Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_024519
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 106198
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Found at i:1043 original size:16 final size:16
Alignment explanation
Indices: 997--1044 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
987 AGTGCTCTTC
* *
997 ATTTATAGTATTTTCT
1 ATTTATACTATTTTTT
1013 ATTTATACTATTTTTT
1 ATTTATACTATTTTTT
*
1029 ATTTATATTATTTTTT
1 ATTTATACTATTTTTT
1045 TTTTTATTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (16 bp):
ATTTATACTATTTTTT
Left flanking sequence: Indices 497 -- 996
TCACGCCCTTTTTTTTTTTGTGAGAAAAGGCCGCGGGCCTGTAATCTAAGCTCAGATAGTTCAAA
ACACAAAAAGAGAAGTTACAAGAAGATTTCGAGCTTAGATTGGACGAAGAGAACGCCGCAGCCTT
TGATGCGGCTCTGAAAAAAGAGAAGTTAAGTAGGTGTTACCAACTACTATTCCTATTTAATTTTT
CTATATTATACAATCTGCAGCAATCCTGCAGTTAAGGAGTTGTTTAATAGCAACTGTGAATAACA
GTATAGATATAGATATCTTCATATTTAGCTCCCGCAAATTAATTAATTAATATCTATGATTTTTC
TATGAAGAGCGGATTCCCGTTATTTTCAAGTTCCGCCAGTAATCTACGTCACCGTCAACATTAAT
TATCTATCTGTCTTTTTTATTAATTATCCAAATTATGCTAACCTATCTTATGAAACCCGGCCCGG
CAATATAATCAGTACTGGCGACACGATTGAGAAGCAGTGCTCTTC
Right flanking sequence: Indices 1045 -- 1544
TTTTTATTGGCCATTTATTAAAAATTTTCTGTAGTTTGAAGCTCGGCCTTGGTTCTTGTTGAAGC
GAGTAGTAATTTCTGCTGTTTGTTTGACAGCTTATTCGTTCTACGCTCTTTTATGCACCGTATGC
GGAGTGCTCCTTTAATATTAAGGAATACGTCAGAAGCATTGGCAATCTATACATTATTGCCATAA
CTGTTCAAATATCTGTCCTCGTTATTTAATTGTTTTCTTCTTTTCTAGCATAACAAATTGAGTTG
CCATATTCCAATTAATTGATAAATTGATTACATTAAATTCATAATTAGTTTTGGCGGCCGAAGGC
CCTTGTTAAATTAATATCTTTTTGCCATTACTTTTCGGGGCGAGGCGGGGCTCCGCCCCCCCAAT
GGACTAAGTCCTTAGAGGGCAGAGCGGGTAAGTGCTTAAGTGGCACCATCTGCTAAGACGTCTAA
ATGCTTTCCTTGATAACCGGAAGTTCTGAAAAAGTGTGAAATGCC
Found at i:15921 original size:14 final size:15
Alignment explanation
Indices: 15902--15934 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15892 GGCTATTTCA
*
15902 CTTTATT-TTTTTTT
1 CTTTATTATTTCTTT
15916 CTTTATTATTTCTTT
1 CTTTATTATTTCTTT
15931 CTTT
1 CTTT
15935 GGTATTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (15 bp):
CTTTATTATTTCTTT
Left flanking sequence: Indices 15402 -- 15901
GTTAATCAATATACCAATAATTAAATTTTCTGTAAACTGGTGGAATACATTGCATCAACCTTCCA
GCATTAGCCAATTTGGTACTTCAATACATATTTCTATGCTCATTCCAATCCTGTTAATTCTTATT
AGCTTTCTTTGTTTAAGCGGGATTTTTTTTATTTTGGAAACACGTCAAATTATTTTATCTTTTTC
TAGTTTTTCCATAAAAAGTCAAATAAATCCGCAAAACAACAATAGAAAACAGGTTTTTTTTTATA
CAAACAATAGATCAAGCAAAAGCACCTAAGGAAAGGTGGACTTTTATTGGGTTTAAGCAAGTTGT
TCAAGGCTTTATAAGAAGCAAAGCAACGCTCTGCGTTAAAAAACGCAAAAAAATAGATTTTTTTT
GCCAATTATAAGCAAAATTTACTGAAATGTATAATGAATTGGGCCATTATTTTTTAGTACTGAGT
ATTTTCGTTGCATTAACTTACAACAAAAGACCTGCGGCTATTTCA
Right flanking sequence: Indices 15935 -- 16434
GGTATTTTGTTTTGCTATATTTCTTCTGATTTTTCTAATTATAATGTATTTACCAACTCAAATGC
TAATGCGCCTTTATTTTATAAAATATCAGGAACATGGTCTAATCATGAGGGCAGTTTGTTATTAT
GGTGTTGGATCCTAAGTTTCTATGGATTTTTTTTGGGTTATCGGGTTCGACCTTGCAATGTTTCA
AAACGAGGGCGCAGCAAAAATCTATTTTTTTTTCGCAGACCGCTTGTGGCTTTTTGCTCTGCTTT
CTTTATAAAGAAAGAGAATAAACAATTCAGACATCATTTGTTGCAGAACCTGTTTGGTACTATAA
ATCGTAAAAGCTCCCTTGAGAGCCAATCCAAAGCGGCGCCCTCAGGTATCGTTCAAGAGCCCTCA
AATAAAAGGTTAGAAAATAATGCAAATACAAAAGAAAATAGAAGGCCCATAAGGCTTAAAAAATG
GAAAGAGTTGAAAAAAAAAAAATCTAGATTTTTTTTTTTGCTTTA
Found at i:18784 original size:19 final size:20
Alignment explanation
Indices: 18742--18784 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
18732 GGATGTTGAT
* *
18742 CATGACTTTCGAAAAGTTCC
1 CATGACTATCGAAAAGTTCA
*
18762 CATGACTAT-GAAAATTTCA
1 CATGACTATCGAAAAGTTCA
18781 CATG
1 CATG
18785 GAGGAGTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
CATGACTATCGAAAAGTTCA
Left flanking sequence: Indices 18242 -- 18741
GAGCTAAAAATGCATTTTTTTTCTTTTTTCTTCTTCTTTTTCATTTTTCTATTTTTAAATTTATG
GGAGACTTGTCATATTTAGAATCTTTCTGTGGTGTGCTTTGTTTTTTATTATTTTGTACATTTTT
TTTATTATTTAAATATAAGCGCGATACGTGGGCAAACAAGGAGCGTAAGCTTGGAATAAAAGAAG
AAATGAAACCGCGTAAGCGGGCACAAAGAAGAAAGCGCCAAGCGCTTTGTTGGCCTAACAAAAAA
AAGAAACAAAGAAATAAAAAGAAAGAAAATTTTTCCTTTTTATTTCTTTCAAATAAATCAAAAAT
ATTTTTGATTTATTTGCTGCAATTTTCAAAAACCTTCGGCTTCAACGAAAAAGCCAAAATTTTGG
CTTTTTATTCTCTGCTTGCTTTTTCGCAAGCTTATTCTTTCGTCCTTGAAAATATTTGGAATAGA
TTTTTTCTTGTTCGCGCCTTACCAAAAAGACTGATGGATGTTGAT
Right flanking sequence: Indices 18785 -- 19284
GAGGAGTTTGCATCTTTATTATGGGTGTTATTCTGTCGTGCGACCCGGCAGCTTATGCGCGATCA
TTTCGTGTTTAAGCTCACGCCATGTGGGCGTGAACTCTGGTTGAATTCGGGTTCTAAATCCCGCC
GCTGAGATGCTCAGTCGACTCTTGAACCTTAATAGGAAGACGGCTTCTTCCCAAATTAGTGCAAA
AGGTTCAAGGACTTAGGATGAACTTAATGTGAATGGGTATAAGCTTCGCTGCTCAAAAACACCCA
GTATTGACCACACTGAGAGACTTGCCAATGGCAAGAAAGGCCGCGGGTAACGCTAGTTGGCGAAA
TGGCGTTAAGCATTCCTAGCAATACGGAAAGAGAGGTCGTGATGATATCATCTACGTTCGTACTG
TTCTTCGTGGAGTAAATCTCACATCCAAAAATCTAACCAGGGAACGGAATAATTCCCATTAAGTT
CCAGTAAAACTGGCAGGCCAGCCGGGCCGTAAGCTAGTGGGAACA
Found at i:26069 original size:18 final size:18
Alignment explanation
Indices: 26046--26103 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
26036 AGAAAAAAAA
26046 TATATATATATTTTTTTTT
1 TATATATATA-TTTTTTTT
26065 ATATATATATATTTTTTTT
1 -TATATATATATTTTTTTT
26084 TATATATATATATTTTTTT
1 TATATATATAT-TTTTTTT
26103 T
1 T
26104 TTTTGCTGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
18 11 0.30
19 16 0.43
20 10 0.27
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TATATATATATTTTTTTT
Left flanking sequence: Indices 25546 -- 26045
ACCGATTTCTAAATAAAGAATTTTTTCTTTCTTTTGGGGGAGAGTGGCCGAGTGGTTAAAAGCGA
CAGACTGTAAATCTGTTGAAGGTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCATATACTCCGT
ATTTGAAGAATAGAGACGAAGCACTTGTTTTTGTGCTTATCCTTTCATGCAATTAAATAGAGTGG
AACTTTCTCAGAAACATATTGAATGCTTTGGTATTCGAGCCCTCTCCGAACCGTACGAGATAGTC
GCCCATCATACGGCTCTCCAATTCAACCTCTATTCGGATTTGCCTTTGTCGTTAGATTTTGGCTT
GTTTTTCTAGTGACCGATCTCTAAGTGGCTTAAGTACCATAAAGCAACTTGCTTTTTCATTATAA
TGATCATGGAGAATTCTAACAAGAAATAATAACATAAAAAAAATGCATTTTCATTATCTTCTTTG
AGCTCATCCTTAATACTCTGAACATGGTGCATTCTAGAAAAAAAA
Right flanking sequence: Indices 26104 -- 26603
TTTTGCTGGGGCTTAGCTAGAAAACGTGGTTGAATATGGTCTGCTAAGGTACAGCAGACGATTAG
GCCCCTTCCCTTTTGTTAGCAGTTTTAGCGAAAAAAATCTTTTTACTACGTACGTTACTACGTAC
GGCTCAGGCGGGTACTATGGGCCCTCTGCTATCCACTTCGGTCAGCTGGACGAAAGTGGATTTCA
CCGGTGTTGCCTACAGTTTTTGGCTAATTTTAATTCAAGGCCATTTTGCGTTGAGATGTCGTTTA
GTCTTTTGTCCCCATTAATTTGGGTAATCTGCTCCCTCGTGCAGGCTCTGTAATATCCGCCCGCA
GGGTTTCTTTTTCTATTCTGGTCTTACTATAATTTATTGATGGCAGACCGAGAGCTTGACAGCGC
GCACTCGTGTGCATTACCACAGGGAGTTCCCTGTGATTAACTGCGGGTCCAGTTCGACCGAAAGA
GACTTTGATTTGCCAGAGCAGGGGCTCATCTCATACAAGAGCAGG
Found at i:26070 original size:20 final size:20
Alignment explanation
Indices: 26045--26104 Score: 120
Period size: 20 Copynumber: 3.0 Consensus size: 20
26035 TAGAAAAAAA
26045 ATATATATATATTTTTTTTT
1 ATATATATATATTTTTTTTT
26065 ATATATATATATTTTTTTTT
1 ATATATATATATTTTTTTTT
26085 ATATATATATATTTTTTTTT
1 ATATATATATATTTTTTTTT
26105 TTTGCTGGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
ATATATATATATTTTTTTTT
Left flanking sequence: Indices 25545 -- 26044
GACCGATTTCTAAATAAAGAATTTTTTCTTTCTTTTGGGGGAGAGTGGCCGAGTGGTTAAAAGCG
ACAGACTGTAAATCTGTTGAAGGTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCATATACTCCG
TATTTGAAGAATAGAGACGAAGCACTTGTTTTTGTGCTTATCCTTTCATGCAATTAAATAGAGTG
GAACTTTCTCAGAAACATATTGAATGCTTTGGTATTCGAGCCCTCTCCGAACCGTACGAGATAGT
CGCCCATCATACGGCTCTCCAATTCAACCTCTATTCGGATTTGCCTTTGTCGTTAGATTTTGGCT
TGTTTTTCTAGTGACCGATCTCTAAGTGGCTTAAGTACCATAAAGCAACTTGCTTTTTCATTATA
ATGATCATGGAGAATTCTAACAAGAAATAATAACATAAAAAAAATGCATTTTCATTATCTTCTTT
GAGCTCATCCTTAATACTCTGAACATGGTGCATTCTAGAAAAAAA
Right flanking sequence: Indices 26105 -- 26604
TTTGCTGGGGCTTAGCTAGAAAACGTGGTTGAATATGGTCTGCTAAGGTACAGCAGACGATTAGG
CCCCTTCCCTTTTGTTAGCAGTTTTAGCGAAAAAAATCTTTTTACTACGTACGTTACTACGTACG
GCTCAGGCGGGTACTATGGGCCCTCTGCTATCCACTTCGGTCAGCTGGACGAAAGTGGATTTCAC
CGGTGTTGCCTACAGTTTTTGGCTAATTTTAATTCAAGGCCATTTTGCGTTGAGATGTCGTTTAG
TCTTTTGTCCCCATTAATTTGGGTAATCTGCTCCCTCGTGCAGGCTCTGTAATATCCGCCCGCAG
GGTTTCTTTTTCTATTCTGGTCTTACTATAATTTATTGATGGCAGACCGAGAGCTTGACAGCGCG
CACTCGTGTGCATTACCACAGGGAGTTCCCTGTGATTAACTGCGGGTCCAGTTCGACCGAAAGAG
ACTTTGATTTGCCAGAGCAGGGGCTCATCTCATACAAGAGCAGGC
Found at i:26106 original size:22 final size:22
Alignment explanation
Indices: 26045--26107 Score: 101
Period size: 22 Copynumber: 2.9 Consensus size: 22
26035 TAGAAAAAAA
*
26045 ATATATATATATTTTTTTTTAT
1 ATATATATATTTTTTTTTTTAT
*
26067 ATATATATATTTTTTTTTATAT
1 ATATATATATTTTTTTTTTTAT
26089 ATATATAT-TTTTTTTTTTT
1 ATATATATATTTTTTTTTTT
26108 GCTGGGGCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
21 10 0.26
22 28 0.74
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
ATATATATATTTTTTTTTTTAT
Left flanking sequence: Indices 25545 -- 26044
GACCGATTTCTAAATAAAGAATTTTTTCTTTCTTTTGGGGGAGAGTGGCCGAGTGGTTAAAAGCG
ACAGACTGTAAATCTGTTGAAGGTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCATATACTCCG
TATTTGAAGAATAGAGACGAAGCACTTGTTTTTGTGCTTATCCTTTCATGCAATTAAATAGAGTG
GAACTTTCTCAGAAACATATTGAATGCTTTGGTATTCGAGCCCTCTCCGAACCGTACGAGATAGT
CGCCCATCATACGGCTCTCCAATTCAACCTCTATTCGGATTTGCCTTTGTCGTTAGATTTTGGCT
TGTTTTTCTAGTGACCGATCTCTAAGTGGCTTAAGTACCATAAAGCAACTTGCTTTTTCATTATA
ATGATCATGGAGAATTCTAACAAGAAATAATAACATAAAAAAAATGCATTTTCATTATCTTCTTT
GAGCTCATCCTTAATACTCTGAACATGGTGCATTCTAGAAAAAAA
Right flanking sequence: Indices 26108 -- 26607
GCTGGGGCTTAGCTAGAAAACGTGGTTGAATATGGTCTGCTAAGGTACAGCAGACGATTAGGCCC
CTTCCCTTTTGTTAGCAGTTTTAGCGAAAAAAATCTTTTTACTACGTACGTTACTACGTACGGCT
CAGGCGGGTACTATGGGCCCTCTGCTATCCACTTCGGTCAGCTGGACGAAAGTGGATTTCACCGG
TGTTGCCTACAGTTTTTGGCTAATTTTAATTCAAGGCCATTTTGCGTTGAGATGTCGTTTAGTCT
TTTGTCCCCATTAATTTGGGTAATCTGCTCCCTCGTGCAGGCTCTGTAATATCCGCCCGCAGGGT
TTCTTTTTCTATTCTGGTCTTACTATAATTTATTGATGGCAGACCGAGAGCTTGACAGCGCGCAC
TCGTGTGCATTACCACAGGGAGTTCCCTGTGATTAACTGCGGGTCCAGTTCGACCGAAAGAGACT
TTGATTTGCCAGAGCAGGGGCTCATCTCATACAAGAGCAGGCTAG
Found at i:29205 original size:12 final size:12
Alignment explanation
Indices: 29188--29212 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29178 AAATGAAATA
29188 TATATATATATT
1 TATATATATATT
29200 TATATATATATT
1 TATATATATATT
29212 T
1 T
29213 CATTTAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATATATT
Left flanking sequence: Indices 28688 -- 29187
TCATCATATATAATGTATTAACATCTTGATGTTAATAGGGCGCAACAAAAAATAGATATATTTGC
CGTTTTCTTTTTTGAGTTTTGGAGAGTAAAACCTGCCAGACTAGGCAGGTGCATAGACCCCTTCG
CCTTTTATTTAATCCGCAAGTTTCCTGTTTACACGGTTCTTTTAAGATCAGGCAGGTACTATGGG
TCCTCTGATTTCCAACTCAAACCATAGTGTATGGTTGGATCTCGCCGATATCACCTGTGAGCTAT
AGCGCTTGAGATGTCGTTTAGTTCTCTGTTCCCATTACTTTGGGTAATCTGCTTTCATGCGTAAA
AATATATCTATTTTTTTATTGTCCTTACTGTTCTTAGCCGCCAGCAGGCTGAAAGCATAACAGTG
TTCGTTCGTGCGATTCCCCGTGTGCATTTTTTTCGTACTAGTTCGCTGTAGGGTAGGCTGACCCG
AAAAGAACTGCGATTCTGCTTTATCATCTCATGCTAAATGAAATA
Right flanking sequence: Indices 29213 -- 29712
CATTTAGCAAGCGCCAGCGGACTCGCGGAGGATTATTGAGTAGGCCGATAAACTAGCCGACAGCC
GACGAATATCTCCTTTATCGCTGCTTTTGTGGCATGCTTCCTTTTTTTTGTCATCGGGTAAGCCC
CGAGCCCCTCGAGCAGTAGTGCCTTTGTTGTAATCACAAGTGATCTAACGGCCGCCCCTAAGAAA
GCCCCAGAAATTCTATGAAAAATAGAAAGAGTAGAAGTAAGCTGTGGCTTATAAATGGTAAGATG
AGGTGATAACGGTCGATTGATTTTCATGTTTTTAGTTGACTTTGATTTTGACTCAAGGTGACAGG
ATTTGAACCTATGACCCTCTGTACCCAAAACAGATGCGCTACCAGACTGCGCTACACCTTGGCTG
ATGTTCCCTAATGAATATTTGATAAATGCTTAAATTGTTATTGAGCAACATACAAAAGGAACTAA
AACTAATAAAAAAAACTATATTTTTAACGCCACTGAAAAAAAGCA
Found at i:41303 original size:81 final size:81
Alignment explanation
Indices: 41168--41317 Score: 257
Period size: 81 Copynumber: 1.9 Consensus size: 81
41158 AAAATACTCG
*
41168 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCATTTTCAC
1 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
41233 CAAGCGAGTATGCTCA
66 CAAGCGAGTATGCTCA
* *
41249 CTATCGGACTT-GAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCA
1 CTATCGGA-TTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCA
41313 CCAAG
65 CCAAG
41318 TGAGCTTAGA
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (81 bp):
CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
CAAGCGAGTATGCTCA
Left flanking sequence: Indices 40668 -- 41167
GGACAACTTCAATCTACTTTAATCAATCATATGGATATAAAAAAAGCGGCTAATTTAGAAATAAC
ATCAGTATTTCAACAACTTTTTGAGCTCCTTTTTTACCCATATAATTCTTTATGTTTTTGTTTGA
ACAAGCCAATTTATGCTTCACCCACTATACAAGAAAAGACGCAAGGAGGGTTACTTAGTCACCAG
AGGATAACCACTTAGTAACTTGGGCCCCCACTTTGCCAATTAAGGCCGCAGGCTTTATTAACAGA
GCTGGGGCGCGTAGTTTATAGCGAAGCTTTTTTTTTTTTAATATTTTGGGAAATCCCCCAAAAAT
ATTTTTTACTGCGAAAAGCAGCGCCCTCGAAGATTGTAAAGATTTAAGCTAATGGATGATTTGTT
TTTTTGGCGAATAACGGGATTCGAACCCGTGTTTTCAAATTCACAATCTGACACTTTCACCTATT
AAGTTATACTCGCCCTTTTTTCCAATTCAGACATTAAAATACTCG
Right flanking sequence: Indices 41318 -- 41817
TGAGCTTAGAGAAGCGAAGCGCAGAGTGGAAACACAATCTTTTTGTTTCGTTTTATTTTTGCTAT
TTTATTTTATAGACATCTTCGGCTTATTCCGGCTCGGCTGAATCTGCGGCATTTTTTCAAATATT
TGAAAAATCTATAGTCCTCTGTCTTAAGGTGTGTAGAGACTCCTTTTTTATTGATTTATACCAGT
CTATCTTAGATCCGAGATAGTGCCGAAAAAATGATTCAATTTAATCTAACCATGGTTGCCTTGGC
AATGGCAATGACTTTTATACAATATGCAGAATACTCCAAAACCTCTATTTAGAACTAAAAGAAGA
TAATGCTTTTTTATAAAAAAATCATAAAGTGCAAAGGTTAAAATTTTGAGCTTTGTTTTACGTAG
TTTTGCCATCTATATAATAGAATATAGTAAGAAATAATAAGTTGGCGAGGAAGTAAAAATATATA
TATATATATATATATATATATATATATATATATATTTTTTTTTTC
Found at i:41773 original size:2 final size:2
Alignment explanation
Indices: 41766--41807 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
41756 GGAAGTAAAA
41766 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41808 TTTTTTTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 41266 -- 41765
ATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCACCAAGTGAGCTTAGAGAA
GCGAAGCGCAGAGTGGAAACACAATCTTTTTGTTTCGTTTTATTTTTGCTATTTTATTTTATAGA
CATCTTCGGCTTATTCCGGCTCGGCTGAATCTGCGGCATTTTTTCAAATATTTGAAAAATCTATA
GTCCTCTGTCTTAAGGTGTGTAGAGACTCCTTTTTTATTGATTTATACCAGTCTATCTTAGATCC
GAGATAGTGCCGAAAAAATGATTCAATTTAATCTAACCATGGTTGCCTTGGCAATGGCAATGACT
TTTATACAATATGCAGAATACTCCAAAACCTCTATTTAGAACTAAAAGAAGATAATGCTTTTTTA
TAAAAAAATCATAAAGTGCAAAGGTTAAAATTTTGAGCTTTGTTTTACGTAGTTTTGCCATCTAT
ATAATAGAATATAGTAAGAAATAATAAGTTGGCGAGGAAGTAAAA
Right flanking sequence: Indices 41808 -- 42307
TTTTTTTTTCTTCTGTGGTCTTGCAATTGTGCTTAAAGCTAAGGGCCCCAGCCCCTTATTTCTTA
TCGTCTTCGTCAATCAAATAAAGGCTTCGTTTAGCCAGGGGTTATTCTTCTCTTCCGCTGAATTG
CTTCGCGAACAAAGTAGGCGAAAAAAAGAAAGATTTTTTTTGTCCGCCTTATTCTCTTTTATTAT
TTAAATGGCCCTATGAGCTTTTACCAAGCAAAATATTGATTGCATAAGCCATCGGCTTCTACAAA
GACCAATAAAGTGATAACAGCAGCGTAGCCAAGCTTGTTCCGCCCGCTGTGCGCAAAAAAAGAGT
TTTTTTCCGGCACTTAGTAAAACAAAATTTTGACACTCCTTGCGTTGCGGATGGTAAGTGAATTA
CTAATAAAATGGAGTGATCCAAGATGACCTCTCTTTCAATTTTAATTATGTCATTATATAGTAAT
GGCATGCGGCGAACTCTATTGGATGCGCCAAAAACTTGATTTGTT
Found at i:72136 original size:40 final size:40
Alignment explanation
Indices: 72091--72171 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
72081 CGTAAAGCGC
72091 GTCAATATATATTTTTGTTAATGTGCTTTAGTAAATCAGT
1 GTCAATATATATTTTTGTTAATGTGCTTTAGTAAATCAGT
72131 GTCAATATATATTTTTGTTAATGTGCTTTAGTAAATCAGT
1 GTCAATATATATTTTTGTTAATGTGCTTTAGTAAATCAGT
72171 G
1 G
72172 GCGGAGAGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (40 bp):
GTCAATATATATTTTTGTTAATGTGCTTTAGTAAATCAGT
Left flanking sequence: Indices 71591 -- 72090
CATATTTAGGACGACTCGATAGTGTTGAGGTTGATGAGGCTGACGAATCCGAATTACGTAGCTGC
TGAACGACAGCATTCACCAAGCCAGCGGGTAAGGACTTGGTCCTGTAATCGGTTCTTTTGGTAGG
TATAACGGAGGCCGAAGACAGAAAAAAATATATATTTGCTGCGCCCTATATATTTTCTTTTTCGG
GGGCATTCTTAGTAAGGGAATAATACTATGCGGACATCTTACCTCAACAAACAGGTAAAAAAAGT
CGAAGACGCAATCACGGGATCGACCTACTCTTTAATGAGAGGGTCAGCGGAGCCGCTATAGTAAG
TAAATAAGGAAATCGACCAAGCCAGGTACTGAAGGGCGGCAGTCATGATTCGATGGTAGAAAGTG
TAGCCCTTACCACAAATGTGGTGAAGGCGGCAACACTTTAACTCTTCTGAGGGTTGGTCATAGCA
GACAATGCTGCTACGATCTCATTCAATAAGTACCTCGTAAAGCGC
Right flanking sequence: Indices 72172 -- 72671
GCGGAGAGCTTTATGACGGAAAACTGTCACGTATGGTTCGGAGGGCGGGGAAATCTCCGACCCCT
ACTTTTGATTATGGTATGGTATTGTCAGATTTAAATGTAGGTATACTTTATCTATTTGCTATATC
TTCTTTAGGCGTTTATGGTATTATTACAGCAGGCTGGTCCAGTAATTCTAAATATGCTTTTCTAG
GAGCATTACGATCTGCAGCTCAAATGGTTTCTTATGAAGTTTCTATCGGTCTTATTATTATTACT
GTACTAATTTGTGTAGGTTCTTGTAATTTTAGTGAAATTGTAATCGCGCAAAAGCAGATATGGTT
TGCCATTCCTTTGTTTCCTGTATTTATTATGTTTTTTATTTCTTGTTTAGCAGAAACTAATCGAG
CTCCTTTTGATTTACCAGAAGCAGAAGCTGAATTAGTCGCGGGCTATAATGTAGAATATTCTTCG
ATGGGTTTTGCTCTTTTTTTTTTAGGGGAATATGCTAATATGATC
Found at i:105687 original size:11 final size:11
Alignment explanation
Indices: 105671--105729 Score: 65
Period size: 11 Copynumber: 5.7 Consensus size: 11
105661 AGTCAATTGA
105671 CAATTGCTTGT
1 CAATTGCTTGT
105682 CAATTGCTTGT
1 CAATTGCTTGT
*
105693 CAA----TTGA
1 CAATTGCTTGT
105700 CAATTGCTT-T
1 CAATTGCTTGT
105710 CCAATTGCTTGT
1 -CAATTGCTTGT
105722 CAATTGCT
1 CAATTGCT
105730 ACCAAAAGCA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 6 0.15
11 33 0.82
12 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.42
Consensus pattern (11 bp):
CAATTGCTTGT
Left flanking sequence: Indices 105171 -- 105670
AACAAAACGATGCTGCCCAGACTAAAAGCTCATGAAACTGAAAAAGTTTAAGAAGGGGCGCAGCA
ATTGTTGCGCAGCAATATAGATGTTGCCGCCTTATTCTTTGTTTACAGTAAAGAAATAACGTAAG
ATATGAAAAAAGAGGAGCCGTATGATGGGCAACTATCACGTACGGTTCTATCAGGGGGGGGAGTT
GCATGCTTCGCCCTATCCAACCTCATTCTGTTGCGCGAAATCCATCATTGGCTAAGCAATTATTT
GGTTATGCCATTTTAGGTTTCGCTTTAACAGAAGCTATTGCTTTGTTTGCCTTAATGATGGCCTT
TTTGATCTTATTTGTCTTTTAATTTTTCGGTGCTGGGATTTTTTGGGAAAACAAATAGATTTTGG
CTGCACCCCAAAAAATCACGATTTTTTGGCACCTTAGGGCCGAACGATTCGTACGTTCGAGCCCT
TCACCACTTGCTACCAAAAGCATAAGCGCAAAAGAAGTCAATTGA
Right flanking sequence: Indices 105730 -- 106198
ACCAAAAGCATAAGCCTAAAGGAAGTCAATTGACAATTGCTTGTCAATTGCTACCAAAAGCATAA
GCCTAAAAGAAGTCAACTGACATTTCAATTCAATTGCTTTACAATTGCTTTCCAATTGCTTTACA
ATTGAATTGCTTTCCAATTGCTTGTCAATTCAATTGCTTGTCAATTGCTTGTCAAATGCTTTGGG
ATCAGAGCCCACAAGGCCGCGGAGCGGCTGCCTTCGGCCCGATGGTCTGGTAATGCATTATTAAA
GATTCTTCAACATTCTTGTTAACAAAAATGGTCTTGTTAACAAAAAGCCTCCCTTCGGCCCTTCG
TTGCCTTCGGCCCTTGCTTGTCTTTATTGCATTATCATTCTTCAACCTACAATAACATTATTGTT
AACAAGACCATTATTGTTAACATTATTGTTAACATTATTGTTAAGGTTAACATTATTGTTAAGCG
GCCTCTTTCTTTGG
Found at i:105704 original size:29 final size:29
Alignment explanation
Indices: 105662--105727 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
105652 CGCAAAAGAA
105662 GTCAATTGACAATTGCTTGT-CAATTGCTT
1 GTCAATTGACAATTGCTT-TCCAATTGCTT
105691 GTCAATTGACAATTGCTTTCCAATTGCTT
1 GTCAATTGACAATTGCTTTCCAATTGCTT
105720 GTCAATTG
1 GTCAATTG
105728 CTACCAAAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 1 0.03
29 35 0.97
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (29 bp):
GTCAATTGACAATTGCTTTCCAATTGCTT
Left flanking sequence: Indices 105162 -- 105661
CATAGCGAAAACAAAACGATGCTGCCCAGACTAAAAGCTCATGAAACTGAAAAAGTTTAAGAAGG
GGCGCAGCAATTGTTGCGCAGCAATATAGATGTTGCCGCCTTATTCTTTGTTTACAGTAAAGAAA
TAACGTAAGATATGAAAAAAGAGGAGCCGTATGATGGGCAACTATCACGTACGGTTCTATCAGGG
GGGGGAGTTGCATGCTTCGCCCTATCCAACCTCATTCTGTTGCGCGAAATCCATCATTGGCTAAG
CAATTATTTGGTTATGCCATTTTAGGTTTCGCTTTAACAGAAGCTATTGCTTTGTTTGCCTTAAT
GATGGCCTTTTTGATCTTATTTGTCTTTTAATTTTTCGGTGCTGGGATTTTTTGGGAAAACAAAT
AGATTTTGGCTGCACCCCAAAAAATCACGATTTTTTGGCACCTTAGGGCCGAACGATTCGTACGT
TCGAGCCCTTCACCACTTGCTACCAAAAGCATAAGCGCAAAAGAA
Right flanking sequence: Indices 105728 -- 106198
CTACCAAAAGCATAAGCCTAAAGGAAGTCAATTGACAATTGCTTGTCAATTGCTACCAAAAGCAT
AAGCCTAAAAGAAGTCAACTGACATTTCAATTCAATTGCTTTACAATTGCTTTCCAATTGCTTTA
CAATTGAATTGCTTTCCAATTGCTTGTCAATTCAATTGCTTGTCAATTGCTTGTCAAATGCTTTG
GGATCAGAGCCCACAAGGCCGCGGAGCGGCTGCCTTCGGCCCGATGGTCTGGTAATGCATTATTA
AAGATTCTTCAACATTCTTGTTAACAAAAATGGTCTTGTTAACAAAAAGCCTCCCTTCGGCCCTT
CGTTGCCTTCGGCCCTTGCTTGTCTTTATTGCATTATCATTCTTCAACCTACAATAACATTATTG
TTAACAAGACCATTATTGTTAACATTATTGTTAACATTATTGTTAAGGTTAACATTATTGTTAAG
CGGCCTCTTTCTTTGG
Found at i:105770 original size:52 final size:52
Alignment explanation
Indices: 105711--105816 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
105701 AATTGCTTTC
* *
105711 CAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAGGAAGTCAATTGA
1 CAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGA
105763 CAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGA
1 CAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGA
105815 CA
1 CA
105817 TTTCAATTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.24
Consensus pattern (52 bp):
CAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGA
Left flanking sequence: Indices 105211 -- 105710
AAAAAGTTTAAGAAGGGGCGCAGCAATTGTTGCGCAGCAATATAGATGTTGCCGCCTTATTCTTT
GTTTACAGTAAAGAAATAACGTAAGATATGAAAAAAGAGGAGCCGTATGATGGGCAACTATCACG
TACGGTTCTATCAGGGGGGGGAGTTGCATGCTTCGCCCTATCCAACCTCATTCTGTTGCGCGAAA
TCCATCATTGGCTAAGCAATTATTTGGTTATGCCATTTTAGGTTTCGCTTTAACAGAAGCTATTG
CTTTGTTTGCCTTAATGATGGCCTTTTTGATCTTATTTGTCTTTTAATTTTTCGGTGCTGGGATT
TTTTGGGAAAACAAATAGATTTTGGCTGCACCCCAAAAAATCACGATTTTTTGGCACCTTAGGGC
CGAACGATTCGTACGTTCGAGCCCTTCACCACTTGCTACCAAAAGCATAAGCGCAAAAGAAGTCA
ATTGACAATTGCTTGTCAATTGCTTGTCAATTGACAATTGCTTTC
Right flanking sequence: Indices 105817 -- 106198
TTTCAATTCAATTGCTTTACAATTGCTTTCCAATTGCTTTACAATTGAATTGCTTTCCAATTGCT
TGTCAATTCAATTGCTTGTCAATTGCTTGTCAAATGCTTTGGGATCAGAGCCCACAAGGCCGCGG
AGCGGCTGCCTTCGGCCCGATGGTCTGGTAATGCATTATTAAAGATTCTTCAACATTCTTGTTAA
CAAAAATGGTCTTGTTAACAAAAAGCCTCCCTTCGGCCCTTCGTTGCCTTCGGCCCTTGCTTGTC
TTTATTGCATTATCATTCTTCAACCTACAATAACATTATTGTTAACAAGACCATTATTGTTAACA
TTATTGTTAACATTATTGTTAAGGTTAACATTATTGTTAAGCGGCCTCTTTCTTTGG
Found at i:105867 original size:27 final size:27
Alignment explanation
Indices: 105836--105914 Score: 117
Period size: 27 Copynumber: 2.9 Consensus size: 27
105826 AATTGCTTTA
105836 CAATTGCTTTCCAATTGCTT-TACAATT
1 CAATTGCTTTCCAATTGCTTGT-CAATT
*
105863 GAATTGCTTTCCAATTGCTTGTCAATT
1 CAATTGCTTTCCAATTGCTTGTCAATT
105890 CAATTGCTTGT-CAATTGCTTGTCAA
1 CAATTGCTT-TCCAATTGCTTGTCAA
105915 ATGCTTTGGG
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
27 46 0.96
28 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (27 bp):
CAATTGCTTTCCAATTGCTTGTCAATT
Left flanking sequence: Indices 105336 -- 105835
TCACGTACGGTTCTATCAGGGGGGGGAGTTGCATGCTTCGCCCTATCCAACCTCATTCTGTTGCG
CGAAATCCATCATTGGCTAAGCAATTATTTGGTTATGCCATTTTAGGTTTCGCTTTAACAGAAGC
TATTGCTTTGTTTGCCTTAATGATGGCCTTTTTGATCTTATTTGTCTTTTAATTTTTCGGTGCTG
GGATTTTTTGGGAAAACAAATAGATTTTGGCTGCACCCCAAAAAATCACGATTTTTTGGCACCTT
AGGGCCGAACGATTCGTACGTTCGAGCCCTTCACCACTTGCTACCAAAAGCATAAGCGCAAAAGA
AGTCAATTGACAATTGCTTGTCAATTGCTTGTCAATTGACAATTGCTTTCCAATTGCTTGTCAAT
TGCTACCAAAAGCATAAGCCTAAAGGAAGTCAATTGACAATTGCTTGTCAATTGCTACCAAAAGC
ATAAGCCTAAAAGAAGTCAACTGACATTTCAATTCAATTGCTTTA
Right flanking sequence: Indices 105915 -- 106198
ATGCTTTGGGATCAGAGCCCACAAGGCCGCGGAGCGGCTGCCTTCGGCCCGATGGTCTGGTAATG
CATTATTAAAGATTCTTCAACATTCTTGTTAACAAAAATGGTCTTGTTAACAAAAAGCCTCCCTT
CGGCCCTTCGTTGCCTTCGGCCCTTGCTTGTCTTTATTGCATTATCATTCTTCAACCTACAATAA
CATTATTGTTAACAAGACCATTATTGTTAACATTATTGTTAACATTATTGTTAAGGTTAACATTA
TTGTTAAGCGGCCTCTTTCTTTGG
Found at i:105869 original size:16 final size:16
Alignment explanation
Indices: 105848--105879 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
105838 ATTGCTTTCC
105848 AATTGCTTTACAATTG
1 AATTGCTTTACAATTG
*
105864 AATTGCTTTCCAATTG
1 AATTGCTTTACAATTG
105880 CTTGTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (16 bp):
AATTGCTTTACAATTG
Left flanking sequence: Indices 105348 -- 105847
CTATCAGGGGGGGGAGTTGCATGCTTCGCCCTATCCAACCTCATTCTGTTGCGCGAAATCCATCA
TTGGCTAAGCAATTATTTGGTTATGCCATTTTAGGTTTCGCTTTAACAGAAGCTATTGCTTTGTT
TGCCTTAATGATGGCCTTTTTGATCTTATTTGTCTTTTAATTTTTCGGTGCTGGGATTTTTTGGG
AAAACAAATAGATTTTGGCTGCACCCCAAAAAATCACGATTTTTTGGCACCTTAGGGCCGAACGA
TTCGTACGTTCGAGCCCTTCACCACTTGCTACCAAAAGCATAAGCGCAAAAGAAGTCAATTGACA
ATTGCTTGTCAATTGCTTGTCAATTGACAATTGCTTTCCAATTGCTTGTCAATTGCTACCAAAAG
CATAAGCCTAAAGGAAGTCAATTGACAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAA
GAAGTCAACTGACATTTCAATTCAATTGCTTTACAATTGCTTTCC
Right flanking sequence: Indices 105880 -- 106198
CTTGTCAATTCAATTGCTTGTCAATTGCTTGTCAAATGCTTTGGGATCAGAGCCCACAAGGCCGC
GGAGCGGCTGCCTTCGGCCCGATGGTCTGGTAATGCATTATTAAAGATTCTTCAACATTCTTGTT
AACAAAAATGGTCTTGTTAACAAAAAGCCTCCCTTCGGCCCTTCGTTGCCTTCGGCCCTTGCTTG
TCTTTATTGCATTATCATTCTTCAACCTACAATAACATTATTGTTAACAAGACCATTATTGTTAA
CATTATTGTTAACATTATTGTTAAGGTTAACATTATTGTTAAGCGGCCTCTTTCTTTGG
Found at i:105882 original size:11 final size:11
Alignment explanation
Indices: 105825--105863 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
105815 CATTTCAATT
105825 CAATTGCTTTA
1 CAATTGCTTTA
*
105836 CAATTGCTTTC
1 CAATTGCTTTA
105847 CAATTGCTTTA
1 CAATTGCTTTA
105858 CAATTG
1 CAATTG
105864 AATTGCTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.44
Consensus pattern (11 bp):
CAATTGCTTTA
Left flanking sequence: Indices 105325 -- 105824
ATGGGCAACTATCACGTACGGTTCTATCAGGGGGGGGAGTTGCATGCTTCGCCCTATCCAACCTC
ATTCTGTTGCGCGAAATCCATCATTGGCTAAGCAATTATTTGGTTATGCCATTTTAGGTTTCGCT
TTAACAGAAGCTATTGCTTTGTTTGCCTTAATGATGGCCTTTTTGATCTTATTTGTCTTTTAATT
TTTCGGTGCTGGGATTTTTTGGGAAAACAAATAGATTTTGGCTGCACCCCAAAAAATCACGATTT
TTTGGCACCTTAGGGCCGAACGATTCGTACGTTCGAGCCCTTCACCACTTGCTACCAAAAGCATA
AGCGCAAAAGAAGTCAATTGACAATTGCTTGTCAATTGCTTGTCAATTGACAATTGCTTTCCAAT
TGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAGGAAGTCAATTGACAATTGCTTGTCAATTG
CTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGACATTTCAATT
Right flanking sequence: Indices 105864 -- 106198
AATTGCTTTCCAATTGCTTGTCAATTCAATTGCTTGTCAATTGCTTGTCAAATGCTTTGGGATCA
GAGCCCACAAGGCCGCGGAGCGGCTGCCTTCGGCCCGATGGTCTGGTAATGCATTATTAAAGATT
CTTCAACATTCTTGTTAACAAAAATGGTCTTGTTAACAAAAAGCCTCCCTTCGGCCCTTCGTTGC
CTTCGGCCCTTGCTTGTCTTTATTGCATTATCATTCTTCAACCTACAATAACATTATTGTTAACA
AGACCATTATTGTTAACATTATTGTTAACATTATTGTTAAGGTTAACATTATTGTTAAGCGGCCT
CTTTCTTTGG
Found at i:105888 original size:11 final size:11
Alignment explanation
Indices: 105889--105920 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
105879 GCTTGTCAAT
105889 TCAATTGCTTG
1 TCAATTGCTTG
105900 TCAATTGCTTG
1 TCAATTGCTTG
*
105911 TCAAATGCTT
1 TCAATTGCTT
105921 TGGGATCAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.44
Consensus pattern (11 bp):
TCAATTGCTTG
Left flanking sequence: Indices 105389 -- 105888
CATTCTGTTGCGCGAAATCCATCATTGGCTAAGCAATTATTTGGTTATGCCATTTTAGGTTTCGC
TTTAACAGAAGCTATTGCTTTGTTTGCCTTAATGATGGCCTTTTTGATCTTATTTGTCTTTTAAT
TTTTCGGTGCTGGGATTTTTTGGGAAAACAAATAGATTTTGGCTGCACCCCAAAAAATCACGATT
TTTTGGCACCTTAGGGCCGAACGATTCGTACGTTCGAGCCCTTCACCACTTGCTACCAAAAGCAT
AAGCGCAAAAGAAGTCAATTGACAATTGCTTGTCAATTGCTTGTCAATTGACAATTGCTTTCCAA
TTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAGGAAGTCAATTGACAATTGCTTGTCAATT
GCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGACATTTCAATTCAATTGCTTTACAATTGCT
TTCCAATTGCTTTACAATTGAATTGCTTTCCAATTGCTTGTCAAT
Right flanking sequence: Indices 105921 -- 106198
TGGGATCAGAGCCCACAAGGCCGCGGAGCGGCTGCCTTCGGCCCGATGGTCTGGTAATGCATTAT
TAAAGATTCTTCAACATTCTTGTTAACAAAAATGGTCTTGTTAACAAAAAGCCTCCCTTCGGCCC
TTCGTTGCCTTCGGCCCTTGCTTGTCTTTATTGCATTATCATTCTTCAACCTACAATAACATTAT
TGTTAACAAGACCATTATTGTTAACATTATTGTTAACATTATTGTTAAGGTTAACATTATTGTTA
AGCGGCCTCTTTCTTTGG
Found at i:105893 original size:16 final size:16
Alignment explanation
Indices: 105874--105905 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
105864 AATTGCTTTC
105874 CAATTGCTTGTCAATT
1 CAATTGCTTGTCAATT
105890 CAATTGCTTGTCAATT
1 CAATTGCTTGTCAATT
105906 GCTTGTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (16 bp):
CAATTGCTTGTCAATT
Left flanking sequence: Indices 105374 -- 105873
CGCCCTATCCAACCTCATTCTGTTGCGCGAAATCCATCATTGGCTAAGCAATTATTTGGTTATGC
CATTTTAGGTTTCGCTTTAACAGAAGCTATTGCTTTGTTTGCCTTAATGATGGCCTTTTTGATCT
TATTTGTCTTTTAATTTTTCGGTGCTGGGATTTTTTGGGAAAACAAATAGATTTTGGCTGCACCC
CAAAAAATCACGATTTTTTGGCACCTTAGGGCCGAACGATTCGTACGTTCGAGCCCTTCACCACT
TGCTACCAAAAGCATAAGCGCAAAAGAAGTCAATTGACAATTGCTTGTCAATTGCTTGTCAATTG
ACAATTGCTTTCCAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAGGAAGTCAATTGAC
AATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGACATTTCAATTCAAT
TGCTTTACAATTGCTTTCCAATTGCTTTACAATTGAATTGCTTTC
Right flanking sequence: Indices 105906 -- 106198
GCTTGTCAAATGCTTTGGGATCAGAGCCCACAAGGCCGCGGAGCGGCTGCCTTCGGCCCGATGGT
CTGGTAATGCATTATTAAAGATTCTTCAACATTCTTGTTAACAAAAATGGTCTTGTTAACAAAAA
GCCTCCCTTCGGCCCTTCGTTGCCTTCGGCCCTTGCTTGTCTTTATTGCATTATCATTCTTCAAC
CTACAATAACATTATTGTTAACAAGACCATTATTGTTAACATTATTGTTAACATTATTGTTAAGG
TTAACATTATTGTTAAGCGGCCTCTTTCTTTGG
Found at i:106170 original size:18 final size:18
Alignment explanation
Indices: 106147--106182 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
106137 TAACATTATT
106147 GTTAACATTATTGTTAAG
1 GTTAACATTATTGTTAAG
106165 GTTAACATTATTGTTAAG
1 GTTAACATTATTGTTAAG
106183 CGGCCTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (18 bp):
GTTAACATTATTGTTAAG
Left flanking sequence: Indices 105647 -- 106146
ATAAGCGCAAAAGAAGTCAATTGACAATTGCTTGTCAATTGCTTGTCAATTGACAATTGCTTTCC
AATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAGGAAGTCAATTGACAATTGCTTGTCAA
TTGCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGACATTTCAATTCAATTGCTTTACAATTG
CTTTCCAATTGCTTTACAATTGAATTGCTTTCCAATTGCTTGTCAATTCAATTGCTTGTCAATTG
CTTGTCAAATGCTTTGGGATCAGAGCCCACAAGGCCGCGGAGCGGCTGCCTTCGGCCCGATGGTC
TGGTAATGCATTATTAAAGATTCTTCAACATTCTTGTTAACAAAAATGGTCTTGTTAACAAAAAG
CCTCCCTTCGGCCCTTCGTTGCCTTCGGCCCTTGCTTGTCTTTATTGCATTATCATTCTTCAACC
TACAATAACATTATTGTTAACAAGACCATTATTGTTAACATTATT
Right flanking sequence: Indices 106183 -- 106198
CGGCCTCTTTCTTTGG
Found at i:106181 original size:12 final size:12
Alignment explanation
Indices: 106128--106163 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
106118 TTAACAAGAC
106128 CATTATTGTTAA
1 CATTATTGTTAA
106140 CATTATTGTTAA
1 CATTATTGTTAA
106152 CATTATTGTTAA
1 CATTATTGTTAA
106164 GGTTAACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (12 bp):
CATTATTGTTAA
Left flanking sequence: Indices 105628 -- 106127
ACCACTTGCTACCAAAAGCATAAGCGCAAAAGAAGTCAATTGACAATTGCTTGTCAATTGCTTGT
CAATTGACAATTGCTTTCCAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAGGAAGTCA
ATTGACAATTGCTTGTCAATTGCTACCAAAAGCATAAGCCTAAAAGAAGTCAACTGACATTTCAA
TTCAATTGCTTTACAATTGCTTTCCAATTGCTTTACAATTGAATTGCTTTCCAATTGCTTGTCAA
TTCAATTGCTTGTCAATTGCTTGTCAAATGCTTTGGGATCAGAGCCCACAAGGCCGCGGAGCGGC
TGCCTTCGGCCCGATGGTCTGGTAATGCATTATTAAAGATTCTTCAACATTCTTGTTAACAAAAA
TGGTCTTGTTAACAAAAAGCCTCCCTTCGGCCCTTCGTTGCCTTCGGCCCTTGCTTGTCTTTATT
GCATTATCATTCTTCAACCTACAATAACATTATTGTTAACAAGAC
Right flanking sequence: Indices 106164 -- 106198
GGTTAACATTATTGTTAAGCGGCCTCTTTCTTTGG
Done.