Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/JF973314.1/JF973314/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           104239
Total number of identified SSRs:                 43
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    9


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	31
2	10
3	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A	-	-	-	-	-	9	4	1	14
G	-	-	-	-	-		1		1
T	-	-	-	-	-	13	3		16
AT	-	5	1			1			7
CT	-	1							1
TA	-	2							2
GAA	1	1							2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A/T	-	-	-	-	-	22	7	1	30
C/G	-	-	-	-	-		1		1
AG/CT	-	1							1
AT/AT	-	7	1			1			9
AAG/CTT	1	1							2