explanation
Indices: 192522--192549 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
192512 GTGAAGGGCG
192522 CTAGTAAGTAATAA
1 CTAGTAAGTAATAA
192536 CTAGTAAGTAATAA
1 CTAGTAAGTAATAA
192550 TAAGTAGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
CTAGTAAGTAATAA
Left flanking sequence: Indices 192022 -- 192521
TAAATGACTTCACTTAATAGAGTCCTAAGGGCAGTCTCTTTGAGAAGGGGCCGTATTAGTTTTTA
TTAGCTGTCCCAGGGAAAAGAGTAAGTATTGGCTGTTGGCATGTCCGAGCTAAGATCGGTTGAGG
CGGGTAAGGTTGCCTAGCTTACTTGGTAAAGGACTCCTTTCTTTAGTTTAGCGGTCATGGATCGA
TTCTAGGTGGTTCACTTGTATACCCCTATTCTCAGAGTTCACGTTCTGATCTAGCAAATCGACTT
TTCAGAGGAGTTCCTTAGTTTTTGGACAGGACAGGTGGGAACCAGGAGGTAACGCGTCTGTTAAA
GCAATCGGGCAAATGCGTGTATACTAGCTTACTAGCTATAGCTGTTACTGTGCTTTCTGGATACC
TTTCCATGCTTTAACAAGCCAGCTACGCACCTTGCTCTTCTCTTATAAGCAAGTAGCTTTGATTT
GGGAATAAGCTGAAAGTCAAGTAGTATGAGTTGAAGTGAAGGGCG
Right flanking sequence: Indices 192550 -- 193049
TAAGTAGAGTGGAACACTGTTGGCTGAACAAAAGACGTATGACTTGAGAAAGTAAGATCTCCGAT
CTGTTGTCGGGAAAAGGGACCTAGCTAGATTCTCAAGCCACCCGCAACGGCCTTAGTCCTCCCAG
TTTCTCACTTCCCTCCGGTGCGGTAGATACTTAAGAGAGAGGGAGGGCAAAGCGGGGAACTCAAC
CAAGGAAAGGAGATTACTCAACAGGCTCTGTCCCTGTGCTAATAGACCCACTCCAATCCCGGGAA
CCCTACCTGAGCTACTAAAATCTTGGAAATCGACTAGCCTTACTTCTTTCGGGGCTCCATCCCTC
TTGACTATATAGGTAGGGGCTTAGCTGCTCCTAGTCAGATAAAAGTTCTATACTGGGGCTCTCGG
CAACCCTGAACTACTAAAAACCTGGCCCTTTGATGTGCTTGCCCAGCCTCTTCCACTAGAAAGAG
CTTTTCTCTTAAGGCTTCTTGCCAGTAGTGAGAAAAACCTTGCTT
Done.