Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KC784956
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 115146
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Found at i:1697 original size:10 final size:10
Alignment explanation
Indices: 1676--1704 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1666 AATATTGTAC
1676 ATAATA-ATA
1 ATAATACATA
1685 ATAATACATA
1 ATAATACATA
1695 ATAATACATA
1 ATAATACATA
1705 TCGAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAATACATA
Left flanking sequence: Indices 1176 -- 1675
AGCAGAAAAAAATATTTTTTGTTGCGCCCTATGTCTTCATGGCTTCAGAGAGCTGACGCCCTTTT
ATATATTTTTTTTATTTTTTTCTATTCCCGTGAAAGAAGGCCGCAGGCCTCTAAGCTGGCGATAG
TTCAAAATGCCTTATTGCAAGGAAGACCTCATAAAAAGGGCCTTTGGTACGAAAAGGGAAAAGTT
AAGTAGGCGTCACCAACTTTATCATATCATATAAAGGGGCGTAGCCCTATTACTTTTGTGAGAAA
TGCCATGTTTCTGTTCGTTGGCAGTGTTCGTCGGCACTTTTCCGTCTTTGCTGTTCAGTCCAAAG
TCGGTGTGAGTGCCTTCTACACTCGTTTTTGTGCTCCTGGGAAAGTGTGCCTTTCTTTGGCCTGC
GAGAGAAAGCTGCGCCTTCGGCGCAGCGAAAAGGTAAGAATAAAAAAGGAAATGAATATTCTGTA
CTAGCGATAGCATAAATACTATTTACAAAACTAACAATATTGTAC
Right flanking sequence: Indices 1705 -- 2204
TCGAAAATATTCCTTTACTTCGGTTCATCAGGAGTCCACGTTAATCCCCAGTCCGAAGGCGGATT
CCCATTATTTTAAAGTTCCGACAGGAATTGCTCTACGCCACCGTCTTAATTAATTTTAATTAATT
TTAATTAATAGGTGGCCTTCTTACTTTTATTGATTATCGCCAAGCTGCGCCCGACCGTCCGTATA
GGACACGGCCAAAGCCCAACAAAGAGAGAGAGCTAAAGCCCTGCCTACAGAGAGCGCCTGCTAAA
GCCCTTTGGCTCTACAGAGAGCCTTCGGCCTGCGGCCATTAATATTTTTGTGGAGGAGTATTAGT
GAGGGCCGCAGGCGCTACTGTATACAGTCCACTCGCTGCAATTGTTCAGCCTTCGTCGCCGGCCA
AATATATTTGTCTTTATAAATATATTTGTTTTTATTTGATGATATTTGTTTTATTTGATGATATA
TATATGATTGGCAGTTATTTTGGCTATTCCGGGTAGTAATTCTTC
Found at i:1830 original size:10 final size:10
Alignment explanation
Indices: 1815--1843 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
1805 CGCCACCGTC
1815 TTAATTAATT
1 TTAATTAATT
1825 TTAATTAATT
1 TTAATTAATT
1835 TTAATTAAT
1 TTAATTAAT
1844 AGGTGGCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTAATTAATT
Left flanking sequence: Indices 1315 -- 1814
CCTTATTGCAAGGAAGACCTCATAAAAAGGGCCTTTGGTACGAAAAGGGAAAAGTTAAGTAGGCG
TCACCAACTTTATCATATCATATAAAGGGGCGTAGCCCTATTACTTTTGTGAGAAATGCCATGTT
TCTGTTCGTTGGCAGTGTTCGTCGGCACTTTTCCGTCTTTGCTGTTCAGTCCAAAGTCGGTGTGA
GTGCCTTCTACACTCGTTTTTGTGCTCCTGGGAAAGTGTGCCTTTCTTTGGCCTGCGAGAGAAAG
CTGCGCCTTCGGCGCAGCGAAAAGGTAAGAATAAAAAAGGAAATGAATATTCTGTACTAGCGATA
GCATAAATACTATTTACAAAACTAACAATATTGTACATAATAATAATAATACATAATAATACATA
TCGAAAATATTCCTTTACTTCGGTTCATCAGGAGTCCACGTTAATCCCCAGTCCGAAGGCGGATT
CCCATTATTTTAAAGTTCCGACAGGAATTGCTCTACGCCACCGTC
Right flanking sequence: Indices 1844 -- 2343
AGGTGGCCTTCTTACTTTTATTGATTATCGCCAAGCTGCGCCCGACCGTCCGTATAGGACACGGC
CAAAGCCCAACAAAGAGAGAGAGCTAAAGCCCTGCCTACAGAGAGCGCCTGCTAAAGCCCTTTGG
CTCTACAGAGAGCCTTCGGCCTGCGGCCATTAATATTTTTGTGGAGGAGTATTAGTGAGGGCCGC
AGGCGCTACTGTATACAGTCCACTCGCTGCAATTGTTCAGCCTTCGTCGCCGGCCAAATATATTT
GTCTTTATAAATATATTTGTTTTTATTTGATGATATTTGTTTTATTTGATGATATATATATGATT
GGCAGTTATTTTGGCTATTCCGGGTAGTAATTCTTCCCCGTTTGCACAGGAACAAGAAATAAAGA
AACAAGAAATAGATTTATTTTATTAGGCTTGGCAAATTGTAATTAATTGATAAATTGATTACATC
AAATTTTTCATGACCTAAAAAAACTAATTAGGTTATGATTAGTTT
Found at i:2117 original size:18 final size:18
Alignment explanation
Indices: 2094--2129 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2084 GTCGCCGGCC
2094 AAATATATTTGTCTTTAT
1 AAATATATTTGTCTTTAT
*
2112 AAATATATTTGTTTTTAT
1 AAATATATTTGTCTTTAT
2130 TTGATGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (18 bp):
AAATATATTTGTCTTTAT
Left flanking sequence: Indices 1594 -- 2093
AAAAGGTAAGAATAAAAAAGGAAATGAATATTCTGTACTAGCGATAGCATAAATACTATTTACAA
AACTAACAATATTGTACATAATAATAATAATACATAATAATACATATCGAAAATATTCCTTTACT
TCGGTTCATCAGGAGTCCACGTTAATCCCCAGTCCGAAGGCGGATTCCCATTATTTTAAAGTTCC
GACAGGAATTGCTCTACGCCACCGTCTTAATTAATTTTAATTAATTTTAATTAATAGGTGGCCTT
CTTACTTTTATTGATTATCGCCAAGCTGCGCCCGACCGTCCGTATAGGACACGGCCAAAGCCCAA
CAAAGAGAGAGAGCTAAAGCCCTGCCTACAGAGAGCGCCTGCTAAAGCCCTTTGGCTCTACAGAG
AGCCTTCGGCCTGCGGCCATTAATATTTTTGTGGAGGAGTATTAGTGAGGGCCGCAGGCGCTACT
GTATACAGTCCACTCGCTGCAATTGTTCAGCCTTCGTCGCCGGCC
Right flanking sequence: Indices 2130 -- 2629
TTGATGATATTTGTTTTATTTGATGATATATATATGATTGGCAGTTATTTTGGCTATTCCGGGTA
GTAATTCTTCCCCGTTTGCACAGGAACAAGAAATAAAGAAACAAGAAATAGATTTATTTTATTAG
GCTTGGCAAATTGTAATTAATTGATAAATTGATTACATCAAATTTTTCATGACCTAAAAAAACTA
ATTAGGTTATGATTAGTTTTTTTATACTTTGTTGAAGCTGACGCCCTTTGCCATGACCTTTCGGG
GGCGAGGCGGGGCTCCGCCCCCCCAATGGACTAGGTCCTTAGAGGGCAGAGCGGGTAAGTGCTTA
AGTGGCACCATCTGCTAAGACGTCTAAATGCTTTCCTTTATAGCCGGAAGTTCTGAGAAGGTATG
AAATGCTGGAGGGCTTTTGACCATCCATTCAAGTGTCGTTGAATTCTGTTCAACAGCCCAAGGAC
TTGGAGCACACTTGTTTTCACTGGTTAACGTAAAAAAAACCACTA
Found at i:2148 original size:19 final size:20
Alignment explanation
Indices: 2116--2158 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
2106 CTTTATAAAT
2116 ATATTTGTTTTTATTTGATG
1 ATATTTGTTTTTATTTGATG
2136 ATATTTG-TTTTATTTGATG
1 ATATTTGTTTTTATTTGATG
2155 ATAT
1 ATAT
2159 ATATATGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.23, C:0.00, G:0.14, T:0.63
Consensus pattern (20 bp):
ATATTTGTTTTTATTTGATG
Left flanking sequence: Indices 1616 -- 2115
AATGAATATTCTGTACTAGCGATAGCATAAATACTATTTACAAAACTAACAATATTGTACATAAT
AATAATAATACATAATAATACATATCGAAAATATTCCTTTACTTCGGTTCATCAGGAGTCCACGT
TAATCCCCAGTCCGAAGGCGGATTCCCATTATTTTAAAGTTCCGACAGGAATTGCTCTACGCCAC
CGTCTTAATTAATTTTAATTAATTTTAATTAATAGGTGGCCTTCTTACTTTTATTGATTATCGCC
AAGCTGCGCCCGACCGTCCGTATAGGACACGGCCAAAGCCCAACAAAGAGAGAGAGCTAAAGCCC
TGCCTACAGAGAGCGCCTGCTAAAGCCCTTTGGCTCTACAGAGAGCCTTCGGCCTGCGGCCATTA
ATATTTTTGTGGAGGAGTATTAGTGAGGGCCGCAGGCGCTACTGTATACAGTCCACTCGCTGCAA
TTGTTCAGCCTTCGTCGCCGGCCAAATATATTTGTCTTTATAAAT
Right flanking sequence: Indices 2159 -- 2658
ATATATGATTGGCAGTTATTTTGGCTATTCCGGGTAGTAATTCTTCCCCGTTTGCACAGGAACAA
GAAATAAAGAAACAAGAAATAGATTTATTTTATTAGGCTTGGCAAATTGTAATTAATTGATAAAT
TGATTACATCAAATTTTTCATGACCTAAAAAAACTAATTAGGTTATGATTAGTTTTTTTATACTT
TGTTGAAGCTGACGCCCTTTGCCATGACCTTTCGGGGGCGAGGCGGGGCTCCGCCCCCCCAATGG
ACTAGGTCCTTAGAGGGCAGAGCGGGTAAGTGCTTAAGTGGCACCATCTGCTAAGACGTCTAAAT
GCTTTCCTTTATAGCCGGAAGTTCTGAGAAGGTATGAAATGCTGGAGGGCTTTTGACCATCCATT
CAAGTGTCGTTGAATTCTGTTCAACAGCCCAAGGACTTGGAGCACACTTGTTTTCACTGGTTAAC
GTAAAAAAAACCACTACAAAGAAACAAAAAATTCCTATTACAGAA
Found at i:21022 original size:19 final size:20
Alignment explanation
Indices: 20980--21022 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
20970 GGATGTTGAT
* *
20980 CATGACTTTCGAAAAGTTCC
1 CATGACTATCGAAAAGTTCA
*
21000 CATGACTAT-GAAAATTTCA
1 CATGACTATCGAAAAGTTCA
21019 CATG
1 CATG
21023 GAGGAGTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
CATGACTATCGAAAAGTTCA
Left flanking sequence: Indices 20480 -- 20979
ATTCTCTTATTTTCAAATTTCTGGGAGACTTGTCATATTTAGAATCTTTTTGTGGTGTGCTTTGT
TTTTTATTATTTTGTACATTCTCCTTATCATTCAAATATAGGCGCGATACATTGGCGAACAAAGG
GCGTAGGCCTAGAATGAAAAGGATGAAAGCGCGTAAGCGGGCACAGAGAAGAAAGCGCTTGGCGC
TTTCTTGGCCTAACGAAAAGGAGGAACGAAAAAATGAAAAGAGAGAAAAGTTTTACTTTTTATTT
TTCTCAAATAAATCAAAAATATTTTTGATTTATTTGCTGCAATTTTCAAAAACCTTCGGCCTCAA
CGAAAAAGCCAAAATTTTGGCTTTTTATTCTCTGCTCGCTCTTTCGCAAGCTGATTCTTCTGTCC
CTGAAGAAAATAAAGCGCTGGGCGCTTTCTTGGAAGAAAGCGCCCAGCGCTTTGATTGGAATAGA
TTTTTTATTGTTCGCGCCTTACCAAAAAGACTGATGGATGTTGAT
Right flanking sequence: Indices 21023 -- 21522
GAGGAGTTTGCATTTTTATTATGGGTGTTATTCTGTCGTGCGACCCGGCGGCTTATGTGCGACTA
TCATCGTTTTTAAGCCCACGCCATGTAGGCGTGAACTCTGGTTGAATTCGGGTTCTAAATCCCGC
CGCTGAAATGCTCAGTCGACTCTTGAACCTTGATAGGAAGACGGCTTCTTCCCAAATTCGTGCGA
AAGGTTCAAGGACTTAGGATGAACTAATGTGAATGGGTATAAGCTTCGTTGCTCAAAAACACCTA
GTACTGACCACACTGAGAGACTTGCCAATGGCAAGAAAGGCCGCGGGTAACGCTAGTTGACGAAG
TGGCGTTAAGCATTCCCAGCGATACGGAAAGAGAGGTCGTGATGATATCATCTACGTTCGTACTG
CTCCTCGTGGAGTAAATCTCACATCCAACAATCTAACCAGGGAACGGGATAATTCTCACTAAGTT
CCACTAAAACTGGCAGGCCAGCCGGGCCGTAAGCTAGTGGGAACA
Found at i:24741 original size:17 final size:17
Alignment explanation
Indices: 24719--24753 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
24709 ACAAACAAGC
24719 AATTTGGATGGAGAGCA
1 AATTTGGATGGAGAGCA
24736 AATTTGGATGGAGAGCA
1 AATTTGGATGGAGAGCA
24753 A
1 A
24754 CTCTACTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.34, T:0.23
Consensus pattern (17 bp):
AATTTGGATGGAGAGCA
Left flanking sequence: Indices 24219 -- 24718
TATCTTTCTGCCGCGCTGAAATAGGGCGAAGCATTGTATTTGAGTCCTTGCTCTTACGCAATGAA
CCACCAGTGCCGGTAGTTTCTTTTGTATGTGATTTGATTGGCATACTGGCGAATTTATTATGTTA
TTTCTTATTGTTGTCCTTGTTATATTATATTGTGGTTGGGTGCGTGATGATATTTTGTTTTTTTA
CAAAAACACGCAAATTTTTGATTTACCCAATACTATACAGATTGTGACGTCTATATATTTCGGTC
CAGTGCACGGTGGAATTGGCCTGAACTATATATATGTTGGATTTTATGTTTTAACGCCTTATATC
GACCCAATATTGCAGAGTCTATGGTCGACTCCGCTCAAATGCATTTATTTCTAATCCTCTTCTTT
CGGAACAATAGAGTAACTAAACAACAAAAAAGGTGCTTTCTTTCTTTACTCGTTTGTTGCCAACC
CTACCAATTAAACTGACTAACAGTTTTTTAAATAAACAAACAAGC
Right flanking sequence: Indices 24754 -- 25253
CTCTACTCTCTCTGTTTTCCAAGTCGAGAAGTCCCAAATAATCTTATTGGCGCTTTCTTCATGAT
ACCTCTATTATTTATGCCTATCCATTTGAGCTGCGCCCTTAGGTTGCCAGTGGCCTGCGACCTGG
CACAGACTGTCGATGCATACTATTAGCTAAGGACGAAGCTGGCGCCTTTGTCTGCTCGCTCAGTG
GCGCGTTTTGCCGCATGGCTCAGTGTTGCGCCTTGAGCTAAGCCACGCCACAGGGCGACGACTAA
TGCGTTGCCCTGCTGGGGCTCAAGCTCTTCAGGCTACTGCCTTATTTCTCAGCTACCAAACACAG
AGCCAAAAGCTGAAGACTATGACTTTTTGTCGAATGAATCATCATAAATAATGATTATATATTTT
TTTTTATAAAGCAAATATCTTGTTTTTGCCTACACTGTTTTGATTCTGCAAAATGATTACACAAC
GTTAAGATCTGTAAAGGTTACATGCTTCAACCAACAAAATAAAAA
Found at i:47442 original size:81 final size:81
Alignment explanation
Indices: 47307--47456 Score: 266
Period size: 81 Copynumber: 1.9 Consensus size: 81
47297 AAGATACTCG
*
47307 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGTCGTGTTTACCATTTTCAC
1 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGTCGTGTTTACCATTTTCAC
47372 CAAGCGAGTATGCTCA
66 CAAGCGAGTATGCTCA
*
47388 CTATCGGACTT-GAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCA
1 CTATCGGA-TTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGTCGTGTTTACCATTTTCA
47452 CCAAG
65 CCAAG
47457 TGAGCTTAGG
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
81 64 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (81 bp):
CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGTCGTGTTTACCATTTTCAC
CAAGCGAGTATGCTCA
Left flanking sequence: Indices 46807 -- 47306
CTAATTTAGAAACAACATCAGTATTTCAACAACTTTTTGAGCTCATTTTTTACCCATATACTTCT
CTATGTTCTTGTTCGGACCAGCTAATACGAGCAGAGTGATCCATCAGCCATTTTTGCTGATGATA
TCCAAGTGTGGGCGCAATGTCTAACGTCCCTTTTATGCTCAATCCACTATACAAGAAGAAAGGGA
AGGATCCAATGGGGTGACGTCACCACCAGAGGCTAACTACCCAGTAACGCCCCACTTTGCCAATC
AAGGCCGCAGGCTTGATTGACAGAGCTGGGGCACGTAGTTTATAGCGAAACTTTTTTTTTAAAAT
ATTTTTTGCTGCGAAAAGCAGCGCCCTCAAAGATTGTAAAGATTTAAGCTAATGGATGATCTGTT
TTTTTGGCGAATAACGGGATTCGAACCCGTGTTTTCAAATTCACAATCTGACACTTTCACCTATT
AAGTTATACTCGCCCTTCTTTTCAATTTAGACATTAAGATACTCG
Right flanking sequence: Indices 47457 -- 47956
TGAGCTTAGGAAAGCGAAGCGCAGAGTGGAAACACAATCTTTCTGTGTCGTTTTCTTTTCACCAT
TTCATTTTATAGACACCCCCGGCTTATTCCGGCTCGGCCGGACCTGCGGCATTTTTTCAAATATT
TGAAAAAATCTATATTTTGCTGCGCCCTCTGTCTTGAGGTGTGTAGAGACCCCTTCTTTATTGAT
TTATACTAGTCTATCTTAAATCTGAGATAGTGCCGAAAAAATGACTCAATTTAATCTAACCATAG
TCACAAAAACCTTGGCAATGGCAATGACTTTTGTATGACAGGCAGAATACTCCAATAAAAAAGTA
AGCCTCTATTGACTTTATTCAGAACTAAAAGAAGAGAATGCTTCTTTTCGTTGAGGGCTAGAAAA
AAGCAATAAAGTGCAAAGGTTGGAATAAAAAATTTTTGAGCTTTGTTCTACGTAGTTTTGCCATC
TATTTAATATAATATAGTAAGAGATAATAAGTTGGCGAAGAAGTA
Found at i:63301 original size:1 final size:1
Alignment explanation
Indices: 63295--63328 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
63285 ATCAGGCAGT
63295 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
63329 AGTACCTGCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 62795 -- 63294
CTTCCCAAAAGATGGGGATTGCACGTAAAAAAAGGGATGATCTTCATAAACTTGCTCAAGCCAAT
CGTAGTTTTTCGCATTATAGATGGTGGTAAACTATTTAGAGTGTAAGGAAAAGGATCAGGCGACG
GGGTAGGCGAAGCGCAGAAAATTATAAATAATGCGCTTCGCCTCCTTGTGCCCCACTTGGCTATT
CAAAGGCCCCTGATTTCATGGCCTTTATCATAATTAAACTATTCGTCTTTTCTGAGATTCAGACA
TTAAGCGTCCCAGCTGAAGGCAAGCCTGCTTTTTCTCCCGGGCCGGACAAAGTAAAGGTTGCGAG
AGAGTGGGCGCAGCAAATATATATTTTTTTTGTTTGGCGTTTCATTTTATTAAAAATTTGACTAG
AAAGTTAGTCATATTCGCGTAGTTTTGTTTTGTGTACTTCGCAGATAGCGCATGAGTATCAGCAC
ACCTCCTATGAATGGGGCGACCGGAGGCGGCTTTTATCAGGCAGT
Right flanking sequence: Indices 63329 -- 63828
AGTACCTGCGGCCTATTTGTCTCAGTAGGAATTAGTCCCCGAGGTCCCGGGACATTGGCTTCCGC
CAAGAGGGAACTCTACAAGGCCGCAGGGCGCAGCAAAAAATATATATATATATAATATTTTTTTT
TCATAGCTCTTCGCATCCCGCGCGTCTAAAGGTCTACGACCATTGGTGTGCATTGTTTTGCGTTC
GTCATCCCAGCTCTTTTATTATGGTTGATGATGACGCGCTTAAGAAGTAAGGAAGTGATGTAGCA
ATTGTTTTGATGCTTTCTACACCAGTCTTTTAATGAAGGTTTATAGCATCATTTAAGTAAATACA
AATTAAAATAGTAAAAACATAAGCTTGTAATATGGCAACGCCTAATTCCAAACCAGTTAATGCGA
ATACTATCAAAAAAGGAGCAAAATGTGCTAAATACATAATACCCCCCATAGATAGCATAGTCCAA
GCAAACCCGCTTAAAATCTTGACTAAACTATGACCAGCCATCATA
Found at i:95407 original size:15 final size:15
Alignment explanation
Indices: 95387--95442 Score: 84
Period size: 15 Copynumber: 4.0 Consensus size: 15
95377 TAGGGTACAA
95387 TCTGAATTCTAAGAT
1 TCTGAATTCTAAGAT
95402 TCTGAATTCTAAGAT
1 TCTGAATTCTAAGAT
95417 TCTG----CTAAGAT
1 TCTGAATTCTAAGAT
95428 TCTGAATTCTAAGAT
1 TCTGAATTCTAAGAT
95443 GGTCATAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
11 11 0.30
15 26 0.70
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (15 bp):
TCTGAATTCTAAGAT
Left flanking sequence: Indices 94887 -- 95386
AAAAGATAAATTTAGGTAATATGCAATAAAATAAAGCATCAAGCAATTGGTAAAAAGCGAACACC
CTGTAAAAATAAACTAATCATGATGTGCTCTTTTCCAGTTGATTATTCGGCACATTAGGGTAATT
AGCTCAGTTGGTAGAGCGCCTCGTTTACACCGAGAAAGTCAGCGGTTCAAGTCCGTTATTACCTA
AGGGTTTCCATTATCTGTAATTATGAATTGAATCTAGCGTATGGATAAATTTACTAATTTTATCA
ATGGTGGTAGAACTGCAATAATTAAAAAAAGGGGGCTTTTGGACAAAAAGCAAGCCCGCTTGATT
CGCATGGCAAATGAGAGCTAATTATTCTGAAAAAGAATAACACGGTTAAAGGAAACATAAGAAAG
TGGCGAACGCAAAGCAAAAAAAGCGATAATATATATTATCGCTTTTTTTGCTTCGCGTTTGGGCC
AACTAAAGCAGAAAACGCATGGCGTTTTCGTAGTTTAGGGTACAA
Right flanking sequence: Indices 95443 -- 95942
GGTCATAAGACAAAAAATATATATATTTTTGGACGTTTTTCTAATTGAAAAGTGCCCCGGTTCCA
TGCAAAAAGCAGGGCTCCACTAGCATAGCGTAGAGGCCGAAGGGCTTCGCCCAAAAACCGATCTA
GACTTGTTGCATGCTTTGGGGCCATTACGCAGTAATGGCCCCAAAGCATGCAAAGCCACAGGTCA
ACTAACCTTCTTCCTGCCAAGTGCCTTCCAGTGCGAAGCAGAGAGCCGCGCGCCCTGACTGCGCG
CGGCTGCTGGCGATATTAGCCTCGTGGCTTCAGGTTACTTTCTTTTCCCTGAAAGCTTGAACGAG
GCTTTCGGAGAAAATAGAGTTTTCACTTTCGGATTTCTACTGACGTAGCCAGTAGAATGGAAAAA
TCCCGATGAATCATCGTAGATGATTCATTATGTTTGGGAAAATAGCTTAGTTGGTTAGAGTGCTG
GTCTGTCACGCCAGAAGTCGCGGGTTCAAATCCCGTTTTTCCCGG
Done.