Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058643
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 312609
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:15594 original size:24 final size:24
Alignment explanation
Indices: 15549--15594 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15539 AAAAATAAAC
* *
15549 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
15573 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
15595 AGAATACCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 15049 -- 15548
AACAAAAGATGTGCTCCAAGTCCTTGGGATGTTGAACAGAATCCAACCACACCGGAATGGATGGT
ACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTATCAAGGAGACGAAAAGCTCTG
TGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTAACAGAACTTTTCAAAATTGAA
AACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAACGAATTCTTCAAATTTTAGGC
GGGATGGGGATTGTAATTTTTTATACTTCTCGAGGTATAATGACAGACCGGGAGGCTAGATTCGA
AGGAATCGGCGGATCAATTTTGTGTTATATATGGTAATCCTTCTGATATCCGAATTAGATCCTAA
ATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCACTCCTCCCCCATTAGTTG
ATACTTCAAGGAGGTTTTACCCGGAATTAAAGAAAAAAAATAAAC
Right flanking sequence: Indices 15595 -- 16094
AGAATACCAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGA
TGTAAGGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAG
GGACACCATTTGCTGCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATG
CAACGAGCGGAAGTTATGAGGTCCTGGTCTCGGAATCCCATCTTCCAAGGTCAGGAGCCACGGAG
CCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATAT
CCCAACTATTCTCTATCCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAGATGCCGATAAG
GAATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCACTCCCGCGCTATCAAAGTAGAGAT
ATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACTTTC
Found at i:17847 original size:1 final size:1
Alignment explanation
Indices: 17841--17867 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
17831 CTCTTGTCTG
17841 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
17868 GAATAGGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 17341 -- 17840
AATAGCTTTTCTCTGAATCCACCACTCACTCTCTTTCGGGTAGGGTTAACAAGAAAGTCAAAGCA
ATCTCCTCAACCTAGAAAGAGAACTCCGGGATCTTCTTTTTCTTCTTAAGAACCCGAAGGCGAAC
TAATCCGTCTTGGTGCAGCTCCTAGTCCTGATCGATTGGCTACCGGGTGTTCACTCAAACTAAAA
AGAAAAGGAATATAATATAGAATCCGGATCCTCATCTCCTTCCCGCTTTAGTTTCACTCTTATCT
CGGTTGCTAACCGGTGTGGGAGATGAAGCCAAGTCCTTTCCCTTCAAGGATCTAACTGCCACTCT
TTCTAGTTTCATTCAACTGCCACTAACCCATATGCTTAAAACATCTCATTGGAGGTGGGATAGAG
CTAATTCTGGGATCGATCGAATGTCTCTCATTGTGGTCTTGATTTTAAGCTAGTACAATCAATGA
TTCTGGTATGAATTTGGTAGTCATCTTGATCTCTTCTCTTGTCTG
Right flanking sequence: Indices 17868 -- 18367
GAATAGGTCTTCCCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGTTTAT
GGATAGAAAGAATATCCCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTCTTTC
AATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCACTAGG
TTAGATCTCGTCTGTGATCCCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATCGATCGTGGC
CTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGGCACCTTA
CAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGTCCCAGC
AGGCTACCTCATCGGGAAATCTAAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATACATTG
ATTATCTGGGTCCGATCGTCGCTAGAGGCCCGTCGACTATAATAC
Found at i:31344 original size:27 final size:27
Alignment explanation
Indices: 31306--31359 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
31296 GAAGTACGAC
31306 GAAAAGGGTATGAAATAGGTTGCTTGT
1 GAAAAGGGTATGAAATAGGTTGCTTGT
31333 GAAAAGGGTATGAAATAGGTTGCTTGT
1 GAAAAGGGTATGAAATAGGTTGCTTGT
31360 AGCGATTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.30
Consensus pattern (27 bp):
GAAAAGGGTATGAAATAGGTTGCTTGT
Left flanking sequence: Indices 30806 -- 31305
CACTTCCACTTAACAAAGGAAAGATATCACACACTACACAAGACAATCATGTGCAAGCTGCTTGA
GTTGAATCAGCCTCAATTCCTCTCTCACTCACGATGAAAGCTAAGAGCTTGCTCGAAGACAGCCT
TGACTTTATAGTTGTAATCTATCCTATCCTTTAGGCGGGGATAGGTTCATAGGAGGACTTGGTTA
CATAGGAAGGAAAGGCTTAAACTAGAAGGGATAAGAAGGGGAATTTGTGCAACACTCTTAGTAGA
AGGCCGAGTTGAAACTCCCTCTATCCTCAGTTATTGCGTACAGGACAAGCAAGTTATTGAGGGCT
CTTTATGCCAAATACTTTTAAGGGGATAAAACAAGAAATCTCCTAAGCAATAAAGATCTTCCTAT
TGATAGTGAGACTGGCTCCCGGGGAAAAGGAATTACACTATATCTTGGCAATGGCACTCCAACAA
GCTCGGCAGGGAGAGAAAGAAGAGAAGGAGAAGAGGAAGTACGAC
Right flanking sequence: Indices 31360 -- 31859
AGCGATTTCGATTGCTTATTCGGTTGGGATTACCAGCCGACTTGCCTGACCAAAGAATAAGATAA
AAAGAAGAGTTCCCGCCTACGGCTACATGCCCATTAAGAGCTATACCTGGAGTCGAGCTAACTGC
ATAAGAAGAGGGGAACTTTCCTAAAAAGCCTAATAGCAATTAACCGCATTGGAAACGACGAATCA
CACTCTGAAAGGAGGCACCCTCCCTTATTACGTTACGGTCGAACCTCGCCTTTCTTCCTTCCTCT
CCCGTTGGTCGAGCGTCTTCAAACCTTCGCTCCAATACTTTCGAACAACTCTCGTACCCTTCGCT
CATAAGCTAACTAAGAGCATGCCTTCGATCCGGCGTGAACTCTTTGCATTGCCTGTAGAGTAGAT
GTAGTAGATTGAGATCTCTCGACAACCGTAAGAGGTTAAGGTTCCAACCTGGGATTGTAGTTCAA
TCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG
Found at i:47830 original size:27 final size:27
Alignment explanation
Indices: 47800--47851 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
47790 TATGGGTAGG
*
47800 AGTCAAGTGGAACATAGAATTGTTTGT
1 AGTCAAATGGAACATAGAATTGTTTGT
*
47827 AGTCAAATTGAACATAGAATTGTTT
1 AGTCAAATGGAACATAGAATTGTTT
47852 ATTGACAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
AGTCAAATGGAACATAGAATTGTTTGT
Left flanking sequence: Indices 47300 -- 47799
GAACCGAAGGCTGTTTGCGTACTTGCTTGTTAAAGCCTGAAAAGAAGCCAATAAGGCGCAGTTAC
AGCTACATTGGATAGGGAAAGGGTCGAAGTTGCGAAATCAGGCATAGGGTGTACGAATAGCACTG
ATCGTAGACCATCCAGATGCTTATGGGGCAGAACAGACCGATTGATTAGTTCCCGTGATCGTAGA
TCCACTTTAGCTAATGCAACTCGGGAAGAAGCTGCTAAGATCCCGTCGCTTACAAATGCTCCAGC
GTGAAATAAAGACTTTTTTAGGTACAGGGATAAATTCGTACAAGAGTGCGAGGACGGAAAAGAAA
ACGACCTTCTTTGACGCATGTTCTCCCAATAGTGCGAGTACTGACTTGTTCGTAGAAAAGAAGAG
TCCTGACTAGTATACCGTCTGCTATTCTTACTAAATCTCAAGATTGAATTGGTAGTTGTACAATT
GAACACGGTATGGGAACTATACAAATTGAACACGGTATGGGTAGG
Right flanking sequence: Indices 47852 -- 48351
ATTGACAAGTTTGTGGGTATGTGGTTTTTGCATTTCGTTCAATAGGGGGAACACGAGACCTATAA
AGAAAGGGGAATACAGATAAATGTTTTTTAGATTTTGACGCATTAGTAGGATTCATTCTTTTCCT
CTCCACAGATACCGAGATCTATCCTTAGATAGACGCACTATAAAGTTGAACAGGAAAGTTGAGAC
TGGCTTGTTCATGAGGCTAGTTCAGGAATTAAGGTTTTCTAGTTTCAATCTATAAATACCGTTTA
GCCCTCACTCGCCGGTGGGCTCACAACACTTGCTTTGTTGATTGAATCGATCGGGATGCCCTCGG
GGGCATCCCTCCCTGTTGTTGTTGATTGAACAGTGGAGATTCTCATACTTGTTAGCTGACTTCTT
GCTTCCTTCGTACATTAGCTGCACTAGACTGTTGAGCTATAGAGTTTAGACTGACTGACTCCATG
GCACTAGTTAATAGCTATCATAGATCGTTCCGGCCTGTGATCATT
Found at i:107593 original size:20 final size:21
Alignment explanation
Indices: 107563--107606 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
107553 AAGACAGGCA
107563 AAGGTAAGGGGAAAAACAGAT
1 AAGGTAAGGGGAAAAACAGAT
*
107584 AAGG-AAGGGGAAAAACAGTT
1 AAGGTAAGGGGAAAAACAGAT
107604 AAG
1 AAG
107607 AATGACTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.52, C:0.05, G:0.34, T:0.09
Consensus pattern (21 bp):
AAGGTAAGGGGAAAAACAGAT
Left flanking sequence: Indices 107063 -- 107562
TCTAGCAAAGAAGTCAGCTATGGGCAAGACTTGGGGCGGGCCACCAAAGCGGGTTTAGCCGGTTA
GAGCTCAAGAGAATCGCTTCACGCCTTGCTTGCAAGAGCTAGACAGCAAAACCATTCCTAGCCAC
CATTGCTTTCGAAAGAGCCACCATTTCAGGGAACATCTACTTGATAATTTTCTATAGTGAAAGCC
TTTTTCCAGGCAAAGACCCCACTCATAGGGTGAAGGCAGCCATCACTGGAGAATAGCTCCTAGCC
TTATTCTAAGAAGGCGCATGCCATCAAACGAAAGGAAGGGCCCAAACCGTTAGGGAGCATATGTT
TCCAATAGCAAGAGTCAGTCCAAGCAGCGGAACACGTTACCCATTTCAACTAGGGAAGTTTCCAA
ACTCAAATTCGAAATGAGATCTTCCATCTTGATTAGCATGGTAGGTAGGCATGAAAGATGAGGCA
AAGAATGTTCCGCATCTCCCCGGCCAGAAGCTTTCAAGACAGGCA
Right flanking sequence: Indices 107607 -- 108106
AATGACTTTGCTAGGAGTTAGGACCTTTCATCCAATACATGTCCAGGGGATTTTGATCCCAATAG
AATGCTATTTTACCTAGGTCAAAACCACGTTAAGGATACCTCTTTATACCCTTTCTATTATAGGC
TTAAAGCATGAGGGTGGACCCTTATTTTAGCTTGCCTATAGCAGGTATTAGAGAAGGATGACCCG
CATGTGGGTGAAAAGCCTCTCTAATACTAATAGCGGAGAGTGATAGTACGATGGATAGGTCTCAT
CAGAGGTTCTGGCTGGTATTGCTGCTATAAGTCCGTTCGGGGAGTCCGTGGCATAAACAAAGAAG
GATTTGAGTCTGAGAAAGACTGTTTCCCCATTTTCATACGAATAGTGAGAAATCTCAGAGTTTAT
CCAGTTGGGGCATAGAAAGAAGACCTGAACTCGGTGTTTCCTCAATCTGAATAGATCAATCTGGA
TTATAGGCCAGCAAGCCCGGAACCAGCAAGTGGGAGCCTGCTGGC
Found at i:112312 original size:39 final size:39
Alignment explanation
Indices: 112258--112336 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
112248 CTATTTTCTA
*
112258 TTCACTCATGATCTGGCCTAGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
*
112297 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
112336 T
1 T
112337 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
Left flanking sequence: Indices 111758 -- 112257
GCCCACACCTGTGTAGAGTGGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCGACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTATAATCAATTTAAAACC
ATCTGCTAGAGGTTGTAACAATCCAAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACTGCTATGTACATTTTCTATTTTCTA
Right flanking sequence: Indices 112337 -- 112836
GAAGGATGGGACCTTTTCTCGAAAAAGAAAGGAGATTCTATTTCTTCTTCCAAGCCCTTCTTAGA
AGATGCAGTCAGTAAGCTCTCACTTATCTTCTTCATTTACGAAAATAGATAGATAAGAAAAGATG
TCAGCCTCTCTTTTCTCGCGGAACACTCACTTCATGGAGCTATTTGAATTGGAAGACAACGACAA
AAGTGAAAGAAGGAGGTCTATTTCGTTGATCGATGTCAATGGACCAAGAAATCTGTCCTTTGCTG
AAAGCTCATAGGGTAAGAAGAATTGAAAGGTAGGTTTTGTCAGTGATTAAATGGAAAGGTCAGCT
GGAGCGAAAACCAATCAAACTCAGAAAGATAGGTAGATCGAGCGCGCTGAGGGAAATTCGAGAGA
TCCGGAGACATGGCCACTACTGGCCTACGGTCCTTGCAGATTACATAGCACATGCTAAGAGCTGC
GATGCCTGCCAGAGGTATGCAGGAATCCAGCACAAGCCGGCTTCC
Found at i:116252 original size:18 final size:20
Alignment explanation
Indices: 116229--116327 Score: 89
Period size: 21 Copynumber: 5.0 Consensus size: 20
116219 TAGTCGAGAA
*
116229 AAAGACTGA-CATGA-AAAC
1 AAAGACTGATCAGGAGAAAC
*
116247 AAAGACTGATGAGGAGAAAC
1 AAAGACTGATCAGGAGAAAC
*
116267 AAAAGACTGATGAGGAGAAACC
1 -AAAGACTGATCAGGAGAAA-C
* *
116289 AAATACTGA-C-GTGAAAAAC
1 AAAGACTGATCAG-GAGAAAC
*
116308 AAAGACTGATGAGGAGAAAC
1 AAAGACTGATCAGGAGAAAC
116328 CCCCGTGAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
18 9 0.14
19 13 0.20
20 15 0.23
21 28 0.42
22 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.24, T:0.11
Consensus pattern (20 bp):
AAAGACTGATCAGGAGAAAC
Left flanking sequence: Indices 115729 -- 116228
AAGCTGGAAGATAAAATTGTGAAAGGTTTCTTTCTTGCACCAAAAGCTTATAGTTACTACACCTT
GGAAGGAAGCACAGTCAAAAAATACAAGGGACCTGCTAAAGATAAGGTCACTCCCGAATGGTTTG
AGAAACAGTACGCAGAACCATCGAGAAGGGTGCAGGTCAAGGTGGATGCAAAATTCAGGATTGAT
TGGGAAAGTTTGGAGATCAAAAATAAAGAAATCATCTTCAGTTTAGGTCTGAAAGAGGGGTCTAA
GAGGTTACCCGTATATGACAGTAATAAGAACTGGGTGGATACTGAGCCTATTGCTATACATGACT
TGTCTAACATAGACTACATTAGTAGAAAAGTGATTTCATCACTAAGTGATAGAGTACTCCATCTT
GAGAATGAGAGACTCAATGAGAAATTAGAAGAGAGGAATAGAGAGATTGCCAAGTTGAAATCACA
GATTGAAGTACAGACAGGGGTCACTAACCAAACATTAGTCGAGAA
Right flanking sequence: Indices 116328 -- 116827
CCCCGTGAAAAGACTAGAGCCCTCTGTGCATCTCCTCCATGAATGTGATCAACAAGTATTTTAGT
ACCAACCTTGAATCTTATAGCACTTGAATCTTATAGCTAGCCTAAAATTTAGTATAGATAGGAAA
GAGGTAAGAACCAGTGTCTATTTATTGCATGCCTAAAAACAAGTTTGAGTTGAGAAGGGATCGGA
GATGAATGAAGCATCAAGGACATCCAAGACGTACGGAAGAACTTCATATAAAGGGAGTTCTTGCA
TTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGCTTTGGCCCTTCTGTGGGCTTTCATCGAG
GTTTCATCGAAACAGGACCATTTTGAGGACTTTCTTTGTGATGGTTCATGTAGGCTTGGGTCTTT
CATTCGGGCCCTATTGGGTGGGGCACCCTGTGGGCCAATGCGTATAACTTGGGCTTTCTTAACGT
GGCTCATTTGACGACTCAGTACATGGATGTCACGAGTCTATTGGC
Found at i:116271 original size:21 final size:20
Alignment explanation
Indices: 116243--116327 Score: 109
Period size: 21 Copynumber: 4.2 Consensus size: 20
116233 ACTGACATGA
116243 AAACAAAGACTGATGAGGAG
1 AAACAAAGACTGATGAGGAG
116263 AAACAAAAGACTGATGAGGAG
1 AAAC-AAAGACTGATGAGGAG
* * * *
116284 AAACCAAATACTGACG-TGAA
1 AAA-CAAAGACTGATGAGGAG
116304 AAACAAAGACTGATGAGGAG
1 AAACAAAGACTGATGAGGAG
116324 AAAC
1 AAAC
116328 CCCCGTGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
19 10 0.19
20 15 0.28
21 28 0.52
22 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.25, T:0.11
Consensus pattern (20 bp):
AAACAAAGACTGATGAGGAG
Left flanking sequence: Indices 115743 -- 116242
AATTGTGAAAGGTTTCTTTCTTGCACCAAAAGCTTATAGTTACTACACCTTGGAAGGAAGCACAG
TCAAAAAATACAAGGGACCTGCTAAAGATAAGGTCACTCCCGAATGGTTTGAGAAACAGTACGCA
GAACCATCGAGAAGGGTGCAGGTCAAGGTGGATGCAAAATTCAGGATTGATTGGGAAAGTTTGGA
GATCAAAAATAAAGAAATCATCTTCAGTTTAGGTCTGAAAGAGGGGTCTAAGAGGTTACCCGTAT
ATGACAGTAATAAGAACTGGGTGGATACTGAGCCTATTGCTATACATGACTTGTCTAACATAGAC
TACATTAGTAGAAAAGTGATTTCATCACTAAGTGATAGAGTACTCCATCTTGAGAATGAGAGACT
CAATGAGAAATTAGAAGAGAGGAATAGAGAGATTGCCAAGTTGAAATCACAGATTGAAGTACAGA
CAGGGGTCACTAACCAAACATTAGTCGAGAAAAAGACTGACATGA
Right flanking sequence: Indices 116328 -- 116827
CCCCGTGAAAAGACTAGAGCCCTCTGTGCATCTCCTCCATGAATGTGATCAACAAGTATTTTAGT
ACCAACCTTGAATCTTATAGCACTTGAATCTTATAGCTAGCCTAAAATTTAGTATAGATAGGAAA
GAGGTAAGAACCAGTGTCTATTTATTGCATGCCTAAAAACAAGTTTGAGTTGAGAAGGGATCGGA
GATGAATGAAGCATCAAGGACATCCAAGACGTACGGAAGAACTTCATATAAAGGGAGTTCTTGCA
TTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGCTTTGGCCCTTCTGTGGGCTTTCATCGAG
GTTTCATCGAAACAGGACCATTTTGAGGACTTTCTTTGTGATGGTTCATGTAGGCTTGGGTCTTT
CATTCGGGCCCTATTGGGTGGGGCACCCTGTGGGCCAATGCGTATAACTTGGGCTTTCTTAACGT
GGCTCATTTGACGACTCAGTACATGGATGTCACGAGTCTATTGGC
Found at i:116420 original size:16 final size:16
Alignment explanation
Indices: 116399--116429 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
116389 TAGTACCAAC
116399 CTTGAATCTTATAGCA
1 CTTGAATCTTATAGCA
116415 CTTGAATCTTATAGC
1 CTTGAATCTTATAGC
116430 TAGCCTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (16 bp):
CTTGAATCTTATAGCA
Left flanking sequence: Indices 115899 -- 116398
GGTGGATGCAAAATTCAGGATTGATTGGGAAAGTTTGGAGATCAAAAATAAAGAAATCATCTTCA
GTTTAGGTCTGAAAGAGGGGTCTAAGAGGTTACCCGTATATGACAGTAATAAGAACTGGGTGGAT
ACTGAGCCTATTGCTATACATGACTTGTCTAACATAGACTACATTAGTAGAAAAGTGATTTCATC
ACTAAGTGATAGAGTACTCCATCTTGAGAATGAGAGACTCAATGAGAAATTAGAAGAGAGGAATA
GAGAGATTGCCAAGTTGAAATCACAGATTGAAGTACAGACAGGGGTCACTAACCAAACATTAGTC
GAGAAAAAGACTGACATGAAAACAAAGACTGATGAGGAGAAACAAAAGACTGATGAGGAGAAACC
AAATACTGACGTGAAAAACAAAGACTGATGAGGAGAAACCCCCGTGAAAAGACTAGAGCCCTCTG
TGCATCTCCTCCATGAATGTGATCAACAAGTATTTTAGTACCAAC
Right flanking sequence: Indices 116430 -- 116929
TAGCCTAAAATTTAGTATAGATAGGAAAGAGGTAAGAACCAGTGTCTATTTATTGCATGCCTAAA
AACAAGTTTGAGTTGAGAAGGGATCGGAGATGAATGAAGCATCAAGGACATCCAAGACGTACGGA
AGAACTTCATATAAAGGGAGTTCTTGCATTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGC
TTTGGCCCTTCTGTGGGCTTTCATCGAGGTTTCATCGAAACAGGACCATTTTGAGGACTTTCTTT
GTGATGGTTCATGTAGGCTTGGGTCTTTCATTCGGGCCCTATTGGGTGGGGCACCCTGTGGGCCA
ATGCGTATAACTTGGGCTTTCTTAACGTGGCTCATTTGACGACTCAGTACATGGATGTCACGAGT
CTATTGGCATAGAATATGGAATCTTTTCCACGTAAGCTGGTTGTGTTTGTTTGCTCATAAAGGAA
GTGTGTTTTGGAAATCTTTTTTTTGCTCCGCAAGGTAGCGCCAGT
Found at i:156927 original size:18 final size:18
Alignment explanation
Indices: 156887--156929 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
156877 ACCGCCCTGC
156887 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
156906 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
156923 CATAGTC
1 CATAGTC
156930 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 156387 -- 156886
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 156930 -- 157429
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:158567 original size:21 final size:21
Alignment explanation
Indices: 158541--158584 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
158531 ATATCTAGTT
158541 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
158562 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
158583 TG
1 TG
158585 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 158041 -- 158540
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 158585 -- 159084
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTGAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTATCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGTTTGGAA
Found at i:160189 original size:25 final size:25
Alignment explanation
Indices: 160161--160210 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
160151 AAATTGGGGT
160161 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
160186 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
160211 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 159661 -- 160160
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTTCAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 160211 -- 160710
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATTCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAG
AATCCTCCAATTGCTAGGGAAAGAATATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Found at i:188201 original size:12 final size:12
Alignment explanation
Indices: 188184--188213 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
188174 GGAGAGGCAT
*
188184 CTGACTTTCTTA
1 CTGACTTTCCTA
188196 CTGACTTTCCTA
1 CTGACTTTCCTA
188208 CTGACT
1 CTGACT
188214 GAATCACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.10, T:0.43
Consensus pattern (12 bp):
CTGACTTTCCTA
Left flanking sequence: Indices 187684 -- 188183
TACCGCTCTCTACTATAAGAAAATCCAAGAAAGAGAGTCGCTCCATAATAAATAACTGCCATGAA
TTACACACACGCAAGTAGTGGCTCGGCTAGAGGAAGAAGCCGGAGCCTATGCACTACCGAAGAAT
GGACCTGATAGAATCAATCGATTGCATAAGATATACCAAAACCACTTACTGGTCTTGCATAAAGA
AAAAAAGAAGTCAAGTAGACTCGGAAAGAAAAGAGATAGTGAAACCCTCTCCCGCCTTTTCTATC
TATCCTTAGAAGTAGGACGAGTGTCCTACCTAATTGTTAGATTAGAATAATGGAGAAGGGAGAGG
TCTTCAAAAAACCCTATACTCCCACTTTCCTTTCTTTGAGATTTCCAAAAGGTGAGATTTCGCAA
CAAAAATTGGGTGGGCCCCATAAAGAAAGAGTGAGCGCTCACTCTTTCTTTATTTTATGGGGAGA
ACCGCATCTATTCAAAGTAAATGTTTCGGCCTGCAGGAGAGGCAT
Right flanking sequence: Indices 188214 -- 188713
GAATCACTTGAATCAGTTGAAGGAGGTTTCTACAGGAAGAGTTGCGACTCCGCGTCGAGGCGGGC
GGGGGTTCATGACGAGTGGGCATGAACTGTAACCAAAGAAAAGTAAGCCAACCACGAATTCCTGA
ACCGTAAAGGGAACCGCCCTGTAAAGAGCCTCGCCTAAAGGACCAGACCGGGAGCTGAGAACAAG
ATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACTTATTCATAAGGGATAGG
ACTGGCCTTATAGAAGGTTGGGGCTTGCTCGAAATCTGTCAAATACGAGCCCTTCTTTCTCTATT
CAATCCACGGCCTACCTCGATACACCTGTGTCACAACGGCTTATTTTTTGAGTGAGGGAAGCCAG
AGCATTGGTCAAGAGAGAGAAAGAAGAAGAACTATAGATCGAGAAAGTCACATTAGCTACACCAG
ACCAGACACACTTTCTTTTTTTTACTATTTTTTGACTGACCGGAT
Found at i:206866 original size:16 final size:16
Alignment explanation
Indices: 206841--206880 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
206831 AAAGTGGAAA
*
206841 CTTTCCGCGGGATCCT
1 CTTTCTGCGGGATCCT
*
206857 CTTTCTGCGGGATGCT
1 CTTTCTGCGGGATCCT
206873 CTTT-TGCG
1 CTTTCTGCG
206881 CTACGATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.05, C:0.30, G:0.28, T:0.38
Consensus pattern (16 bp):
CTTTCTGCGGGATCCT
Left flanking sequence: Indices 206341 -- 206840
CTACTAACCAAGCCAAGCCCAGTTCCCGCCGATAGGCGCTGGTAGCTTGCTTCCAAGCCTTGCCT
TATATGATAGTTGTGGCCATGGCCCGAAGGAGCCTTAAGCACTTGTACAATGCTTCAAGTCAAGG
CCCCCCCCCACTCGTTGCCCAGAGCCTTGACTTTCCATGTTTTTAGTCAAATGCGCGCTAGCGCG
CTACAACTAGCACTTTTTTCTCTGATAGGCTCGCTTCTTCAAGCTCCGCCCCTTATTGAAAAAAA
AAGCGCTAACGCGCCTTTACTTTTTTTTATTATATAATACCTTCTTTCTACTTCTTTCTCAAAGT
AAAGCAAGCAACCTTTCGCCTTTATTTTTTTGAGGAGATATAAAAAGAAGCAACCTTACTAAGCA
AACGTAGGCTTGGGCTCGAAAGCAAGAAGCAACGGCTTTCGCGCTTGTTGGAGCTATTAAGCATC
TTAGACTATTCCATTCCATTTTTCAGCTGGACAGAAAAGTGGAAA
Right flanking sequence: Indices 206881 -- 207380
CTACGATGGACTGTTTTACTCTTTAAGTGCGCCACTCCTTCTTTTGTCCTGTATCTGTAGCTGCT
TTTCCCGCACTCTCTTTTATCCCGCCGAAGGTCCCCCTTACGTAATAGGGGTTAAGTTAAGGGGG
GTGCACGCCGTGGTCAAATCTGCATGAAAAACCGCGGGGAATCATTAGTATTAAGTATTATGCTC
CCGCACCCCCTATCTCTTAAAGGCTCTGCGCTCCCGCATTCTGATTGATCCTGTGTAATGTTGTA
ATCCTGCTGTTCCTTTATCCCCCGCTCCGCAGCTGCTGGAGACTTAGTCATATTTTGAGCCTTTT
GCGGTACTGATTGATGTTATGGGGATTACTTGGGTTGGCCGGACTGTTTGTTTGCGAAGGCCGAA
GGACTGAAAAATGAGGTTTTTGGTGTTATTGGACAGAATTGGGTTTTCCCACGCCTCATTTTCCA
TAATATGATTATGAGCTGCAGAACGCTTGAAGCTGGAATTTGAGC
Found at i:231182 original size:18 final size:18
Alignment explanation
Indices: 231142--231184 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
231132 ACCGCCCTGC
231142 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
231161 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
231178 CATAGTC
1 CATAGTC
231185 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 230642 -- 231141
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 231185 -- 231684
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:232822 original size:21 final size:21
Alignment explanation
Indices: 232796--232839 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
232786 ATATCTAGTT
232796 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
232817 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
232838 TG
1 TG
232840 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 232296 -- 232795
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 232840 -- 233339
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTGAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTATCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGTTTGGAA
Found at i:234444 original size:25 final size:25
Alignment explanation
Indices: 234416--234465 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
234406 AAATTGGGGT
234416 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
234441 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
234466 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 233916 -- 234415
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTTCAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 234466 -- 234965
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATTCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAG
AATCCTCCAATTGCTAGGGAAAGAATATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Done.