Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_002511
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 368801
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:6163 original size:18 final size:18
Alignment explanation
Indices: 6140--6177 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
6130 AAGACAGTTC
*
6140 TTTTCTATTATATTAGTA
1 TTTTCTATTAGATTAGTA
6158 TTTTCTATTAGATTAGTA
1 TTTTCTATTAGATTAGTA
6176 TT
1 TT
6178 AGTTAGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (18 bp):
TTTTCTATTAGATTAGTA
Left flanking sequence: Indices 5640 -- 6139
TCGAAGCCATTGGATCCTTTCCATAATTCTTTAAGTCCCATAGGTTTAATCCTGTAGAATCTGAC
CCACTTTCTCATTGAGCGAAGGGTACGAAATAAATCCGATTGATTTTTCGATCAAAAGTACTATG
TAAAATCCTCGGTTTTTCCTCTTCCTCTATCCCTATCCCATAGATAGGTACAGCGTTTGAATCAA
TAGAGAACCTTTTCTTCTGCATGAATCGATATTATTACATTCCAATTCCTTTCCGATACCTCCCA
AGGAAAATCCCGAATTGGATCATTCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTGTG
CACTCTTCGAATAGGAATCCATTTTCTGACAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAG
ATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGCTCCGATCGATTGCGTAAAGCC
CGCGGTAGCAAGAGAACCGGGGAAAGTATACAGAAAAGACAGTTC
Right flanking sequence: Indices 6178 -- 6677
AGTTAGTGATCCCGGCTCAGTGAGTCCCTTCTTCCGTGATGAACTGTTGGCACCAGCCCGACATT
TTGTCTCTGTGGACCGAGGAGAAGGGGGGCTCGTCGGGAAGAGGATTGTACGATGAGAGAAGCAA
GGTGATTTATCATTTTCAAATATACAACACAGATTCTGGCAATGCAATGTAGTTGGACTCTCATG
TCGATCCGAATGGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGAT
AGCAAGTTCAAAATTCTGTCTCGGTAGGACATGTATTTCTATTACTATTACTATGAAATTCATAA
ATGAAGTGGTTAATGGTGGGGTTACCATTATCTTTTTTGGAGTGACGAATGCGGTATGTGTTCCT
AAGAAAAGCCATTTTTCCATTTTTCGGGGTTTCAAGGGGGCGTGGAAACACATAAGAACTCTTGA
ATGGAAATGGAAAAGAGATGGATTTTCCTTTGGAAAGGGTAAGAT
Found at i:10605 original size:40 final size:40
Alignment explanation
Indices: 10550--10630 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
10540 AAGCCCTCTG
*
10550 CAGCAACGCAAAGGCTTGAG-TCCTAACTCAACCTAATCTA
1 CAGCAACGCAAAGGCTTGAGTTAC-AACTCAACCTAATCTA
10590 CAGCAACGCAAAGGCTTGAGTTACAACTCAACCTAATCTA
1 CAGCAACGCAAAGGCTTGAGTTACAACTCAACCTAATCTA
10630 C
1 C
10631 GACTAGCAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 37 0.95
41 2 0.05
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.20
Consensus pattern (40 bp):
CAGCAACGCAAAGGCTTGAGTTACAACTCAACCTAATCTA
Left flanking sequence: Indices 10050 -- 10549
TAAGCTAGCAGCACAGAAGAACAGGATGAGCAGGATTTACAACAGGAGAGTCAGGCACAGACCTT
TGACAGAGGGAGACCTGGTGCTGAGAAGAACAGCAGCGGTAGGAAAGGGAAATGTACATGGAAAA
TTCACTGCCAACTGGGAAGGCCCCTACCAGATCTGCGAGCAGGTGGCACCAGGGTCATACAAGCT
CATGACTGTAGAAGGAGAACCACTGAAAAACAGCTTTAATGCAGATGTCCTGAAAAAGTACTTCG
TTTAAATATTGTCATTAGCAATATGCTTTGTAAGAAAGGCCAGTAGAGCCCAAGTATGAAATAAA
AGAACTCTTAAAGTTCTTATTATGAATTATTCGCACTAACATTTGCTCTTATCCGTGCACAACAC
AATTAGATGACGTTAATAGTCCTTTAACAAAAAGGGGCCCAAAACGCGTCAATAAGCGCAGAAAA
AAAAAAAGCAGAGGGAGGAGCATAGAGCCCAGCCAAAGCCCTCTG
Right flanking sequence: Indices 10631 -- 11130
GACTAGCAAGACACGAAGAACGACTGGCAAGGTTGAAGCATAAAGCTTAGCCCAAGCCCACAACA
GTCGAGGTAAAGACTGAGACCCGAGCTCAGTCAAGCCATATAACACGGTAAAGCTAGGCAAAGAT
CTAGCTAAAGCCAAACAGTCGCAAGGCGGGACATACAGCTCAATAAAGGCTGAAACACGAGGGCA
GCGGAAGTGTTTGTTAAAGGACTTACACACACGGAAGGCAAGTCTAAACAAGGCTATAACCTTGA
AAACCAATGAAACAGGTACAGCCAGTTACAGCAAAATGCGGCAGGTAATACTAAAATACCAAAAG
TTATCAACAAGGCTGCAACAGCTGACTACACCAACACCTCATACAGGAGAAATCGAAGCACAAGT
CTCTGTAGAGCCACAGGAAGAGCTAGGAGATAGCCGCCAAAACCATTAATCCTTGTTCTCAAAAG
GAGGAATGGGGAGCTCGCTAGGATGAACGTTTGCAACAATATAGT
Found at i:32030 original size:22 final size:21
Alignment explanation
Indices: 31979--32031 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
31969 CTTGGACTTG
* *
31979 GAGCTCACAAATGCGCTGTTT
1 GAGCTAACGAATGCGCTGTTT
32000 GAG-TGAACGAATGCGCTGTTAT
1 GAGCT-AACGAATGCGCTGTT-T
32022 GAGCTAACGA
1 GAGCTAACGA
32032 GTTTGACTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.04
21 16 0.59
22 9 0.33
23 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (21 bp):
GAGCTAACGAATGCGCTGTTT
Left flanking sequence: Indices 31479 -- 31978
ACATGTCGGTTGTTAACCAAGGGTATACCACTTGAGGGAGGGCAAAATCAATCAGATTCTGACCT
GAAAAGAATTCATTTATCTTGAACTTCTCCACTTCCCACCTAGAGCAGCTTCGCTCGCGGTGATC
TAATTATTGGACTAGCTGAACTAAGACTAAGTAGATCTTCTATAGCGACTGCCGGACCATTCCAT
TCATTGTCTTCTTCTCAACCTCTCCTCGGTTACTCTGAACTACCAAGCCAATCTCCAGTCGAAGG
AAAGAAGGACTGCTACTCTTCTTTGCCTACTTATTTAACCCCCTTTTTTTTGCAAGAGACGCTTT
GTCCACTTCCTAGCCAAAGCCCAATTCACCACGTGAAAGTTCGTCACTATCAATAGCTCCTTACT
TAGACCCTTCCTTCCCCATAGCCGCTGGCTCACGACCTTTCGACTCTCGCTAAAGAAGAGAAATT
CACATTCACCCTTAACTTCTCGTACCGGATAGGCTCTTGGACTTG
Right flanking sequence: Indices 32032 -- 32531
GTTTGACTTTTTTTCTGCTGAACTCGGAGAAGAGGATGGAAGAGGAGGTAGCGGTTCGTGCTTGA
GTTGAATCACTTGACTTTGGCCCTCTCTTTATATAAGTAGTAGATCCCCTTAAAGGGAAATGAAC
TAGGTAAAAGCTATAGGCAGCTACCTGGTAGGCAACTCGCCGGGAAGAGTCTATATCACCGATAG
GCCAATTAGATGGAATTACAGAAAGCTATATAAATTAGAAGAAGGAGCAAAGGGTTGAAAGCGGA
CAGATGCCATCGAATCGGATGTCTTCCTTCAATCCGCTCTTAGAGTTCGAGAATCCAAGCGCAGT
CAAGTCAGTACGTACCAATGCCTTCGGTCGGTAAGTCATTAAGGCCTGCTCTAGGTGACTTGGAA
GTGCCTGAAGCTAAGAAGTCAGTCTACTTTGACTTCTTCTAGGTCTTAGAAGCACAAGCGGGAGC
CAGGGGGAAGGCCTTCAGGCCGCTGGTGGAACTCCCAGGGAATGG
Found at i:40621 original size:17 final size:18
Alignment explanation
Indices: 40582--40624 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
40572 CCTCCAACCG
40582 GTAAAGCAGGAAATGGAA
1 GTAAAGCAGGAAATGGAA
*
40600 ATAAAGTCA-GAAA-GGAA
1 GTAAAG-CAGGAAATGGAA
40617 GTAAAGCA
1 GTAAAGCA
40625 ATAAAGGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.09
17 9 0.41
18 9 0.41
19 2 0.09
ACGTcount: A:0.53, C:0.07, G:0.28, T:0.12
Consensus pattern (18 bp):
GTAAAGCAGGAAATGGAA
Left flanking sequence: Indices 40082 -- 40581
TCATTTGCACATCGATACGTGCCTGCTAATGCTCCTTTTGGGACGAGAACGAACTGACTCTACAT
CTACTGAATCCACTACCCGCTCCTTCTTGGTCACAAAAAGAAACTGGCTCTACCTGTGCTCTCGC
TTCGGGTTCACTTAGGTAGGACACTAGCTCTCTTTTTAGGCTTTTAGCGCATATCATCAGTATGT
GAGTTGCTTCTTTCCTTTCTTTAGATTATAGCTCGCTCCCTCCGTCCACTAGAGAGACATGCGAA
GCCATAGAGGAAAGTCTAAGTGCAGTTCCTATTGAGTCAGATTGGGTAATTAGGGGAAACCTTTC
AGACTGAAGATCTTGCTATACATATTCGAAGTTCAGTTCGTTCCTATAGCATCTGATTGTGGGCA
TCTTGCTTCGAGTACATTCAAAAGGGAAGGTGTCCGTCAAAGAGAAAAGGAAGTAGACTTCACTT
CTTTCACAAACGGGGCTGAAACAGCTGAGTCTCTTCCTCCAACCG
Right flanking sequence: Indices 40625 -- 41124
ATAAAGGTATAGCAAAGCAAAAAAGGAATCAGGAAAGGCATACTAATACCACTAATTCAGTCTAA
TTGGCCTTAGCTAGAAAGCCAGGGGCGAAGAAAAAAGTCAGGATATTGGGATATACATAGCTATA
AAGGTAGCAAAGATCTACCAGGGATTTTATTAGCTCCTCGAAATGCATTCGCTCGCCCTTTCACA
AAGAAGCACCCCGGTACGATTCATTTCCATAGTGCACCCGAAGCCAAGGAAAGAGTTGGGATAAG
AATATCCCTGCAATCACAGGTAAGCTAAGCTGTAGTCTTGAATGTGCGGGCAAAAGGCCTCCGAC
AAAGTAAGCATCTTTGAGACTTCTCAGTGCATGAGGAATGAATGAAAGGGAAAAAAGGGAGATTT
TTTAGGCAGGGGAAGGATTTTAGTTTCAAGAAAGAATGCCATCGGATTAGACCGATTGGACAGAG
AGGACACAGCCTATTCGTTAACATCCGATTCAAAGCTACTGTCTT
Found at i:50774 original size:66 final size:66
Alignment explanation
Indices: 50668--50862 Score: 372
Period size: 66 Copynumber: 3.0 Consensus size: 66
50658 ATCCCTGATC
*
50668 CAGACGCTCCGGATGCATCTAGCAAATTCGCTTGGTAAGTATTGGAAGCAGCTCCGGCACCTAGT
1 CAGACGGTCCGGATGCATCTAGCAAATTCGCTTGGTAAGTATTGGAAGCAGCTCCGGCACCTAGT
50733 G
66 G
50734 CAGACGGTCCGGATGCATCTAGCAAATTCGCTTGGTAAGTATTGGAAGCAGCTCCGGCACCTAGT
1 CAGACGGTCCGGATGCATCTAGCAAATTCGCTTGGTAAGTATTGGAAGCAGCTCCGGCACCTAGT
50799 G
66 G
*
50800 CAGACGGTCCGGATGCATCTAGCAAATTCGCTTGGTAAGTATTGAAAGCAGCTCCGGCACCTA
1 CAGACGGTCCGGATGCATCTAGCAAATTCGCTTGGTAAGTATTGGAAGCAGCTCCGGCACCTA
50863 TTGATTTTGC
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 127 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (66 bp):
CAGACGGTCCGGATGCATCTAGCAAATTCGCTTGGTAAGTATTGGAAGCAGCTCCGGCACCTAGT
G
Left flanking sequence: Indices 50168 -- 50667
ATTCTTTCTCTTTCTGCGCCATAATAATAGAGAGATAGAAAACACAACTATGAGAAGGATGCCAA
TAAAAAAGAAACCAAAATTGTCAGTCAAGAGGGGCTCCAGGGGGGAAGGGACAAATTTACCAAAG
TTCTTCACATACCAATCATGTACGGGCACACCGAGACCCATATTCTTAGCATAAACGTTATACCA
AGAGTTGTACTCTCTAATGAGTAGGAAGTCCAGTTTTCCCGCTAGTAAAGCGGGTGAAGTTTGGT
CCAATACCCCTTGGAGAGCTTTGATATAGGGGCCTTGTATGGTCCCTTGAAAAAAATCCTTCTGT
AGAACTAATAAAAATTTATTGAAATTACTGAGCTTCGAGATAATCAAAGGATCCTCAATATCACC
GGAGATCCAAACAGAGGGACTGAAGAAAAATGGCGAAGAATAGATCGAGGCTAGATCGATACCCG
GAGGAACCGGTATTCCCTGAAGAATAACTTCAGGCATCCCTGATC
Right flanking sequence: Indices 50863 -- 51362
TTGATTTTGCGCCTTCTAACATAACAGAGTAGATCATTCGCCTAACGCTTTTTCATTCACGATTT
TATGTTCGTCATTCTTTGTCGATTCTTCCCCTCTTTATTCTCTTTTTTTAGAACAAATGAATAGG
GTGATCCGGCCCCAGCTCCTTTTTTAGATTTATGAGGAGCCGATAATCATCCCCTACTTCGGGAC
TCGAACCCAATATTCTTCCGCGACCCCTCTACGAATAACAATACAACTTTTCTATTTTCTACAAG
ACAAGCTTCGCCGCTTTTCAAAAAACTATTTGCTTGCAACGCCTCTTACGGGGGCAGATTTCTCC
TAAAAGCAACCTTTCCTTTCATTCATTTAAGCGATTCAATCAGTAGGAAAGTCATATCACTGAAC
ACTTTATAGATATCTGTCTTCCTTATAAGCTGCATGCTATCGGAGAGAGAGCAATGGGAGGTTCA
GTCAAAACAAAAGCATTTACCACGCACTCAATGCAATGATCAAGC
Found at i:66648 original size:14 final size:14
Alignment explanation
Indices: 66629--66655 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66619 CCTTCTGTAA
66629 GTTCCCGGATAATC
1 GTTCCCGGATAATC
66643 GTTCCCGGATAAT
1 GTTCCCGGATAAT
66656 GCCTGCCGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (14 bp):
GTTCCCGGATAATC
Left flanking sequence: Indices 66129 -- 66628
AACTCGCCAGAGCTAGTTTTAGAGCTACCGATTCGCACCCGCCGGTCAAAGAATTCCCTTTCGAG
AAGACCGAGACGACTCCTTTCAGTCGTACCTTTTAAGGGGAGATCTTTTTTTGGTAGGGATGGGA
CTAAAGAGCTCTAACAGAAGAGCGGCAAGAGCTTCTCTGAAAAGACCTGTTCTCTTATCGCTTTG
AACATTCTCCTGGGTTCCTAGCCCAAAGAAAAAGACAAGGCTGAGTTGCCCCTTCTACCATCTGA
GGTGGAATACGGATCCTTCTTTGCTGAGTTTGTTCTATGGAATAGGCCCTCTCACTCTATCTCAT
GTCGGAGAAGATTATGTATGAATTTGAATACCCACGAACGTCTAAGAGGTCAGCTACTTAGTTGA
TTTGATTTAAGGTATCTCTTGATCGAAGGGTTCAAGCCGCTAAAGCGGAAAGATATATCTCTTCG
CCTGAAGCGTTGTGGATTTAGGCGTGTCACGCCAACCTTCTGTAA
Right flanking sequence: Indices 66656 -- 67155
GCCTGCCGCAGGGACTAACCCTATCTTCGCGCATACTTCCTTGTTTGTCTGGGAGTTGAATCAGA
AGCATCGAATGAAAGCTTCTTTACAGGACCTCTTCTATTTCCCTCCATTCTTCTTCCTAGTGACC
TAGGAGTTGGGTTCGTGACATTTTTTCTTTCTGCTATTCAAGTAGCCCGGTCTGGTAAGTAAGGA
CTTTGCTCTCAGTAGAAGTAAAAAAGCCTTCAACAAGACCATCCGCTATTGAATCAGCTGCTATA
GACTTAGCTAAAGAATGTCTTGCACGAGATTCAATGTTATGTGCTTGATTGCGATCACATTTTTC
TCGTAGTTGATGAGCTGCCAACCTCCGGAATTGAGGGTTGTAGGTAGAGTTTCCTGCGTTCAACT
TGGAGTTGGAAGAGTTGGATTTGGAGTTTATAAAAGCTGTTATTAGTTCCGACTCCCCGGTCTAG
GCCTGGTACTTGGTAGTTCTAAGGTATCAGTGTCGCTACTTTCTG
Found at i:100128 original size:30 final size:30
Alignment explanation
Indices: 100094--100209 Score: 187
Period size: 30 Copynumber: 3.9 Consensus size: 30
100084 TATCACAAGG
*** * *
100094 TACGAAGGAGCTGAGTTGCGTCAGTCAGGT
1 TACGAAGGAGCTGAGTTGCAAGACTCTGGT
100124 TACGAAGGAGCTGAGTTGCAAGACTCTGGT
1 TACGAAGGAGCTGAGTTGCAAGACTCTGGT
100154 TACGAAGGAGCTGAGTTGCAAGACTCTGGT
1 TACGAAGGAGCTGAGTTGCAAGACTCTGGT
100184 TACGAAGGAGCTGAGTTGCAAGACTC
1 TACGAAGGAGCTGAGTTGCAAGACTC
100210 AGGAAGCTAG
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.22
Consensus pattern (30 bp):
TACGAAGGAGCTGAGTTGCAAGACTCTGGT
Left flanking sequence: Indices 99594 -- 100093
CCAGCACTCTGACCAACCCCCAATAAAAGACTGAGACTTGCCCGACGGAAAGCGAAAAAGAACGG
ACTGACGTACAGTACGAGGAGAATTGATAGTGATCATCATAGAAAGAAGAGTAGATGAACCAAGC
TTAGGAAGAGAAGGCATCGCTTTAAAAGACTATGGGGAGAACAGCGGAGTTAACGAGCTAAGGAC
GGGTATTCCACTCAGGGTCGCCTAATGGGCTTCACCCAGCCCCATGGATTCTTTTTCAACTGCTG
ACACTGCCACTTCTTTGACATACACCAAGACAGGAAGTAGCTACATTCCTTACTCTCTTGAGTAA
GCAAGTAAACTACCTTCCAAAAAGCTTGAATAAGCTTGAGCGATTACATAACCTATCTATTGCCC
ATCTTAAGCGTTAAAAGCCCTTCTATGCCCTTTCCCGACTATTCTCGAGTTGTAGGAGAGCTTCC
TTGCCTAGCCTATGCTTCAAGACCAGTTTCAACCTTATCACAAGG
Right flanking sequence: Indices 100210 -- 100709
AGGAAGCTAGTCGAATGCGTGCTCTTCTATCCCTTTCGGTGGTTTTTCCTTCCTCTGAGGTTCGC
TAGGGCGTGGCATTCAGTTACAGTTAGTAAACGAAGGGATGGGGGAAGACATTCCATTCACAGAA
GAGAATCGGGTCTCATTCGGCCTCGTTGTAACAACTGAAAAGGGAAAGATTTGCTTTCCGTGCAC
CCTCGCGTGTGGTGGCAGGATCTCGCTTTTCTTCATTCAAGAATGATGTCAGTCAGACTAAAAGG
GGCTCTTCATCCAAGAATGAGCTAGGCTGGCCGGCGTCTTTCTTTTATGAAGATTGGCTTCCCTT
TAAGGTAGTTTAGACTCACTTACTCGTTAGAGTAAGGTAGTTTAGACTCACTTACTCGTTAGAGT
AAGGTAGTTTATACTCACTTACTCCTTAGAGTAAGGAGAATTCCATCTTTTTTTCGGGTTCAAAA
GCTTTGGACGACTGTGTCACTGCGGTCTGATTCACTCACCATGCT
Found at i:100576 original size:32 final size:32
Alignment explanation
Indices: 100535--100635 Score: 184
Period size: 32 Copynumber: 3.2 Consensus size: 32
100525 GGCTTCCCTT
100535 TAAGGTAGTTTAGACTCACTTACTCGTTAGAG
1 TAAGGTAGTTTAGACTCACTTACTCGTTAGAG
100567 TAAGGTAGTTTAGACTCACTTACTCGTTAGAG
1 TAAGGTAGTTTAGACTCACTTACTCGTTAGAG
* *
100599 TAAGGTAGTTTATACTCACTTACTCCTTAGAG
1 TAAGGTAGTTTAGACTCACTTACTCGTTAGAG
100631 TAAGG
1 TAAGG
100636 AGAATTCCAT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 67 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (32 bp):
TAAGGTAGTTTAGACTCACTTACTCGTTAGAG
Left flanking sequence: Indices 100035 -- 100534
GTAGGAGAGCTTCCTTGCCTAGCCTATGCTTCAAGACCAGTTTCAACCTTATCACAAGGTACGAA
GGAGCTGAGTTGCGTCAGTCAGGTTACGAAGGAGCTGAGTTGCAAGACTCTGGTTACGAAGGAGC
TGAGTTGCAAGACTCTGGTTACGAAGGAGCTGAGTTGCAAGACTCAGGAAGCTAGTCGAATGCGT
GCTCTTCTATCCCTTTCGGTGGTTTTTCCTTCCTCTGAGGTTCGCTAGGGCGTGGCATTCAGTTA
CAGTTAGTAAACGAAGGGATGGGGGAAGACATTCCATTCACAGAAGAGAATCGGGTCTCATTCGG
CCTCGTTGTAACAACTGAAAAGGGAAAGATTTGCTTTCCGTGCACCCTCGCGTGTGGTGGCAGGA
TCTCGCTTTTCTTCATTCAAGAATGATGTCAGTCAGACTAAAAGGGGCTCTTCATCCAAGAATGA
GCTAGGCTGGCCGGCGTCTTTCTTTTATGAAGATTGGCTTCCCTT
Right flanking sequence: Indices 100636 -- 101135
AGAATTCCATCTTTTTTTCGGGTTCAAAAGCTTTGGACGACTGTGTCACTGCGGTCTGATTCACT
CACCATGCTAAGCGAGTCGCCCTGAAGGCCTAGCCTAGTTTATGCTTTTTGGCTCCTTTCTGAGG
AAGATTTAGGCTATTTCTGTTATGCTTCCGAAGCCTAGACCCACCCTTCACCTTGGCTTGGCTAC
AGGTTCAAATCAATCCAAAATCTTCGCTTTAGCGATTACATACCTTTTTTTGATTCTGCTTTCTT
ATCGTCCTTTCTTCGAGCCTTTTGGTATGTATTGTCCCCTAACTATAGATCAGATCCACCGGACG
AGAAAGTCAATTCCGCACTGCTGCTGAGTCGTCGGACTTATCCAAAAAGGGATTTGGAGAATTTC
TTTAGATTGCGTTGAGGGAAATCTACCAAAGCTAGGCAGATAGATAGACTCCTTTCCCGCTGCTA
AGAGAGAGCAAGAAACAAAATCAAATGATTGTTTTTTAACCAGCG
Found at i:102720 original size:39 final size:39
Alignment explanation
Indices: 102666--102741 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
102656 TTTTCTATTC
*
102666 ACTCATGATCTGGCCTGGTCGACCCGATCATGATATTTG
1 ACTCATGATCTGGCCTGGTCGACCCAATCATGATATTTG
*
102705 ACTCATGATCTGGCCTGGTTGACCCAATCATGATATT
1 ACTCATGATCTGGCCTGGTCGACCCAATCATGATATT
102742 GAAGGATGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (39 bp):
ACTCATGATCTGGCCTGGTCGACCCAATCATGATATTTG
Left flanking sequence: Indices 102166 -- 102665
ACACCTGTGTAGAGTAGATCGTTCAACACTGCGGCACAAAGCTATTTTTTACCTATTGGTCCTAG
TATCATAGGCGACCGAACGGCCGCCCCCTATAATTACTAGACCAACCTGCTATAATAATTCCATA
AACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCATAC
CATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAGCATAAATGTAGTGACTGGAGCCATT
CTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACCATC
TGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAG
CCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATTCCA
AGTATTTCAGCTGGAACAGCTATGTACGTTTTCGATTTTCTATTC
Right flanking sequence: Indices 102742 -- 103241
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCTCGATAAAAGTGGAAGATGGTGCAAGATTG
AATCTCTTCAATCGAAGCTTCCGGCTTGATTCCTTTTCGCGAGTTTTCGCTAGGAATCATCATGT
CGATTGCTTTCGTTGGAGAAATCAGTGGCGTGGTTACCGGAGGTAACCTCGGCTTTCAAAAATGA
GTTTTGGATTCGTGGGATGGAAAGGATTTTTAATTTGAGTTCTTCACACTTTTCCCTTTCTTTTA
ATCGAAATTCTTCGCTACTTCGTGCCTCTACTTCAATGAAAGCTAGCTCCTACTCCTTCTCCTCC
TGAATCCTCGTTGGTCTTTCGTTCGTAGTGCGAATTCTATAGTGAGAAAGCTCACCCCTGCCTTT
AGACGAGAAAGCCCTCTTTTACATCCTCTAGACAAATCAATATAAAATGCTACAACCCATTGTTG
TTCTTTTGACGATGAAGCACTCCAGTACAACAGGCTAAAGTAACC
Found at i:108388 original size:22 final size:22
Alignment explanation
Indices: 108360--108401 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
108350 TGCTTTCCCC
108360 CAAAAATGAAGAAAGACTTGCT
1 CAAAAATGAAGAAAGACTTGCT
108382 CAAAAATGAAGAAAGACTTG
1 CAAAAATGAAGAAAGACTTG
108402 TCGGAAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (22 bp):
CAAAAATGAAGAAAGACTTGCT
Left flanking sequence: Indices 107860 -- 108359
CGCTGGAACATTTTCAGCGTCGCTTACTGCATCCCCCCCCTCTGGAGAGTCGTTTAGATACCCCC
TCCACTCCCCATTCCCATTACTGGCATCGGATCCAGAGGGCATCATGTAAGTACAAGACATTCCC
CCAGTTCCGCCAGTACTGGGTGCTCCCATTCCAAATAAGGAGTAAACCCCCACAAAGCATACCCC
GAAGTAAGTATGCCAGTGGGCCCGAACATAAGAAATAATCATAACAGCAACGATAAAAAGTCCCA
TATACACAATCAAATAAAAGAATTGATGCCTTCTTAAGTAATGGGAGTAAAGCTTGAATAAAAAA
GACAGAATCAAAAATACTAAAATAAAAAAAAGAAAATTCTTGTTAGATAAAAAAAAAGTGTCACC
GAAGCGGAAAAAGCATCCTGAAAATAAAATCAAAAGAGAAATTAGAAAATTTCGAGAAAATGGTG
CTCGTTGAGGCATAATAGCAATTCTTATTTTGCTCTGCTTTCCCC
Right flanking sequence: Indices 108402 -- 108901
TCGGAAATCACCGGTTGGGTTTTCCAACCAGGAAAGGCATGGGATGCACTATTTCGAACTATGTC
TCTCGGAGAAGCGCTCTTTCGGCTACCTTCTCCTCGAGGTCTAGTTTGAGTCCGGGTGCGGAACT
CAGTTAGAAAGGAGAGAATTCATCTCCTTATATACGAAATTCTCTCTTTATTTATGAGAATTTGG
GTGACGCTACGAAGGCAAGGCTTTCTTTCCTGTCTGGTCAGTGAGCCCCCTTCTTTTAGAGGATC
GGAGTTGAAAACAGCTTTACGTTAGGAAAGAGACCCTCGAGCCCGTAAGGCCATGGATTAGTTGT
TAGGGGAACCGGCGCCCTTTACTTGAATGCCGATTTGGATTTGACTAGAGAGGGGCATCTTTTCA
CGTACAGAAAGACAGGCCTTTTTCATGGTTAGTTCTCGCTTTTTTTCTTTCATTTCCTTCTTTAT
TAAAGCGCTAGGTTACATCGATCTCGATCAGAAAGGGCCCATGAA
Found at i:125292 original size:32 final size:32
Alignment explanation
Indices: 125240--125644 Score: 801
Period size: 32 Copynumber: 12.6 Consensus size: 32
125230 TTCCTATTTG
125240 CTTACTTGGATACAAGTATGGTAATGCAATTCA
1 CTTACTTGGA-ACAAGTATGGTAATGCAATTCA
125273 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125305 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125337 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125369 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125401 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125433 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125465 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125497 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125529 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125561 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125593 CTTACTTGGAACAAGTATGGTAATGCAATTCA
1 CTTACTTGGAACAAGTATGGTAATGCAATTCA
125625 CTTACTTGGAACAAGTATGG
1 CTTACTTGGAACAAGTATGG
125645 AGCGGAGCGT
Statistics
Matches: 372, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
32 362 0.97
33 10 0.03
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (32 bp):
CTTACTTGGAACAAGTATGGTAATGCAATTCA
Left flanking sequence: Indices 124740 -- 125239
GTAGGACAGACTCACTTTTTTACGAAATAACGAGGCAGATTCGATCCAGCCAAAAGTTTCCCTTC
GGCTACCTTGTTCCATCAATGACCCTCGGTCAACTCACTCTCTCCCGTCTAGTGACTCAATGAAG
GAATTCATGGATGACCCATTTTCTTGGAAAAAGTCCGGAAATAAGAAAGAGATTATTCCCTAAGA
GCTTGTCCAGTACCATCTATACCTAAAATGAAAAATCAGTTCTTATTCTTAGGCGGGGGCAGGAA
TCGAACCTGCAATTTTCAGGGCATGAACCTGATGAGTTATTCCAATTACTCTACCCCGCTTCTTC
TCTCTCTTTCACTATTCTCACCTGGGTCCCCGGCTTTGGTTGCTTGGCCGGGGTAGAAGTGGTAG
TAATTGCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTGACCGCAATTGCAGG
TAATGCCAATTCACTTAGAAGATAGAGTATGGTAATTCCTATTTG
Right flanking sequence: Indices 125645 -- 126144
AGCGGAGCGTTGACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTAGTTTCGTTTAGTACGAGA
TCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTCCG
AGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGG
CGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGG
TTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTT
CTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCC
CAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCAT
CAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCC
Found at i:127012 original size:18 final size:18
Alignment explanation
Indices: 126989--127031 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
126979 CGCCCTTGTT
126989 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
127007 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
127025 GACTATG
1 GACTATG
127032 GTAGGTTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 126489 -- 126988
CGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGAC
AGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTT
AGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTCCATTCAAAGCTTATAACACTTTTCCT
TCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCT
GTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAG
CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGC
CCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGC
CCTCCCAATTCGAAGTTTTTTCCTGGAAGCCTAAACGCCCTTGTT
Right flanking sequence: Indices 127032 -- 127531
GTAGGTTCTGCTTGCTGAAACCTCTACTCTAATCAAAAGACTAAAGGCCCCTTGAGCTGACATCA
GCTCAAGCTCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTAAGGCGAAGGAACTCGACTACT
TGCTTACTTGAATGAGTAAGGTAATGCCAATTCACTTACTTGAACAAGTAAGGATGAACGACACA
TTCTAAAACTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGACGCGGAG
CCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTGATCAGTCTTCGCCTTTAGATAACAA
AAAGTGTCCGCCCCTTAGCCTTTAAGGGCTAAGATCTTCAAACCTTAGATCGCCAAACTACGACG
AGAGTTTCGCCTTACTCTAACAAGTAAGCAAGTAGAAACTACCTTTTGAAGCGCCAGTCGCGTAG
GGCGACCGGGCCAGGCCAAGTCAGAAAGGCTTTGATGACTCAAGG
Found at i:130006 original size:42 final size:42
Alignment explanation
Indices: 129947--130030 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
129937 ATCCTACTAT
129947 GATCTACACAAAGAGGTAAGAGGGTAGGAATGCATTGACAGC
1 GATCTACACAAAGAGGTAAGAGGGTAGGAATGCATTGACAGC
129989 GATCTACACAAAGAGGTAAGAGGGTAGGAATGCATTGACAGC
1 GATCTACACAAAGAGGTAAGAGGGTAGGAATGCATTGACAGC
130031 TCTTTTTTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.14, G:0.31, T:0.17
Consensus pattern (42 bp):
GATCTACACAAAGAGGTAAGAGGGTAGGAATGCATTGACAGC
Left flanking sequence: Indices 129447 -- 129946
AAAAACGAAAAACGCTTTTCGCTCCTCTCACATTCGTTCGAGCTCTTTCAGATCCTCGAGACAGA
CGCAAGAAATGGGAGAAATGAAAACGAAAAGGTATCCGATTTTCGAGAGGACATTATACTGGGGT
GGGGAGGGTCTCTCTCTATGAAAGTAATTAGTGAAAACGTTCTTTCTTACTTACGATATTATCTA
TTGAAACCCGTGAATCCTCCCTTTTTAAGAGTCAGGAGTGAGCTGGAGCGCAGCCATCTTATCCA
CTGAACTAGCTAGAAGCAAAAGCAGCAATTTATAGAAAGTTGAAACAAGCTTTAAGACTGCTTTA
CCTTTCTATGAGAGATCGTAAGATCCGCTGACAAAACAGCGGGAACTACCTTTTTACCAGCCAAC
TCTTGCTTGTACGGGGGAAATGAAAGTCCTTCGGATGCTTGAAGGTATACCAAAGAACAAGTGAG
GATGCTTGAAGGTATACCAAAGAACACTCTTCTTTATCCTACTAT
Right flanking sequence: Indices 130031 -- 130530
TCTTTTTTGGAAATAGAATAGGATACGTACGTAATTAACTGAGAGAAAGATTGGAAGTGCTACTA
AAAGCAAATTCCTTAGAAGAAGCAAATTCCTTGCTTCGAATGAGCCAACAAATAAAGGAAAGAAG
GCAAGTCGCCCCGGACTAAAGGCTATGGAGATAGATGGTTCCATACCCGGTAAACTCTTCCCTCG
CTCTACTCAAAAAAGAAGCCTAGAAGGCCATTCTCCGATATGGAATTAGAAGGTAAGTCAAGTGC
TAAAGAAAGTGAAGCTCATTCTCCTAGAAGCCAATTCTCCTCTACGGATTGAACTGCTTTGGTAA
TGGACCAATGGTTTGCTTACACGACTTCCAAGATTGACAAGAATAGAAAGACTGGACGAAGAGAG
ACTGCTTGAAGTGCTGATAGAAAAAAGCATTTTTAGGCGAAGAATAAGATAAAGGCTAGGGGACC
ACTTTTCATACTTCCTTACGAAATTGGAGAGGATTAGACCACTAC
Found at i:190279 original size:18 final size:19
Alignment explanation
Indices: 190256--190298 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
190246 TAGCACTATA
*
190256 GGGAATATAGAAAG-ATAT
1 GGGAATATAGAAAGCAGAT
*
190274 GGGAAT-TAGGAAGCAGAT
1 GGGAATATAGAAAGCAGAT
190292 GGGAATA
1 GGGAATA
190299 CCATAAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.44, C:0.02, G:0.35, T:0.19
Consensus pattern (19 bp):
GGGAATATAGAAAGCAGAT
Left flanking sequence: Indices 189756 -- 190255
AGTGAACGGCACTCCGGTCAGGAGGCGGGGCCCTAAAGGGTGAAGAGCGACAGAAGGTCTATCCT
GTAGACTGCTTTCTTAGTTCTCAAAGCTGCTTTCTCTTTCTGGCTGCTATATGTCTAAACAGGAG
AGGGTTTATGAACCTTACAGAGACACTGCACTAGATGCGCATGAGGGAATGAATTGAGACTACCA
CACACGAATCCCATACCTCATGATGTAGTTGCTTATCCTTGGTAGGACGTATTGCGATAGAGCTT
TCTCTAGTAGCAGTAGAGAAACTGCACTGTGGAAGTTCAACGGAGAGAATTTGTTGATCTTAATG
ATGAGAGTATGAAAGTTAGATCGGGTCTATGCCTCAGCATATTCTCATCGGGTTAGTCTAAAAAA
GAGGAGTTGAAAAGCTCTAGTCTTTACGCCCTTCGTTCAAAATTCCGGTTAAAAGACTTAAGAGC
AAAGTTCGAAAGAAAGAAGGAGAGAGGTAATGGTATAGCACTATA
Right flanking sequence: Indices 190299 -- 190798
CCATAAGAGAGATCAACTAGAGCTTATGCCAAGGATGACTTTCCAAAGACTAAAAGTCTATTACT
CATTTTGTTTTGAAAAGGATATCCCTAAGAGGATTGCTAGTTAGCCACCTTCCATATACAACCGG
TGGAATAACCAGCTTCAGGAATTGACTCTGCTACTCTTTCATCCAAGCCCAGTTCAAGCTCTCAG
ATATAGGCCTCGTCTTGGTCGACTATCACCAAACAGGTCAGAATTTCCGGTGTTAAGCATGTAGC
TAGACTTTCTTTTTTCAAGAGATTCTGTAAGCAAAGAAGGGAATCCCTAGTCAAGGAAGTAAGCT
AAGAAGGTAATTGCTTTGAAATGCCTAGTTCTTAGCTCTTAGCGAGAATAGGTTCGTAGCCAAGG
TAGGGCCGAATCCACTTAAGTAAAGCTTCCCAGCAGTCAACCCAGCATTGAGTGAAGTTCCTTCC
TTCCCTCAGCCCTTTCCATTCTTCTTTCCATGTAAGGTAATTCCT
Found at i:192405 original size:42 final size:42
Alignment explanation
Indices: 192353--192434 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
192343 GTCACCGGGG
*
192353 AAGACTGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
1 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
192395 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGA
1 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGA
192435 CTCAAAACTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.21, G:0.30, T:0.11
Consensus pattern (42 bp):
AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
Left flanking sequence: Indices 191853 -- 192352
ACTTGTCGTCTAGTTTCAGGAAATGTTCGGAATAAAGAACTTACACTATCGCAACGCATCGCTCT
CCGAAAATGGAGAATGAAGAAAAAATCTATTAAGAAAAAGATGTATCCGAGAAAAAATCGTAACA
GTTACATACAATTACGAACTACACGAAAGTTGTCCCTTTTTCATGGGAATTTACCCATCACAAAG
ATGCACAGAAGAACAAAACGAACTTCATATATCCCTTTTCTACTCAATCCAGAAACAAGATTGGA
CGTTATTCTGGTTCGTCTACATTTTTGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATC
GAAAAGTGTGTGTGAATAATGGAATAGTAAACATTAGTCATTTTAAAGTTTCCCACGGTGATATA
ATATCTTTTCAAGAAAATTACGCGAGAACCCGCGGTGAAGAAATAAGGAAATTTTTCTATATCAA
AATATCAGTTGAAAAAATCATAGGCAAATTAAGGGGTCACCGGGG
Right flanking sequence: Indices 192435 -- 192934
CTCAAAACTAAGAAGGGATGCCGCCTACTACTAAAAGACCGGTTTTTGCAAAAGTTACATTCTTC
TATGCAAGAACAAGACTTAGAAAGAACAAAGAAGTTTGGATCCGACGCTGAGCACAACAGAATGA
AGAGGAATTTTTATCACTCCGTGACCTTATTCTTATCGAAGAAGAGAAGAATCAAAAGGATAGAA
CTACCTACTCATTATTCGGAGGTCAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAA
CATAGATCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAAGG
GACGTGGCCAAAACACATAAAGATCGGCGTAGTCGCTCATAGGGACATATCTATCCGGATAGAGA
TAAGGACAGGGATCCATCTAGAAAAAATATTGAACCGGTTTCATTTTTTTTTTTCTTGATTCTGA
TTGATTGCCTTTTTTTGACGACAAGTTTTAAATCTTAATGCAGGC
Found at i:211234 original size:42 final size:42
Alignment explanation
Indices: 211175--211258 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
211165 CCAAAAAAGA
211175 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
211217 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
211259 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 210675 -- 211174
TAGTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTA
TTCTTCGCCTAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCT
ATTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCG
TAGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAAT
TCCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGT
ATGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 211259 -- 211758
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:214214 original size:18 final size:18
Alignment explanation
Indices: 214174--214216 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
214164 CAGAACCTAC
214174 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
214193 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
214210 CATAGTC
1 CATAGTC
214217 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 213674 -- 214173
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGCGTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 214217 -- 214716
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:215598 original size:32 final size:32
Alignment explanation
Indices: 215561--215965 Score: 801
Period size: 32 Copynumber: 12.6 Consensus size: 32
215551 ACGCTCCGCT
215561 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215593 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215625 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215657 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215689 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215721 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215753 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215785 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215817 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215849 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215881 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215913 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
215945 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
215966 CAAATAGGAA
Statistics
Matches: 372, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
32 362 0.97
33 10 0.03
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 215061 -- 215560
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 215966 -- 216465
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAATGAACAGACAAATCAAAAATTTCACTTTGAATTTCGGACCTCA
ACATCCTGCTGCTCATGGTGTTTCACGATTAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTG
CAGAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGTGAC
Found at i:273352 original size:54 final size:54
Alignment explanation
Indices: 273289--273404 Score: 189
Period size: 54 Copynumber: 2.1 Consensus size: 54
273279 GGTCGGAGCA
273289 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGG-AGACGGATGCTGCTGCT
1 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCA-ACGGATGCTGCTGCT
* * *
273343 TCCGGGGATGCGCCTTTCGACTTGAATAATCCACCGGCACCGGATGCTGCTGCT
1 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCAACGGATGCTGCTGCT
273397 TCCGGGGA
1 TCCGGGGA
273405 AAGAAATCTC
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.22
Consensus pattern (54 bp):
TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCAACGGATGCTGCTGCT
Left flanking sequence: Indices 272789 -- 273288
ACAAAGCAAAGATGGAATCGGGATAAAGGGGGGAACAAAGTCAAGTATAAGCAAGCATATCATAT
ATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGATCTGAATCGTAGTTCAGATTCAAGTTG
GTTTAATGATTATTATTATGGTAAATTAGTATATCAAGATCTCAATCTGAGATCTTATGTTGGTT
CAATACGTCCACCTACGAGACTTACCTTTGGCTCTCGGCCCGGTAGGTGTATTATTATACATTGT
CAAAAACGAACGTTCATTAATTTCTTTCTTAAATTTTTTTTTATCCTATTAATTTCTTGTTTAGT
TCTTGCTGTTGTCTCTTGCCTGAGTTTACTTCTTGGATTTGGATGGAGTTTTTCATTTATTCTTT
CTAAAATCGCCTTCATGATACTAGGCTCGGGGCTCCATGTAGTATTTAGGCGCTTGGGATGGGCT
TTCCCTGCCTTGCTTACATCGTGCTCCATGTATATGGTCGGAGCA
Right flanking sequence: Indices 273405 -- 273904
AAGAAATCTCCCGTGGAGGACCTGGTCCGCCAGCCAGATCAAGTTCGAAAGGGCGGGGGAGCTGA
CCAAAAAGGCGGAGGAGCTGACCCAAAAGGCGGAGGAGCTGACCCAAAGGCACAAATCCTCCAAA
ACTACAGCTCCCGGAAGCAGCGGGAGAAAGGGAATCGCCTTTCTCGGTTATGTATTTTAGCCGAA
AAGCGCTTTAAATTGATCAAACGAAAAAACGAGAAATTAAAGAGGCTTATAATAGACAACCTTTT
TAAGTAATTGTTTTTTCGTTTTTAGTTCCTTGATCCATTCCGTGGCGCGAAATCCGTCATTGGCG
AAACAATTATTTGGTTATGCTATTTTGGGCTTTGCTCTAACCGAAGCTATCGCATTGTTTGCCCT
AATGATGGCCTTTTTGATTTCATTCGTATTCCGATTCCGGCTTTCTTTTTTTCATTTTTGTTTTA
AAAAGAGAGGGGCCAAAGTAAGACAGTGAAAGAGTGTAACTTCCG
Found at i:273514 original size:21 final size:21
Alignment explanation
Indices: 273456--273517 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
273446 AGTTCGAAAG
* *
273456 GGCGGGGGAGCTGACCAAAAA
1 GGCGGAGGAGCTGACCCAAAA
273477 GGCGGAGGAGCTGACCCAAAA
1 GGCGGAGGAGCTGACCCAAAA
273498 GGCGGAGGAGCTGACCCAAA
1 GGCGGAGGAGCTGACCCAAA
273518 GGCACAAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.32, C:0.23, G:0.40, T:0.05
Consensus pattern (21 bp):
GGCGGAGGAGCTGACCCAAAA
Left flanking sequence: Indices 272956 -- 273455
GATCTCAATCTGAGATCTTATGTTGGTTCAATACGTCCACCTACGAGACTTACCTTTGGCTCTCG
GCCCGGTAGGTGTATTATTATACATTGTCAAAAACGAACGTTCATTAATTTCTTTCTTAAATTTT
TTTTTATCCTATTAATTTCTTGTTTAGTTCTTGCTGTTGTCTCTTGCCTGAGTTTACTTCTTGGA
TTTGGATGGAGTTTTTCATTTATTCTTTCTAAAATCGCCTTCATGATACTAGGCTCGGGGCTCCA
TGTAGTATTTAGGCGCTTGGGATGGGCTTTCCCTGCCTTGCTTACATCGTGCTCCATGTATATGG
TCGGAGCATCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGAGACGGATGCTGCTGCTTCC
GGGGATGCGCCTTTCGACTTGAATAATCCACCGGCACCGGATGCTGCTGCTTCCGGGGAAAGAAA
TCTCCCGTGGAGGACCTGGTCCGCCAGCCAGATCAAGTTCGAAAG
Right flanking sequence: Indices 273518 -- 274017
GGCACAAATCCTCCAAAACTACAGCTCCCGGAAGCAGCGGGAGAAAGGGAATCGCCTTTCTCGGT
TATGTATTTTAGCCGAAAAGCGCTTTAAATTGATCAAACGAAAAAACGAGAAATTAAAGAGGCTT
ATAATAGACAACCTTTTTAAGTAATTGTTTTTTCGTTTTTAGTTCCTTGATCCATTCCGTGGCGC
GAAATCCGTCATTGGCGAAACAATTATTTGGTTATGCTATTTTGGGCTTTGCTCTAACCGAAGCT
ATCGCATTGTTTGCCCTAATGATGGCCTTTTTGATTTCATTCGTATTCCGATTCCGGCTTTCTTT
TTTTCATTTTTGTTTTAAAAAGAGAGGGGCCAAAGTAAGACAGTGAAAGAGTGTAACTTCCGCTT
TCGCGTACTGAGAGGCAGGCCCTTGTATCATGGTTAGTTTTTTGCTTGCTTCAATGGTAAGGGGA
AGGGGAGAGGTGAGGAGGGCCCCCTTCAAGCGGACTACTTTACTA
Found at i:325035 original size:24 final size:24
Alignment explanation
Indices: 325007--325113 Score: 91
Period size: 21 Copynumber: 4.7 Consensus size: 24
324997 ACAAAAAAGA
325007 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
**
325031 TTTGTCTAAGTTGCTTCGTTTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
* * *
325055 TTTGTCCAAGT---TGCGTCTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
* **
325076 TTTGTCCAAGTTGCTTC---TCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
*
325097 TTTGTCTAACTCACTTC
1 TTTGTCTAAGTCACTTC
325114 CTTTTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
21 36 0.51
24 34 0.49
ACGTcount: A:0.11, C:0.22, G:0.14, T:0.52
Consensus pattern (24 bp):
TTTGTCTAAGTCACTTCGTTTCTT
Left flanking sequence: Indices 324507 -- 325006
GTTTCGGCTTTAGATTCGAGAGTTGGGATTGAGCTTTCTTTTCAGTAAAGCCTCGCATTACTAAC
GCTTAGAGAGCGCTCCCCCTCTCTGACTGGTAATACACTCGGAATAAATCAGGTGAGGCGAGTTG
GAGCCCTAGTGGGGCTTCTCTTCATTCCCCAATGTAGGATGGATCGCAGCTTCGAATATGGAATT
CAAAGGGATCAAATAGGAAACGATACTTTGAATCATAGAACTATAAGGAAATATACGATCAACCA
ACATTTCTCGAATTTTAAAAAGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAA
CCGAGAGATTCATGAATCGGGATCCTGATGCATATAGATACAAATGGTTCAATGGGAGCAAGAAT
TTCCAGGAACATTTCGTTTCTGAGCAGAAGAGTCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 325114 -- 325613
CTTTTTTCTTTGTGAGTTTCGGGAATATCCCCAGTAATAGGTCCGAGATCCGCATTTATGAATTG
AAAGGTCCGAATGATCAACTCTACAATCCGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTT
GAAAAAATGGAAAGCCTTCTTATTGGATGATCATGATACTTTCCAAAAATCGAAATTCTTGATCA
ATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCAT
ACTAGAAATAATCACGGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGA
TCAAAACAATTGGCTGAATCCCGTAAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATA
AAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTC
CCTTTTTATATGGAAAAGGCCCGTATCAATAATTATGATTTTACG
Found at i:325077 original size:21 final size:21
Alignment explanation
Indices: 325027--325102 Score: 98
Period size: 21 Copynumber: 3.5 Consensus size: 21
325017 TCACTTCGTT
* *
325027 TCTTTTTGTCTAAGTTGCTTCGTT
1 TCTTTTTGTCCAAGTTG---CGTC
325051 TCTTTTTGTCCAAGTTGCGTC
1 TCTTTTTGTCCAAGTTGCGTC
*
325072 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTGCGTC
325093 TCTTTTTGTC
1 TCTTTTTGTC
325103 TAACTCACTT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
21 33 0.67
24 16 0.33
ACGTcount: A:0.08, C:0.21, G:0.16, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTGCGTC
Left flanking sequence: Indices 324527 -- 325026
AGTTGGGATTGAGCTTTCTTTTCAGTAAAGCCTCGCATTACTAACGCTTAGAGAGCGCTCCCCCT
CTCTGACTGGTAATACACTCGGAATAAATCAGGTGAGGCGAGTTGGAGCCCTAGTGGGGCTTCTC
TTCATTCCCCAATGTAGGATGGATCGCAGCTTCGAATATGGAATTCAAAGGGATCAAATAGGAAA
CGATACTTTGAATCATAGAACTATAAGGAAATATACGATCAACCAACATTTCTCGAATTTTAAAA
AGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAACCGAGAGATTCATGAATCGG
GATCCTGATGCATATAGATACAAATGGTTCAATGGGAGCAAGAATTTCCAGGAACATTTCGTTTC
TGAGCAGAAGAGTCGTTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATT
GGTCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTCGTT
Right flanking sequence: Indices 325103 -- 325602
TAACTCACTTCCTTTTTTCTTTGTGAGTTTCGGGAATATCCCCAGTAATAGGTCCGAGATCCGCA
TTTATGAATTGAAAGGTCCGAATGATCAACTCTACAATCCGTTGTTAGAATCAATAGGTCTTCAA
ATCGTTCATTTGAAAAAATGGAAAGCCTTCTTATTGGATGATCATGATACTTTCCAAAAATCGAA
ATTCTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTG
ACTCATTCCATACTAGAAATAATCACGGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATG
ATATCCCACGATCAAAACAATTGGCTGAATCCCGTAAAACCATTTCATAGAAGTTCATTGATATC
TTCTTTTTATAAAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTA
ACAAAAGATTCCCTTTTTATATGGAAAAGGCCCGTATCAATAATT
Found at i:329980 original size:33 final size:33
Alignment explanation
Indices: 329938--330057 Score: 231
Period size: 33 Copynumber: 3.6 Consensus size: 33
329928 GAGACGTTCC
329938 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
329971 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
330004 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
*
330037 CCTCTCCCTTTGGTCGAGCAA
1 CCTCTCCCGTTGGTCGAGCAA
330058 GTAAACTCCC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 86 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (33 bp):
CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
Left flanking sequence: Indices 329438 -- 329937
CTACACCTCGTTTCACCCTCCGAAGCATATAGATCTACCCGATCGATCAAGACTCGAACCGAACT
CGCTCATCCTTTTTGGACCCTTCGCCCGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTT
CAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGTCTGTTTTCTTCATCGA
ATAGCGCCCTACACTTTCTTCTTAAGTCAGAATAAAGAGAAAATGGAAGTTTCAGTTAAGGGCCC
TTTTCGCTTTTTAAGCTTTCTTCTCTTATGATTTTTAATAAGAAGAAGAATTTTAGATAAGGAAA
TGACTGTAAGAAGAATCTTATTTCTAATTGAATTACAGTAATATTAATCTATGAAAGAGCTTGCT
CGCAGCTTATGGTTGGCCTTTCCTTCTCTTATGATTTAAAAGCAGAGTCAAAGGGAATAAAGAGA
ATGATAATGAAATGACTGTAAGAATCTTCATTAAAGAGACGTTCC
Right flanking sequence: Indices 330058 -- 330557
GTAAACTCCCTTGAACCTAGCCCTCGGGGATCGGCTCTTTCTCTTCGAATTCTTTTCTAATTCAA
TTACTGTAAGTTTATTCAATTCAATAAGCTCTTTTTAAGCCTCCGGTCTCGCAATTAAATAAGAC
CTTTGGCTTCTCTTTTGCTTGCTTTTCTTCTTCTTTTTCTCTTTTCATAAATGTGCGCATATATA
GGCCTATATCCCCTTTCTTTAAGAAAGGTTTCCAAACCTATTCACTCCCTACACCTTTTAACTAA
AGAACTCGTTAGCATGTGAGAGGGATGCAATTGCTTATGCGGCTGCATCTCTTAGCTCAAAGTGT
GCGTCAACCCCTTCTGGCAGTGGCATAAAGTGCCAGCCTCCGCTTCCTCAGCTTGCTAAAAGACA
GCTTCCGCGGAAGATTCGTTCCTTAAGAACATGCATAGCATTGATTTGAAACAAAGTGCAGTTAA
AGGCTATTAAATATGGCTTAAAGCTTAGTTAATAAGAAAAAGATC
Found at i:335637 original size:12 final size:12
Alignment explanation
Indices: 335620--335645 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
335610 AGAACAACTC
335620 CTGTACAGCCTT
1 CTGTACAGCCTT
335632 CTGTACAGCCTT
1 CTGTACAGCCTT
335644 CT
1 CT
335646 CCTTATGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (12 bp):
CTGTACAGCCTT
Left flanking sequence: Indices 335120 -- 335619
ATCGAACTAAGATGGATCGGGCTGTTGGCTCAGAGAAGGTTTGCTCGGGGAAGGAATAACAAGAA
GTTTATAAGGTAATGCCAATTCACTGACTTGGAACAAGTAAGGAAAAAACAGGCTCTTTCTAAGG
AGGTGGTTATAGAAAGAGATCAGAGTAGAGGTAGTAAAGCTAAGAGCTAGAAAGTAGCAACCCGT
AAAAGCTAGCCAAAAGGCATATGAGGGAGGGGGTTTGCTCGGCTCCGCTCGGAGAGGGAATCCAT
TCCAAAACCAAGGTTGGAGGTTAGGCCTAGAGCAACAAAGCAGATGGTTCGACAACTGATGATGA
GACAACGGACGACCGACCACTTATTGTGATGTATCCCTCCCCTTTGGTATGTCCTCTTCTGTAAA
GGTCAGCGCATGTTTGGTCGTAATCTGTTCGACCAGACCACGTCTTGCAGCTCTTCTGGCGTCAG
GGTTGCGGGAACCTGTGCTTCTTGGTTGAAATTGAAGAACAACTC
Right flanking sequence: Indices 335646 -- 336145
CCTTATGCTTTGGAGACGTTCTCAGCAACTCCAAGATAGATATGTGGGCTGCTAACTTACTGAGA
TGACCGAGAAGATCATACTCCGGCTGTGTGGCTACCTTTTCCGCTTGATCGGCAACCCTTTCTTC
TGGATTCTTGGGTCAGGTCGTGCATAGATCCTTCCCGTCTTGCTGACAGGATTGATTTCGTGACC
AGCTTTTGGCGATTACAGGTGCAATCGTAGCTTCCTTCGGTTCTGGAGGTTGCTTTCTCACGGCA
AACCTCTCGACCTTACTCTCTTGAGTAAGCAAGTCAACTACCTTTAGAGATGGGAGACGACTAAC
TAAGCTAATCATTATGTCCCTTTCTTCTTATTCCTCCCCAACCCTCGGATTGCTTCTCTCACTTT
AAAGACGTTAGCAAGAAGAGCTCTGATTCAACATAGAGCCTGGTCTATTGCTTTTCGTCTGGTAT
GAATGAATTCCTAAGGTTAGTCGATTTCTTCACATTCTTAATAGC
Found at i:347207 original size:42 final size:42
Alignment explanation
Indices: 347148--347231 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
347138 CCAAAAAAGA
347148 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
347190 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
347232 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 346648 -- 347147
TAGTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTA
TTCTTCGCCTAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCT
ATTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCG
TAGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAAT
TCCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGT
ATGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 347232 -- 347731
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:350187 original size:18 final size:18
Alignment explanation
Indices: 350147--350189 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
350137 CAGAACCTAC
350147 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
350166 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
350183 CATAGTC
1 CATAGTC
350190 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 349647 -- 350146
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGCGTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 350190 -- 350689
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:351571 original size:32 final size:32
Alignment explanation
Indices: 351534--351938 Score: 801
Period size: 32 Copynumber: 12.6 Consensus size: 32
351524 ACGCTCCGCT
351534 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351566 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351598 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351630 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351662 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351694 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351726 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351758 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351790 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351822 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351854 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351886 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
351918 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
351939 CAAATAGGAA
Statistics
Matches: 372, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
32 362 0.97
33 10 0.03
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 351034 -- 351533
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 351939 -- 352438
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAAGAAAATGGGTCATCCATGAATTCCTTCATTGAGTCACTAGACG
GGAGAGAGTGAGTTGACCGAGGGTCATTGATGGAACAAGGTAGCCGAAGGGAAACTTTTGGCTGG
ATCGAATCTGCCTCGTTATTTCGTAAAAAAGTGAGTCTGTCCTAC
Found at i:361673 original size:16 final size:17
Alignment explanation
Indices: 361641--361673 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
361631 AAGAGAGGGT
*
361641 GAAATAAATGCATTCTG
1 GAAATAAATGAATTCTG
361658 GAAATAAA-GAATTCTG
1 GAAATAAATGAATTCTG
361674 CTTCCCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (17 bp):
GAAATAAATGAATTCTG
Left flanking sequence: Indices 361141 -- 361640
CAGTATTGTTTGCATCATTAAATGAAGTATATTATACCTATGGGCTGCCAACAGAGGCAATTAGC
CTCTTTGTTGATGACTAGGATAGAGAAATCTATAGTTATAGATCCTCATCCTGGATTAATTGTCT
GTTCACATACCTATCGTGAACCTTTCCCTTCTTTTTCTTCCATTGACTTTCTCATAACTTGTGTT
ATGGACCTTCTTTTAGAGTATGCTTATCCACGCTTGGGAAAAGATTCATACGCTAAATTCATAAT
CATTGTGAGTATGAAGGTCTCAGATAAAGATGATATTGGATTTTCTCTTGGAAGTGCAATCGTTT
TGACTCTGGAAGATGGGAGTCTCATTCCTAAGGGCAATGTATATTCAAGCATTCAGAGTTTGGTA
CTCTCCCATGCTGATAAGTATGAAAACTTCAGAGTGACTGCTGTCACCCTCAAAATCTTTATTGA
GGGGAAAGTCTAAAATGTGTCCTCTCTCTCATTAGAAGAGAGGGT
Right flanking sequence: Indices 361674 -- 362173
CTTCCCTCTTTTCTTTAAAGATGTCGAGCATATAAATCCTCGCCCTGTAGGGCTACGAAATCGAT
CGTATCCAACACGTATCACTTCTCTAAAAAACAGTGCGAAAGGTATGACTCCGTTCTTGGTTGCT
GATACAGAGACAATCCTCTACGATGGGATGGATTTAGATCCTATTTCTCGGGATAAGTTTTTCAT
GGGATTAGATCCAACTCCCTTTGACAAAGATAAAAAAGTAGAAGTTCATTCACCTTTTGCTATAG
GCGTTATGATTGTTCGTCCGTATGTGCCTGTAAATGAGAGTAATATCGATTACTACTACAGTTCT
GATTATCCTGATAAGATCTTCCCAACCCATATGGAAAGAAGTACAAAGTTACTGTCGGACTTTAT
TCGCCGAATAATCTCTATTATTAAGATGAATCCTGAGATTCAGACTGTCTACTTCCACAACTTTT
CTCGCTTCGATGGAATTCTCATTCTGAGGCACCTCGTGCTGCATA
Done.