Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: JF973314
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 104239
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Found at i:33098 original size:14 final size:14
Alignment explanation
Indices: 33079--33106 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
33069 TCGGTTCTGT
33079 TTGATAGTAACACA
1 TTGATAGTAACACA
33093 TTGATAGTAACACA
1 TTGATAGTAACACA
33107 AAGAAGCGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
TTGATAGTAACACA
Left flanking sequence: Indices 32579 -- 33078
GGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCTACACACGTGCTACA
ATGGCAATTACAATAGGAAGCGAGGCTTGAAGGCGGAGCGAATCCAGAAAGATAGCCTTAGTTCG
GATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGC
GGTGAATATGTACTCAGGCCCTGTACACACCGCCCGTCACACCATGGGAATTGGCTTCGCCCGAA
GCATCAAACCAAGGATCACCCATTCTTTCAGTGTTCTACGCCGTTGGTGAGTGTGGTCTACCAGA
GGAATTGGTGGTCTGATGTGGGATACCAAGGTGGGGCCTTTGACTGAGGTGAAGTCGTAACAAGG
TAGCCGTAGGGGAACCTGTGGCTGGATTGACTCCTTTTTTTCGACAAAAGAGAGAAAAAAAAAGA
CTCCAAAAAAGAAACATCTATCTAGTTTCTGTCGTTCGGTTCTGT
Right flanking sequence: Indices 33107 -- 33606
AAGAAGCGGAAAAAAAAGAGTAGATACGCCCTGTGCTCTTCATTCTTTGGACTAGGATTGCATGG
CCCGAAGCAGCATAATGCGATAGTAGCAAAGACTTGAGTGAATTTTTGGTCTATGTCAGTTAGTG
AGAGCCTACCTCGCAGCCTTTCCAATTATGCCTGTGAATGCCCTTACTATTACACAATAACGGCT
TCAGTCGCTATTATGAATATCACGTTGGCGCAGGGCGCTCTAATAATCTACTCCGTTTGAACTTC
ATACATAAACAGTTACTTCTATCGTGTTGCCCCATCGGGGCCAGGTTAAAGGGCGCATGAGGCGA
ATTATCATCCAACAGCCAGGGAAATGAGCGGCAGATTGGTAGAACAGCGGATTAATAATTCGCAT
GTCGGAATAGTTTAGTCGGTTAGAACAGCGGGATCATAATTCGCACACGGGGGTTCAAATCCCTC
TTCCGATAGGAACTTTCGGATAAGAATTGAACCTACGGGAGGCAA
Found at i:33778 original size:25 final size:25
Alignment explanation
Indices: 33750--33799 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
33740 GATAATTCAT
33750 TAAAATACATAGAGACTCAAATTGC
1 TAAAATACATAGAGACTCAAATTGC
33775 TAAAATACATAGAGACTCAAATTGC
1 TAAAATACATAGAGACTCAAATTGC
33800 ATAGAACGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (25 bp):
TAAAATACATAGAGACTCAAATTGC
Left flanking sequence: Indices 33250 -- 33749
CAGCCTTTCCAATTATGCCTGTGAATGCCCTTACTATTACACAATAACGGCTTCAGTCGCTATTA
TGAATATCACGTTGGCGCAGGGCGCTCTAATAATCTACTCCGTTTGAACTTCATACATAAACAGT
TACTTCTATCGTGTTGCCCCATCGGGGCCAGGTTAAAGGGCGCATGAGGCGAATTATCATCCAAC
AGCCAGGGAAATGAGCGGCAGATTGGTAGAACAGCGGATTAATAATTCGCATGTCGGAATAGTTT
AGTCGGTTAGAACAGCGGGATCATAATTCGCACACGGGGGTTCAAATCCCTCTTCCGATAGGAAC
TTTCGGATAAGAATTGAACCTACGGGAGGCAAAAAAAAGATATATATATCGTTTTTTTGCTGGTC
ACTAACCTTATCCTAAATCTCCTTCTTCTATCACAGAACACGGTAAAGAAAGATTTACCATGGAT
AACTAGAAATGCAACATAATCAATCAATCATCATAGATAATTCAT
Right flanking sequence: Indices 33800 -- 34299
ATAGAACGGCGGCATCACCTTTAGGTTTCATTCTAGATCTTGTTCACGAACGTTGTGGCTATACT
CTTATGTTCTATCAACAAAGTAGAATTAGCCGTTATGCTAGTAGCTTATGAATCATCATAGATAA
TTCATTGTTGTAGCTCCACAAATGGGAACGCGCGCGAATGGTTCGTTGCTCCGGCTTGCTGCAGG
AGAAATTGAAGTAGGTCTACATGGCTTGCTGAAGAGAAGCGGTATCACCGGCGGCAAGTAGCCGA
CGCGTGGCCTGCGGCATCCATTATTTATGTGGAGCTAGAGGGGCGCTTCTTAGAACAACCATAAC
AACCATAAGGGCGCTTCTTAGAACAACCATGAACAACCATAAGGCCGCAGGGCGCAGCAAATCGA
AATAAAGTCAAGTTGGCGATGGCGGCGATTCTCGCCCTGTGATTGGCGGCGCTGGCGGCGATTCT
CGCCCTGTGATTATTCTCGCCGAAGAGCACCTGTGTATTCGGCGC
Found at i:34142 original size:33 final size:34
Alignment explanation
Indices: 34100--34168 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 34
34090 GGAGCTAGAG
34100 GGGCGCTTCTTAGAACAACCAT-AACAACCATAA
1 GGGCGCTTCTTAGAACAACCATGAACAACCATAA
34133 GGGCGCTTCTTAGAACAACCATGAACAACCATAA
1 GGGCGCTTCTTAGAACAACCATGAACAACCATAA
34167 GG
1 GG
34169 CCGCAGGGCG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 22 0.63
34 13 0.37
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (34 bp):
GGGCGCTTCTTAGAACAACCATGAACAACCATAA
Left flanking sequence: Indices 33600 -- 34099
GAGGCAAAAAAAAGATATATATATCGTTTTTTTGCTGGTCACTAACCTTATCCTAAATCTCCTTC
TTCTATCACAGAACACGGTAAAGAAAGATTTACCATGGATAACTAGAAATGCAACATAATCAATC
AATCATCATAGATAATTCATTAAAATACATAGAGACTCAAATTGCTAAAATACATAGAGACTCAA
ATTGCATAGAACGGCGGCATCACCTTTAGGTTTCATTCTAGATCTTGTTCACGAACGTTGTGGCT
ATACTCTTATGTTCTATCAACAAAGTAGAATTAGCCGTTATGCTAGTAGCTTATGAATCATCATA
GATAATTCATTGTTGTAGCTCCACAAATGGGAACGCGCGCGAATGGTTCGTTGCTCCGGCTTGCT
GCAGGAGAAATTGAAGTAGGTCTACATGGCTTGCTGAAGAGAAGCGGTATCACCGGCGGCAAGTA
GCCGACGCGTGGCCTGCGGCATCCATTATTTATGTGGAGCTAGAG
Right flanking sequence: Indices 34169 -- 34668
CCGCAGGGCGCAGCAAATCGAAATAAAGTCAAGTTGGCGATGGCGGCGATTCTCGCCCTGTGATT
GGCGGCGCTGGCGGCGATTCTCGCCCTGTGATTATTCTCGCCGAAGAGCACCTGTGTATTCGGCG
CTGGCGGCGCTTTGCGCCCTTGTTGACTCTATTCATCAATTATTCTAAAACGCGTTACAAAGTGA
TGAACAATCAATCGCGGGGCCGAAGGTTCTAGGGGACTAAGCTCGCCAAATAGTACTATGCAACA
CTCGGCGCCTACGGATGGATCATCATAGAGACTCGCAAGAAAAAAATGACATATTTCTAATAAAG
AACTCTACTATAATATAATGAATCATTTTCGATGAATCATCATATATAATAGACTAAAAATCCAC
CGCTACGCGCTTCCGGGCACTACCCTTGTTGACTCTATCCATCAATCGCTACGCGCTTCCGGGCA
CTATGGTAAGACATGAAAACACCCGATCCCATTCCGACCTCGAAA
Found at i:34247 original size:33 final size:33
Alignment explanation
Indices: 34204--34266 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
34194 AAGTCAAGTT
34204 GGCGATGGCGGCGATTCTCGCCCTGTGATTGGC
1 GGCGATGGCGGCGATTCTCGCCCTGTGATTGGC
*
34237 GGCGCTGGCGGCGATTCTCGCCCTGTGATT
1 GGCGATGGCGGCGATTCTCGCCCTGTGATT
34267 ATTCTCGCCG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.08, C:0.29, G:0.38, T:0.25
Consensus pattern (33 bp):
GGCGATGGCGGCGATTCTCGCCCTGTGATTGGC
Left flanking sequence: Indices 33704 -- 34203
TAACTAGAAATGCAACATAATCAATCAATCATCATAGATAATTCATTAAAATACATAGAGACTCA
AATTGCTAAAATACATAGAGACTCAAATTGCATAGAACGGCGGCATCACCTTTAGGTTTCATTCT
AGATCTTGTTCACGAACGTTGTGGCTATACTCTTATGTTCTATCAACAAAGTAGAATTAGCCGTT
ATGCTAGTAGCTTATGAATCATCATAGATAATTCATTGTTGTAGCTCCACAAATGGGAACGCGCG
CGAATGGTTCGTTGCTCCGGCTTGCTGCAGGAGAAATTGAAGTAGGTCTACATGGCTTGCTGAAG
AGAAGCGGTATCACCGGCGGCAAGTAGCCGACGCGTGGCCTGCGGCATCCATTATTTATGTGGAG
CTAGAGGGGCGCTTCTTAGAACAACCATAACAACCATAAGGGCGCTTCTTAGAACAACCATGAAC
AACCATAAGGCCGCAGGGCGCAGCAAATCGAAATAAAGTCAAGTT
Right flanking sequence: Indices 34267 -- 34766
ATTCTCGCCGAAGAGCACCTGTGTATTCGGCGCTGGCGGCGCTTTGCGCCCTTGTTGACTCTATT
CATCAATTATTCTAAAACGCGTTACAAAGTGATGAACAATCAATCGCGGGGCCGAAGGTTCTAGG
GGACTAAGCTCGCCAAATAGTACTATGCAACACTCGGCGCCTACGGATGGATCATCATAGAGACT
CGCAAGAAAAAAATGACATATTTCTAATAAAGAACTCTACTATAATATAATGAATCATTTTCGAT
GAATCATCATATATAATAGACTAAAAATCCACCGCTACGCGCTTCCGGGCACTACCCTTGTTGAC
TCTATCCATCAATCGCTACGCGCTTCCGGGCACTATGGTAAGACATGAAAACACCCGATCCCATT
CCGACCTCGAAATGTGAAATCGTCTTACGCTATATGTACTGATTTATCAATTTCGGGAGACATGG
TCCAGGCCCGGACAACGTCCAATTTCAATTATAATAAAATAACTA
Found at i:41726 original size:17 final size:17
Alignment explanation
Indices: 41704--41767 Score: 82
Period size: 17 Copynumber: 4.0 Consensus size: 17
41694 AACCACTTAA
41704 TAACTAACACAAATAGT
1 TAACTAACACAAATAGT
41721 TAACTAACACAAATAGT
1 TAACTAACACAAATAGT
**
41738 TAACT---A-TTATAGT
1 TAACTAACACAAATAGT
41751 TAACTAACACAAATAGT
1 TAACTAACACAAATAGT
41768 AATGGATGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
16 1 0.03
17 27 0.69
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (17 bp):
TAACTAACACAAATAGT
Left flanking sequence: Indices 41204 -- 41703
TGAAAAAAAATCTCCATATATTCTTTTATTTCATTGTAGTGGCTTGACAAGTCGACAATGGCGAC
AACTCAAAAATCTATTGTGTGCCTTTCGAGGTAGAACTTTATTTCGACCAAATTACAAAAGAAAA
CTACCACGTAGAAACAAGCAAGGTGGTTTTATTGAGCAGCTTGCTTCTAGCGCAGGTCCCACTTG
TATCTTGTACTTAACTAAAGAAGCACCAGATAATACATGGTCACAGTTATTACCTTTGGCCTCAT
ACAACCAAAATCTAGTTTTATTATACGGACAACTTCAATCTACTTTAATCAATCATATGGATATA
GAAAAAGCGGCTAATTTAGAAATAACATCAGTATTTCAACAACTTTTTGAGCTCATTTTTTACCC
ATATAATTCTTTATGTTCTTGTTTGAACAAGCCAATTTATGCTCTACCCACTATACAAGAAAAGA
CGCAAGGAGGGTTGCTTAGTCACCAGAAGATAACCAACCACTTAA
Right flanking sequence: Indices 41768 -- 42267
AATGGATGATTTGTTTTTTTGGCGAATAACGGGATTTGAACCCGTGTTTTCAAATTCACAATCTG
ACACTTTCACCTATTAAGTTATACTCGCCCTTTTTTCCAATTCAGACATTAAAATACTCGCTATC
GGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCATTTTCACCAAGC
GAGTATGCTCACTATCGGACTTGAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTT
ACCATTTTCACCAAGTGAGCTTAGGCAAGCGAAGCGCAGAATCGAAACACAATAACACAATCTTT
TTCTTTAACACAATCCCCATCTTTCGTTTTCCTTTTGCCATTTCATTTTATAGACATCTCCGGCT
TATCCTGGCTCGGCTGAATCTGCGGCATTTTCTCAAATATTTGAAAAATCTATAGTCCTCTGTCT
CAAGGTGTGTAGAGACTCCTTTTTTATTGATTTATACTAATCTAT
Found at i:42028 original size:81 final size:81
Alignment explanation
Indices: 41893--42042 Score: 257
Period size: 81 Copynumber: 1.9 Consensus size: 81
41883 AAAATACTCG
*
41893 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCATTTTCAC
1 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
41958 CAAGCGAGTATGCTCA
66 CAAGCGAGTATGCTCA
* *
41974 CTATCGGACTT-GAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCA
1 CTATCGGA-TTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCA
42038 CCAAG
65 CCAAG
42043 TGAGCTTAGG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (81 bp):
CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
CAAGCGAGTATGCTCA
Left flanking sequence: Indices 41393 -- 41892
CACTTGTATCTTGTACTTAACTAAAGAAGCACCAGATAATACATGGTCACAGTTATTACCTTTGG
CCTCATACAACCAAAATCTAGTTTTATTATACGGACAACTTCAATCTACTTTAATCAATCATATG
GATATAGAAAAAGCGGCTAATTTAGAAATAACATCAGTATTTCAACAACTTTTTGAGCTCATTTT
TTACCCATATAATTCTTTATGTTCTTGTTTGAACAAGCCAATTTATGCTCTACCCACTATACAAG
AAAAGACGCAAGGAGGGTTGCTTAGTCACCAGAAGATAACCAACCACTTAATAACTAACACAAAT
AGTTAACTAACACAAATAGTTAACTATTATAGTTAACTAACACAAATAGTAATGGATGATTTGTT
TTTTTGGCGAATAACGGGATTTGAACCCGTGTTTTCAAATTCACAATCTGACACTTTCACCTATT
AAGTTATACTCGCCCTTTTTTCCAATTCAGACATTAAAATACTCG
Right flanking sequence: Indices 42043 -- 42542
TGAGCTTAGGCAAGCGAAGCGCAGAATCGAAACACAATAACACAATCTTTTTCTTTAACACAATC
CCCATCTTTCGTTTTCCTTTTGCCATTTCATTTTATAGACATCTCCGGCTTATCCTGGCTCGGCT
GAATCTGCGGCATTTTCTCAAATATTTGAAAAATCTATAGTCCTCTGTCTCAAGGTGTGTAGAGA
CTCCTTTTTTATTGATTTATACTAATCTATCTTAGATCCGAGATAGTGCCGAAAAAATGATTCAA
TTTGATCTAACCATGGTTGCCTCGGCAATGGCAATGACTTTTATACAATATGCAGAATACTCCAA
AACCTCTATTTAGAACTGAAAGAAGATAATGCTTTTTTATTTATGAGAAAATCATAAAGTGCAAA
GGTTAAAATTTTGAGCTTTGTTTTACGTAGTTTCGCCATCTATATAATAGAATATGGTAGAAAAG
AATAAGTTGGCGAGGAAGTAAAAATAGATATATATATCTATATAT
Found at i:42542 original size:12 final size:12
Alignment explanation
Indices: 42525--42550 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42515 GTAAAAATAG
42525 ATATATATATCT
1 ATATATATATCT
42537 ATATATATATCT
1 ATATATATATCT
42549 AT
1 AT
42551 TTTTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (12 bp):
ATATATATATCT
Left flanking sequence: Indices 42025 -- 42524
TTTACCATTTTCACCAAGTGAGCTTAGGCAAGCGAAGCGCAGAATCGAAACACAATAACACAATC
TTTTTCTTTAACACAATCCCCATCTTTCGTTTTCCTTTTGCCATTTCATTTTATAGACATCTCCG
GCTTATCCTGGCTCGGCTGAATCTGCGGCATTTTCTCAAATATTTGAAAAATCTATAGTCCTCTG
TCTCAAGGTGTGTAGAGACTCCTTTTTTATTGATTTATACTAATCTATCTTAGATCCGAGATAGT
GCCGAAAAAATGATTCAATTTGATCTAACCATGGTTGCCTCGGCAATGGCAATGACTTTTATACA
ATATGCAGAATACTCCAAAACCTCTATTTAGAACTGAAAGAAGATAATGCTTTTTTATTTATGAG
AAAATCATAAAGTGCAAAGGTTAAAATTTTGAGCTTTGTTTTACGTAGTTTCGCCATCTATATAA
TAGAATATGGTAGAAAAGAATAAGTTGGCGAGGAAGTAAAAATAG
Right flanking sequence: Indices 42551 -- 43050
TTTTTTTTTTATTCTGTGGTCTTGCAATTGTGTTTAAAGCTAAGGGCCCAGCCCCCTATTTCCCA
CCGTTTCCGTCAATCAAATAAAGGCTTCGTTTAGCCAGGGGTTATTCTTCTCCCCTGCTGAATTG
CTTCGCGAACGAAGTAGGCTAAAAAAATAAAGATTTTTTTTGTCCGCCTTATTCTCTTCTATCAT
TCAAATGGCCCTATGCGTTTTTGCCAAGCAAAATATTGATTGCATAAGCCATCGGCTTCCACAGA
GACCAATAAAGTGATAACAGCAGCGTAGCCAAGCTTGTTCCGCCCGCTGTGCGCAAAAAAAGAGT
TTTTTCCGGCACTTAGTAAAACAAAATTTTGACACTCCTTGCGTTGCGGATGGTAAGTGGATTAC
TAATAAAATGGAGTGATCCAAGATGACCTCTCTTTCAATTTCAATTATGTCATTATATAGTAATG
GCATGCGGCGAACTCTATTGGATGCGCCAAAAACTTGATTTGTTG
Found at i:49914 original size:22 final size:22
Alignment explanation
Indices: 49883--49926 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
49873 TCTCCTCGAC
49883 CGTGACTGAGACCGTCCAGTCA
1 CGTGACTGAGACCGTCCAGTCA
* *
49905 CGTGATTGAGGCCGTCCAGTCA
1 CGTGACTGAGACCGTCCAGTCA
49927 TAATAGCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (22 bp):
CGTGACTGAGACCGTCCAGTCA
Left flanking sequence: Indices 49383 -- 49882
AATGTTGATCGGCTTAACCATATTTATTACCATAATAGGTCCGTGGGATTTTATTTCTTTCTGGG
TAGATAATCGATTGTATTTTATTTACATAGTGAGTTTTCTATTTATTCATTTTGAAAACGACATT
AGCACGAACTAAAGGGGCATACTTCCTTATATAATACCATGAAACTTTGAGGGACGCAATGATAA
GCCAGTGCTACGCCCTTTTTTTGGCCCCGCCGAGAGGGAGGGCTGAGGCCCGACGAAGCCTAACA
AGCAAAAAAAATAGATTTTTTGGAGCCTAAGCTATGCTCTGCGGTCTAGCTATGATAAACCGTGG
GAAGAAAATGGATCCTCGAATAAAGCACGTTATTGCGGCAGGGTCTATGGGGAATCTGAAGAAGA
AGAAGAAGAAAGTAAAGATTGGAATGATAGAATAATGAATCGAAAGAGAGAAAATCAAAAAAACC
ATAAAACGAAAAAAAAAAATTTCGGCTTTTTTTATTCTCCTCGAC
Right flanking sequence: Indices 49927 -- 50426
TAATAGCAAGCCCTAGAGCATTGAACAAAGCGGTGAAAGGCGAAGCATGCAATTACATAGTATGC
GCGTATAAAAGCTCATCAAGTTATGCAATTATTGCGGGCTTTATGTATATAAGTGCAGGGGGTTA
TGATGATATACCCATAAGGCCTCTATGGCTGGAAAGCCGGGAGGAAATATGGACCCGCGGCCTGC
GAAGAAAGCTGCGTCCCCGGGATCTTCTGGAAAAAGAGTAAACATTTATGTTACAATTTTTAGCT
CCATTTTATTCCAATCTCAGTGGTCTCATTCTGTGTCCTTTATTAGGAAGCATCATTCTTTTCGT
TATCCCCGATCCCAGAATACGACTGATACGAAGTATTGGTTTGTGCACCTCTTTGATTACTTTCT
TATATTCCCTTCTTTTCTGGATACAATTTGATAATTCTACAGCCAAATTTCAATTCGTGGAAACC
ATTCGATGGCTTCCTTACTCAAACATCAATTTTTATATAGGTATA
Found at i:72676 original size:24 final size:24
Alignment explanation
Indices: 72648--72693 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
72638 GCGGCATGGC
72648 TGGCATGTGGCCGCGAATGCGGCA
1 TGGCATGTGGCCGCGAATGCGGCA
72672 TGGCATGTGGCCGCGAATGCGG
1 TGGCATGTGGCCGCGAATGCGG
72694 GGCAGGCGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.15, C:0.24, G:0.43, T:0.17
Consensus pattern (24 bp):
TGGCATGTGGCCGCGAATGCGGCA
Left flanking sequence: Indices 72148 -- 72647
TGGGGCATATCCTGGTGCCCAATCTCCAGTCCGCGTCAATGGAGTCAATCGCCCAGAGGTAGCGT
TGCCGCAATGCGCGTGGAAAAGCATCTGGGAAACCAAGTCATGACCCATAAAAGGACGACTTGGA
AGATACTGTTGGGATTGATGAGGCTGACGAATCCGAATGACGTAGCTGCTGAACGACAGCATTCA
CCAAGCCAGCGGGGAACGACTTGGTCCTGGAATCGGTTCTTTTGGTAGGTATAACGGGGGCCGGA
GACGGAAAACAAGGGCGAAGCAGGGGCATTCTCAGTAAGGGAATAAGACTATGCGGACATCTTAC
CTCGACGAACAGGTAGAAAAAGTCGAAGACGCAATCACGGGATCGACCTACTCTCTAGCGAGAGG
GTCGGCGGAGCCGCTATAGTAAGTCAATAGGGAAATCGACCGAGCCAGGTACTGAAGGGCGGCAG
TCATGATCCGAGGGTAGAGGACCACTTCAGTGGCAGCGGCATGGC
Right flanking sequence: Indices 72694 -- 73193
GGCAGGCGGCGACGCTTCAACTCTTCTGAGAAGACGGGTTGGTCCCAGCAGACATAAGAATGCTG
CTACGATCTCATTCAAGAAGTACCTCGTAAAGCGCGTCAATCTAGATCTAGATTGTTGTTGATGT
GCTTGAAGAAATCAGTGGCGGAGAGCTTTATGACGGGAAACTGTCACGTAAGGTTCGGAGGGCGG
GGAAATCTCCGACCCCTACTTTTGATTATGGTATGGTATTGTCAGATTTAAATGTAGGTATACTT
TATCTATTTGCTATATCTTCTCTAGGCGTGTATGGTATTATTACAGCAGGCTGGTCCAGTAATTC
TAAATATGCTTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTTTCTTATGAAGTTTCTATTG
GTCTTATTATCATTACCGTACTGATTTGTGTAGGTTCTCGTAACTTTAGTGAGATTGTAATCGCG
CAAAAGCAGATATGGTTTGCTGCGCCCTTGTTTCCTGTATTCATT
Found at i:78088 original size:10 final size:10
Alignment explanation
Indices: 78073--78102 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
78063 TAGCTTCGCC
78073 CTGCTATTGG
1 CTGCTATTGG
78083 CTGCTATTGG
1 CTGCTATTGG
78093 CTGCTATTGG
1 CTGCTATTGG
78103 TCGAGAGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.30, T:0.40
Consensus pattern (10 bp):
CTGCTATTGG
Left flanking sequence: Indices 77573 -- 78072
GAAAGTAGCTAATTGATACGTTCTAGGCATAGACGTTTTTTGCGTTCCGCCAGTCTTATTATAGC
AAGCGCGTAATCATCCGAACAGTTGTCGTCTACTGTTTCAATTAAATTTGATGATTTAGCACATT
GCAAAATTTAATTGACTTCGTTAAGTTTTCTGGAGAAATTATCATTATATATTATGTTATGATTA
TGATGTTGGCACGGCGGCGGCTATTAAAAAAGTTGTTTTTGGTATTAGAACTCCAGTCATTAAGG
CTTTTGTAGCTTCTACAGCAATGACGGCCTATAGCAAAATAAAGTCATAAAGGCGTCTCGAAGCT
TAATAAGTACGGCAATGCCCGGCCCGGGCGACCGGTCCTGCCCAACATCGTGCTCGAGGGCCGGT
GCTGTTTACCGCTCAGCGAAGAAGCTTCTCCCGGCTGAGTAATCGCTCGCTCCTCATGCCAGGTT
TGTTATGGGTTGGCAGTAGCACGGCAGTAGCCTGCTAGCTTCGCC
Right flanking sequence: Indices 78103 -- 78602
TCGAGAGCTTTACTTGATAACGAATCGGTTAGAGCTTTACACAAAGCTCCCAGCTTTTAGACTTT
TGTAATAGTAAAATATGCTTCGCCCTTTAACTTATGTTCTAATGTGTTTACTTCTTAGAAAAAAA
GAGACGATTTGTGGATAACCAATCGTTTTTCAAATCTCTGATAGCTACTTTACCGAAATGGATAC
ATCAATTTCGAAAATCAAAACATGAAAATATATTCTATACCAATCCTGATTACCTATTTCAATTA
TTATGGTTTTTGAAATATCATACCAATACACGTTTTCAGGTCTTAATCGATATTTGTGGAGTTGA
TTATCCCTCTCGAAAACAAAGATTTGAAGTAGTTTATAATTTACTAAGGGCGACCGCGAAGTAAC
CGAATAAAGTGCTCATTCGTACCAAACGAATGAGACGTTGTAGAAGTCTGCAACGAAACGGGCAC
GACTTATTTGACGGATATACCGCTAAAGACACCCAACAGGACGAA
Found at i:86876 original size:21 final size:21
Alignment explanation
Indices: 86850--86892 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
86840 ATAGAACCAA
86850 AAAAGCATGCGATATAATATG
1 AAAAGCATGCGATATAATATG
86871 AAAAGCATGCGATATAATATG
1 AAAAGCATGCGATATAATATG
86892 A
1 A
86893 TTCAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.23
Consensus pattern (21 bp):
AAAAGCATGCGATATAATATG
Left flanking sequence: Indices 86350 -- 86849
AATATATAGATTTTTTTTTACTGTGGACATTTAAAAGGTGCCCTGGTTCCATACGGCTCCACTAG
CATAGCGAGTAGAGGCCGAAGCGCTTCGGCCTTATTGGCCATTACTGTGTAATCGGCTTGACGCA
TGCGAGGCCACAGGTCAACTAATCGCGAAAAAGTGCCTTTCGGTGCAAAGCAGAGAGCCGCGCAG
CCATTAGACTCGTGGCTTCGCTTGAACGATACTTCCGGGTTTCTACTAACGTATATAGCCAGTAG
AATGGAAAGATTCCGATGAATCATCTACGATGATTCATTATGTTTGGGAAAATAGCTTAGTTGGT
TAGAGTGCTGGTCTGTCACGCCAGAAGTCGCGGGTTCAAATCCCGTTTTTCCCGGTAATTTTTTG
ATTCAAAAATGAATTATTATAAAATCAGTTCATAAAGAGAGATATATCTCTCTTTATGAACTGGT
AACTAAATCAGTTAAAATCTTTTTTTTTTATTGAAATAGAACCAA
Right flanking sequence: Indices 86893 -- 87392
TTCAATTTTACAGGGCGTAGCCCTTATCCTACCCGCGTCAAAAGTAATCTTGAGGTGTGAAACTT
TAGGGATAATGTAATAATGGTTAAGATTACATACTGAGCTGATGCTAGAGTAAAGAGATTGGAAA
AAAAAATTATGCTATGCGGATGAATAGTGCAAGGAACTAATACAAAGACCTTGTCAAAAAGACTC
TAAGATCTTAATCGGTGTTAGCGGAACCGAAAAATTTTCTATATAGAATTTTATAGAGAGAATAT
CCTAGGTTGCGTAAGTCGTATGTGGGCGCAGAGCGCAGCACGTGTGGTTCTAACCGGGGGAGAAA
AGCATGAGAGGGCCCGCCATCCTGACAAATACAACAATACTGTATCCTGGGTTCAAATCCCATTT
TCTCCGTAGGGGACGTAGTTCAATTGGTAGAGCGCATGTTTTGCAAGCATGAAGCTGTCGGTTCA
ACTCCGATCGTCTCCAAATAAACAAGTGATATATTGTAGAAAAGC
Done.