Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: FQ378026
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 385220
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:12871 original size:42 final size:42
Alignment explanation
Indices: 12812--12895 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
12802 CCAAAAAAGA
12812 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
12854 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
12896 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 12312 -- 12811
AGTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTAT
TCTTCGCCTAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCTA
TTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCGT
AGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAATT
CCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGTA
TGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 12896 -- 13395
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:15851 original size:18 final size:18
Alignment explanation
Indices: 15811--15853 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
15801 CAGAACCTAC
15811 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
15830 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
15847 CATAGTC
1 CATAGTC
15854 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 15311 -- 15810
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 15854 -- 16353
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:17235 original size:32 final size:32
Alignment explanation
Indices: 17198--17378 Score: 353
Period size: 32 Copynumber: 5.6 Consensus size: 32
17188 ACGCTCCGCT
17198 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
17230 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
17262 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
17294 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
17326 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
17358 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
17379 CAAATAGGAA
Statistics
Matches: 148, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 138 0.93
33 10 0.07
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 16698 -- 17197
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 17379 -- 17878
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAATGAACAGACAAATCAAAAATTTCACTTTGAATTTCGGACCTCA
ACATCCTGCTGCTCATGGTGTTTCACGATTAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTG
CAGAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGA
Found at i:128492 original size:30 final size:28
Alignment explanation
Indices: 128428--128498 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
128418 AGAAGTCACT
*
128428 TAAGGTTCGCAGATCTGAGCCAATAGGC
1 TAAGGTTCGAAGATCTGAGCCAATAGGC
* *
128456 TCAGGTTCGAAGATCTTAGCCTTTAA-AGGC
1 TAAGGTTCGAAGATCTGAGCC---AATAGGC
128486 TAAGGTTCGAAGA
1 TAAGGTTCGAAGA
128499 GATTAGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 18 0.50
30 16 0.44
31 2 0.06
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (28 bp):
TAAGGTTCGAAGATCTGAGCCAATAGGC
Left flanking sequence: Indices 127928 -- 128427
TCTCGTTTTGAATTACTGAGATTGGCCTTTTGATCAAGGCATCAGATCAGGAAAGAGGGGATGAA
TGAGAACACCGACGGCCTTCTCTCACTTCGCTACGGGCCACCTATGCTTTGCCTTTCTATTATTC
TCCTTGGGTCTCTATTGATGTTTAATTGACTGAACTTCCACCTTTGCTAAGTGAAGCAGCTAGGC
TCTTATGTTGTAGCCAGGAGCTATTTTTCACGTGGTAACACAAAAAGAAAGAAGGCGCGAGCCGA
TGAGACGGTCAAGGCTTACAAAGAAGCTTAGAAAGAAGTGTCGTTGTTCGCAGCCATGGTTCTAT
GTTCAGGGCTCAGCTCATCTGGGATGAAGGGAGGTTTTCTTGATGACATGGCGGGCTCCAAGCTA
CACCCTTCTCTGCTACCAAATCATAGATCTTCCAGAGAAGACCAAAGCGAACTCGATTCGCGTCT
CATCCTCCATTCTATCTCATAGACTGATGCAGAAAAGAAGTCACT
Right flanking sequence: Indices 128499 -- 128998
GATTAGTATAGTATATGCTAAGGAAAGATCCGGTGAATTCGCGACATTAGCCAGCCGCTTAGATA
CTAAACCCTAATAGCCAATTGCAACCAAGACTTGCGAATACTCATGTTCTTTGGTACCCTGCTAA
GGGTGGGTCAATCCTGCTTTGAAGTCAGATGTGTCGACCTAACCTCGTTAGATTGATCTCTGGTC
TACGCTACCTTATTGGTCTTAGGAGATGAATTAGCAACAGTAGCATTGAGTTCGTCTCTTTAGGC
AGGGTTTAGTCGCCAATCCTTTAGATTACCAGGAAAGAATGGGCCAAATCGCCTTCTAGAGAAGA
AAGGCATACTTTCTTATTTCATTAATGGGTGCATATTATTATACCTTATTTTTAAAAACCATTAC
CCTGGATTGCTAGCAGTGAGAAATTCATATGAAGCTAGCTCAAAGCAAGAAGCGTTTCGCCCAAG
GAAAGAGTCTTCCCCGATAGGGGGGAGGTTACGGGGTAGTAAGAC
Found at i:130427 original size:30 final size:30
Alignment explanation
Indices: 130370--130493 Score: 184
Period size: 30 Copynumber: 4.3 Consensus size: 30
130360 GCCGGAATAT
* *
130370 TATTCTTGCTCTTTTGAATT----AATTTA
1 TATTCTTGCTCTTTTAAATTAAAGAAATTA
130396 TATTCTTGCTCTTTTAAATTAAAGAAATTA
1 TATTCTTGCTCTTTTAAATTAAAGAAATTA
*
130426 TATTCTTCCTCTTTTAAATTAAAGAAATTA
1 TATTCTTGCTCTTTTAAATTAAAGAAATTA
*
130456 TATTCTTCCTCTTTTAAATTAAAGAAATTA
1 TATTCTTGCTCTTTTAAATTAAAGAAATTA
130486 TATTCTTG
1 TATTCTTG
130494 TACTATACTA
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.21
30 71 0.79
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (30 bp):
TATTCTTGCTCTTTTAAATTAAAGAAATTA
Left flanking sequence: Indices 129870 -- 130369
AAGCATATAGAAGTTTGGGGTGTATTATGAAATACACCTTTCGCACTGCAGTTTTTGTTTGTTAC
TTGTGTTTCCGATCTGATGATTGCCGGTTTCATTTCCTCTTCTTATTCAATGGAAAAAAGGATGC
CATATACATTCCATGGCAGGAACACCCGAAGGAATTTTCAAAGCCCCTAGCCCCGGTATAGGTAT
ATATAAGCTTTTCTTTTATTTCAGGAGAGGTAAGGAATCTTTCTTCTCCTCTTGAAGGCACTAAA
TAGCCTCATACCTTACTCCTTCTCCGATTAGAAATAATTTGAAAGGAGATCAAAATACTGACTAA
AGCGGGATTTCCCCCTGCTGGAGTTGGAAGAAGCTTAATTAGTTATATTTTCATTTCAATTTCAT
TAAAGGTTGAGTCCGCATTTCACTCCCAAATAGTTTAGGCATTCGAGTGAAAAAGTACCTCAACA
AATAGAAAAGAAAGTCAAGACAAGAAGAAAGTCTAGCCGGAATAT
Right flanking sequence: Indices 130494 -- 130993
TACTATACTATTTGACTTTACCTTTACCTACGCAATAAACTACATGAAAGCAAGCAGAGGAAGCG
CAGGCAAAACCCCGCGAGGCACTCGAGGTATTTATTTATAGCTAACACAAATATACTATGCTAAG
CTATATGGGTTCACTATAAAAATAGAGGTCATTGGGCTCCGGAGAACCTTTGCTATCAGAGCAGG
AAATGTTCAGTGTGGACGGGTCCCCAGCTGCTTCTTTTTTCGGCTTAAGCTGAGAAGTTAGTTGA
GGCGGGTTAACCAACCAATTCCAAACCTGCTTTCGTGGATGCGTAGGTCGAAAGGGCTGAGGCTT
CAGGATCGACTATAACTGAAGGACCCTCCGGTTCGACATTCTATCTCTCAAGTTGCTCTAGAAAC
GCATCTACGGGAGCCTGCTGCTATCGAATGAAGTTCGTAGTCCCATCGTTGACAAAGGGTTTATC
GTCGAGTCTTTACCCCGCCTGATCATGCTTAGTTGGGGCAGATTT
Found at i:141109 original size:42 final size:42
Alignment explanation
Indices: 141050--141133 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
141040 CCAAAAAAGA
141050 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
141092 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
141134 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 140550 -- 141049
AGTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTAT
TCTTCGCCTAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCTA
TTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCGT
AGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAATT
CCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGTA
TGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 141134 -- 141633
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:144089 original size:18 final size:18
Alignment explanation
Indices: 144049--144091 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
144039 CAGAACCTAC
144049 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
144068 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
144085 CATAGTC
1 CATAGTC
144092 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 143549 -- 144048
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 144092 -- 144591
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:145473 original size:32 final size:32
Alignment explanation
Indices: 145436--145616 Score: 353
Period size: 32 Copynumber: 5.6 Consensus size: 32
145426 ACGCTCCGCT
145436 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145468 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145500 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145532 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145564 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145596 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
145617 CAAATAGGAA
Statistics
Matches: 148, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 138 0.93
33 10 0.07
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 144936 -- 145435
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 145617 -- 146116
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAAGAAAATGGGTCATCCATGAATTCCTTCATTGAGTCACTAGACG
GGAGAGAGTGAGTTGACCGAGGGTCATTGATGGAACAAGGTAGCCGAAGGGAAACTTTTGGCTGG
ATCGAATCTGCCTCGTTATTTCGTAAAAAAGTGAGTCTGTCCTAC
Found at i:155353 original size:16 final size:17
Alignment explanation
Indices: 155321--155353 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
155311 AAGAGAGGGT
*
155321 GAAATAAATGCATTCTG
1 GAAATAAATGAATTCTG
155338 GAAATAAA-GAATTCTG
1 GAAATAAATGAATTCTG
155354 CTTCCCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (17 bp):
GAAATAAATGAATTCTG
Left flanking sequence: Indices 154821 -- 155320
CAGTATTGTTTGCATCATTAAATGAAGTATATTATACCTATGGGCTGCCAACAGAGGCAATTAGC
CTCTTTGTTGATGACTAGGATAGAGAAATCTATAGTTATAGATCCTCATCCTGGATTAATTGTCT
GTTCACATACCTATCGTGAACCTTTCCCTTCTTTTTCTTCCATTGACTTTCTCATAACTTGTGTT
ATGGACCTTCTTTTAGAGTATGCTTATCCACGCTTGGGAAAAGATTCATACGCTAAATTCATAAT
CATTGTGAGTATGAAGGTCTCAGATAAAGATGATATTGGATTTTCTCTTGGAAGTGCAATCGTTT
TGACTCTGGAAGATGGGAGTCTCATTCCTAAGGGCAATGTATATTCAAGCATTCAGAGTTTGGTA
CTCTCCCATGCTGATAAGTATGAAAACTTCAGAGTGACTGCTGTCACCCTCAAAATCTTTATTGA
GGGGAAAGTCTAAAATGTGTCCTCTCTCTCATTAGAAGAGAGGGT
Right flanking sequence: Indices 155354 -- 155853
CTTCCCTCTTTTCTTTAAAGATGTCGAGCATATAAATCCTCGCCCTGTAGGGCTACGAAATCGAT
CGTATCCAACACGTATCACTTCTCTAAAAAACAGTGCGAAAGGTATGACTCCGTTCTTGGTTGCT
GATACAGAGACAATCCTCTACGATGGGATGGATTTAGATCCTATTTCTCGGGATAAGTTTTTCAT
GGGATTAGATCCAACTCCCTTTGACAAAGATAAAAAAGTAGAAGTTCATTCACCTTTTGCTATAG
GCGTTATGATTGTTCGTCCGTATGTGCCTGTAAATGAGAGTAATATCGATTACTACTACAGTTCT
GATTATCCTGATAAGATCTTCCCAACCCATATGGAAAGAAGTACAAAGTTACTGTCGGACTTTAT
TCGCCGAATAATCTCTATTATTAAGATGAATCCTGAGATTCAGACTGTCTACTTCCACAACTTTT
CTCGCTTCGATGGAATTCTCATTCTGAGGCACCTCGTGCTGCATA
Found at i:168648 original size:18 final size:18
Alignment explanation
Indices: 168625--168662 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
168615 AAGACAGTTC
*
168625 TTTTCTATTATATTAGTA
1 TTTTCTATTAGATTAGTA
168643 TTTTCTATTAGATTAGTA
1 TTTTCTATTAGATTAGTA
168661 TT
1 TT
168663 AGTTAGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (18 bp):
TTTTCTATTAGATTAGTA
Left flanking sequence: Indices 168125 -- 168624
TCGAAGCCATTGGATCCTTTCCATAATTCTTTAAGTCCCATAGGTTTAATCCTGTAGAATCTGAC
CCACTTTCTCATTGAGCGAAGGGTACGAAATAAATCCGATTGATTTTTCGATCAAAAGTACTATG
TAAAATCCTCGGTTTTTCCTCTTCCTCTATCCCTATCCCATAGATAGGTACAGCGTTTGAATCAA
TAGAGAACCTTTTCTTCTGCATGAATCGATATTATTACATTCCAATTCCTTTCCGATACCTCCCA
AGGAAAATCCCGAATTGGATCATTCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTGTG
CACTCTTCGAATAGGAATCCATTTTCTGACAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAG
ATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGCTCCGATCGATTGCGTAAAGCC
CGCGGTAGCAAGAGAACCGGGGAAAGTATACAGAAAAGACAGTTC
Right flanking sequence: Indices 168663 -- 169162
AGTTAGTGATCCCGGCTCAGTGAGTCCCTTCTTCCGTGATGAACTGTTGGCACCAGCCCGACATT
TTGTCTCTGTGGACCGAGGAGAAGGGGGGCTCGTCGGGAAGAGGATTGTACGATGAGAGAAGCAA
GGTGATTTATCATTTTCAAATATACAACACAGATTCTGGCAATGCAATGTAGTTGGACTCTCATG
TCGATCCGAATGGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGAT
AGCAAGTTCAAAATTCTGTCTCGGTAGGACATGTATTTCTATTACTATTACTATGAAATTCATAA
ATGAAGTGGTTAATGGTGGGGTTACCATTATCCTTTTTGGAGTGACGAATGCGGTATGTGTTCCT
AAGAAAAGCCATTTTTCCATTTTTCGGGGTTTCAAGGGGGCGTGGAAACACATAAGAACTCTTGA
ATGGAAATGGAAAAGAGATGGATTTTCCTTTGGAAAGGGTAAGAT
Found at i:189116 original size:54 final size:54
Alignment explanation
Indices: 189053--189168 Score: 189
Period size: 54 Copynumber: 2.1 Consensus size: 54
189043 GGTCGGAGCA
189053 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGG-AGACGGATGCTGCTGCT
1 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCA-ACGGATGCTGCTGCT
* * *
189107 TCCGGGGATGCGCCTTTCGACTTGAATAATCCACCGGCACCGGATGCTGCTGCT
1 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCAACGGATGCTGCTGCT
189161 TCCGGGGA
1 TCCGGGGA
189169 AAGAAATCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.22
Consensus pattern (54 bp):
TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCAACGGATGCTGCTGCT
Left flanking sequence: Indices 188553 -- 189052
ACAAAGCAAAGATGGAATCGGGATAAAGGGGGGAACAAAGTCAAGTATAAGCAAGCATATCATAT
ATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGATCTGAATCGTAGTTCAGATTCAAGTTG
GTTTAATGATTATTATTATGGTAAATTAGTATATCAAGATCTCAATCTGAGATCTTATGTTGGTT
CAATACGTCCACCTACGAGACTTACCTTTGGCTCTCGGCCCGGTAGGTGTATTATTATACATTGT
CAAAAACGAACGTTCATTAATTTCTTTCTTAAATTTTTTTTTATCCTATTAATTTCTTGTTTAGT
TCTTGCTGTTGTCTCTTGCCTGAGTTTACTTCTTGGATTTGGATGGAGTTTTTCATTTATTCTTT
CTAAAATCGCCTTCATGATACTAGGCTCGGGGCTCCATGTAGTATTTAGGCGCTTGGGATGGGCT
TTCCCTGCCTTGCTTACATCGTGCTCCATGTATATGGTCGGAGCA
Right flanking sequence: Indices 189169 -- 189668
AAGAAATCCTCCCGTGGAGGACCTGGTCCGCCAGGCCAGGATCAAGTTCGAAAGGGCGGGGGAGC
TGACCAAAAAGGCGGAGGAGCTGACCCAAAAGGCGGAGGAGCTGACCCAAAGGGCACAAATCCTC
CAAAACTACAGCTCCCGGAAGCAGCGGGAGAAAGGGAATCGCCTTTCTCGGTTATGTATTTTAGC
CGAAAAGCGCTTTAAATTGATCAAACGAAAAAACGAGAAATTAAAGAGGCTTATAATAGACAACC
TTTTTAAGTAATTGTTTTTTCGTTTTTAGTTCCTTGATCCATTCCGTGGCGCGAAATCCGTCATT
GGCGAAACAATTATTTGGTTATGCTATTTTGGGCTTTGCTCTAACCGAAGCTATCGCATTGTTTG
CCCTAATGATGGCCTTTTTGATTTCATTCGTATTCCGATTCCGGCTTTCTTTTTTTCATTTTTGT
TTTAAAAAGAGAGGGGCCAAAGTAAGACAGTGAAAGAGTGTAACT
Found at i:189281 original size:21 final size:21
Alignment explanation
Indices: 189223--189284 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
189213 AGTTCGAAAG
* *
189223 GGCGGGGGAGCTGACCAAAAA
1 GGCGGAGGAGCTGACCCAAAA
189244 GGCGGAGGAGCTGACCCAAAA
1 GGCGGAGGAGCTGACCCAAAA
189265 GGCGGAGGAGCTGACCCAAA
1 GGCGGAGGAGCTGACCCAAA
189285 GGGCACAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.32, C:0.23, G:0.40, T:0.05
Consensus pattern (21 bp):
GGCGGAGGAGCTGACCCAAAA
Left flanking sequence: Indices 188723 -- 189222
CTCAATCTGAGATCTTATGTTGGTTCAATACGTCCACCTACGAGACTTACCTTTGGCTCTCGGCC
CGGTAGGTGTATTATTATACATTGTCAAAAACGAACGTTCATTAATTTCTTTCTTAAATTTTTTT
TTATCCTATTAATTTCTTGTTTAGTTCTTGCTGTTGTCTCTTGCCTGAGTTTACTTCTTGGATTT
GGATGGAGTTTTTCATTTATTCTTTCTAAAATCGCCTTCATGATACTAGGCTCGGGGCTCCATGT
AGTATTTAGGCGCTTGGGATGGGCTTTCCCTGCCTTGCTTACATCGTGCTCCATGTATATGGTCG
GAGCATCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGAGACGGATGCTGCTGCTTCCGGG
GATGCGCCTTTCGACTTGAATAATCCACCGGCACCGGATGCTGCTGCTTCCGGGGAAAGAAATCC
TCCCGTGGAGGACCTGGTCCGCCAGGCCAGGATCAAGTTCGAAAG
Right flanking sequence: Indices 189285 -- 189784
GGGCACAAATCCTCCAAAACTACAGCTCCCGGAAGCAGCGGGAGAAAGGGAATCGCCTTTCTCGG
TTATGTATTTTAGCCGAAAAGCGCTTTAAATTGATCAAACGAAAAAACGAGAAATTAAAGAGGCT
TATAATAGACAACCTTTTTAAGTAATTGTTTTTTCGTTTTTAGTTCCTTGATCCATTCCGTGGCG
CGAAATCCGTCATTGGCGAAACAATTATTTGGTTATGCTATTTTGGGCTTTGCTCTAACCGAAGC
TATCGCATTGTTTGCCCTAATGATGGCCTTTTTGATTTCATTCGTATTCCGATTCCGGCTTTCTT
TTTTTCATTTTTGTTTTAAAAAGAGAGGGGCCAAAGTAAGACAGTGAAAGAGTGTAACTTCCGCT
TTCGCGTACTGAGAGGCAGGCCCTTGTATCATGGTTAGTTTTTTGCTTGCTTCAATGGTAAGGGG
AAGGGGAGAGGTGAGGAGGGCCCCCTTCAAGCGGACTACTTTACT
Found at i:240825 original size:24 final size:24
Alignment explanation
Indices: 240797--240903 Score: 91
Period size: 21 Copynumber: 4.7 Consensus size: 24
240787 ACAAAAAAGA
240797 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
**
240821 TTTGTCTAAGTTGCTTCGTTTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
* * *
240845 TTTGTCCAAGT---TGCGTCTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
* **
240866 TTTGTCCAAGTTGCTTC---TCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
*
240887 TTTGTCTAACTCACTTC
1 TTTGTCTAAGTCACTTC
240904 CTTTTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
21 36 0.51
24 34 0.49
ACGTcount: A:0.11, C:0.22, G:0.14, T:0.52
Consensus pattern (24 bp):
TTTGTCTAAGTCACTTCGTTTCTT
Left flanking sequence: Indices 240297 -- 240796
GTTTCGGCTTTAGATTCGAGAGTTGGGATTGAGCTTTCTTTTCAGTAAAGCCTCGCATTACTAAC
GCTTAGAGAGCGCTCCCCCTCTCTGACTGGTAATACACTCGGAATAAATCAGGTGAGGCGAGTTG
GAGCCCTAGTGGGGCTTCTCTTCATTCCCCAATGTAGGATGGATCGCAGCTTCGAATATGGAATT
CAAAGGGATCAAATAGGAAACGATACTTTGAATCATAGAACTATAAGGAAATATACGATCAACCA
ACATTTCTCGAATTTTAAAAAGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAA
CCGAGAGATTCATGAATCGGGATCCTGATGCATATAGATACAAATGGTTCAATGGGAGCAAGAAT
TTCCAGGAACATTTCGTTTCTGAGCAGAAGAGTCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 240904 -- 241403
CTTTTTTCTTTGTGAGTTTCGGGAATATCCCCAGTAATAGGTCCGAGATCCGCATTTATGAATTG
AAAGGTCCGAATGATCAACTCTACAATCCGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTT
GAAAAAATGGAAAGCCTTCTTATTGGATGATCATGATACTTTCCAAAAATCGAAATTCTTGATCA
ATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCAT
ACTAGAAATAATCACGGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGA
TCAAAACAATTGGCTGAATCCCGTAAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATA
AAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTC
CCTTTTTATATGGAAAAGGCCCGTATCAATAATTATGATTTTACG
Found at i:240867 original size:21 final size:21
Alignment explanation
Indices: 240817--240892 Score: 98
Period size: 21 Copynumber: 3.5 Consensus size: 21
240807 TCACTTCGTT
* *
240817 TCTTTTTGTCTAAGTTGCTTCGTT
1 TCTTTTTGTCCAAGTTG---CGTC
240841 TCTTTTTGTCCAAGTTGCGTC
1 TCTTTTTGTCCAAGTTGCGTC
*
240862 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTGCGTC
240883 TCTTTTTGTC
1 TCTTTTTGTC
240893 TAACTCACTT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
21 33 0.67
24 16 0.33
ACGTcount: A:0.08, C:0.21, G:0.16, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTGCGTC
Left flanking sequence: Indices 240317 -- 240816
AGTTGGGATTGAGCTTTCTTTTCAGTAAAGCCTCGCATTACTAACGCTTAGAGAGCGCTCCCCCT
CTCTGACTGGTAATACACTCGGAATAAATCAGGTGAGGCGAGTTGGAGCCCTAGTGGGGCTTCTC
TTCATTCCCCAATGTAGGATGGATCGCAGCTTCGAATATGGAATTCAAAGGGATCAAATAGGAAA
CGATACTTTGAATCATAGAACTATAAGGAAATATACGATCAACCAACATTTCTCGAATTTTAAAA
AGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAACCGAGAGATTCATGAATCGG
GATCCTGATGCATATAGATACAAATGGTTCAATGGGAGCAAGAATTTCCAGGAACATTTCGTTTC
TGAGCAGAAGAGTCGTTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATT
GGTCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTCGTT
Right flanking sequence: Indices 240893 -- 241392
TAACTCACTTCCTTTTTTCTTTGTGAGTTTCGGGAATATCCCCAGTAATAGGTCCGAGATCCGCA
TTTATGAATTGAAAGGTCCGAATGATCAACTCTACAATCCGTTGTTAGAATCAATAGGTCTTCAA
ATCGTTCATTTGAAAAAATGGAAAGCCTTCTTATTGGATGATCATGATACTTTCCAAAAATCGAA
ATTCTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTG
ACTCATTCCATACTAGAAATAATCACGGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATG
ATATCCCACGATCAAAACAATTGGCTGAATCCCGTAAAACCATTTCATAGAAGTTCATTGATATC
TTCTTTTTATAAAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTA
ACAAAAGATTCCCTTTTTATATGGAAAAGGCCCGTATCAATAATT
Found at i:245770 original size:33 final size:33
Alignment explanation
Indices: 245728--245847 Score: 231
Period size: 33 Copynumber: 3.6 Consensus size: 33
245718 GAGACGTTCC
245728 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
245761 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
245794 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
*
245827 CCTCTCCCTTTGGTCGAGCAA
1 CCTCTCCCGTTGGTCGAGCAA
245848 GTAAACTCCC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 86 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (33 bp):
CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
Left flanking sequence: Indices 245228 -- 245727
CTACACCTCGTTTCACCCTCCGAAGCATATAGATCTACCCGATCGATCAAGACTCGAACCGAACT
CGCTCATCCTTTTTGGACCCTTCGCCCGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTT
CAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGTCTGTTTTCTTCATCGA
ATAGCGCCCTACACTTTCTTCTTAAGTCAGAATAAAGAGAAAATGGAAGTTTCAGTTAAGGGCCC
TTTTCGCTTTTTAAGCTTTCTTCTCTTATGATTTTTAATAAGAAGAAGAATTTTAGATAAGGAAA
TGACTGTAAGAAGAATCTTATTTCTAATTGAATTACAGTAATATTAATCTATGAAAGAGCTTGCT
CGCAGCTTATGGTTGGCCTTTCCTTCTCTTATGATTTAAAAGCAGAGTCAAAGGGAATAAAGAGA
ATGATAATGAAATGACTGTAAGAATCTTCATTAAAGAGACGTTCC
Right flanking sequence: Indices 245848 -- 246347
GTAAACTCCCTTGAACCTAGCCCTCGGGGATCGGCTCTTTCTCTTCGAATTCTTTTCTAATTCAA
TTACTGTAAGTTTATTCAATTCAATAAGCTCTTTTTAAGCCTCCGGTCTCGCAATTAAATAAGAC
CTTTGGCTTCTCTTTTGCTTGCTTTTCTTCTTCTTTTTCTCTTTTCATAAATGTGCGCATATATA
GGCCTATATCCCCTTTCTTTAAGAAAGGTTTCCAAACCTATTCACTCCCTACACCTTTTAACTAA
AGAACTCGTTAGCATGTGAGAGGGATGCAATTGCTTATGCGGCTGCATCTCTTAGCTCAAAGTGT
GCGTCAACCCCTTCTGGCAGTGGCATAAAGTGCCAGCCTCCGCTTCCTCAGCTTGCTAAAAGACA
GCTTCCGCGGAAGATTCGTTCCTTAAGAACATGCATAGCATTGATTTGAAACAAAGTGCAGTTAA
AGGCTATTAAATATGGCTTAAAGCTTAGTTAATAAGAAAAAGATC
Found at i:251429 original size:12 final size:12
Alignment explanation
Indices: 251412--251437 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
251402 AGAACAACTC
251412 CTGTACAGCCTT
1 CTGTACAGCCTT
251424 CTGTACAGCCTT
1 CTGTACAGCCTT
251436 CT
1 CT
251438 CCTTATGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (12 bp):
CTGTACAGCCTT
Left flanking sequence: Indices 250912 -- 251411
ATCGAACTAAGATGGATCGGGCTGTTGGCTCAGAGAAGGTTTGCTCGGGGAAGGAATAACAAGAA
GTTTATAAGGTAATGCCAATTCACTGACTTGGAACAAGTAAGGAAAAAACAGGCTCTTTCTAAGG
AGGTGGTTATAGAAAGAGATCAGAGTAGAGGTAGTAAAGCTAAGAGCTAGAAAGTAGCAACCCGT
AAAAGCTAGCCAAAAGGCATATGAGGGAGGGGGTTTGCTCGGCTCCGCTCGGAGAGGGAATCCAT
TCCAAAACCAAGGTTGGAGGTTAGGCCTAGAGCAACAAAGCAGATGGTTCGACAACTGATGATGA
GACAACGGACGACCGACCACTTATTGTGATGTATCCCTCCCCTTTGGTATGTCCTCTTCTGTAAA
GGTCAGCGCATGTTTGGTCGTAATCTGTTCGACCAGACCACGTCTTGCAGCTCTTCTGGCGTCAG
GGTTGCGGGAACCTGTGCTTCTTGGTTGAAATTGAAGAACAACTC
Right flanking sequence: Indices 251438 -- 251937
CCTTATGCTTTGGAGACGTTCTCAGCAACTCCAAGATAGATATGTGGGCTGCTAACTTACTGAGA
TGACCGAGAAGATCATACTCCGGCTGTGTGGCTACCTTTTCCGCTTGATCGGCAACCCTTTCTTC
TGGATTCTTGGGTCAGGTCGTGCATAGATCCTTCCCGTCTTGCTGACAGGATTGATTTCGTGACC
AGCTTTTGGCGATTACAGGTGCAATCGTAGCTTCCTTCGGTTCTGGAGGTTGCTTTCTCACGGCA
AACCTCTCGACCTTACTCTCTTGAGTAAGCAAGTCAACTACCTTTAGAGATGGGAGACGACTAAC
TAAGCTAATCATTATGTCCCTTTCTTCTTATTCCTCCCCAACCCTCGGATTGCTTCTCTCACTTT
AAAGACGTTAGCAAGAAGAGCTCTGATTCAACATAGAGCCTGGTCTATTGCTTTTCGTCTGGTAT
GAATGAATTCCTAAGGTTAGTCGATTTCTTCACATTCTTAATAGC
Found at i:263002 original size:42 final size:42
Alignment explanation
Indices: 262943--263026 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
262933 CCAAAAAAGA
262943 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
262985 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
263027 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 262443 -- 262942
GTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTATT
CTTCGCCTAAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCTA
TTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCGT
AGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAATT
CCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGTA
TGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 263027 -- 263526
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:265982 original size:18 final size:18
Alignment explanation
Indices: 265942--265984 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
265932 CAGAACCTAC
265942 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
265961 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
265978 CATAGTC
1 CATAGTC
265985 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 265442 -- 265941
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 265985 -- 266484
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:267366 original size:32 final size:32
Alignment explanation
Indices: 267329--267509 Score: 353
Period size: 32 Copynumber: 5.6 Consensus size: 32
267319 ACGCTCCGCT
267329 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267361 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267393 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267425 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267457 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267489 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
267510 CAAATAGGAA
Statistics
Matches: 148, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 138 0.93
33 10 0.07
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 266829 -- 267328
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 267510 -- 268009
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAAGAAAATGGGTCATCCATGAATTCCTTCATTGAGTCACTAGACG
GGAGAGAGTGAGTTGACCGAGGGTCATTGATGGAACAAGGTAGCCGAAGGGAAACTTTTGGCTGG
ATCGAATCTGCCTCGTTATTTCGTAAAAAAGTGAGTCTGTCCTAC
Found at i:277246 original size:16 final size:17
Alignment explanation
Indices: 277214--277246 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
277204 AAGAGAGGGT
*
277214 GAAATAAATGCATTCTG
1 GAAATAAATGAATTCTG
277231 GAAATAAA-GAATTCTG
1 GAAATAAATGAATTCTG
277247 CTTCCCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (17 bp):
GAAATAAATGAATTCTG
Left flanking sequence: Indices 276714 -- 277213
CAGTATTGTTTGCATCATTAAATGAAGTATATTATACCTATGGGCTGCCAACAGAGGCAATTAGC
CTCTTTGTTGATGACTAGGATAGAGAAATCTATAGTTATAGATCCTCATCCTGGATTAATTGTCT
GTTCACATACCTATCGTGAACCTTTCCCTTCTTTTTCTTCCATTGACTTTCTCATAACTTGTGTT
ATGGACCTTCTTTTAGAGTATGCTTATCCACGCTTGGGAAAAGATTCATACGCTAAATTCATAAT
CATTGTGAGTATGAAGGTCTCAGATAAAGATGATATTGGATTTTCTCTTGGAAGTGCAATCGTTT
TGACTCTGGAAGATGGGAGTCTCATTCCTAAGGGCAATGTATATTCAAGCATTCAGAGTTTGGTA
CTCTCCCATGCTGATAAGTATGAAAACTTCAGAGTGACTGCTGTCACCCTCAAAATCTTTATTGA
GGGGAAAGTCTAAAATGTGTCCTCTCTCTCATTAGAAGAGAGGGT
Right flanking sequence: Indices 277247 -- 277746
CTTCCCTCTTTTCTTTAAAGATGTCGAGCATATAAATCCTCGCCCTGTAGGGCTACGAAATCGAT
CGTATCCAACACGTATCACTTCTCTAAAAAACAGTGCGAAAGGTATGACTCCGTTCTTGGTTGCT
GATACAGAGACAATCCTCTACGATGGGATGGATTTAGATCCTATTTCTCGGGATAAGTTTTTCAT
GGGATTAGATCCAACTCCCTTTGACAAAGATAAAAAAGTAGAAGTTCATTCACCTTTTGCTATAG
GCGTTATGATTGTTCGTCCGTATGTGCCTGTAAATGAGAGTAATATCGATTACTACTACAGTTCT
GATTATCCTGATAAGATCTTCCCAACCCATATGGAAAGAAGTACAAAGTTACTGTCGGACTTTAT
TCGCCGAATAATCTCTATTATTAAGATGAATCCTGAGATTCAGACTGTCTACTTCCACAACTTTT
CTCGCTTCGATGGAATTCTCATTCTGAGGCACCTCGTGCTGCATA
Found at i:284377 original size:22 final size:22
Alignment explanation
Indices: 284352--284393 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
284342 TGATTTCCGA
284352 CAAGTCTTTCTTCATTTTTGAG
1 CAAGTCTTTCTTCATTTTTGAG
284374 CAAGTCTTTCTTCATTTTTG
1 CAAGTCTTTCTTCATTTTTG
284394 GGGGAAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (22 bp):
CAAGTCTTTCTTCATTTTTGAG
Left flanking sequence: Indices 283852 -- 284351
TTCATGGGCCCTTTCTGATCGAGATCGATGTAACCTAGCGCTTTAATAAAGAAGGAAATGAAAGA
AAAAAAGCGAGAACTAACCATGAAAAAGGCCTGTCTTTCTGTACGTGAAAAGATGCCCCTCTCTA
GTCAAATCCAAATCGGCATTCAAGTAAAGGGCGCCGGTTCCCCTAACAACTAATCCATGGCCTTA
CGGGCTCGAGGGTCTCTTTCCTAACGTAAAGCTGTTTTCAACTCCGATCCTCTAAAAGAAGGGGG
CTCACTGACCAGACAGGAAAGAAAGCCTTGCCTTCGTAGCGTCACCCAAATTCTCATAAATAAAG
AGAGAATTTCGTATATAAGGAGATGAATTCTCTCCTTTCTAACTGAGTTCCGCACCCGGACTCAA
ACTAGACCTCGAGGAGAAGGTAGCCGAAAGAGCGCTTCTCCGAGAGACATAGTTCGAAATAGTGC
ATCCCATGCCTTTCCTGGTTGGAAAACCCAACCGGTGATTTCCGA
Right flanking sequence: Indices 284394 -- 284893
GGGGAAAGCAGAGCAAAATAAGAATTGCTATTATGCGTCAACTAGCACAATTTTTTCGAAATTTT
ATAATTTCTCTTTTGATTTTCTTTTCAGAGTGCTTTTTCCGCTCCGGTGACTCTTTTTTTTTATC
TAACAAGAATTTTCTTTTTTTTATTTTAGTCTTTTTGCTTCTGTCTTTTTTATTCAAGCTTTACT
CCCATTACTTCAATCAATTATTTTCTTTCATTTTGAATATAGGCCTTTTTATCGTTGCTGTTATG
ATTCTTTCTTATGTTCGGGCCCACTGGCATACTTACTTCGGGGTATGCTTTGTGGGGGTTTACTC
CTTATTTGGAATGGGAGCACCCAGTACTGGCGGAACTGGGGGAATGTCTTGTACTTACATGATGC
CCTCCGGATCCGATGCCAGTAATGGGAATGGGGAGTGGAGGGGGTATCTAAACGACTCTCCAGAG
GGGGGGGATGCAGTAAGCGACGCTGAAAATGTTCCAGCGGCTGAA
Found at i:290072 original size:39 final size:39
Alignment explanation
Indices: 290017--290092 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
290007 CCCATCCTTC
*
290017 AATATCATGATTGGGTCAACCAGGCCAGATCATGAGTCA
1 AATATCATGATCGGGTCAACCAGGCCAGATCATGAGTCA
*
290056 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGT
1 AATATCATGATCGGGTCAACCAGGCCAGATCATGAGT
290093 GAATAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCAACCAGGCCAGATCATGAGTCA
Left flanking sequence: Indices 289517 -- 290016
GGTTACTTTAGCCTGTTGTACTGGAGTGCTTCATCGTCAAAAGAACAACAATGGGTTGTAGCATT
TTATATTGATTTGTCTAGAGGATGTAAAAGAGGGCTTTCTCGTCTAAAGGCAGGGGTGAGCTTTC
TCACTATAGAATTCGCACTACGAACGAAAGACCAACGAGGATTCAGGAGGAGAAGGAGTAGGAGC
TAGCTTTCATTGAAGTAGAGGCACGAAGTAGCGAAGAATTTCGATTAAAAGAAAGGGAAAAGTGT
GAAGAACTCAAATTAAAAATCCTTTCCATCCCACGAATCCAAAACTCATTTTTGAAAGCCGAGGT
TACCTCCGGTAACCACGCCACTGATTTCTCCAACGAAAGCAATCGACATGATGATTCCTAGCGAA
AACTCGCGAAAAGGAATCAAGCCGGAAGCTTCGATTGAAGAGATTCAATCTTGCACCATCTTCCA
CTTTTATCGAGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 290093 -- 290592
GAATAGAAAATCGAAAACGTACATAGCTGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTC
TACTAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAG
GGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTCT
AAAAGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTCACTACAT
TTATGCTAAGTCTGGTTGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCG
AACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGG
TTGGTCTAGTAATTATAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTAAAAA
ATAGCTTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTG
Found at i:292175 original size:32 final size:32
Alignment explanation
Indices: 292139--292227 Score: 169
Period size: 32 Copynumber: 2.8 Consensus size: 32
292129 TTACTCTAAG
*
292139 GAGTAAGTGAGTATAAACTACCTTACTCTTTA
1 GAGTAAGTGAGTCTAAACTACCTTACTCTTTA
292171 GAGTAAGTGAGTCTAAACTACCTTACTCTTTA
1 GAGTAAGTGAGTCTAAACTACCTTACTCTTTA
292203 GAGTAAGTGAGTCTAAACTACCTTA
1 GAGTAAGTGAGTCTAAACTACCTTA
292228 AAGGGAAGCC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (32 bp):
GAGTAAGTGAGTCTAAACTACCTTACTCTTTA
Left flanking sequence: Indices 291639 -- 292138
AACAATCATTTGATTTTGTTTCTTGCTCTCTCTTAGCAGCGGGAAAGGAGTCTATCTATCTGCCT
AGCTTTGGTAGATTTCCCTCAACGCAATCTAAAGAAATTCTCCAAATCCCTTTTTGGATAAGTCC
GACGACTCAGCAGCAGTGCGGAATTGACTTTCTCGTCCGGTGGATCTGATCTATAGTTAGGGGAC
AATACATACCAAAAGGCTCGAAGAAAGGACGATAAGAAAGCAGAATCAAAAAAAGGTATGTAATC
GCTAAAGCGAAGATTTTGGATTGATTTGAACCTGTAGCCAAGCCAAGGTGAAGGGTGGGTCTAGG
CTTCGGAAGCATAACAGAAATAGCCTAAATCTTCCTCAGAAAGGAGCCAAAAAGCATAAACTAGG
CTAGGCCTTCAGGGCGACTCGCTTAGCATGGTGAGTGAATCAGACCGCAGTGACACAGTCGTCCA
AAGCTTTTGAACCCGAAAAAAAGATGGAATTCTCCTTACTCTAAG
Right flanking sequence: Indices 292228 -- 292727
AAGGGAAGCCAATCTTCATAAAAGAAAGACGCCGGCCAGCCTAGCTCATTCTTGGATGAAGAGCC
CCTTTTAGTCTGACTGACATCATTCTTGAATGAAGAAAAGCGAGATCCTGCCACCACACGCGAGG
GTGCACGGAAAGCAAATCTTTCCCTTTTCAGTTGTTACAACGAGGCCGAATGAGACCCGATTCTC
TTCTGTGAATGGAATGTCTTCCCCCATCCCTTCGTTTACTAACTGTAACTGAATGCCACGCCCTA
GCGAACCTCAGAGGAAGGAAAAACCACCGAAAGGGATAGAAGAGCACGCATTCGACTAGCTTCCT
GAGTCTTGCAACTCAGCTCCTTCGTAACCAGAGTCTTGCAACTCAGCTCCTTCGTAACCAGAGTC
TTGCAACTCAGCTCCTTCGTAACCTGACTGACGCAACTCAGCTCCTTCGTACCTTGTGATAAGGT
TGAAACTGGTCTTGAAGCATAGGCTAGGCAAGGAAGCTCTCCTAC
Found at i:292589 original size:30 final size:30
Alignment explanation
Indices: 292553--292668 Score: 187
Period size: 30 Copynumber: 3.9 Consensus size: 30
292543 CTAGCTTCCT
292553 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
1 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
292583 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
1 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
*
292613 GAGTCTTGCAACTCAGCTCCTTCGTAACCT
1 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
* ***
292643 GACTGACGCAACTCAGCTCCTTCGTA
1 GAGTCTTGCAACTCAGCTCCTTCGTA
292669 CCTTGTGATA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.22, C:0.34, G:0.17, T:0.27
Consensus pattern (30 bp):
GAGTCTTGCAACTCAGCTCCTTCGTAACCA
Left flanking sequence: Indices 292053 -- 292552
AGCATGGTGAGTGAATCAGACCGCAGTGACACAGTCGTCCAAAGCTTTTGAACCCGAAAAAAAGA
TGGAATTCTCCTTACTCTAAGGAGTAAGTGAGTATAAACTACCTTACTCTTTAGAGTAAGTGAGT
CTAAACTACCTTACTCTTTAGAGTAAGTGAGTCTAAACTACCTTAAAGGGAAGCCAATCTTCATA
AAAGAAAGACGCCGGCCAGCCTAGCTCATTCTTGGATGAAGAGCCCCTTTTAGTCTGACTGACAT
CATTCTTGAATGAAGAAAAGCGAGATCCTGCCACCACACGCGAGGGTGCACGGAAAGCAAATCTT
TCCCTTTTCAGTTGTTACAACGAGGCCGAATGAGACCCGATTCTCTTCTGTGAATGGAATGTCTT
CCCCCATCCCTTCGTTTACTAACTGTAACTGAATGCCACGCCCTAGCGAACCTCAGAGGAAGGAA
AAACCACCGAAAGGGATAGAAGAGCACGCATTCGACTAGCTTCCT
Right flanking sequence: Indices 292669 -- 293168
CCTTGTGATAAGGTTGAAACTGGTCTTGAAGCATAGGCTAGGCAAGGAAGCTCTCCTACAACTCG
AGAATAGTCGGGAAAGGGCATAGAAGGGCTTTTAACGCTTAAGATGGGCAATAGATAGGTTATGT
AATCGCTCAAGCTTATTCAAGCTTTTTGGAAGGTAGTTTACTTGCTTACTCAAGAGAGTAAGGAA
TGTAGCTACTTCCTGTCTTGGTGTATGTCAAAGAAGTGGCAGTGTCAGCAGTTGAAAAAGAATCC
ATGGGGCTGGGTGAAGCCCATTAGGCGACCCTGAGTGGAATACCCGTCCTTAGCTCGTTAACTCC
GCTGTTCTCCCCATAGTCTTTTAAAGCGATGCCTTCTCTTCCTAAGCTTGGTTCATCTACTCTTC
TTTCTATGATGATCACTATCAATTCTCCTCGTACTGTACGTCAGTCCGTTCTTTTTCGCTTTCCG
TCGGGCAAGTCTCAGTCTTTTATTGGGGGTTGGTCAGAGTGCTGG
Found at i:323344 original size:18 final size:18
Alignment explanation
Indices: 323318--323354 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
323308 TCGTGAGCCA
323318 TACCCATAGCTCTCTCAC
1 TACCCATAGCTCTCTCAC
* *
323336 TACCGATAGTTCTCTCAC
1 TACCCATAGCTCTCTCAC
323354 T
1 T
323355 CCTTCTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.38, G:0.08, T:0.32
Consensus pattern (18 bp):
TACCCATAGCTCTCTCAC
Left flanking sequence: Indices 322818 -- 323317
GAGTGAATGCAGCCAGCTTGAGATCTCACTTCTAAAGCTTTCATTTTTCTTCTTAGCCGTCGGGT
TCCACACCAAGATCAAATAAGGGACCACTAGTTGCATTTCTCATAGACTAAGGTTGGACCACTGC
CGGAGAGAAAGGCTGACCCTCTCAAAAAACCCTTAGCACAATAAGAGGTGCGGGGGATGGCGATC
CAACTCCTACCTGGCTTAGACGGAACAGACAGAGATCCTTTCAAGTCAAGCCCTCCTCACTCAAC
AAGGGGAATGACTAGAATCCTGCGGGGGTTAGTAAAAGACTGGGCCAACGGGGCTCCACCTCAAG
GAAGAGAGATCAATCCAATCGTTTCTTACATCGGTCTTAGAAAGCAAAGCCCGGGGTTTCTAAAC
CCTTTGAGTCCTACTCTGAGATGAGAAGTCGAAAGACAGAAAGAGAATTGCCTCTTATTCGTACT
CGCTCGCCTATGAACGAGGCAGGTGCTATAACCGTTCGTGAGCCA
Right flanking sequence: Indices 323355 -- 323854
CCTTCTAGTAAGGGAAAGTTCTGATAAGGAAAGCAATCATAAAAGCATGTCCACACTAAGAAAAG
CGTACTCCTAGACTAGTATCTCCGTGTATTCCCTATCGAGAACAAGAAAGAAACTATTAAGACAC
TAGAAAGAACTCGCTCTTACCGCCGGACGGATACGAACGCATACGAAATCGATCCTATAACAATC
GCCTCCAGGCGACCCCCTCGGAAACCCCCTCCGACTCCTATAATGCAAGTGCAATTGAAAGATTC
TCGTAAGTGACCAGTGAACCTGCTACTTGCGCAGTTGCTAAAACGTGAATCGCATCTCTAAAGTG
AGAAGGATTTGATATTGGGCATTGCCTTCCCTTACTTACTAATGGGAAATCGATCAGTCCAACCT
TTTCTGATTCACGTAGCAAAGAAGCCCTTCTAGGTGCCTATTCTTTGTGCGAGGGTGGTAAGGGG
TGCTTTCCCTGTGCCCATTGCCCCTACTTTTAGTAATTATATGCT
Found at i:326142 original size:14 final size:14
Alignment explanation
Indices: 326123--326149 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
326113 TGCGGCAGGC
326123 ATTATCCGGGAACG
1 ATTATCCGGGAACG
326137 ATTATCCGGGAAC
1 ATTATCCGGGAAC
326150 TTACAGAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (14 bp):
ATTATCCGGGAACG
Left flanking sequence: Indices 325623 -- 326122
CAGAAAGTAGCGACACTGATACCTTAGAACTACCAAGTACCAGGCCTAGACCGGGGAGTCGGAAC
TAATAACAGCTTTTATAAACTCCAAATCCAACTCTTCCAACTCCAAGTTGAACGCAGGAAACTCT
ACCTACAACCCTCAATTCCGGAGGTTGGCAGCTCATCAACTACGAGAAAAATGTGATCGCAATCA
AGCACATAACATTGAATCTCGTGCAAGACATTCTTTAGCTAAGTCTATAGCAGCTGATTCAATAG
CGGATGGTCTTGTTGAAGGCTTTTTTACTTCTACTGAGAGCAAAGTCCTTACTTACCAGACCGGG
CTACTTGAATAGCAGAAAGAAAAAATGTCACGAACCCAACTCCTAGGTCACTAGGAAGAAGAATG
GAGGGAAATAGAAGAGGTCCTGTAAAGAAGCTTTCATTCGATGCTTCTGATTCAACTCCCAGACA
AACAAGGAAGTATGCGCGAAGATAGGGTTAGTCCCTGCGGCAGGC
Right flanking sequence: Indices 326150 -- 326649
TTACAGAAGGTTGGCGTGACACGCCTAAATCCACAACGCTTCAGGCGAAGAGATATATCTTTCCG
CTTTAGCGGCTTGAACCCTTCGATCAAGAGATACCTTAAATCAAATCAACTAAGTAGCTGACCTC
TTAGACGTTCGTGGGTATTCAAATTCATACATAATCTTCTCCGACATGAGATAGAGTGAGAGGGC
CTATTCCATAGAACAAACTCAGCAAAGAAGGATCCGTATTCCACCTCAGATGGTAGAAGGGGCAA
CTCAGCCTTGTCTTTTTATTTGGGCTAGGAACCCAGGAGAATGTTCAAAGCGATAAGAGAACAGG
TCTTTTCAGAGAAGCTCTTGCCGCTCTTCTGTTAGAGCTCTTTAGTCCCATCCCTACCAAAAAAA
GATCTCCCCTTAAAAGGTACGACTGAAAGGAGTCGTCTCGGTCTTCTCGAAAGGGAATTCTTTGA
CCGGCGGGTGCGAATCGGTAGCTCTAAAACTAGCTCTGGCGAGTT
Found at i:342021 original size:66 final size:66
Alignment explanation
Indices: 341915--342109 Score: 372
Period size: 66 Copynumber: 3.0 Consensus size: 66
341905 GCAAAATCAA
*
341915 TAGGTGCCGGAGCTGCTTTCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
1 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
341980 C
66 C
341981 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
1 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
342046 C
66 C
*
342047 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGAGCGTCTG
1 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTG
342110 GATCAGGGAT
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 127 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (66 bp):
TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
C
Left flanking sequence: Indices 341415 -- 341914
CTTGATCATTGCATTGAGTGCGTGGTAAATGCTTTTGTTTTGACTGAACCTCCCATTGCTCTCTC
TCCGATAGCATGCAGCTTATAAGGAAGACAGATATCTATAAAGTGTTCAGTGATATGACTTTCCT
ACTGATTGAATCGCTTAAATGAATGAAAGGAAAGGTTGCTTTTAGGAGAAATCTGCCCCCGTAAG
AGGCGTTGCAAGCAAATAGTTTTTTGAAAAGCGGCGAAGCTTGTCTTGTAGAAAATAGAAAAGTT
GTATTGTTATTCGTAGAGGGGTCGCGGAAGAATATTGGGTTCGAGTCCCGAAGGTAGGGGATGAT
TATCGGCTCCTCATAAATCTAAAAAAGGAGCTGGGGCCGGATCACCCTATTCATTTGTTCTAAAA
AAAGAGAATAAAGAGGGGAAGAATCGACAAAGAATGACGAACATAAAATCGTGAATGAAAAAGCG
TTAGGCGAATGATCTACTCTGTTATGTTAGAAGGCGCAAAATCAA
Right flanking sequence: Indices 342110 -- 342609
GATCAGGGATGCCTGAAGTTATTCTTCAGGGAATACCGGTTCCTCCGGGTATCGATCTAGCCTCG
ATCTATTCTTCGCCATTTTTCTTCAGTCCCTCTGTTTGGATCTCCGGTGATATTGAGGATCCTTT
GATTATCTCGAAGCTCAGTAATTTCAATAAATTTTTATTAGTTCTACAGAAGGATTTTTTTCAAG
GGACCATACAAGGCCCCTATATCAAAGCTCTCCAAGGGGTATTGGACCAAACTTCACCCGCTTTA
CTAGCGGGAAAACTGGACTTCCTACTCATTAGAGAGTACAACTCTTGGTATAACGTTTATGCTAA
GAATATGGGTCTCGGTGTGCCCGTACATGATTGGTATGTGAAGAACTTTGGTAAATTTGTCCCTT
CCCCCCTGGAGCCCCTCTTGACTGACAATTTTGGTTTCTTTTTTATTGGCATCCTTCTCATAGTT
GTGTTTTCTATCTCTCTATTATTATGGCGCAGAAAGAGAAAGAAT
Found at i:352179 original size:17 final size:18
Alignment explanation
Indices: 352157--352199 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
352147 ATACCTTTAT
352157 TGCTTTACTTCC-TTT-C
1 TGCTTTACTTCCATTTCC
*
352173 TGACTTTATTTCCATTTCC
1 TG-CTTTACTTCCATTTCC
352192 TGCTTTAC
1 TGCTTTAC
352200 CGGTTGGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.09
17 9 0.41
18 8 0.36
19 3 0.14
ACGTcount: A:0.12, C:0.28, G:0.07, T:0.53
Consensus pattern (18 bp):
TGCTTTACTTCCATTTCC
Left flanking sequence: Indices 351657 -- 352156
GACAGTAGCTTTGAATCGGATGTTAACGAATAGGCTGTGTCCTCTCTGTCCAATCGGTCTAATCC
GATGGCATTCTTTCTTGAAACTCAAATCCTTCCCCTGCCTAAAAAATCTCCCTTTTTTCCCTTTC
ATTCATTCCTCATGCACTGAGAAGTCTCAAAGATGCTTACTTTGTCGGAGGGCCTTTTGCCCGCA
CATTCAAGACTACAGCTTAGCTTACCTGTGATTGCAGGGATATTCTTATCCCAACTCTTTCCTTG
GCTTCGGGTGCACTATGGAAATGAATCGTACCGGGGTGCTTCTTTGTGAAAGGGCGAGCGAATGC
ATTTCGAGGAGCTAATAAAATCCCTGGTAGATCTTTGCTACCTTTATAGCTATGTATATCCCAAT
ATCCTGACTTTTTTCTTCGCCCCTGGCTTTCTAGCCTAAGGCCAATTAGACTGAATTAGTGGTAT
TAGTATGCCTTTCCTGATTCCTTTTTTGCTTTGCTATACCTTTAT
Right flanking sequence: Indices 352200 -- 352699
CGGTTGGAGGAAGAGACTCAGCTGTTTCAGCCCCGTTTGTGAAAGAAGTGAAGTCTACTTCCTTT
TCTCTTTGACGGACACCTTCCCTTTTGAATGTACTCGAAGCAAGATGCCCACAATCAGATGCTAT
AGGAACGAACTGAACTTCGAATATGTATAGCAAGATCTTCAGTCTGAAAGGTTTCCCCTAATTAC
CCAATCTGACTCAATAGGAACTGCACTTAGACTTTCCTCTATGGCTTCGCATGTCTCTCTAGTGG
ACGGAGGGAGCGAGCTATAATCTAAAGAAAGGAAAGAAGCAACTCACATACTGATGATATGCGCT
AAAAGCCTAAAAAGAGAGCTAGTGTCCTACCTAAGTGAACCCGAAGCGAGAGCACAGGTAGAGCC
AGTTTCTTTTTGTGACCAAGAAGGAGCGGGTAGTGGATTCAGTAGATGTAGAGTCAGTTCGTTCT
CGTCCCAAAAGGAGCATTAGCAGGCACGTATCGATGTGCAAATGA
Found at i:378986 original size:18 final size:19
Alignment explanation
Indices: 378963--379005 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
378953 TAGCACTATA
*
378963 GGGAATATAGAAAG-ATAT
1 GGGAATATAGAAAGCAGAT
*
378981 GGGAAT-TAGGAAGCAGAT
1 GGGAATATAGAAAGCAGAT
378999 GGGAATA
1 GGGAATA
379006 CCATAAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.44, C:0.02, G:0.35, T:0.19
Consensus pattern (19 bp):
GGGAATATAGAAAGCAGAT
Left flanking sequence: Indices 378463 -- 378962
AACGGCACTCCGGTCAGGAGGGCGGAGCCCCCTAAAGGGTGAAGAGCGAAGCAAAGGTCTATCCT
GTAGACTGCTTTCTTAGTTCTCAAAGCTGCTTTCTCTTTCTGGCTGCTATATGTCTAAACAGGAG
AGGGTTTATGAACCTTACAGAGACACTGCACTAGATGCGCATGAGGGAATGAATTGAGACTACCA
CACACGAATCCCATACCTCATGATGTAGTTGCTTATCCTTGGTAGGACGTATTGCGATAGAGCTT
TCTCTAGTAGCAGTAGAGAAACTGCACTGTGGAAGTTCAACGGAGAGAATTTGTTGATCTTAATG
ATGAGAGTATGAAAGTTAGATCGGGTCTATGCCTCAGCATATTCTCATCGGGTTAGTCTAAAAAA
GAGGAGTTGAAAAGCTCTAGTCTTTACGCCCTTCGTTCAAAATTCCGGTTAAAAGACTTAAGAGC
AAAGTTCGAAAGAAAGAAGGAGAGAGGTAATGGTATAGCACTATA
Right flanking sequence: Indices 379006 -- 379505
CCATAAGAGAGATCAACTAGAGCTTATGCCAAGGATGACTTTCCAAAGACTAAAAGTCTATTACT
CATTTTGTTTTGAAAAGGATATCCCTAAGAGGATTGCTAGTTAGCCACCTTCCATATACAACCGG
TGGAATAACCAGCTTCAGGAATTGACTCTGCTACTCTTTCATCCAAGCCCAGTTCAAGCTCTCAG
ATATAGGCCTCGTCTTGGTCGACTATCACCAAACAAGGTCAGAATTTCCGGTGTTAAGCATGTAG
CTAGACTTTCTTTTTTCAAGAGATTCTGTAAGCAAAGAAGGGAATCCCTAGTCAAGGAAGTAAGC
TAAGAAGGTAATTGCTTTGAAATGCCTAGTTCTTAGCTCTTAGCGAGAATAGGTTCGTAGCCAAG
GTAGGGCCGAATCCACTTAAGTAAAGCTTCCCAGCAGTCAACCCAGCATTGAGTGAAGTTCCTTC
CTTCCCTCAGCCCTTTCCATTCTTCTTTCCATGTAAGGTAATTCC
Found at i:381113 original size:42 final size:42
Alignment explanation
Indices: 381061--381142 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
381051 GTCACCGGGG
*
381061 AAGACTGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
1 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
381103 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGA
1 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGA
381143 CTCAAAACTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.21, G:0.30, T:0.11
Consensus pattern (42 bp):
AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
Left flanking sequence: Indices 380561 -- 381060
ACTTGTCGTCTAGTTTCAGGAAATGTTCGGAATAAAGAACTTACACTATCGCAACGCATCGCTCT
CCGAAAATGGAGAATGAAGAAAAAATCTATTAAGAAAAAGATGTATCCGAGAAAAAATCGTAACA
GTTACATACAATTACGAACTACACGAAAGTTGTCCCTTTTTCATGGGAATTTACCCATCACAAAG
ATGCACAGAAGAACAAAACGAACTTCATATATCCCTTTTCTACTCAATCCAGAAACAAGATTGGA
CGTTATTCTGGTTCGTCTACATTTTTGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATC
GAAAAGTGTGTGTGAATAATGGAATAGTAAACATTAGTCATTTTAAAGTTTCCCACGGTGATATA
ATATCTTTTCAAGAAAATTACGCGAGAACCCGCGGTGAAGAAATAAGGAAATTTTTCTATATCAA
AATATCAGTTGAAAAAATCATAGGCAAATTAAGGGGTCACCGGGG
Right flanking sequence: Indices 381143 -- 381642
CTCAAAACTAAGAAGGGATGCCGCCTACTACTAAAAGACCGGTTTTTGCAAAAGTTACATTCTTC
TATGCAAGAACAAGACTTAGAAAGAACAAAGAAGTTTGGATCCGACGCTGAGCACAACAGAATGA
AGAGGAATTTTTATCACTCCGTGACCTTATTCTTATCGAAGAAGAGAAGAATCAAAAGGATAGAA
CTACCTACTCATTATTCGGAGGTCAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAA
CATAGATCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAAGG
GACGTGGCCAAAACACATAAAGATCGGCGTAGTCGCTCATAGGGACATATCTATCCGGATAGAGA
TAAGGACAGGGATCCATCTAGAAAAAATATTGAACCGGTTTCATTTTTTTTTTTCTTGATTCTGA
TTGATTGCCTTTTTTTGACGACAAGTTTTAAATCTTAATGCAGGC
Done.