Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058313
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 371275
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Found at i:34057 original size:71 final size:70
Alignment explanation
Indices: 33932--34067 Score: 211
Period size: 71 Copynumber: 1.9 Consensus size: 70
33922 CGCTATTCGA
* *
33932 TGAAGAAAACAGACTTTAGTCAAGTGGTAAGGTAGTTCAGCTGGTTAGAGCAAAGGACTGAAAAT
1 TGAAGAAAACAGACTTTAGTCAAGTGGTAAGGTAGCTCAGCCGGTTAGAGCAAAGGACTGAAAAT
33997 ATCCT
66 ATCCT
* *
34002 TGAAGAAAACAGACTTTAG-GAAGGTGGTTCAGGTAGCTCAGCCGGTTAGAGCAAAGGACTGAAA
1 TGAAGAAAACAGACTTTAGTCAA-GTGG-TAAGGTAGCTCAGCCGGTTAGAGCAAAGGACTGAAA
34066 AT
64 AT
34068 CCTTGTGTCA
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
69 2 0.03
70 23 0.38
71 35 0.58
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.22
Consensus pattern (70 bp):
TGAAGAAAACAGACTTTAGTCAAGTGGTAAGGTAGCTCAGCCGGTTAGAGCAAAGGACTGAAAAT
ATCCT
Left flanking sequence: Indices 33432 -- 33931
TGGCAAAGTTCATCATTCAGCGGCGGGGTGTTCATAGAAAAGAAGGCGTCGCCCAACGAATGGCA
GATTTGGGTGGAGTCTCGCTCTATAGATAGAGGAAGAGTACGCGCGCTAGCGCGCTACGGCTTAC
GCAGTTGATCGGATCAGATAGCCCTTCGGGCAACCCCGGCACATCAAATTCCATTCCGATCAACA
ACTTGGAGGTATGGCTGAGTGGCTTAAGGCATTGGTTTGCTAAATCGACATACAAGAAGATTGTA
TCATGGGTTCGAATCCCATTTCCTCCGGCACGGAAGTGAAACGGGCGGGCGAAATTACGTGAGAG
AGAGAACCTCTTGGTGGAGTCCAGTCCCTGGACGGCTCTCGGTTATTGAGCATGGTTGAGGGATT
AGGCGGCAAAGAGCTGCTCGAAAGCTTGACGAACAAGCGAAAAAGCCTATCAATTCTTTTCTTTT
TAGTTTAGGGTTTTTCCCTTACTGGTAAGGTAGGGCGCTATTCGA
Right flanking sequence: Indices 34068 -- 34567
CCTTGTGTCAGTGGTTCGAATCCACTTCTAAGCGGGCGAAGGGTCCAAAGGCCGGGAGCGAGCCG
GATTTCAAAATGAAAGTTAAAGAGTAAGCCAAAAAATGTGAGCGCTCCTGCACTATAGGCTTTTT
TTGGCGTCGCCCTATCTTGCTGTAGGCAGATAAAAAAGCGGTTGATCGCTCAGATTGGTTCTCGC
GTCCCTGCGCCCAAAAGGACGGGCGAGTTCGGTTTGAGTGTTCATCGATCGGGTGGATCTATATG
CTCCGGGGTGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACAGAGGGC
CATAGGTTCGAATCCTGTCACCTTGATGTGACGCGAAAGATCATCAGAAAGGATACAACCCCTTT
CTCTTTATGATCTCCTAAAAAATAGGATACAATTATGCCAGTCGTAAAAAGTAATGCTGTTCTGC
AGGAGCTACCAGTTCGTCCGGATATCTTATCGCAAGTATATGAAT
Found at i:40173 original size:23 final size:23
Alignment explanation
Indices: 40143--40189 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
40133 CCTCTTCCTC
40143 TTCCTTACAGTCGAGATACTACG
1 TTCCTTACAGTCGAGATACTACG
40166 TTCCTTACAGTCGAGATACTACG
1 TTCCTTACAGTCGAGATACTACG
40189 T
1 T
40190 AACCTCACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (23 bp):
TTCCTTACAGTCGAGATACTACG
Left flanking sequence: Indices 39643 -- 40142
GAGATGACTGGTTTATCGATACACTCGAGTAGACAACAAGCCCAACTTATTTAGCCTCTATCGCG
CAAAAGGGACTCCTTTTCTTTATAGGTGTTATCGTTACATTCAAGCCTAAACCTAGGGTACAAGA
TCAAAAAGAATGCATTGGAACAGATCTGCAAATATCTCTTGACCTGTGGACCTGTCTCACGTGCA
AAGAAACCGGAATTCATGAATAAGTCAAAAAGCACCTCGTATGTGAAATATCTCTTTTGTGTTCC
TGGAGTACATATCATTCATCTGCAAAGAAACCAGATCCAGCCGTATGATGCGAAAGAGCTAGAAT
TCGAACTCTTCCAACGGGTATACTATGTATGGCAGATCAAAGATCGTAGGCTTCCTATTCTTGCT
TTTATCGTTCGTATACCATTTCTTACGTGGTTACTCACTTGCCATAGAACAGGACTCTAAACTAG
CCATTACCCTGAGCTCTAGTTCTCAGTCGGCGAAGCCTCTTCCTC
Right flanking sequence: Indices 40190 -- 40689
AACCTCACAGCTTATATACTCTTTCTATAAGACCGTAGGTGCATAAGAAATCTCTTAGATAAGAA
ACCACGCTTTTTGCTTGAAATGCGATAAGTAACTGTTTTCGTCTTGGGTTGGTGTTCAAACAAAG
ACAAAGACAGTGGACTCTGAAACAAATGATTTCGCCGCATCTAAGAATTGGGGTGAAGTCGTAAC
AAGGTAGCTGTAGGGAGAACCTATGGGCTGGATTGAATCCTTCTTTTTTTCCGGTATGCCGCTCC
GCGAGCAAGGAGCGATAGAACCAAGCGGGCTGTGGTGATGTCAGAATTTGCACCTATTTGTATCT
ATTTAGTGATCAGTCCGCTAGTTTCTTTGATCCCACTTGGTGTTCCTTTTCTATTTGCTTCCAAT
AGTTCGACCTATCCAGACAAATTGTCGGCCTACGAATGTGGTTTCGATCCTTTCGGTGATGCCAG
AAGTCGTTTTGATATACGATTTTATCTTGTTTCAATTTTATTTAT
Found at i:78993 original size:25 final size:25
Alignment explanation
Indices: 78961--79010 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78951 CGACTGAGTT
78961 GAAGAGGCTTCGCCGACTGAGAACA
1 GAAGAGGCTTCGCCGACTGAGAACA
78986 GAAGAGGCTTCGCCGACTGAGAACA
1 GAAGAGGCTTCGCCGACTGAGAACA
79011 CCTAAGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.32, T:0.12
Consensus pattern (25 bp):
GAAGAGGCTTCGCCGACTGAGAACA
Left flanking sequence: Indices 78461 -- 78960
ATATCAGAGTTATTGGAACTCAATATCTTCTATAAGGATATGTATTATCCACCATCACCTTATGG
TATACCAACTCTAGGTGAAATATGCAGAGTCTTATTCAATCTATTCTTGGCCGAAAGCTTTGATC
TTGGCTTTGCTCGAAAGTATCCTAGTATTGAGTTTGAGAGGTATTATGATACTGTTTTTATCTTT
ATTAAAGACGATGAACAAGAACAGGCTTTCTCCGGGATAGAAGATATGCTGGCAGATCTTGATCT
AATCAACGGCTATATAAAGTCTATCGATACTTTAGGATGTATGTACTCGAGAATAGGACTTGTCA
AGAAAGTCTTGCGTATTGCACCTGATGGCACGTTAGAACGTGGGGAAGATCGATTTGATTGTATT
TGATTCGAGTAGGATGTTGCTATGCAGTAGAACGATCGAAGAAAGAAACCTCTTGCATGTGCTCT
TTCGTCACTGTTGGATGTGAGGTTACGTAGTATCTCGACTGAGTT
Right flanking sequence: Indices 79011 -- 79510
CCTAAGAAAGAAAGCTTCTAGAACACTTATCTTATGCAACTACTGTGGTACCACTGCAGTGAGGC
TTCGCCGACTGAGAACAGAAGAGGCTTCGCCGACTGAGAACACCGCTACCCTAATAGAAAGCTCC
TTGATGTGCCGGATAAAGCAAATCTTGTGCCGGACTCCGATCCCTATGCTTTTCTAACTCACACC
AGAACAACTGCTTTCTAAGCTAAAGGAGTTTAAGCCTTCCTGTACAGGGTTCTCTCACAATAGCA
AATACAAGCCAGAGATATGTTCTTCTTCTATCTCTTTATCTTTATCTAGAAATATTAGACTACCC
TCCCGACCCCTTATAGAGTAAATCAGGCCTATCTCTATAGCTAGAACTCAAAATAGAGTTTGATT
ATTTCATATAGTTCTACCATCTATAGAGTGTGGGACACTGGGTACTTTAACTATTGGTTGCAGGG
CACTGGTTAGTTAAGTAAGAGCTTTACCAGTAAAAACATTCTCCT
Found at i:82164 original size:21 final size:21
Alignment explanation
Indices: 82138--82189 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
82128 GTAGAAGAAG
82138 TGCTATCATAGTAGCTTCCAT
1 TGCTATCATAGTAGCTTCCAT
82159 TGCTATCATAGTAGCTTCCAT
1 TGCTATCATAGTAGCTTCCAT
*
82180 TGCTCTCATA
1 TGCTATCATA
82190 ATCATCATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.38
Consensus pattern (21 bp):
TGCTATCATAGTAGCTTCCAT
Left flanking sequence: Indices 81638 -- 82137
AAACTCGGATATGACGTTCAACTTTTATGCCTTACCTGACAGCGAGCGATACTTGATGCTCTTCT
TCGTTCCAATGGTAGCTTTCTTTAGCTGACATCCTACGTTTAGGCTTGAATGTAGCGTAACACCC
ATGTGTTATCATAATGGCGATATAACGCTCAATTCTAGCCATAGAATCAAGAGCTCGATAAATCA
AGGTAATTTGTGAGCCCTTCTAGTAGCTTCTCGTTTCTCACGCTCTGCCATTGCCATAGACCTCA
GACTCAACAACATTGATCTCGGTCATGGGTCATCTAGGTCTTTGATTCGTTCTTGCACCCGCTCC
CGGGCATCAGAAGTAATAGAAGAAGTGTTGTTGCCACCAGAGCTCTCATTGCCAGAGCTAGAGGT
AGGCTCACAAGTGCTAGTTTCATCAGTGCTTTCTCTTTTTCTTTCTTCTCTTTCACTTCTAGAAT
CATTTCTATCCCGCTCCCGCGCATCAATGGAATTAGTAGAAGAAG
Right flanking sequence: Indices 82190 -- 82689
ATCATCATACGTAGGCAGGAAGTCAGCTAGCGATTCGAGTCTTTCGTCTCCATACATTTCTTTTC
TTTCCATGTATTTAGAGTAAGCGACGTTGACACATGCTATACGATATTTGTACAACATCAAAAGT
CTAAGGTTAGCGTTATCTCCCTTCTCTGCTTCTCTTTTTAGCTCCATATGGGTTCTCTCTTTCCA
TACCCATACGTGTTGTGCTTTATCTTTATCCTTGAATTTCTCAAGAAGTATCTGAACGTCTGGAT
CATAGGGATAAGGAATATCAGCAGAATAATCCCCAGCATACCAGTTGGATAGTGTAATATCTTCT
ACTCTTGTCTTACCTTCCCTGATGTCCTTCTGGGTCTTAAAGATAGCATAGGCCCGGTTTGCACA
TCTGATGTCAGATTTCCAATGCTTGATTAATCTAGGGTTTACTACATCGTCTGAATTGAGTTTGC
TTAGCATTTCTTCTGCTTTTGCTTTTCGATCCCAGATCTCTTTCA
Found at i:126985 original size:16 final size:16
Alignment explanation
Indices: 126964--126996 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
126954 TAGAAGCAAA
126964 ATAGAATTTAAAAAAT
1 ATAGAATTTAAAAAAT
126980 ATAGAATTTAAAAAAT
1 ATAGAATTTAAAAAAT
126996 A
1 A
126997 AAAGGCTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (16 bp):
ATAGAATTTAAAAAAT
Left flanking sequence: Indices 126464 -- 126963
ATCTATTTTTTTATTTACGAAATTCTAAGTGAGGTCATAATAGTCCTTCAACAACCATTGATGAA
ACCATGTGCTATGGCTCGAATCCGCCGTAGTCAAATCCTATTTCCGATAGGGACAGTTGACAACT
GAATCCGCCTTTTACCAAAATTAGGGAAGGCCAGGCCGGCCAATGAGTCTTGTTTCGCGAACAAT
TTCTTCATCTTCCCAGATCGGAGCATATAAAGCGTGCCAAGCATGCGTGCCGACTTTCTGTCCTA
GTGATAGCTGTTCTTCCTGTCTTAGTTAGAGGATAATAAGTAAGGAAGTCTGCAAAGACTGACAG
AGATAGATTAACTGGATGAAGTTTGAAAGAGCAGTCTTTACTCCCACCAATAGTTCAGTCGGGAG
ATAGCGGCCTAAGGTGTGGCTCGGGATTGACCTAAAATGCACTATTGGGCTAACACTCTTCGTGA
AGCTTTAAAATGATAGCATAAAGTTAAAGACATCATAGAAGCAAA
Right flanking sequence: Indices 126997 -- 127496
AAAGGCTAGTCCCTGAGAGATTATGACAATGCGGATAGTGCCCGCTCTGAGTAAGACTATGAAAT
ACCATTCTTCGCTTCCTTGGCACCGGCCGGAACATAATGATCTTCCAATATAACATAGACTTATT
CGCCTGCTTTGTTTCAAAAGAAAGAACCGCTACCTTACTACTTTTTTTGCTTGGTTCATTAAATA
GAGGTGAACCTGGTTCTACCCTTTCGTTTAGGACAAGATCATCTTCTTACAAGACAAGAAGCCAT
CTATCTTTCCTGAACAGGCTACCTACTTCCATACACATAGTAGGAGTGGATGAAGCCATCGCTAT
TAACTGCCCATTTGACCTCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGGATGGCGGAAAGCTG
CTAGGACTGCTTTGTCTTAGAGCATTCAAGTTGAGAGAGAGAAGTTTCGATCAAGGGCAAGGTGG
ATGGGACTAAGCCCTCGACGATTGAGAGATCTGTCCGGATTTTAC
Found at i:132200 original size:43 final size:43
Alignment explanation
Indices: 132139--132220 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
132129 GTTTTTCGCG
132139 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGT
1 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGT
132182 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAA
1 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAA
132221 GAAAAGTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.17, C:0.43, G:0.21, T:0.20
Consensus pattern (43 bp):
GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGT
Left flanking sequence: Indices 131639 -- 132138
AAGACAAAGAACCACCATACATGACATGAAAATAAACTACTTTGTGCGTCTACAGACACTTATTT
AAACCTTCTAGAGTCGACGGACTCCTCTAGTCTCCCCCGCCGTTGGCACGATTTATCGCAGCTTG
CACAATAAGTGCTTGCTGCTCTTGTACCAGCGCCCTCCTCCGGTCTTCCAGACCGCGAATGCGGT
CCCTTATTTGTTGCATAGCGTCTGCTATCATCTCAGGATCGATAGCAGGCAGATGCTCCCAGAAA
AGTGCTAGCCTGTGCTCCCAGTAGAGCTTTGCTGCCTCCACTTGTGCGATTTCATTTGAAATAAT
AGAAAGTCTGTCAATTCCTCCATTGGGATCCATGGCTACTTACTTTCTTCTACTAAGTGCCCTTT
GCTTTGTGCCTAATAGAGACTGAAAGAAGCTTCTATTTATAGGCGTTGGAGGCCCTTAACTCTTT
CCACCAACTAAAATTATATCAATAGTTGAAGTTTTGTTTTTCGCG
Right flanking sequence: Indices 132221 -- 132720
GAAAAGTAAAGAAAAGGGCGCAATAATCGAGCGTAATAGGACAATAATCGAGCGGAATAGGCCAA
TAATCGAGCGAAGCGTCAGATAGTACTCCCCTTTCTCTAATAATAAGGCACCAAGGCCCCTTTCA
TAAGAGATAGAACAATCCCTCACTCGACACCTCAAAGCTGACCAGTACAAAAACACTGTGATCCG
TCCTCGTTTACGTACCCCCACTTGCTTCTAGTTGTCTTTTACTGGCTTATTTCCAGCTACATGAT
GGGATAAAAGAAGAGACCAGTATAGAAATGGGTAAAAAGAGTAGTGAGATGAAAGATAAGGATGC
TGTAAGATGTTTAATGTATGACAAGTTCATGAATATATTCCTAAATAAAGTGGAGATGCATATGA
AATCTAAAAAATGGAAAACTAAGGCTCATAATAAGAATTTTTTTAAAAATGTTAAAAGATGGTTA
TTATGATTGTAAAACGGATAAAGATTTCATTTCTATGAATTACAG
Found at i:132267 original size:21 final size:21
Alignment explanation
Indices: 132241--132295 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
132231 GAAAAGGGCG
*
132241 CAATAATCGAGCGTAATAGGA
1 CAATAATCGAGCGGAATAGGA
*
132262 CAATAATCGAGCGGAATAGGC
1 CAATAATCGAGCGGAATAGGA
132283 CAATAATCGAGCG
1 CAATAATCGAGCG
132296 AAGCGTCAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.16
Consensus pattern (21 bp):
CAATAATCGAGCGGAATAGGA
Left flanking sequence: Indices 131741 -- 132240
CGCCGTTGGCACGATTTATCGCAGCTTGCACAATAAGTGCTTGCTGCTCTTGTACCAGCGCCCTC
CTCCGGTCTTCCAGACCGCGAATGCGGTCCCTTATTTGTTGCATAGCGTCTGCTATCATCTCAGG
ATCGATAGCAGGCAGATGCTCCCAGAAAAGTGCTAGCCTGTGCTCCCAGTAGAGCTTTGCTGCCT
CCACTTGTGCGATTTCATTTGAAATAATAGAAAGTCTGTCAATTCCTCCATTGGGATCCATGGCT
ACTTACTTTCTTCTACTAAGTGCCCTTTGCTTTGTGCCTAATAGAGACTGAAAGAAGCTTCTATT
TATAGGCGTTGGAGGCCCTTAACTCTTTCCACCAACTAAAATTATATCAATAGTTGAAGTTTTGT
TTTTCGCGGGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGTGGTATCGCCACGCG
TCTTAACCCCGTCCCCGGCCCTAAAGAAAAGTAAAGAAAAGGGCG
Right flanking sequence: Indices 132296 -- 132795
AAGCGTCAGATAGTACTCCCCTTTCTCTAATAATAAGGCACCAAGGCCCCTTTCATAAGAGATAG
AACAATCCCTCACTCGACACCTCAAAGCTGACCAGTACAAAAACACTGTGATCCGTCCTCGTTTA
CGTACCCCCACTTGCTTCTAGTTGTCTTTTACTGGCTTATTTCCAGCTACATGATGGGATAAAAG
AAGAGACCAGTATAGAAATGGGTAAAAAGAGTAGTGAGATGAAAGATAAGGATGCTGTAAGATGT
TTAATGTATGACAAGTTCATGAATATATTCCTAAATAAAGTGGAGATGCATATGAAATCTAAAAA
ATGGAAAACTAAGGCTCATAATAAGAATTTTTTTAAAAATGTTAAAAGATGGTTATTATGATTGT
AAAACGGATAAAGATTTCATTTCTATGAATTACAGATTCAAATCGAAAGTTATACAAGGGAGTTT
GAAGGAAAAGAGACTAAGGCTTTTGAGAAATATCCAGCAATGGTT
Found at i:150110 original size:25 final size:25
Alignment explanation
Indices: 150081--150143 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
150071 TACGTAGTAT
*
150081 CTCGACTGTAAGGTTCTGAAAGAGA
1 CTCGACTGGAAGGTTCTGAAAGAGA
150106 CTCGACTGGAAGGTTCTGAAAGAGA
1 CTCGACTGGAAGGTTCTGAAAGAGA
150131 CTCGACTGGAAGG
1 CTCGACTGGAAGG
150144 AGAGGAGAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.30, C:0.17, G:0.32, T:0.21
Consensus pattern (25 bp):
CTCGACTGGAAGGTTCTGAAAGAGA
Left flanking sequence: Indices 149581 -- 150080
TTTTTCCTGGATGGGTTTCCTTACATTAATAATAGGTGGTGACTAATGCCTACGATCGAGAGTCT
GATTATCGTGATAGAAAGGAAGAGCCAGATGGAGATATAGTGCCTAGCGTAGAACCTGCTGCCCC
ATGATCACCAATAGCAAGTTCCATGGCTAATAGTTCGTAAGCTAGCAACAGGAGCAGAAGAGCCT
AAAGCTGTTAATCCTGTTCCAGTACGTAGACTTTATTCTTACTATGATTATGCTGTTAATGAAGC
AGGACGAGCAGCAGTTAAAGACACGGGAGCAGCTCCAGGTCCAGTAGTAGATCCAGCAGTTGTTG
ACCCAATAGATTATGCTTCATTACCCGAATGTTGTAGTGGATTCCGTGCAATTCGAGATATGAGC
GCATTGCACGGAACCCACTACCTATCTACAGTCAATCTTTCTTCTGGGTGACATTCTCTATAGAC
TCAAGTCTTCTATCGTTCGTATACCGTATATAGGTTACGTAGTAT
Right flanking sequence: Indices 150144 -- 150643
AGAGGAGAGGAGAGGTCTACTCACTCGCTTTCAGGAATAGCACTTCTTCGCCCAATACTACTTCT
GAGAACCATTCTTCAACTAGCTCCGGCAATGATAGCTCTAACCATTCTTCCTCCAGCCGAGCCAC
TACTTGCGTGTGTGTAATTAATGGCAGTTTTTTTATTACGGAGCTATTCTCTTTCTTGGATTTTA
TTATAGTAGAGAGCGGTAAGTTAGTGTTGCTCTAAGGAAGTGGTAGCTGTTCCAGTACACAAACA
AGGTGGGTTGGGGTTTAGGAGGTATTTTGAGCGCATGCTTGTTGCTTTAATAGAGAAAGGGCTTG
GCATTTCACTCTTTGTTGTGGGGTTGTCACGGATTGGCCGGCCATACGGATAGGGAAGTCCAAGG
AGCTTTTTATTTGTGGAGGTTTCACATCACACTAATCATTCCATTCCTTCCGGATAACCTAAAAG
GTGCAGGCCTACTTAAGAGAGGGCCCTTTCTTAAATCTTAAAAAT
Found at i:191594 original size:25 final size:25
Alignment explanation
Indices: 191562--191611 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
191552 CGACTGAGTT
191562 GAAGAGGCTTCGCCGACTGAGAACA
1 GAAGAGGCTTCGCCGACTGAGAACA
191587 GAAGAGGCTTCGCCGACTGAGAACA
1 GAAGAGGCTTCGCCGACTGAGAACA
191612 CCTAAGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.32, T:0.12
Consensus pattern (25 bp):
GAAGAGGCTTCGCCGACTGAGAACA
Left flanking sequence: Indices 191062 -- 191561
ATATCAGAGTTATTGGAACTCAATATCTTCTATAAGGATATGTATTATCCACCATCACCTTATGG
TATACCAACTCTAGGTGAAATATGCAGAGTCTTATTCAATCTATTCTTGGCCGAAAGCTTTGATC
TTGGCTTTGCTCGAAAGTATCCTAGTATTGAGTTTGAGAGGTATTATGATACTGTTTTTATCTTT
ATTAAAGACGATGAACAAGAACAGGCTTTCTCCGGGATAGAAGATATGCTGGCAGATCTTGATCT
AATCAACGGCTATATAAAGTCTATCGATACTTTAGGATGTATGTACTCGAGAATAGGACTTGTCA
AGAAAGTCTTGCGTATTGCACCTGATGGCACGTTAGAACGTGGGGAAGATCGATTTGATTGTATT
TGATTCGAGTAGGATGTTGCTATGCAGTAGAACGATCGAAGAAAGAAACCTCTTGCATGTGCTCT
TTCGTCACTGTTGGATGTGAGGTTACGTAGTATCTCGACTGAGTT
Right flanking sequence: Indices 191612 -- 192111
CCTAAGAAAGAAAGCTTCTAGAACACTTATCTTATGCAACTACTGTGGTACCACTGCAGTGAGGC
TTCGCCGACTGAGAACAGAAGAGGCTTCGCCGACTGAGAACACCGCTACCCTAATAGAAAGCTCC
TTGATGTGCCGGATAAAGCAAATCTTGTGCCGGACTCCGATCCCTATGCTTTTCTAACTCACACC
AGAACAACTGCTTTCTAAGCTAAAGGAGTTTAAGCCTTCCTGTACAGGGTTCTCTCACAATAGCA
AATACAAGCCAGAGATATGTTCTTCTTCTATCTCTTTATCTTTATCTAGAAATATTAGACTACCC
TCCCGACCCCTTATAGAGTAAATCAGGCCTATCTCTATAGCTAGAACTCAAAATAGAGTTTGATT
ATTTCATATAGTTCTACCATCTATAGAGTGTGGGACACTGGGTACTTTAACTATTGGTTGCAGGG
CACTGGTTAGTTAAGTAAGAGCTTTACCAGTAAAAACATTCTCCT
Found at i:194765 original size:21 final size:21
Alignment explanation
Indices: 194739--194790 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
194729 GTAGAAGAAG
194739 TGCTATCATAGTAGCTTCCAT
1 TGCTATCATAGTAGCTTCCAT
194760 TGCTATCATAGTAGCTTCCAT
1 TGCTATCATAGTAGCTTCCAT
*
194781 TGCTCTCATA
1 TGCTATCATA
194791 ATCATCATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.38
Consensus pattern (21 bp):
TGCTATCATAGTAGCTTCCAT
Left flanking sequence: Indices 194239 -- 194738
AAACTCGGATATGACGTTCAACTTTTATGCCTTACCTGACAGCGAGCGATACTTGATGCTCTTCT
TCGTTCCAATGGTAGCTTTCTTTAGCTGACATCCTACGTTTAGGCTTGAATGTAGCGTAACACCC
ATGTGTTATCATAATGGCGATATAACGCTCAATTCTAGCCATAGAATCAAGAGCTCGATAAATCA
AGGTAATTTGTGAGCCCTTCTAGTAGCTTCTCGTTTCTCACGCTCTGCCATTGCCATAGACCTCA
GACTCAACAACATTGATCTCGGTCATGGGTCATCTAGGTCTTTGATTCGTTCTTGCACCCGCTCC
CGGGCATCAGAAGTAATAGAAGAAGTGTTGTTGCCACCAGAGCTCTCATTGCCAGAGCTAGAGGT
AGGCTCACAAGTGCTAGTTTCATCAGTGCTTTCTCTTTTTCTTTCTTCTCTTTCACTTCTAGAAT
CATTTCTATCCCGCTCCCGCGCATCAATGGAATTAGTAGAAGAAG
Right flanking sequence: Indices 194791 -- 195290
ATCATCATACGTAGGCAGGAAGTCAGCTAGCGATTCGAGTCTTTCGTCTCCATACATTTCTTTTC
TTTCCATGTATTTAGAGTAAGCGACGTTGACACATGCTATACGATATTTGTACAACATCAAAAGT
CTAAGGTTAGCGTTATCTCCCTTCTCTGCTTCTCTTTTTAGCTCCATATGGGTTCTCTCTTTCCA
TACCCATACGTGTTGTGCTTTATCTTTATCCTTGAATTTCTCAAGAAGTATCTGAACGTCTGGAT
CATAGGGATAAGGAATATCAGCAGAATAATCCCCAGCATACCAGTTGGATAGTGTAATATCTTCT
ACTCTTGTCTTACCTTCCCTGATGTCCTTCTGGGTCTTAAAGATAGCATAGGCCCGGTTTGCACA
TCTGATGTCAGATTTCCAATGCTTGATTAATCTAGGGTTTACTACATCGTCTGAATTGAGTTTGC
TTAGCATTTCTTCTGCTTTTGCTTTTCGATCCCAGATCTCTTTCA
Found at i:239001 original size:12 final size:12
Alignment explanation
Indices: 238984--239009 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
238974 ATCAAGTCCG
238984 AAGAGGGGAAGA
1 AAGAGGGGAAGA
238996 AAGAGGGGAAGA
1 AAGAGGGGAAGA
239008 AA
1 AA
239010 AAGTTTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (12 bp):
AAGAGGGGAAGA
Left flanking sequence: Indices 238484 -- 238983
GTCCACTAATTTGAAATCTCTGTTTTTGTATTCTCTAGGAATCCGGGTCTGGATCAATATTCATT
TTTCAGTAGCAGGTGTCTATGGGAAAACAATTATAAAATTACCAGGGCGCCTCTATATTAATAGA
TGCGCTCTGATCAGAGCTGCACTGCTCTTCTTTGTTGCTTTTCTTTTCTACTTCATGTTGTACCT
AGTCTTTATGACAGGAGGAGGGGGTGAACTGTGGAAAGCAGTTAGCCAGTTTTTGGGGGATGCGG
GGGGAAGTAATAGTACCCCCCCCAATCCGGGCCACGATCCTGCGGGATCCTCAGACCTGCTCGTG
GCTGCGGGCGCGGGGAACCAACCCCAAGAGGGGGAAATGCTAGTAATTCCTTCTCCCGAAATCTC
TCAGGGAGAATTGCTTGGGGAAGCGGATGCAGCACCTGCTGGCCCAGAAGCGGATGCAGTATCCG
AGGAGGATGAGGATATAGAGACATGGCTCGACAGGATCAAGTCCG
Right flanking sequence: Indices 239010 -- 239509
AAGTTTCAAAGCCCCTTTATTTCGAACTTGAATAAGATTATCAACCTGCCGTCGAAGGGCAGGCG
TTTTCGGCCGGGCCAGCCGGAACTTGACTCAGCAGATCTTTTTCTTCTAAATTTTTGGAAGAAGA
AGATCTTAAAGCTCCTTTGTAGCAAGGAGTTACGCTCCCCCATCAAGGTAAGCAAGGGGCAATGG
GAGGCCGCATTGGAAAAGCTCCTAGAGGGAAAGGGCCCTTATGATTGGTTAGCTGCCGGGAAGGC
CCTAGGGAGAGAAAGGGAAGGGTGCCCTTTCTTTCGTCGATTAGTGGATGAGGTGGAAAGAATGA
AATTATGCCAAAAAAGAAAAAAAGGGTAAACGAAAACTAAAACGGAGGCGCCCGAGAAAGAGCCG
TAAAGGCAAGGCGCTTGAAACAGCAATTCCCCCGCCCAGTTCTGCTTGCCTAGATCTCTTATTTC
CCGCGTAGTCCGTCGGTCAAACCAACGATTCTCTTCTCACAAAGT
Found at i:245056 original size:11 final size:11
Alignment explanation
Indices: 245040--245065 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
245030 TTCTCTAATG
245040 GTGCAAAAGAA
1 GTGCAAAAGAA
245051 GTGCAAAAGAA
1 GTGCAAAAGAA
245062 GTGC
1 GTGC
245066 TAGCAAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.12, G:0.31, T:0.12
Consensus pattern (11 bp):
GTGCAAAAGAA
Left flanking sequence: Indices 244540 -- 245039
CCACCTCTTGTTTCTGTAAGTATGAGTGCACTGAGCCTTTCTAGTGAGCTAGAGAGCACAATTGA
GAAAATCTCTAGTGAGAGGCAGGCTCCTGACCTGGCAGAAGGAGAGGTAGATAAGAGTCAGAACC
TAGAGGTTCCTTGTGAGGCTGAGAAATTGACTATTGAAAGTCAATGTAAGGGGGAGGTGAGGAAT
GATGAGATCATTCAAGAAACATAAGGAGAGTTAGGTGTTACTAGTTCTGTTCTTGTTTCAGGAAA
TCATACTGTAAACTCTGACAGCTCAAGTTCTGATGATGAAGAAGCTTATTCTGATACTGGCTATG
ACTCTGATAAAGCTAAAATATGCTATAAAGATCAAAAATGGCCAAAAGATGCCAAGCATGTAGAA
GAAGAATTTGGTTTGAGTCTTGATAATTTGAAGCTGGTTATTGATTTTCAATATCAAGATGTCAA
GGATGGTGGCATGAAGGCTGAAAAGAAAGAAGAAGTTCTCTAATG
Right flanking sequence: Indices 245066 -- 245565
TAGCAAGTGAGTAGACCTATATACGGTATACGAACGATAGAAGAAAGAGTGTATAGAATACAATA
GAATTTGGAAGAAGTATAGAACTCTAGTTCTTTTCTGGTCGAGCTAGTCTTCCGCCTCTCCTGTT
AGTCGAGTTGCTTTTAGCTATGGGAAGGTCTTAAACGTTTTTGCCCGTATTGTTGCCATTGGAAG
AATGATGTACTCCTACAACTCTCTCTTCAAACTCTTCTAGATCTTGGTTTGCTTTCTAGAGCGCG
AAAAGAAGCAACTAAAGAGAGTTATGCCCAGGCATAAGCAATCACGCGCTGGGGTTCCTAAGCGC
AGCGTAAACAGCCATTCCTGAAGCAACTAAATAGGGTTCCTCGCCAGGTTCGATTTAGCTATGAA
AGCCAGAAACTATTCAAAAGAAGCCTTTCTTGAGGCATAGAAATAGGGGTTTGAGCGTGGTATAG
GGAAATCATACACAGATCTCCGAAACATTGGTTTTTCGCCCGCGT
Found at i:250036 original size:43 final size:43
Alignment explanation
Indices: 249975--250056 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
249965 GTTTTTCGCG
249975 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGT
1 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGT
250018 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAA
1 GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAA
250057 GAAAAGTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.17, C:0.43, G:0.21, T:0.20
Consensus pattern (43 bp):
GGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGT
Left flanking sequence: Indices 249475 -- 249974
AAGACAAAGAACCACCATACATGACATGAAAATAAACTACTTTGTGCGTCTACAGACACTTATTT
AAACCTTCTAGAGTCGACGGACTCCTCTAGTCTCCCCCGCCGTTGGCACGATTTATCGCAGCTTG
CACAATAAGTGCTTGCTGCTCTTGTACCAGCGCCCTCCTCCGGTCTTCCAGACCGCGAATGCGGT
CCCTTATTTGTTGCATAGCGTCTGCTATCATCTCAGGATCGATAGCAGGCAGATGCTCCCAGAAA
AGTGCTAGCCTGTGCTCCCAGTAGAGCTTTGCTGCCTCCACTTGTGCGATTTCATTTGAAATAAT
AGAAAGTCTGTCAATTCCTCCATTGGGATCCATGGCTACTTACTTTCTTCTACTAAGTGCCCTTT
GCTTTGTGCCTAATAGAGACTGAAAGAAGCTTCTATTTATAGGCGTTGGAGGCCCTTAACTCTTT
CCACCAACTAAAATTATATCAATAGTTGAAGTTTTGTTTTTCGCG
Right flanking sequence: Indices 250057 -- 250556
GAAAAGTAAAGAAAAGGGCGCAATAATCGAGCGTAATAGGACAATAATCGAGCGGAATAGGCCAA
TAATCGAGCGAAGCGTCAGATAGTACTCCCCTTTCTCTAATAATAAGGCACCAAGGCCCCTTTCA
TAAGAGATAGAACAATCCCTCACTCGACACCTCAAAGCTGACCAGTACAAAAACACTGTGATCCG
TCCTCGTTTACGTACCCCCACTTGCTTCTAGTTGTCTTTTACTGGCTTATTTCCAGCTACATGAT
GGGATAAAAGAAGAGACCAGTATAGAAATGGGTAAAAAGAGTAGTGAGATGAAAGATAAGGATGC
TGTAAGATGTTTAATGTATGACAAGTTCATGAATATATTCCTAAATAAAGTGGAGATGCATATGA
AATCTAAAAAATGGAAAACTAAGGCTCATAATAAGAATTTTTTTAAAAATGTTAAAAGATGGTTA
TTATGATTGTAAAACGGATAAAGATTTCATTTCTATGAATTACAG
Found at i:250103 original size:21 final size:21
Alignment explanation
Indices: 250077--250131 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
250067 GAAAAGGGCG
*
250077 CAATAATCGAGCGTAATAGGA
1 CAATAATCGAGCGGAATAGGA
*
250098 CAATAATCGAGCGGAATAGGC
1 CAATAATCGAGCGGAATAGGA
250119 CAATAATCGAGCG
1 CAATAATCGAGCG
250132 AAGCGTCAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.16
Consensus pattern (21 bp):
CAATAATCGAGCGGAATAGGA
Left flanking sequence: Indices 249577 -- 250076
CGCCGTTGGCACGATTTATCGCAGCTTGCACAATAAGTGCTTGCTGCTCTTGTACCAGCGCCCTC
CTCCGGTCTTCCAGACCGCGAATGCGGTCCCTTATTTGTTGCATAGCGTCTGCTATCATCTCAGG
ATCGATAGCAGGCAGATGCTCCCAGAAAAGTGCTAGCCTGTGCTCCCAGTAGAGCTTTGCTGCCT
CCACTTGTGCGATTTCATTTGAAATAATAGAAAGTCTGTCAATTCCTCCATTGGGATCCATGGCT
ACTTACTTTCTTCTACTAAGTGCCCTTTGCTTTGTGCCTAATAGAGACTGAAAGAAGCTTCTATT
TATAGGCGTTGGAGGCCCTTAACTCTTTCCACCAACTAAAATTATATCAATAGTTGAAGTTTTGT
TTTTCGCGGGTATCGCCACGCGTCTTAACCCCGTCCCCGGCCCTAAATCGTGGTATCGCCACGCG
TCTTAACCCCGTCCCCGGCCCTAAAGAAAAGTAAAGAAAAGGGCG
Right flanking sequence: Indices 250132 -- 250631
AAGCGTCAGATAGTACTCCCCTTTCTCTAATAATAAGGCACCAAGGCCCCTTTCATAAGAGATAG
AACAATCCCTCACTCGACACCTCAAAGCTGACCAGTACAAAAACACTGTGATCCGTCCTCGTTTA
CGTACCCCCACTTGCTTCTAGTTGTCTTTTACTGGCTTATTTCCAGCTACATGATGGGATAAAAG
AAGAGACCAGTATAGAAATGGGTAAAAAGAGTAGTGAGATGAAAGATAAGGATGCTGTAAGATGT
TTAATGTATGACAAGTTCATGAATATATTCCTAAATAAAGTGGAGATGCATATGAAATCTAAAAA
ATGGAAAACTAAGGCTCATAATAAGAATTTTTTTAAAAATGTTAAAAGATGGTTATTATGATTGT
AAAACGGATAAAGATTTCATTTCTATGAATTACAGATTCAAATCGAAAGTTATACAAGGGAGTTT
GAAGGAAAAGAGACTAAGGCTTTTGAGAAATATCCAGCAATGGTT
Found at i:257939 original size:12 final size:12
Alignment explanation
Indices: 257922--257963 Score: 84
Period size: 12 Copynumber: 3.5 Consensus size: 12
257912 TGCGAGGTTC
257922 ATCCTTAGATGT
1 ATCCTTAGATGT
257934 ATCCTTAGATGT
1 ATCCTTAGATGT
257946 ATCCTTAGATGT
1 ATCCTTAGATGT
257958 ATCCTT
1 ATCCTT
257964 CACAAAAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (12 bp):
ATCCTTAGATGT
Left flanking sequence: Indices 257422 -- 257921
CCAAAAGACATCACAAGGAACTCATAATGCCCATATCGAGTGCGAAATGCTGTCTTCGGAATATC
CTCATCTCTTACTCGTAACTGGTGGTAACCCGATCTCAAATCTATCTTCGAAAAGTACTTCGCCC
CTTGCAACTGATCGAACAAGTCATCAATGCGTGGCAAAGGATATCTGTTTCTGACAGTCACCTTA
TTCAACTCCCTGTAGTCAACACATAATCTCATAGACCCGTCCTTTTTCTTCACAAACAACACCGG
AGCACCCCATGGAGACACACTCGGCCTAATAAATCCCTTATCCAACAAGTCTTGCAGCTGCTCTT
TCAATTCTTGCAACTCCAATGGTGCCATCCTGTACGGCGCCTTAGAAATAGGTTCGGAACCTGGA
ACAAGTTCAATAGTAAACTCTACTTCTCGCTGTGGTGGCAAACCTGGTAGCTCTTCAGGAAAGAC
ATCTGCAAACTCATTCACAACTGGATAATCCTCAATGCGAGGTTC
Right flanking sequence: Indices 257964 -- 258463
CACAAAAGCAAGATAGCCATCACAGCCCTTAGACAAAAGTTTATTCGCCTTTAAAGCTGAAATAA
TTTTAACCACTCCTTTTGGTTGAGACCCCTGAAACAAAAATTATGGTTGATTCACATCTCCAAAG
ATCACACGTTTTCCCAAACAGTCAATTGTTGCACAATGCTCACTCAGCCAATCCATACCCAGAAT
AATGTCAAAGTCATGCATCATCATCGGAAGCAAGTTGACCTTACAATTCCTATCTCCCACAACTA
TCGGACACCCTCGGTACTCATCAGAAATAATAACAGAATTACCCATTGGGGTAGCAATTAACATA
TGAGGATCAAGTAATGAAGGCAAAACTCCAAGATAACGAACAAATGATAAGGATACAACAGAATG
AGTCGAACCAGTATCAAATAACACATAAGCTTCACGTTTACCCACAAGAAGTGTTCCAGAAAACG
GTACCTGAATTAGCAATTAGCTGCCGCCTGATTAGCGGTCAATGC
Found at i:278606 original size:38 final size:38
Alignment explanation
Indices: 278555--278635 Score: 162
Period size: 38 Copynumber: 2.1 Consensus size: 38
278545 CCACCTCTCT
278555 AACTCTAGAAAGCTATATCTCAACATAACCCACTATCA
1 AACTCTAGAAAGCTATATCTCAACATAACCCACTATCA
278593 AACTCTAGAAAGCTATATCTCAACATAACCCACTATCA
1 AACTCTAGAAAGCTATATCTCAACATAACCCACTATCA
278631 AACTC
1 AACTC
278636 ATCCGCTTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.42, C:0.30, G:0.05, T:0.23
Consensus pattern (38 bp):
AACTCTAGAAAGCTATATCTCAACATAACCCACTATCA
Left flanking sequence: Indices 278055 -- 278554
GGCCCTCACCTTCGGTAACATCCTTAGCCCGGAACAAGAGCAGGGAAGAGATTCTTGAAAAGAGA
ATGCGCCTCACGACCATCATAACCTAACTCCAGGACTGCTACGGGCACTGATCCTTCTATTCAAA
GTAAAAGTTTCTCCTGTTGAATAGAAGTGCACGAGAGCAGGATACAAATGATTCTAGAAGAGAAG
ATAAGACTGATTCTACTACACCTTTTAAGCGGATCAAAGACCTAGATGACCCGTAGACAACATCA
TATACGCGGTAAACTAGCGTAATGCTAGCACTTAACCTTGCCGAGAGATTGGCACTCTTCTTCTC
GACGAGAAGATTGATAGTCATGTGCCCTAGTAGAGAGCTGATTCGTCTGTTCGTTTAGGAGCTAT
AGACTGAGCTTCTACTTCTTCGCGTCAAGCTTGTTCGCCTGCTTGAGAATAGGTCTTGCAGAGCC
TTTTGTGTACATGTTCAGCCGCCCAATCAGCATTTCCACCTCTCT
Right flanking sequence: Indices 278636 -- 279135
ATCCGCTTGTACATTCTTGGTGTCATACTCACTCGTAAATTATTGGTGTCATAATTTTTCTATTT
TCAGGTGTGATCGGTCTAATCCTTGGAATAATTAGTTCTCTTTGAAATAATTAGGATTTTCTCTT
TGAACTCGTCCCGGAATGGGCATTATGGCAAAGAACAAGAAGAAGACAAAAGGAGAAATTTGTCC
AATAGTCACAAATGGTGCCTCCACAGGTTGACATCCGATCCAACCTAGTAGTAAGCGATCCGCCA
AAAACAACAAATATATTATATGGTAAATCGGGCGAAATTTTGCACTACGTACATACATACTTTGA
TTTAAAAAGGGTAAAGCCAACAGACATATAAAAACTGGTGCTATTGCGGCTACACCTCCCGCTTT
GTCAGGTATACTACGAAGAATGGCATGGATCGGTAGGAAATACCATTCCGGCACAATATGAGGCG
GGGTGGGCATCGGATTAGCAGGTATATAATTGTCGGGATGCCCCA
Found at i:280632 original size:12 final size:12
Alignment explanation
Indices: 280615--280640 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
280605 TTTGAAACTT
280615 TTTCTTCCCCTC
1 TTTCTTCCCCTC
280627 TTTCTTCCCCTC
1 TTTCTTCCCCTC
280639 TT
1 TT
280641 CGGACTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (12 bp):
TTTCTTCCCCTC
Left flanking sequence: Indices 280115 -- 280614
ACTTTGTGAGAAGAGAATCGTTGGTTTGACCGACGGACTACGCGGGAAATAAGAGATCTAGGCAA
GCAGAACTGGGCGGGGGAATTGCTGTTTCAAGCGCCTTGCCTTTACGGCTCTTTCTCGGGCGCCT
CCGTTTTAGTTTTCGTTTACCCTTTTTTTCTTTTTTGGCATAATTTCATTCTTTCCACCTCATCC
ACTAATCGACGAAAGAAAGGGCACCCTTCCCTTTCTCTCCCTAGGGCCTTCCCGGCAGCTAACCA
ATCATAAGGGCCCTTTCCCTCTAGGAGCTTTTCCAATGCGGCCTCCCATTGCCCCTTGCTTACCT
TGATGGGGGAGCGTAACTCCTTGCTACAAAGGAGCTTTAAGATCTTCTTCTTCCAAAAATTTAGA
AGAAAAAGATCTGCTGAGTCAAGTTCCGGCTGGCCCGGCCGAAAACGCCTGCCCTTCGACGGCAG
GTTGATAATCTTATTCAAGTTCGAAATAAAGGGGCTTTGAAACTT
Right flanking sequence: Indices 280641 -- 281140
CGGACTTGATCCTGTCGAGCCATGTCTCTATATCCTCATCCTCCTCGGATACTGCATCCGCTTCT
GGGCCAGCAGGTGCTGCATCCGCTTCCCCAAGCAATTCTCCCTGAGAGATTTCGGGAGAAGGAAT
TACTAGCATTTCCCCCTCTTGGGGTTGGTTCCCCGCGCCCGCAGCCACGAGCAGGTCTGAGGATC
CCGCAGGATCGTGGCCCGGATTGGGGGGGGTACTATTACTTCCCCCCGCATCCCCCAAAAACTGG
CTAACTGCTTTCCACAGTTCACCCCCTCCTCCTGTCATAAAGACTAGGTACAACATGAAGTAGAA
AAGAAAAGCAACAAAGAAGAGCAGTGCAGCTCTGATCAGAGCGCATCTATTAATATAGAGGCGCC
CTGGTAATTTTATAATTGTTTTCCCATAGACACCTGCTACTGAAAAATGAATATTGATCCAGACC
CGGATTCCTAGAGAATACAAAAACAGAGATTTCAAATTAGTGGAC
Found at i:286836 original size:20 final size:20
Alignment explanation
Indices: 286811--286851 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
286801 TGCGACCCCC
286811 CCTGAGTAACAGGAATCACA
1 CCTGAGTAACAGGAATCACA
286831 CCTGAGTAACAGGAATCACA
1 CCTGAGTAACAGGAATCACA
286851 C
1 C
286852 AAGGGTAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.27, G:0.20, T:0.15
Consensus pattern (20 bp):
CCTGAGTAACAGGAATCACA
Left flanking sequence: Indices 286311 -- 286810
ATGGACTACTTGGGATCAGCAGAATTCTAAAACTGCGGAACCAACTGGTTTCACACCAGGAGAAC
AACATCCGGAGCAAGGACCCCAATAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCACCGGGGT
ATCCTATATGTACTCCAGTTTATTCGAAGTATCCCAATGGTGTAACTTCGCCTACTTAGTGGAAA
AAAAAATTGGAAAAAGCAGGCTGCTCTTTAAGAAGATTCTCTCTTGTTTCGGAGAAATAAGTGGC
TCACGAGGAATGGAAAGAAACATATTCTATTTGATCTCGAAGTCCTCATATAGCACTTCTTCCAA
TCCTGGATGGGGGATCACTTGTAGGAATGACATAACGCTAATCCATGTTCCACACGGCCAAAAAA
GCTTCGGTTTTTAATCACATTATTTTATTACTTGATAGAACTACAAGGGTCTGATTCTTCGAAAT
AAGAGGATATGTAGGTAGTTCGGTTTCTAGCCGGATGCGACCCCC
Right flanking sequence: Indices 286852 -- 287351
AAGGGTAGATTAGAAACCTCTGGTAAAATGCCCGCCCGTAACCCAGCAGATAAAGTACATTACAT
AGTCCGTTTTAGGGATTGGCGATTTACCCATTCAGTGACTTTTGGCATTGGACGTTCCCAAAATG
GGTACTGCCGGGTCGGGTGAATTCAATAATAGACGCCTGTTGGCATTCCAGCCTTCCTTCGCTTT
CAGGGCCTATCCGAATCCAGTACTTCTTTTCTTGGTCGTGAATATATGAACTGGTTGTTCGCTGT
TCAAGAATTCTTGTTTAGGCAGTTCATACCATCCATACATAGTGTTTTGATCTAATATTTCAATT
CTTCCGTGTTTCAGCAGTAGCCTATTGTTCCAGGGAGCTAAGGTCCAAAATATGGAAGAAACAAG
CGTTTCCGCGACTCTACCACCCAGTAAATTATGTTCCACTTAATCCCCCTCTTTCATGGCCACAT
AACTTTCCGGCTAAGGAATGGGAAATCTTTCTCCTGTTCCATGAA
Found at i:367316 original size:23 final size:23
Alignment explanation
Indices: 367286--367332 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
367276 CTGTGAGGTT
367286 ACGTAGTATCTCGACTGTAAGGA
1 ACGTAGTATCTCGACTGTAAGGA
367309 ACGTAGTATCTCGACTGTAAGGA
1 ACGTAGTATCTCGACTGTAAGGA
367332 A
1 A
367333 GAGGAAGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (23 bp):
ACGTAGTATCTCGACTGTAAGGA
Left flanking sequence: Indices 366786 -- 367285
ATAAATAAAATTGAAACAAGATAAAATCGTATATCAAAACGACTTCTGGCATCACCGAAAGGATC
GAAACCACATTCGTAGGCCGACAATTTGTCTGGATAGGTCGAACTATTGGAAGCAAATAGAAAAG
GAACACCAAGTGGGATCAAAGAAACTAGCGGACTGATCACTAAATAGATACAAATAGGTGCAAAT
TCTGACATCACCACAGCCCGCTTGGTTCTATCGCTCCTTGCTCGCGGAGCGGCATACCGGAAAAA
AAGAAGGATTCAATCCAGCCCATAGGTTCTCCCTACAGCTACCTTGTTACGACTTCACCCCAATT
CTTAGATGCGGCGAAATCATTTGTTTCAGAGTCCACTGTCTTTGTCTTTGTTTGAACACCAACCC
AAGACGAAAACAGTTACTTATCGCATTTCAAGCAAAAAGCGTGGTTTCTTATCTAAGAGATTTCT
TATGCACCTACGGTCTTATAGAAAGAGTATATAAGCTGTGAGGTT
Right flanking sequence: Indices 367333 -- 367832
GAGGAAGAGGCTTCGCCGACTGAGAACTAGAGCTCAGGGTAATGGCTAGTTTAGAGTCCTGTTCT
ATGGCAAGTGAGTAACCACGTAAGAAATGGTATACGAACGATAAAAGCAAGAATAGGAAGCCTAC
GATCTTTGATCTGCCATACATAGTATACCCGTTGGAAGAGTTCGAATTCTAGCTCTTTCGCATCA
TACGGCTGGATCTGGTTTCTTTGCAGATGAATGATATGTACTCCAGGAACACAAAAGAGATATTT
CACATACGAGGTGCTTTTTGACTTATTCATGAATTCCGGTTTCTTTGCACGTGAGACAGGTCCAC
AGGTCAAGAGATATTTGCAGATCTGTTCCAATGCATTCTTTTTGATCTTGTACCCTAGGTTTAGG
CTTGAATGTAACGATAACACCTATAAAGAAAAGGAGTCCCTTTTGCGCGATAGAGGCTAAATAAG
TTGGGCTTGTTGTCTACTCGAGTGTATCGATAAACCAGTCATCTC
Done.